BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019007
         (347 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
          Length = 57

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 7   ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 55


>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
 pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
           Homeodomain Of Uhrf1 With Histone H3k9me3
          Length = 241

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 192 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 240


>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
 pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 226

 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224


>pdb|2LN0|A Chain A, Structure Of Moz
          Length = 110

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 202 EISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           E     SC+  GK  N   ML CD CD  FH  CC+P +  +P   W+CQ C
Sbjct: 58  ECKTCSSCRDQGK--NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 107


>pdb|3V43|A Chain A, Crystal Structure Of Moz
          Length = 112

 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 202 EISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           E     SC+  GK  N   ML CD CD  FH  CC+P +  +P   W+CQ C
Sbjct: 60  ECKTCSSCRDQGK--NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQIC 109


>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3 Bound To A Histone Peptide
           Containing Acetylation At Lysine 14
 pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
           Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
           Type
 pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing Acetylation At Lysine 16
 pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
           Fingers Of Human Transcriptional Protein Dpf3b Bound To
           A Histone H4 Peptide Containing N-Terminal Acetylation
           At Serine 1
          Length = 114

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256
            +SC LCG ++N   +L CD CD  +H  C NP +   P  +W C  C  L
Sbjct: 58  CKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108


>pdb|1F62|A Chain A, Wstf-Phd
          Length = 51

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           CK+C K      ++LCD C++AFH  C  P +  +P   W C  C
Sbjct: 3   CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPAC 47


>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
           MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
           Homolog
          Length = 111

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 202 EISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQ 251
           E  V Q+CK   ++   S ML+CD CD+ +H  C  P +K +PT+ W C+
Sbjct: 53  ECKVCQNCK---QSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCK 99


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
           21a
          Length = 56

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 194 GEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           G    +GHE      C +C K   +  +L+CD C   +H  C +P +K +P   W+C  C
Sbjct: 1   GSSGSSGHE----DFCSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53

Query: 254 SN 255
            +
Sbjct: 54  QD 55


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 40.8 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN 255
           C +C K   +  +L+CD C   +H  C +P +K +P   W+C  C +
Sbjct: 8   CSVCRK---SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51


>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
          Length = 92

 Score = 40.8 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C++C + D    +L CD CD+ +H  C  P +  +P   W C  C
Sbjct: 19  CQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63


>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
          Length = 77

 Score = 40.0 bits (92), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 203 ISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +  + +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 23  LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76


>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
           Histone H3 N-Terminal Tail
 pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
           Histone H3 N-Terminal Tail
          Length = 72

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 203 ISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +  + +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 17  LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 70


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 39.3 bits (90), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 198 GTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254
           G+ H +   + CK  G+      +L CD C  ++H  C NP +  +P   WLC  C+
Sbjct: 4   GSDHHMEFCRVCKDGGE------LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54


>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
           1-9 Peptide
 pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
           H3k4me3 1-9 Peptide
 pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
 pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
          Length = 70

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 203 ISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +  + +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 15  LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68


>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
           Peptide
 pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
           Histone H3 Peptide
 pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
          Length = 69

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 203 ISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLCQCCSN 255
           +  + +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C  C N
Sbjct: 15  LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68


>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
           N-Terminal Tail
 pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
           N-Terminal Tail
          Length = 72

 Score = 38.9 bits (89), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 203 ISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPT-DNWLC 250
           +  + +C LCG   +    L+CD CD AFH  C +P +  +P+ D W C
Sbjct: 20  LCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC 68


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
           H3(1-10)k4 Peptide
          Length = 184

 Score = 36.2 bits (82), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256
           C    N   +L C+ C + FH SC  P +   P+  W+C  C +L
Sbjct: 7   CAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51


>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
 pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
           A H3k4me3 Peptide
          Length = 75

 Score = 35.8 bits (81), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN 255
           C  C K D+ S M+ CD CD+ +H  C            W C  C+N
Sbjct: 21  CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
           H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 35.8 bits (81), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256
           C    N   +L C+ C + FH +C  P +   P+ +W+C  C ++
Sbjct: 10  CAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54


>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
           Protein 107
          Length = 77

 Score = 35.4 bits (80), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDN-WLCQCC 253
           SC++CG     +  LLCD C+ A+H  C NP +  +P +  W C  C
Sbjct: 28  SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74


>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
           Corepressor
          Length = 88

 Score = 35.0 bits (79), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256
           C++C K  +   +++C+ C+  FH  C  P ++ +P + W C  C  L
Sbjct: 28  CRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
          Length = 61

 Score = 34.7 bits (78), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C++C +      ++LCD C  A+H  C +P ++  P   W C  C
Sbjct: 14  CEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHC 55


>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
           Terminal Loop Replaced By Corresponding Loop From Wstf
          Length = 61

 Score = 34.7 bits (78), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 198 GTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254
           G+ H +   + CK  G+      +L CD C  ++H  C  P +  +P   W C  C+
Sbjct: 4   GSDHHMEFCRVCKDGGE------LLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRCT 54


>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
           Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
           Recognition By The First Phd Finger Of Autoimmune
           Regulator
          Length = 66

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C    +   ++ CD C  AFH +C +P ++ +P+  W C  C
Sbjct: 11  CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52


>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
           Brpf2-Phd1 Finger
          Length = 88

 Score = 33.9 bits (76), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 209 CKLC--GKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C +C  G++ N++ +L CD C+ A H  C    +  +P   WLC+ C
Sbjct: 28  CSICMDGESQNSNVILFCDMCNLAVHQECYG--VPYIPEGQWLCRHC 72


>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
          Length = 71

 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 209 CKLC--GKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C +C  G++ N++ +L CD C+ A H  C    +  +P   WLC+ C
Sbjct: 19  CSICMDGESQNSNVILFCDMCNLAVHQEC--YGVPYIPEGQWLCRHC 63


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
           Human Autoimmune Regulator (Aire) In Complex With
           Histone H3(1-20cys) Peptide
          Length = 56

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCC 253
           C    +   ++ CD C  AFH +C +P ++ +P+  W C  C
Sbjct: 8   CAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 49


>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
           Finger-Bromodomain
          Length = 189

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256
           C++C K  +   +++C+ C+  FH  C  P ++ +P + W C  C  L
Sbjct: 5   CRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49


>pdb|2YT5|A Chain A, Solution Structure Of The Phd Domain Of Metal-Response
           Element-Binding Transcription Factor 2
          Length = 66

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 221 MLLCDYCDEAFHPSCCNPRIK---ILPTDNWLCQCC 253
           M++CD C + +H  C  P I    I   + WLC+ C
Sbjct: 23  MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58


>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire (aire-phd2)
          Length = 66

 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 212 CGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254
           CG   + + +L C +C  AFH  C  P     P     C+ CS
Sbjct: 15  CGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCS 57


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,740,596
Number of Sequences: 62578
Number of extensions: 378287
Number of successful extensions: 682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 60
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)