Query 019007
Match_columns 347
No_of_seqs 271 out of 1194
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.4 3.2E-14 7E-19 135.7 1.6 62 193-256 270-331 (336)
2 KOG0825 PHD Zn-finger protein 99.3 4.5E-13 9.7E-18 141.5 2.0 107 149-257 123-267 (1134)
3 KOG1512 PHD Zn-finger protein 98.9 3.8E-10 8.2E-15 108.9 1.6 59 195-257 305-364 (381)
4 PF00628 PHD: PHD-finger; Int 98.9 3.6E-10 7.7E-15 81.6 0.2 48 208-255 1-50 (51)
5 KOG4299 PHD Zn-finger protein 98.6 1E-08 2.2E-13 107.2 1.6 52 206-257 253-306 (613)
6 smart00249 PHD PHD zinc finger 98.6 3.1E-08 6.7E-13 68.3 3.3 46 208-253 1-47 (47)
7 KOG4443 Putative transcription 98.6 1.9E-08 4.2E-13 105.5 2.8 62 197-260 61-122 (694)
8 KOG0955 PHD finger protein BR1 98.5 5.6E-08 1.2E-12 107.4 4.6 72 204-277 217-297 (1051)
9 cd04718 BAH_plant_2 BAH, or Br 98.4 1.6E-07 3.4E-12 83.5 3.7 30 230-259 1-30 (148)
10 KOG0957 PHD finger protein [Ge 98.2 5E-07 1.1E-11 92.9 2.7 51 206-256 544-598 (707)
11 COG5141 PHD zinc finger-contai 98.1 1.2E-06 2.7E-11 89.9 2.2 71 206-278 193-272 (669)
12 KOG1245 Chromatin remodeling c 98.0 7.5E-07 1.6E-11 101.6 -1.1 53 206-258 1108-1160(1404)
13 KOG1973 Chromatin remodeling p 97.9 4.4E-06 9.4E-11 80.7 2.0 55 199-257 212-269 (274)
14 KOG0383 Predicted helicase [Ge 97.9 6.6E-06 1.4E-10 88.3 2.5 51 205-258 46-96 (696)
15 KOG4323 Polycomb-like PHD Zn-f 97.7 1.5E-05 3.3E-10 81.9 1.9 65 196-260 158-228 (464)
16 KOG0956 PHD finger protein AF1 97.5 4.1E-05 8.9E-10 81.5 2.4 70 208-279 7-88 (900)
17 KOG0954 PHD finger protein [Ge 97.3 7.4E-05 1.6E-09 80.1 1.0 50 205-256 270-321 (893)
18 PF13831 PHD_2: PHD-finger; PD 97.1 5.7E-05 1.2E-09 52.1 -1.3 34 219-254 2-36 (36)
19 COG5034 TNG2 Chromatin remodel 97.1 0.00018 3.9E-09 69.0 1.5 46 206-255 221-269 (271)
20 KOG1246 DNA-binding protein ju 95.3 0.015 3.3E-07 64.6 4.1 52 205-257 154-205 (904)
21 KOG1473 Nucleosome remodeling 94.8 0.013 2.9E-07 65.8 1.8 49 206-257 344-392 (1414)
22 PF01448 ELM2: ELM2 domain; I 94.2 0.023 5E-07 41.9 1.4 23 300-322 1-23 (55)
23 KOG0957 PHD finger protein [Ge 89.7 0.19 4.1E-06 52.9 2.0 70 207-276 120-205 (707)
24 PF15446 zf-PHD-like: PHD/FYVE 88.8 0.21 4.6E-06 45.8 1.5 50 208-257 1-61 (175)
25 KOG4443 Putative transcription 83.0 0.36 7.9E-06 52.0 -0.1 54 207-260 19-75 (694)
26 KOG4299 PHD Zn-finger protein 80.3 1.1 2.3E-05 48.2 2.2 47 207-256 48-95 (613)
27 KOG0383 Predicted helicase [Ge 78.9 0.37 8E-06 52.6 -1.8 57 198-257 498-555 (696)
28 PF14446 Prok-RING_1: Prokaryo 78.0 1.2 2.6E-05 33.7 1.3 32 207-238 6-38 (54)
29 PF13901 DUF4206: Domain of un 75.0 2.2 4.7E-05 39.6 2.4 43 206-257 152-199 (202)
30 PF07649 C1_3: C1-like domain; 72.9 1.3 2.9E-05 28.8 0.3 28 208-235 2-29 (30)
31 PF12861 zf-Apc11: Anaphase-pr 71.4 1.4 3E-05 36.2 0.2 48 207-256 33-80 (85)
32 cd04709 BAH_MTA BAH, or Bromo 68.1 2.8 6.1E-05 38.1 1.4 20 299-318 142-161 (164)
33 PF11793 FANCL_C: FANCL C-term 66.5 2.8 6E-05 32.7 1.0 50 207-256 3-64 (70)
34 PF13832 zf-HC5HC2H_2: PHD-zin 60.4 4.6 9.9E-05 33.2 1.2 30 206-237 55-86 (110)
35 KOG1512 PHD Zn-finger protein 56.3 4.5 9.8E-05 40.3 0.6 52 206-257 258-318 (381)
36 PF13639 zf-RING_2: Ring finge 51.2 0.73 1.6E-05 32.1 -4.3 42 208-254 2-44 (44)
37 PHA02929 N1R/p28-like protein; 50.7 12 0.00026 36.0 2.5 44 147-192 172-225 (238)
38 KOG1081 Transcription factor N 48.5 14 0.00031 38.6 2.9 65 205-275 88-152 (463)
39 cd00162 RING RING-finger (Real 45.4 5.6 0.00012 26.1 -0.5 42 209-255 2-43 (45)
40 KOG1473 Nucleosome remodeling 45.4 3 6.5E-05 47.9 -2.8 51 207-260 429-483 (1414)
41 PF13771 zf-HC5HC2H: PHD-like 44.4 11 0.00024 29.7 1.0 29 207-238 37-68 (90)
42 KOG1632 Uncharacterized PHD Zn 42.3 14 0.00031 37.3 1.6 40 220-259 74-116 (345)
43 KOG3554 Histone deacetylase co 41.6 8.4 0.00018 40.7 -0.1 22 299-320 166-187 (693)
44 PF00130 C1_1: Phorbol esters/ 39.3 19 0.00042 25.6 1.6 31 207-237 12-44 (53)
45 PF15446 zf-PHD-like: PHD/FYVE 38.3 24 0.00053 32.6 2.3 22 219-240 122-143 (175)
46 PF10497 zf-4CXXC_R1: Zinc-fin 37.8 11 0.00024 31.8 0.0 48 207-255 8-69 (105)
47 PF03107 C1_2: C1 domain; Int 36.5 28 0.00061 22.7 1.8 28 208-235 2-29 (30)
48 PF10367 Vps39_2: Vacuolar sor 33.3 26 0.00057 27.9 1.6 32 205-237 77-108 (109)
49 PF07227 DUF1423: Protein of u 32.6 29 0.00064 36.4 2.2 51 207-257 129-193 (446)
50 KOG3612 PHD Zn-finger protein 31.9 47 0.001 35.8 3.5 49 205-257 59-109 (588)
51 cd00730 rubredoxin Rubredoxin; 31.0 30 0.00065 25.6 1.4 12 247-258 34-45 (50)
52 PRK14559 putative protein seri 30.5 46 0.001 36.4 3.3 51 208-260 3-54 (645)
53 KOG1244 Predicted transcriptio 28.7 14 0.00031 36.6 -0.8 53 207-259 225-287 (336)
54 KOG1829 Uncharacterized conser 27.4 13 0.00028 40.2 -1.4 52 200-258 503-561 (580)
55 cd00029 C1 Protein kinase C co 26.6 35 0.00075 23.5 1.1 31 207-237 12-44 (50)
56 PF12678 zf-rbx1: RING-H2 zinc 26.5 13 0.00028 29.1 -1.3 31 220-254 43-73 (73)
57 PHA02926 zinc finger-like prot 26.1 56 0.0012 31.7 2.6 32 148-179 169-211 (242)
58 KOG4628 Predicted E3 ubiquitin 25.8 67 0.0015 32.8 3.3 50 207-259 230-279 (348)
59 COG5141 PHD zinc finger-contai 25.0 43 0.00094 35.9 1.8 31 207-239 304-336 (669)
60 PHA02929 N1R/p28-like protein; 24.3 27 0.00059 33.6 0.2 52 205-260 173-229 (238)
61 PF00301 Rubredoxin: Rubredoxi 21.5 42 0.00091 24.5 0.7 12 246-257 33-44 (47)
62 PF06937 EURL: EURL protein; 21.5 46 0.00099 32.9 1.1 23 205-227 14-36 (285)
63 PF10080 DUF2318: Predicted me 21.2 43 0.00094 28.3 0.8 32 205-236 34-67 (102)
64 PF05502 Dynactin_p62: Dynacti 20.9 53 0.0012 34.6 1.6 7 248-254 53-59 (483)
65 PF08746 zf-RING-like: RING-li 20.8 20 0.00044 25.4 -1.1 41 209-253 1-43 (43)
66 KOG4323 Polycomb-like PHD Zn-f 20.6 65 0.0014 34.1 2.1 49 207-257 84-134 (464)
67 KOG1734 Predicted RING-contain 20.5 27 0.00058 34.8 -0.7 51 205-257 223-280 (328)
68 KOG1080 Histone H3 (Lys4) meth 20.0 1.3E+02 0.0028 34.9 4.4 70 206-276 573-650 (1005)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.43 E-value=3.2e-14 Score=135.72 Aligned_cols=62 Identities=26% Similarity=0.667 Sum_probs=58.2
Q ss_pred cccccCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 019007 193 SGEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (347)
Q Consensus 193 ~~~~~~~~~~~~~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (347)
..+...|+|.+| .+|.+||..+++++|||||.||++||||||.||+.+.|+|.|-|..|...
T Consensus 270 avk~yrwqciec--k~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 270 AVKTYRWQCIEC--KYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred HHHhheeeeeec--ceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 456788999999 99999999999999999999999999999999999999999999999754
No 2
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.32 E-value=4.5e-13 Score=141.48 Aligned_cols=107 Identities=25% Similarity=0.488 Sum_probs=84.0
Q ss_pred CCCCCCcccccc-----CCCCCcchhhHHHHhhcCcccccccccccccccccccC--------C----------------
Q 019007 149 ISNSDISRLEVL-----DEDPSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSG--------T---------------- 199 (347)
Q Consensus 149 ~~eC~~s~~~~~-----~ee~S~~~~Cl~~l~~~~l~~~~~~Cp~~~~t~~~~~~--------~---------------- 199 (347)
...||+|...+. .+-.++|.||.+|+..|.-.. .+||+++..+.+... |
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~ 200 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKG 200 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhc
Confidence 367999998753 334577999999998887555 999999987643210 0
Q ss_pred --------ccccccccccccccccCCCCCeEEeccCCCC-CCCcccCCCCCCCCCCCccCccccCCC
Q 019007 200 --------GHEISVIQSCKLCGKADNTSTMLLCDYCDEA-FHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 200 --------~~~~~~~~~C~vC~~~~~~~~lLlCD~Cd~~-yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
.........|.+|...+.++.||+||.|+.+ ||+|||+|+|.++|.+.|||++|.--.
T Consensus 201 ~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 201 GDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred cccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 0011124569999999999999999999999 999999999999999999999997543
No 3
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.91 E-value=3.8e-10 Score=108.89 Aligned_cols=59 Identities=25% Similarity=0.602 Sum_probs=52.9
Q ss_pred cccCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCc-cccCCC
Q 019007 195 EVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQ-CCSNLN 257 (347)
Q Consensus 195 ~~~~~~~~~~~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp-~C~~~~ 257 (347)
+...|.|.+| ..|.+|++...++.++|||.||+|||++|++ |..+|.|.|+|- .|....
T Consensus 305 KTY~W~C~~C--~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 305 KTYFWKCSSC--ELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREAT 364 (381)
T ss_pred hhcchhhccc--HhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhc
Confidence 3456999999 8999999999999999999999999999999 999999999998 565443
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.87 E-value=3.6e-10 Score=81.62 Aligned_cols=48 Identities=33% Similarity=1.005 Sum_probs=43.0
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcccCCCCC--CCCCCCccCccccC
Q 019007 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIK--ILPTDNWLCQCCSN 255 (347)
Q Consensus 208 ~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~--~iP~g~W~Cp~C~~ 255 (347)
+|.+|++.++.+.||.||.|++.||+.|++|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999888999999999999999999999987 55667999999974
No 5
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.62 E-value=1e-08 Score=107.16 Aligned_cols=52 Identities=25% Similarity=0.725 Sum_probs=46.7
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCC--CCCCCCCCccCccccCCC
Q 019007 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPR--IKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PP--L~~iP~g~W~Cp~C~~~~ 257 (347)
.++|..|++.+.-..+++||+|+++||++||.|| ...+|.|.|||+.|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4699999998866778999999999999999999 568999999999998665
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.60 E-value=1.9e-08 Score=105.54 Aligned_cols=62 Identities=27% Similarity=0.710 Sum_probs=57.2
Q ss_pred cCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCCc
Q 019007 197 SGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 197 ~~~~~~~~~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~~ 260 (347)
.+|.|..| .+|+.|+.++++.++++|+.||.+||.||..|++..+|.|.|+|+.|..+...-
T Consensus 61 ~gWrC~~c--rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~ 122 (694)
T KOG4443|consen 61 GGWRCPSC--RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCD 122 (694)
T ss_pred CCcccCCc--eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhcc
Confidence 45999998 999999999999999999999999999999999999999999999998776443
No 8
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.54 E-value=5.6e-08 Score=107.44 Aligned_cols=72 Identities=24% Similarity=0.631 Sum_probs=59.1
Q ss_pred ccccccccccccCCC--CCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCCc-------cccCccccCCCCcC
Q 019007 204 SVIQSCKLCGKADNT--STMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV-------SQENSFLKSPNNSW 274 (347)
Q Consensus 204 ~~~~~C~vC~~~~~~--~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~~-------~~e~~~~k~~~i~W 274 (347)
..+.+|.+|.+++-. +.+|+||.|+.++|++|++ ..-+|+|.|+|..|....... ...++|++....+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 357899999998744 8999999999999999999 677999999999999777543 45566777767777
Q ss_pred CCC
Q 019007 275 MYG 277 (347)
Q Consensus 275 ~~~ 277 (347)
.+-
T Consensus 295 ~Hv 297 (1051)
T KOG0955|consen 295 AHV 297 (1051)
T ss_pred eee
Confidence 653
No 9
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.43 E-value=1.6e-07 Score=83.45 Aligned_cols=30 Identities=33% Similarity=0.897 Sum_probs=27.6
Q ss_pred CCCCcccCCCCCCCCCCCccCccccCCCCC
Q 019007 230 AFHPSCCNPRIKILPTDNWLCQCCSNLNSN 259 (347)
Q Consensus 230 ~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~ 259 (347)
|||++||.|||..+|+|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 799999999999999999999999977643
No 10
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.24 E-value=5e-07 Score=92.90 Aligned_cols=51 Identities=29% Similarity=0.783 Sum_probs=46.7
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCC----CccCccccCC
Q 019007 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD----NWLCQCCSNL 256 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g----~W~Cp~C~~~ 256 (347)
...|.+|++..+...++.||.|...||+.||.|||+.+|+. .|.|..|.+.
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 47899999999999999999999999999999999999985 4999999443
No 11
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.10 E-value=1.2e-06 Score=89.89 Aligned_cols=71 Identities=27% Similarity=0.651 Sum_probs=60.8
Q ss_pred ccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCC-------ccccCccccCCCCcCCC
Q 019007 206 IQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSN-------VSQENSFLKSPNNSWMY 276 (347)
Q Consensus 206 ~~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~-------~~~e~~~~k~~~i~W~~ 276 (347)
++.|.+|...+ +.+.+++||+|+.+.|..|++ +..+|+|.|+|..|.-.... ...+++|+.....+|.|
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 57899998865 457899999999999999999 88999999999999876654 36788899999999986
Q ss_pred CC
Q 019007 277 GK 278 (347)
Q Consensus 277 ~k 278 (347)
.-
T Consensus 271 ~i 272 (669)
T COG5141 271 VI 272 (669)
T ss_pred Hh
Confidence 43
No 12
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.03 E-value=7.5e-07 Score=101.63 Aligned_cols=53 Identities=32% Similarity=0.858 Sum_probs=49.9
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCC
Q 019007 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~ 258 (347)
...|.+|.+.+....|++||.|+.+||++|+.|.+..+|.|+|+|+.|+....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 46899999999999999999999999999999999999999999999998773
No 13
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.91 E-value=4.4e-06 Score=80.65 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=41.1
Q ss_pred CccccccccccccccccCCCCCeEEecc--CC-CCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 199 TGHEISVIQSCKLCGKADNTSTMLLCDY--CD-EAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 199 ~~~~~~~~~~C~vC~~~~~~~~lLlCD~--Cd-~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
+..+.....+|... ...-+.|+-||. |+ .+||+.|++ |...|+|.|||+.|....
T Consensus 212 ~~~d~~e~~yC~Cn--qvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 212 EAVDPDEPTYCICN--QVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccCCCCCEEEEec--ccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 33333334455433 223348999998 99 999999999 999999999999998764
No 14
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.86 E-value=6.6e-06 Score=88.26 Aligned_cols=51 Identities=27% Similarity=0.807 Sum_probs=45.8
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~ 258 (347)
+...|.+|++++ .+|+||.|..+||.+|++||+...|.++|.|+.|.....
T Consensus 46 ~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 46 EQEACRICADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 347999999988 699999999999999999999999999999999955544
No 15
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.69 E-value=1.5e-05 Score=81.88 Aligned_cols=65 Identities=28% Similarity=0.567 Sum_probs=49.5
Q ss_pred ccCCccccccccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCC----CCCCccCccccCCCCCc
Q 019007 196 VSGTGHEISVIQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKIL----PTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 196 ~~~~~~~~~~~~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~i----P~g~W~Cp~C~~~~~~~ 260 (347)
..+|.-...-...|.+|..+. ..++||+|+.|...||+.|+.|+++.. |.++|||..|......+
T Consensus 158 ~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 158 SLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 445544444344589988764 556999999999999999999997654 66689999998876444
No 16
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.53 E-value=4.1e-05 Score=81.47 Aligned_cols=70 Identities=24% Similarity=0.644 Sum_probs=56.5
Q ss_pred ccccccccC--CCCCeEEec--cCCCCCCCcccCCCCCCCCCCCccCccccCCC--------CCccccCccccCCCCcCC
Q 019007 208 SCKLCGKAD--NTSTMLLCD--YCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN--------SNVSQENSFLKSPNNSWM 275 (347)
Q Consensus 208 ~C~vC~~~~--~~~~lLlCD--~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~--------~~~~~e~~~~k~~~i~W~ 275 (347)
-|.||.+.. .++.|+.|| .|.-+.|..|++ +.+||.|.|||..|.... -....+.+.++..+.-|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWA 84 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWA 84 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCce
Confidence 477887533 567999998 799999999999 999999999999996554 234567778888899998
Q ss_pred CCCC
Q 019007 276 YGKP 279 (347)
Q Consensus 276 ~~k~ 279 (347)
|--+
T Consensus 85 HVVC 88 (900)
T KOG0956|consen 85 HVVC 88 (900)
T ss_pred EEEE
Confidence 7554
No 17
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.31 E-value=7.4e-05 Score=80.08 Aligned_cols=50 Identities=30% Similarity=0.789 Sum_probs=44.5
Q ss_pred cccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 019007 205 VIQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (347)
Q Consensus 205 ~~~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (347)
++..|.+|..++ +.+.|+|||.|+...|+-|++ +.++|.|.|.|..|.-.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 457899999875 557999999999999999999 99999999999999754
No 18
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.14 E-value=5.7e-05 Score=52.13 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCCCCcccCCCCCCCCCC-CccCcccc
Q 019007 219 STMLLCDYCDEAFHPSCCNPRIKILPTD-NWLCQCCS 254 (347)
Q Consensus 219 ~~lLlCD~Cd~~yH~~CL~PPL~~iP~g-~W~Cp~C~ 254 (347)
+.||.|+.|....|..|++ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4799999999999999999 7788887 79999884
No 19
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.13 E-value=0.00018 Score=69.03 Aligned_cols=46 Identities=33% Similarity=0.812 Sum_probs=35.9
Q ss_pred ccccccccccCCCCCeEEec--cCC-CCCCCcccCCCCCCCCCCCccCccccC
Q 019007 206 IQSCKLCGKADNTSTMLLCD--YCD-EAFHPSCCNPRIKILPTDNWLCQCCSN 255 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD--~Cd-~~yH~~CL~PPL~~iP~g~W~Cp~C~~ 255 (347)
.-+|. |++.. =+.|+-|| .|. .+||+.|++ |...|+|.|||+.|..
T Consensus 221 ~lYCf-CqqvS-yGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~ 269 (271)
T COG5034 221 ELYCF-CQQVS-YGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKK 269 (271)
T ss_pred eeEEE-ecccc-cccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHh
Confidence 34443 55532 34799999 576 578999999 9999999999999975
No 20
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=95.32 E-value=0.015 Score=64.57 Aligned_cols=52 Identities=31% Similarity=0.866 Sum_probs=47.0
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
+...|..|.++.++ .+++|+.|++.||.+|..|++..++.|+|.|+.|....
T Consensus 154 ~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTP 205 (904)
T ss_pred cchhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCcccccc
Confidence 45789999998877 45599999999999999999999999999999999874
No 21
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=94.80 E-value=0.013 Score=65.76 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=44.6
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
++.|.+|.+.+ .+++|..|++-||+.|..||+..+|+..|-|--|...+
T Consensus 344 ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 57899999887 59999999999999999999999999999999997554
No 22
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=94.22 E-value=0.023 Score=41.92 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=19.3
Q ss_pred cccCCCceeecCCCCccccCCcc
Q 019007 300 VRIGESYQAEVPDWSDQISSNLD 322 (347)
Q Consensus 300 vRiG~~fQa~VP~Wsg~~~~~~~ 322 (347)
+|||..|||+||+|-.......+
T Consensus 1 IrVG~~yQA~IP~~~~~~~~~~~ 23 (55)
T PF01448_consen 1 IRVGPEYQAEIPELLPDSERDED 23 (55)
T ss_pred CCcCCccCCcCCCCccccccccc
Confidence 59999999999999988765444
No 23
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=89.71 E-value=0.19 Score=52.89 Aligned_cols=70 Identities=21% Similarity=0.490 Sum_probs=48.6
Q ss_pred ccccccccc--CCCCCeEEeccCCCCCCCcccCCC-CCCCCCC-------CccCccccCCCCCc------cccCccccCC
Q 019007 207 QSCKLCGKA--DNTSTMLLCDYCDEAFHPSCCNPR-IKILPTD-------NWLCQCCSNLNSNV------SQENSFLKSP 270 (347)
Q Consensus 207 ~~C~vC~~~--~~~~~lLlCD~Cd~~yH~~CL~PP-L~~iP~g-------~W~Cp~C~~~~~~~------~~e~~~~k~~ 270 (347)
.+|.||-.. .+.+.+|.||.|+...|-.|++-- -..||.| .|||--|+.+-... ...+.|+...
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 379999653 466799999999999999999953 1234443 59999998765422 2334455555
Q ss_pred CCcCCC
Q 019007 271 NNSWMY 276 (347)
Q Consensus 271 ~i~W~~ 276 (347)
..+|.|
T Consensus 200 igrWvH 205 (707)
T KOG0957|consen 200 IGRWVH 205 (707)
T ss_pred hhhHHH
Confidence 567764
No 24
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=88.84 E-value=0.21 Score=45.77 Aligned_cols=50 Identities=26% Similarity=0.806 Sum_probs=35.8
Q ss_pred cccccc---ccCCCCCeEEeccCCCCCCCcccCCCCC------CCCCCC--ccCccccCCC
Q 019007 208 SCKLCG---KADNTSTMLLCDYCDEAFHPSCCNPRIK------ILPTDN--WLCQCCSNLN 257 (347)
Q Consensus 208 ~C~vC~---~~~~~~~lLlCD~Cd~~yH~~CL~PPL~------~iP~g~--W~Cp~C~~~~ 257 (347)
+|.+|+ ...+-+.|++|-+|..+||..||+|... .|-.++ -.|..|+.-.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 477784 4445679999999999999999998753 233333 4677776443
No 25
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=82.96 E-value=0.36 Score=52.04 Aligned_cols=54 Identities=24% Similarity=0.695 Sum_probs=40.4
Q ss_pred cccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCC-CCCCccCccccCCCCCc
Q 019007 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKIL-PTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 207 ~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~i-P~g~W~Cp~C~~~~~~~ 260 (347)
..|.+|+..+ .++.|+.|..|..-||.+|+.--+... -.+.|.|+.|+.+....
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 5778887644 567899999999999999999433322 23459999998776543
No 26
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.32 E-value=1.1 Score=48.23 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=40.0
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCcccCCCCCCC-CCCCccCccccCC
Q 019007 207 QSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKIL-PTDNWLCQCCSNL 256 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~i-P~g~W~Cp~C~~~ 256 (347)
..|.+|..++ .++.|+.|+.+||..|..+++... +.+.|.|..|...
T Consensus 48 ts~~~~~~~g---n~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 48 TSCGICKSGG---NLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhcchhhhcC---CccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 6899999988 489999999999999999998733 3457999999774
No 27
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=78.94 E-value=0.37 Score=52.63 Aligned_cols=57 Identities=18% Similarity=0.021 Sum_probs=50.9
Q ss_pred CCccccccccccccccccCCCCCeEEeccCCCCCCCcccCC-CCCCCCCCCccCccccCCC
Q 019007 198 GTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNP-RIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 198 ~~~~~~~~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~P-PL~~iP~g~W~Cp~C~~~~ 257 (347)
.|..+...+..|..|.+.. ..++|+.|-+.||..|+.| |++..+.|.|-|+.|..+.
T Consensus 498 ~~f~e~~~d~~~~~~~~~l---~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~ 555 (696)
T KOG0383|consen 498 EWFLEEFHDISCEEQIKKL---HLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKY 555 (696)
T ss_pred hhhhhhcchhhHHHHHHhh---ccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHH
Confidence 3677777889999999877 5889999999999999999 9999999999999997665
No 28
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.02 E-value=1.2 Score=33.68 Aligned_cols=32 Identities=25% Similarity=0.791 Sum_probs=27.8
Q ss_pred cccccccccC-CCCCeEEeccCCCCCCCcccCC
Q 019007 207 QSCKLCGKAD-NTSTMLLCDYCDEAFHPSCCNP 238 (347)
Q Consensus 207 ~~C~vC~~~~-~~~~lLlCD~Cd~~yH~~CL~P 238 (347)
..|.+|++.- +.+.++.|..|..-||-.|+..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 5799999865 4678999999999999999974
No 29
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=75.03 E-value=2.2 Score=39.64 Aligned_cols=43 Identities=28% Similarity=0.673 Sum_probs=34.0
Q ss_pred ccccccccccC-----CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 206 IQSCKLCGKAD-----NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 206 ~~~C~vC~~~~-----~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
..+|++|...+ +.+....|..|...||..|+.. . .||.|....
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R~~ 199 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCARRQ 199 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHhHh
Confidence 36899998765 4457889999999999999993 1 299997654
No 30
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=72.93 E-value=1.3 Score=28.83 Aligned_cols=28 Identities=32% Similarity=0.789 Sum_probs=12.5
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcc
Q 019007 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (347)
Q Consensus 208 ~C~vC~~~~~~~~lLlCD~Cd~~yH~~C 235 (347)
.|.+|++.......-.|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5889998876667899999999999887
No 31
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=71.41 E-value=1.4 Score=36.22 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=33.2
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 019007 207 QSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~ 256 (347)
..|..|.-.+++-.++++. |...||+.|+.--|..- ...=.||-|+..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred cCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 3455666666655666555 99999999998766653 223379999764
No 32
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=68.08 E-value=2.8 Score=38.07 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=17.2
Q ss_pred ccccCCCceeecCCCCcccc
Q 019007 299 RVRIGESYQAEVPDWSDQIS 318 (347)
Q Consensus 299 ~vRiG~~fQa~VP~Wsg~~~ 318 (347)
.+|||.+|||+||+|-...+
T Consensus 142 eirvg~~~qa~~p~~~~~~~ 161 (164)
T cd04709 142 EIRVGPSYQAKLPDLQPFPS 161 (164)
T ss_pred eEEecCcccccCCcccCCCC
Confidence 45999999999999987654
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=66.54 E-value=2.8 Score=32.66 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=19.7
Q ss_pred cccccccccC---CCCCeEEec--cCCCCCCCcccCCCCCCCCC-------CCccCccccCC
Q 019007 207 QSCKLCGKAD---NTSTMLLCD--YCDEAFHPSCCNPRIKILPT-------DNWLCQCCSNL 256 (347)
Q Consensus 207 ~~C~vC~~~~---~~~~lLlCD--~Cd~~yH~~CL~PPL~~iP~-------g~W~Cp~C~~~ 256 (347)
..|.+|.... +....+.|+ .|...||+.||.--+...+. -.+.||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 4688887643 233568898 99999999999743322211 13468888654
No 34
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=60.44 E-value=4.6 Score=33.23 Aligned_cols=30 Identities=37% Similarity=1.028 Sum_probs=25.3
Q ss_pred ccccccccccCCCCCeEEecc--CCCCCCCcccC
Q 019007 206 IQSCKLCGKADNTSTMLLCDY--CDEAFHPSCCN 237 (347)
Q Consensus 206 ~~~C~vC~~~~~~~~lLlCD~--Cd~~yH~~CL~ 237 (347)
...|.+|++.. +..+.|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHH
Confidence 46899999863 46899988 99999999986
No 35
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=56.27 E-value=4.5 Score=40.28 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=37.8
Q ss_pred ccccccccccC------CCCCeEEeccCCCCCCCcccCCCCC---CCCCCCccCccccCCC
Q 019007 206 IQSCKLCGKAD------NTSTMLLCDYCDEAFHPSCCNPRIK---ILPTDNWLCQCCSNLN 257 (347)
Q Consensus 206 ~~~C~vC~~~~------~~~~lLlCD~Cd~~yH~~CL~PPL~---~iP~g~W~Cp~C~~~~ 257 (347)
...|.+|-++. ..+.+++|..|..+||.+|+.=+.. .+-...|.|..|.-+.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~ 318 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCR 318 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhh
Confidence 35677876543 3468999999999999999984422 2345689999886554
No 36
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=51.24 E-value=0.73 Score=32.06 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=27.5
Q ss_pred ccccccccCC-CCCeEEeccCCCCCCCcccCCCCCCCCCCCccCcccc
Q 019007 208 SCKLCGKADN-TSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254 (347)
Q Consensus 208 ~C~vC~~~~~-~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~ 254 (347)
.|.+|...-. .+.++... |+-.||..|+..-+..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 5888887653 34444444 99999999998655432 2777774
No 37
>PHA02929 N1R/p28-like protein; Provisional
Probab=50.67 E-value=12 Score=36.02 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=30.3
Q ss_pred CCCCCCCCccccccCC----------CCCcchhhHHHHhhcCcccccccccccccc
Q 019007 147 SDISNSDISRLEVLDE----------DPSAREFCVSVLRSNGLLGAVGECSVRSVA 192 (347)
Q Consensus 147 ~d~~eC~~s~~~~~~e----------e~S~~~~Cl~~l~~~~l~~~~~~Cp~~~~t 192 (347)
.+..+|++|.-.+... ..+.|.||..|+..|-. ...+||+-+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~ 225 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTP 225 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCE
Confidence 3457999999865432 24789999999988743 23677766544
No 38
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=48.51 E-value=14 Score=38.63 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=44.7
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCCccccCccccCCCCcCC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWM 275 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~~~~e~~~~k~~~i~W~ 275 (347)
....|.+|..++ .+++||.+..++|-.|.. ...|.+.|.|..|......-..+-.|.+-..+.|+
T Consensus 88 ~~~~c~vc~~gg---s~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~ 152 (463)
T KOG1081|consen 88 EPSECFVCFKGG---SLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWW 152 (463)
T ss_pred CcchhccccCCC---ccceeccccccccccCcC---ccCcccccCCcceeeeccccceeEEeEEcCccccc
Confidence 357899999988 588999888888888866 45677777777776665333334444444455555
No 39
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=45.44 E-value=5.6 Score=26.06 Aligned_cols=42 Identities=21% Similarity=0.486 Sum_probs=27.5
Q ss_pred cccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccC
Q 019007 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN 255 (347)
Q Consensus 209 C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~ 255 (347)
|.+|...- ...+.-..|+-.||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 66776554 233445568888999999854433 4567888864
No 40
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=45.44 E-value=3 Score=47.90 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=39.7
Q ss_pred cccccccccCCCCCeEEecc-CCCCCCC-cccCCC--CCCCCCCCccCccccCCCCCc
Q 019007 207 QSCKLCGKADNTSTMLLCDY-CDEAFHP-SCCNPR--IKILPTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlCD~-Cd~~yH~-~CL~PP--L~~iP~g~W~Cp~C~~~~~~~ 260 (347)
.-|.+|+.. +.+|+|+. |..+||+ .||+-. -..++.+-|+|+.|...+...
T Consensus 429 rrl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~l 483 (1414)
T KOG1473|consen 429 RRLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGL 483 (1414)
T ss_pred eeeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccc
Confidence 457777744 38999998 9999999 899932 246789999999998776443
No 41
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=44.36 E-value=11 Score=29.70 Aligned_cols=29 Identities=28% Similarity=0.794 Sum_probs=24.5
Q ss_pred ccccccccc-CCCCCeEEec--cCCCCCCCcccCC
Q 019007 207 QSCKLCGKA-DNTSTMLLCD--YCDEAFHPSCCNP 238 (347)
Q Consensus 207 ~~C~vC~~~-~~~~~lLlCD--~Cd~~yH~~CL~P 238 (347)
..|.+|++. + ..+-|. .|...||..|..-
T Consensus 37 ~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKKGG---ACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCCCC---eEEEEeCCCCCcEEChHHHcc
Confidence 589999987 5 688896 5999999999873
No 42
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=42.27 E-value=14 Score=37.26 Aligned_cols=40 Identities=28% Similarity=0.650 Sum_probs=33.4
Q ss_pred CeEEeccCCCCCCCcc--cCCCCCCCCC-CCccCccccCCCCC
Q 019007 220 TMLLCDYCDEAFHPSC--CNPRIKILPT-DNWLCQCCSNLNSN 259 (347)
Q Consensus 220 ~lLlCD~Cd~~yH~~C--L~PPL~~iP~-g~W~Cp~C~~~~~~ 259 (347)
.++-||.|..+||..| .+.+-...|. ..|+|..|......
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~~ 116 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQDG 116 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhhh
Confidence 7899999999999999 8887777665 57999999866533
No 43
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=41.56 E-value=8.4 Score=40.73 Aligned_cols=22 Identities=36% Similarity=0.987 Sum_probs=17.9
Q ss_pred ccccCCCceeecCCCCccccCC
Q 019007 299 RVRIGESYQAEVPDWSDQISSN 320 (347)
Q Consensus 299 ~vRiG~~fQa~VP~Wsg~~~~~ 320 (347)
.+|||.+|||+||+|-..--+|
T Consensus 166 eIRVG~kYQA~i~e~l~EgEeD 187 (693)
T KOG3554|consen 166 EIRVGEKYQADIPEWLEEGEED 187 (693)
T ss_pred ceeecccccccchHHHHhcccc
Confidence 5699999999999997655444
No 44
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=39.34 E-value=19 Score=25.61 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=24.3
Q ss_pred cccccccccC--CCCCeEEeccCCCCCCCcccC
Q 019007 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCN 237 (347)
Q Consensus 207 ~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~ 237 (347)
..|.+|++.- ....-+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 5788888753 556789999999999999987
No 45
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=38.28 E-value=24 Score=32.58 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=18.2
Q ss_pred CCeEEeccCCCCCCCcccCCCC
Q 019007 219 STMLLCDYCDEAFHPSCCNPRI 240 (347)
Q Consensus 219 ~~lLlCD~Cd~~yH~~CL~PPL 240 (347)
+.|.-|..|.++||+.-|-|+-
T Consensus 122 nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 122 NVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred heEEecCCccceeehhhCCCCc
Confidence 3566799999999999988763
No 46
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.76 E-value=11 Score=31.81 Aligned_cols=48 Identities=25% Similarity=0.653 Sum_probs=29.3
Q ss_pred cccccccccCCCCCeEEe------ccC---CCCCCCcccCCCCCC-----CCCCCccCccccC
Q 019007 207 QSCKLCGKADNTSTMLLC------DYC---DEAFHPSCCNPRIKI-----LPTDNWLCQCCSN 255 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlC------D~C---d~~yH~~CL~PPL~~-----iP~g~W~Cp~C~~ 255 (347)
..|..|.+...+.. ..| ..| ...|=-.||.-...+ +..++|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46777777554333 445 555 666655665543322 3467899999975
No 47
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=36.46 E-value=28 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=21.5
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcc
Q 019007 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (347)
Q Consensus 208 ~C~vC~~~~~~~~lLlCD~Cd~~yH~~C 235 (347)
.|.+|++..+....-.|+.|.-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 5889987665443778999998888877
No 48
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=33.31 E-value=26 Score=27.89 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=21.9
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCN 237 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~ 237 (347)
+...|.+|++.-...... -.-|+..||..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~-~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFV-VFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEE-EeCCCeEEeccccc
Confidence 457899999965443333 33455889999975
No 49
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=32.61 E-value=29 Score=36.37 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=36.6
Q ss_pred cccccccccC---CCCCeEEeccCCCCCCCcccCCCC--------CC---CCCCCccCccccCCC
Q 019007 207 QSCKLCGKAD---NTSTMLLCDYCDEAFHPSCCNPRI--------KI---LPTDNWLCQCCSNLN 257 (347)
Q Consensus 207 ~~C~vC~~~~---~~~~lLlCD~Cd~~yH~~CL~PPL--------~~---iP~g~W~Cp~C~~~~ 257 (347)
..|-+|++-+ ++-..+-||.|+.+-|+.|-.-.- .. ...+.++|..|-...
T Consensus 129 C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 129 CMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred CCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 4889998754 556889999999999999976321 11 123468999996655
No 50
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.88 E-value=47 Score=35.83 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=39.1
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCC--CccCccccCCC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD--NWLCQCCSNLN 257 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g--~W~Cp~C~~~~ 257 (347)
.+-+|.-|.-.+ ..|.|+-|-+.||..|..|. .+++.. -|.|+.|....
T Consensus 59 ~d~~cfechlpg---~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 59 IDPFCFECHLPG---AVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCcccccccCCc---ceeeeehhhccccccccCcc-hhhccccccccCCcccccC
Confidence 357899998876 78999999999999999985 555544 49898887554
No 51
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.96 E-value=30 Score=25.61 Aligned_cols=12 Identities=25% Similarity=1.055 Sum_probs=9.8
Q ss_pred CccCccccCCCC
Q 019007 247 NWLCQCCSNLNS 258 (347)
Q Consensus 247 ~W~Cp~C~~~~~ 258 (347)
+|.||.|...+.
T Consensus 34 ~w~CP~C~a~K~ 45 (50)
T cd00730 34 DWVCPVCGAGKD 45 (50)
T ss_pred CCCCCCCCCcHH
Confidence 899999987653
No 52
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.46 E-value=46 Score=36.45 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=31.4
Q ss_pred ccccccccCCCCCeEEeccCCCCC-CCcccCCCCCCCCCCCccCccccCCCCCc
Q 019007 208 SCKLCGKADNTSTMLLCDYCDEAF-HPSCCNPRIKILPTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 208 ~C~vC~~~~~~~~lLlCD~Cd~~y-H~~CL~PPL~~iP~g~W~Cp~C~~~~~~~ 260 (347)
.|..|+.. +++...||..|+... |..|-.- -..+|.+.=||+.|-..-..+
T Consensus 3 ~Cp~Cg~~-n~~~akFC~~CG~~l~~~~Cp~C-G~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 3 ICPQCQFE-NPNNNRFCQKCGTSLTHKPCPQC-GTEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCc-CCCCCccccccCCCCCCCcCCCC-CCCCCcccccccccCCcccch
Confidence 56666644 344456777776554 2445443 245788888999997665443
No 53
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=28.66 E-value=14 Score=36.59 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=39.4
Q ss_pred cccccccc-------cCCCCCeEEeccCCCCCCCcccCCC---CCCCCCCCccCccccCCCCC
Q 019007 207 QSCKLCGK-------ADNTSTMLLCDYCDEAFHPSCCNPR---IKILPTDNWLCQCCSNLNSN 259 (347)
Q Consensus 207 ~~C~vC~~-------~~~~~~lLlCD~Cd~~yH~~CL~PP---L~~iP~g~W~Cp~C~~~~~~ 259 (347)
-+|..|-. .+-++.|+-|..|++.=|..||.=. +..+-...|.|-.|..+.-.
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csic 287 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSIC 287 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccc
Confidence 46777743 3456789999999999999999832 22456678999999877633
No 54
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=27.40 E-value=13 Score=40.15 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=35.5
Q ss_pred ccccc--cccccccccccC-----CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCC
Q 019007 200 GHEIS--VIQSCKLCGKAD-----NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (347)
Q Consensus 200 ~~~~~--~~~~C~vC~~~~-----~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~ 258 (347)
.|.-| .-.+|..|...+ +.+...-|+.|...||..|+.-- .+ .||.|..-..
T Consensus 503 ~C~lC~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~---s~----~CPrC~R~q~ 561 (580)
T KOG1829|consen 503 ECDLCTGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK---SP----CCPRCERRQK 561 (580)
T ss_pred hchhhccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc---CC----CCCchHHHHH
Confidence 45444 245799996554 23455789999999999999932 11 2999986553
No 55
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=26.59 E-value=35 Score=23.55 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=24.1
Q ss_pred cccccccccCC--CCCeEEeccCCCCCCCcccC
Q 019007 207 QSCKLCGKADN--TSTMLLCDYCDEAFHPSCCN 237 (347)
Q Consensus 207 ~~C~vC~~~~~--~~~lLlCD~Cd~~yH~~CL~ 237 (347)
.+|.+|++.-- ...-+.|..|....|..|..
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 46888876432 24678899999999999986
No 56
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=26.54 E-value=13 Score=29.06 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=19.5
Q ss_pred CeEEeccCCCCCCCcccCCCCCCCCCCCccCcccc
Q 019007 220 TMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254 (347)
Q Consensus 220 ~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~ 254 (347)
..+.=..|+-.||..|+..=|.. ...||.|+
T Consensus 43 ~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 34444679999999999744322 23788774
No 57
>PHA02926 zinc finger-like protein; Provisional
Probab=26.09 E-value=56 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCCCCCCccccccCC----C-------CCcchhhHHHHhhcCc
Q 019007 148 DISNSDISRLEVLDE----D-------PSAREFCVSVLRSNGL 179 (347)
Q Consensus 148 d~~eC~~s~~~~~~e----e-------~S~~~~Cl~~l~~~~l 179 (347)
+..+|++|.-.+... + .+.|.||+.|++.|..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~ 211 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHR 211 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHH
Confidence 346899999654221 1 4779999999998863
No 58
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=67 Score=32.78 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=35.7
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCC
Q 019007 207 QSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSN 259 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~ 259 (347)
+.|.+|-+.-..+..|-==-|.-.||..|.+|=|..- .=+||-|+..-.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCC
Confidence 5899998865444444446789999999999876443 2279999876543
No 59
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=24.97 E-value=43 Score=35.87 Aligned_cols=31 Identities=26% Similarity=0.754 Sum_probs=24.1
Q ss_pred cccccccccCCCCCeEEec--cCCCCCCCcccCCC
Q 019007 207 QSCKLCGKADNTSTMLLCD--YCDEAFHPSCCNPR 239 (347)
Q Consensus 207 ~~C~vC~~~~~~~~lLlCD--~Cd~~yH~~CL~PP 239 (347)
-.|.+|+... +.-+.|. .|-++||..|..-.
T Consensus 304 l~C~iCk~~~--GtcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 304 LGCLICKEFG--GTCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred heeeEEcccC--cceeeecccchhhhhhhhhhhhc
Confidence 4699998754 2678884 89999999998743
No 60
>PHA02929 N1R/p28-like protein; Provisional
Probab=24.32 E-value=27 Score=33.64 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=34.2
Q ss_pred cccccccccccCCCC-----CeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCCc
Q 019007 205 VIQSCKLCGKADNTS-----TMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV 260 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~-----~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~~~~ 260 (347)
.+..|.+|...-... .+..=..|.-.||..|+..-+...+ .||.|+..-..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEeeEE
Confidence 357899998753211 1223347889999999987554432 699998765443
No 61
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.49 E-value=42 Score=24.54 Aligned_cols=12 Identities=33% Similarity=1.229 Sum_probs=7.8
Q ss_pred CCccCccccCCC
Q 019007 246 DNWLCQCCSNLN 257 (347)
Q Consensus 246 g~W~Cp~C~~~~ 257 (347)
.+|.||.|...+
T Consensus 33 ~~w~CP~C~a~K 44 (47)
T PF00301_consen 33 DDWVCPVCGAPK 44 (47)
T ss_dssp TT-B-TTTSSBG
T ss_pred CCCcCcCCCCcc
Confidence 369999998765
No 62
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=21.49 E-value=46 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=20.6
Q ss_pred cccccccccccCCCCCeEEeccC
Q 019007 205 VIQSCKLCGKADNTSTMLLCDYC 227 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~lLlCD~C 227 (347)
++-+|.||+.+.+.+.|.+|..|
T Consensus 14 ddniCsVCkl~Td~~tLsfChiC 36 (285)
T PF06937_consen 14 DDNICSVCKLGTDTETLSFCHIC 36 (285)
T ss_pred CCceeeeeeecccccceeeccee
Confidence 45789999999999999999888
No 63
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.25 E-value=43 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.688 Sum_probs=23.3
Q ss_pred cccccccccccC--CCCCeEEeccCCCCCCCccc
Q 019007 205 VIQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCC 236 (347)
Q Consensus 205 ~~~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL 236 (347)
..+.|++|+..+ ..+..|.|-.|+.-|++.=+
T Consensus 34 a~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~i 67 (102)
T PF10080_consen 34 AFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTI 67 (102)
T ss_pred EEEeccccCCCceEEECCEEEEecCCCEEehhhc
Confidence 357899997654 33467789999999885433
No 64
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.86 E-value=53 Score=34.64 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=3.5
Q ss_pred ccCcccc
Q 019007 248 WLCQCCS 254 (347)
Q Consensus 248 W~Cp~C~ 254 (347)
|-||.|.
T Consensus 53 f~CP~C~ 59 (483)
T PF05502_consen 53 FDCPICF 59 (483)
T ss_pred ccCCCCC
Confidence 4555554
No 65
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=20.84 E-value=20 Score=25.42 Aligned_cols=41 Identities=20% Similarity=0.564 Sum_probs=19.0
Q ss_pred cccccccCCCCCeEEec--cCCCCCCCcccCCCCCCCCCCCccCccc
Q 019007 209 CKLCGKADNTSTMLLCD--YCDEAFHPSCCNPRIKILPTDNWLCQCC 253 (347)
Q Consensus 209 C~vC~~~~~~~~lLlCD--~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C 253 (347)
|.+|.+-- -.-+.|. .|...+|.+|+.--+...... .||.|
T Consensus 1 C~~C~~iv--~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV--TQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhH--eeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 55666532 1346787 699999999998544433322 67766
No 66
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.62 E-value=65 Score=34.10 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=37.2
Q ss_pred cccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 207 ~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
..|.+|.... .++.+..|+.|..+||..|..|.. .-.+.|.+..|+...
T Consensus 84 ~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~--~~~~~~~~~~c~~~~ 134 (464)
T KOG4323|consen 84 LNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRF--PSLDIGESTECVFPI 134 (464)
T ss_pred cCCcccccccccCchhhhhhhhhccCcccccCccCc--CcCCccccccccccc
Confidence 4677776543 455889999999999999999763 334678899887665
No 67
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=27 Score=34.76 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=30.0
Q ss_pred cccccccccccCCCCC-------eEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 019007 205 VIQSCKLCGKADNTST-------MLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (347)
Q Consensus 205 ~~~~C~vC~~~~~~~~-------lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~~~ 257 (347)
++.+|.+|++.-+.+. -+.==.|+-.||-+|..-= .+--..=.||.|+.+-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--civGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--CIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh--eeecCCCCCchHHHHh
Confidence 3579999998643221 1112258889999997621 1111123788887653
No 68
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=20.01 E-value=1.3e+02 Score=34.88 Aligned_cols=70 Identities=19% Similarity=0.650 Sum_probs=46.9
Q ss_pred ccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccC---CCCCc---cccCccccCCCCcCCC
Q 019007 206 IQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN---LNSNV---SQENSFLKSPNNSWMY 276 (347)
Q Consensus 206 ~~~C~vC~~~~--~~~~lLlCD~Cd~~yH~~CL~PPL~~iP~g~W~Cp~C~~---~~~~~---~~e~~~~k~~~i~W~~ 276 (347)
.+-|.+|+... ..+.++.||.|...-|..|+.. ++......|.|..|.. ...+. ....+.+.....+|.+
T Consensus 573 t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d~gr~~~ 650 (1005)
T KOG1080|consen 573 TERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGN-LKSYDGTSWVCDSCETLDIKRSCCLCPVKGGALKPTDEGRWVH 650 (1005)
T ss_pred cccccccccccccccceeeeeccccccCCCccccc-CCCCCCCcchhhccccccCCchhhhccccCcccCCCCccchhh
Confidence 46799998754 3468899999999999999984 4444445799999986 33221 2223334444566664
Done!