Your job contains 1 sequence.
>019008
MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY
FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR
GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC
YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY
TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK
RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019008
(347 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145638 - symbol:COP13 "AT5G14250" species:370... 1080 2.6e-109 1
UNIPROTKB|Q9UNS2 - symbol:COPS3 "COP9 signalosome complex... 617 3.1e-60 1
MGI|MGI:1349409 - symbol:Cops3 "COP9 (constitutive photom... 616 3.9e-60 1
RGD|1303002 - symbol:Cops3 "COP9 signalosome subunit 3" s... 616 3.9e-60 1
ZFIN|ZDB-GENE-030131-7660 - symbol:cops3 "COP9 constituti... 616 3.9e-60 1
UNIPROTKB|Q5ZJF1 - symbol:COPS3 "COP9 signalosome complex... 615 5.0e-60 1
UNIPROTKB|A6H7B5 - symbol:COPS3 "COP9 signalosome complex... 614 6.4e-60 1
UNIPROTKB|E2RD70 - symbol:COPS3 "Uncharacterized protein"... 611 1.3e-59 1
UNIPROTKB|F1SB16 - symbol:COPS3 "Uncharacterized protein"... 610 1.7e-59 1
DICTYBASE|DDB_G0291848 - symbol:csn3 "proteasome componen... 542 2.7e-52 1
FB|FBgn0027055 - symbol:CSN3 "COP9 complex homolog subuni... 356 1.4e-32 1
ASPGD|ASPL0000007455 - symbol:csnC species:162425 "Emeric... 207 4.1e-20 2
UNIPROTKB|G4NAX6 - symbol:MGG_00687 "Uncharacterized prot... 159 7.0e-11 2
WB|WBGene00000815 - symbol:csn-3 species:6239 "Caenorhabd... 162 5.4e-09 1
UNIPROTKB|B4DT72 - symbol:PSMD3 "26S proteasome non-ATPas... 142 5.0e-07 1
ZFIN|ZDB-GENE-040426-1444 - symbol:psmd3 "proteasome (pro... 144 5.6e-07 1
MGI|MGI:98858 - symbol:Psmd3 "proteasome (prosome, macrop... 142 1.0e-06 1
RGD|1311470 - symbol:Psmd3 "proteasome (prosome, macropai... 142 1.0e-06 1
UNIPROTKB|Q2KJ46 - symbol:PSMD3 "26S proteasome non-ATPas... 142 1.0e-06 1
UNIPROTKB|E2QUY7 - symbol:PSMD3 "Uncharacterized protein"... 142 1.0e-06 1
UNIPROTKB|O43242 - symbol:PSMD3 "26S proteasome non-ATPas... 142 1.0e-06 1
DICTYBASE|DDB_G0288621 - symbol:psmD3 "26S proteasome non... 134 7.4e-06 1
UNIPROTKB|F1RXA7 - symbol:LOC100512253 "Uncharacterized p... 131 1.8e-05 1
TAIR|locus:2204385 - symbol:AT1G75990 species:3702 "Arabi... 130 2.0e-05 1
UNIPROTKB|J3QKR0 - symbol:COPS3 "COP9 signalosome complex... 106 2.6e-05 1
POMBASE|SPAC222.16c - symbol:csn3 "COP9/signalosome compl... 126 2.9e-05 1
TAIR|locus:2198561 - symbol:EMB2719 "EMBRYO DEFECTIVE 271... 124 9.1e-05 1
UNIPROTKB|G4NDR0 - symbol:MGG_00884 "26S proteasome non-A... 118 0.00051 1
>TAIR|locus:2145638 [details] [associations]
symbol:COP13 "AT5G14250" species:3702 "Arabidopsis
thaliana" [GO:0008180 "signalosome" evidence=TAS;IPI] [GO:0009640
"photomorphogenesis" evidence=RCA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010388 "cullin deneddylation"
evidence=RCA;IMP] [GO:0010971 "positive regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016571 "histone methylation"
evidence=RCA] [GO:0016579 "protein deubiquitination" evidence=RCA]
[GO:0019915 "lipid storage" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051604
"protein maturation" evidence=RCA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0007275 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000085 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009585 EMBL:AL163817 GO:GO:0008180
GO:GO:0010388 EMBL:AF361759 EMBL:AF361760 EMBL:AF395059
EMBL:AF419585 EMBL:AY113041 EMBL:AY084910 IPI:IPI00524958
PIR:T48598 RefSeq:NP_568296.1 UniGene:At.5163
ProteinModelPortal:Q8W575 SMR:Q8W575 IntAct:Q8W575 STRING:Q8W575
PaxDb:Q8W575 PRIDE:Q8W575 DNASU:831275 EnsemblPlants:AT5G14250.1
GeneID:831275 KEGG:ath:AT5G14250 TAIR:At5g14250 eggNOG:NOG249849
HOGENOM:HOG000030451 InParanoid:Q8W575 KO:K12177 OMA:DRALYFF
PhylomeDB:Q8W575 ProtClustDB:CLSN2689667 Genevestigator:Q8W575
Uniprot:Q8W575
Length = 429
Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
Identities = 215/338 (63%), Positives = 261/338 (77%)
Query: 1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
+ S+E ++T IQGLS + D++AL D L+ A+D LR+E S LDQLD SKHSLGYLY
Sbjct: 5 VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64
Query: 61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
FLE ++KE+A +PIIARFI SC A QIR KF+++CK KD V+ L P+R
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124
Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184
Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
YYGGMI IG KRF+KALELL+NVVTAPM +NAIA+EAYKKYILVSLIH+GQF++TLPK
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
S+AAQR+ KN++ PY+EL N YN GKI ELE V +FE D NLGLVKQ VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304
Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
RNI RLTQ YLTLSLQDIAN VQL ++KEAEMHVLQM+
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMI 342
>UNIPROTKB|Q9UNS2 [details] [associations]
symbol:COPS3 "COP9 signalosome complex subunit 3"
species:9606 "Homo sapiens" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008180 "signalosome" evidence=IDA] [GO:0010388
"cullin deneddylation" evidence=IDA] [GO:0009416 "response to light
stimulus" evidence=TAS] [GO:0007165 "signal transduction"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 GO:GO:0007165 GO:GO:0001701
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416 EMBL:CH471196
GO:GO:0008180 CleanEx:HS_CSN3 GO:GO:0010388 eggNOG:NOG249849
HOGENOM:HOG000030451 KO:K12177 OMA:DRALYFF CTD:8533
HOVERGEN:HBG051135 OrthoDB:EOG49KFQJ EMBL:AF031647 EMBL:AF098109
EMBL:AK312476 EMBL:AK302304 EMBL:AK316400 EMBL:AC055811
EMBL:BC001891 IPI:IPI00025721 RefSeq:NP_001186054.1
RefSeq:NP_003644.2 UniGene:Hs.6076 ProteinModelPortal:Q9UNS2
DIP:DIP-32478N IntAct:Q9UNS2 MINT:MINT-129190 STRING:Q9UNS2
PhosphoSite:Q9UNS2 DMDM:55976621 PaxDb:Q9UNS2 PeptideAtlas:Q9UNS2
PRIDE:Q9UNS2 DNASU:8533 Ensembl:ENST00000268717
Ensembl:ENST00000539941 GeneID:8533 KEGG:hsa:8533 UCSC:uc002grd.3
GeneCards:GC17M017151 HGNC:HGNC:2239 HPA:HPA021997 MIM:604665
neXtProt:NX_Q9UNS2 PharmGKB:PA26755 InParanoid:Q9UNS2
PhylomeDB:Q9UNS2 ChiTaRS:COPS3 GenomeRNAi:8533 NextBio:31960
ArrayExpress:Q9UNS2 Bgee:Q9UNS2 CleanEx:HS_COPS3
Genevestigator:Q9UNS2 GermOnline:ENSG00000141030 Uniprot:Q9UNS2
Length = 423
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 139/342 (40%), Positives = 201/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>MGI|MGI:1349409 [details] [associations]
symbol:Cops3 "COP9 (constitutive photomorphogenic) homolog,
subunit 3 (Arabidopsis thaliana)" species:10090 "Mus musculus"
[GO:0001701 "in utero embryonic development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=ISO;IDA] [GO:0010388 "cullin deneddylation"
evidence=ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
MGI:MGI:1349409 GO:GO:0005737 GO:GO:0001701 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0008180 CleanEx:MM_CSN3 GO:GO:0010388
eggNOG:NOG249849 HOGENOM:HOG000030451 KO:K12177 OMA:DRALYFF
CTD:8533 HOVERGEN:HBG051135 OrthoDB:EOG49KFQJ EMBL:AF071313
EMBL:BC068179 IPI:IPI00131870 RefSeq:NP_036121.1 UniGene:Mm.40
ProteinModelPortal:O88543 IntAct:O88543 STRING:O88543
PhosphoSite:O88543 PaxDb:O88543 PRIDE:O88543
Ensembl:ENSMUST00000019517 GeneID:26572 KEGG:mmu:26572
InParanoid:O88543 NextBio:304659 Bgee:O88543 Genevestigator:O88543
GermOnline:ENSMUSG00000019373 Uniprot:O88543
Length = 423
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 139/342 (40%), Positives = 201/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>RGD|1303002 [details] [associations]
symbol:Cops3 "COP9 signalosome subunit 3" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0008180 "signalosome"
evidence=IEA;ISO] [GO:0010388 "cullin deneddylation"
evidence=IEA;ISO] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
RGD:1303002 GO:GO:0005737 GO:GO:0001701 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG249849
HOGENOM:HOG000030451 KO:K12177 OMA:DRALYFF CTD:8533
GeneTree:ENSGT00490000043408 HOVERGEN:HBG051135 OrthoDB:EOG49KFQJ
EMBL:BC079143 IPI:IPI00200828 RefSeq:NP_001004200.1 UniGene:Rn.3963
ProteinModelPortal:Q68FW9 STRING:Q68FW9 PhosphoSite:Q68FW9
PRIDE:Q68FW9 Ensembl:ENSRNOT00000004438 GeneID:287367
KEGG:rno:287367 UCSC:RGD:1303002 InParanoid:Q68FW9 NextBio:625967
Genevestigator:Q68FW9 Uniprot:Q68FW9
Length = 423
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 139/342 (40%), Positives = 201/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>ZFIN|ZDB-GENE-030131-7660 [details] [associations]
symbol:cops3 "COP9 constitutive photomorphogenic
homolog subunit 3" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 ZFIN:ZDB-GENE-030131-7660 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180
HOGENOM:HOG000030451 KO:K12177 CTD:8533 HOVERGEN:HBG051135
EMBL:BC045415 EMBL:BC064288 IPI:IPI00484908 RefSeq:NP_955979.1
UniGene:Dr.120979 ProteinModelPortal:Q6P2U9 PRIDE:Q6P2U9
GeneID:335720 KEGG:dre:335720 InParanoid:Q6P2U9 NextBio:20810996
Bgee:Q6P2U9 Uniprot:Q6P2U9
Length = 423
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 140/342 (40%), Positives = 198/342 (57%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K + LE D+ +I N D F
Sbjct: 122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y T EL V + E F DNN GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>UNIPROTKB|Q5ZJF1 [details] [associations]
symbol:COPS3 "COP9 signalosome complex subunit 3"
species:9031 "Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0010388 "cullin
deneddylation" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 eggNOG:NOG249849 HOGENOM:HOG000030451
KO:K12177 OMA:DRALYFF CTD:8533 GeneTree:ENSGT00490000043408
HOVERGEN:HBG051135 OrthoDB:EOG49KFQJ EMBL:AJ720483 IPI:IPI00599251
RefSeq:NP_001006163.1 UniGene:Gga.31710 ProteinModelPortal:Q5ZJF1
STRING:Q5ZJF1 PRIDE:Q5ZJF1 Ensembl:ENSGALT00000007721 GeneID:416504
KEGG:gga:416504 InParanoid:Q5ZJF1 NextBio:20819948 Uniprot:Q5ZJF1
Length = 423
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 139/342 (40%), Positives = 201/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T K EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>UNIPROTKB|A6H7B5 [details] [associations]
symbol:COPS3 "COP9 signalosome complex subunit 3"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0010388 "cullin deneddylation" evidence=IEA] [GO:0008180
"signalosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] InterPro:IPR000717 Pfam:PF01399
SMART:SM00088 GO:GO:0005737 GO:GO:0001701 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0008180 GO:GO:0010388 eggNOG:NOG249849
HOGENOM:HOG000030451 KO:K12177 OMA:DRALYFF EMBL:BC146183
IPI:IPI00695994 RefSeq:NP_001092374.1 UniGene:Bt.3232
ProteinModelPortal:A6H7B5 STRING:A6H7B5 PRIDE:A6H7B5
Ensembl:ENSBTAT00000025255 GeneID:507932 KEGG:bta:507932 CTD:8533
GeneTree:ENSGT00490000043408 HOVERGEN:HBG051135 InParanoid:A6H7B5
OrthoDB:EOG49KFQJ NextBio:20868278 Uniprot:A6H7B5
Length = 423
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 138/342 (40%), Positives = 202/342 (59%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGM++ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL + V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>UNIPROTKB|E2RD70 [details] [associations]
symbol:COPS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0001701 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12177 OMA:DRALYFF CTD:8533
GeneTree:ENSGT00490000043408 EMBL:AAEX03003732 RefSeq:XP_864801.2
ProteinModelPortal:E2RD70 Ensembl:ENSCAFT00000029331 GeneID:479528
KEGG:cfa:479528 NextBio:20854700 Uniprot:E2RD70
Length = 423
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 138/342 (40%), Positives = 200/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 SILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>UNIPROTKB|F1SB16 [details] [associations]
symbol:COPS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010388 "cullin deneddylation" evidence=IEA]
[GO:0008180 "signalosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
GO:GO:0005737 GO:GO:0001701 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0008180 GO:GO:0010388 KO:K12177 OMA:DRALYFF CTD:8533
GeneTree:ENSGT00490000043408 EMBL:CU927962 RefSeq:NP_001231078.1
UniGene:Ssc.11099 Ensembl:ENSSSCT00000019646 GeneID:100512312
KEGG:ssc:100512312 Uniprot:F1SB16
Length = 423
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 137/342 (40%), Positives = 199/342 (58%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDF 176
G + AI K+Q S LT++H + QLCLLAKC+K L L+ D+ +I R F
Sbjct: 122 GVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGM++ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL T V + E F D+N+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>DICTYBASE|DDB_G0291848 [details] [associations]
symbol:csn3 "proteasome component region PCI (PINT)
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008180 "signalosome" evidence=IEA;ISS;IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000717 Pfam:PF01399 SMART:SM00088
dictyBase:DDB_G0291848 GO:GO:0005737 GenomeReviews:CM000155_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0008180 eggNOG:NOG249849
KO:K12177 OMA:DRALYFF EMBL:DQ309431 EMBL:AAFI02000185
RefSeq:XP_629934.1 ProteinModelPortal:Q54E53 STRING:Q54E53
EnsemblProtists:DDB0233101 GeneID:8628339 KEGG:ddi:DDB_G0291848
ProtClustDB:CLSZ2497092 Uniprot:Q54E53
Length = 418
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 125/323 (38%), Positives = 184/323 (56%)
Query: 24 LKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83
LK+ LK E L R + L + L LD HSLG L L+ K R+ +
Sbjct: 16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLK-AKGSDQGKNRS-VFIDQCN 72
Query: 84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTT 141
F +C+ EQ+R P + + K Y + + L+ PIRGV + A+ + + T LT
Sbjct: 73 NFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTP 132
Query: 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRK 195
+H +FLQLC+L+KCY L ++E +I IN +D Y YY G+IF K+++K
Sbjct: 133 IHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKK 192
Query: 196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP 255
A+E V+TAP S+++AI VEAYKKY++V LI G PK T + QRN+K+ +P
Sbjct: 193 AIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKSHCKP 251
Query: 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSL 315
Y E V +++ G I ++ + E F+ D+N GLVK + S Y+RNI++LTQT++TLS+
Sbjct: 252 YTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSIKSTYRRNIKKLTQTFMTLSI 311
Query: 316 QDIANTVQLNSSKEAEMHVLQMV 338
DIA V L +K AE VL+M+
Sbjct: 312 NDIAEKVSLPKAK-AEQFVLKMI 333
>FB|FBgn0027055 [details] [associations]
symbol:CSN3 "COP9 complex homolog subunit 3" species:7227
"Drosophila melanogaster" [GO:0008180 "signalosome"
evidence=ISS;NAS] [GO:0050821 "protein stabilization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000717
Pfam:PF01399 SMART:SM00088 GO:GO:0007275 GO:GO:0005737
GO:GO:0007095 GO:GO:0050821 EMBL:AE014296 GO:GO:0048477
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0046331 GO:GO:0008180
CTD:1448 GO:GO:0000338 GO:GO:0019781 eggNOG:NOG249849 KO:K12177
OMA:DRALYFF GeneTree:ENSGT00490000043408 EMBL:AF129081
EMBL:AY071575 RefSeq:NP_524190.2 UniGene:Dm.5855
ProteinModelPortal:Q8SYG2 IntAct:Q8SYG2 MINT:MINT-278777
STRING:Q8SYG2 PaxDb:Q8SYG2 EnsemblMetazoa:FBtr0078269 GeneID:40308
KEGG:dme:Dmel_CG18332 FlyBase:FBgn0027055 InParanoid:Q8SYG2
OrthoDB:EOG4JQ2CW PhylomeDB:Q8SYG2 GenomeRNAi:40308 NextBio:818125
Bgee:Q8SYG2 GermOnline:CG18332 Uniprot:Q8SYG2
Length = 445
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 87/238 (36%), Positives = 128/238 (53%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIR-KIQSSTEHLTTLHPEFLQLCLLAKCYKAGL 160
I + R DQ+ LE + + L + K ++ + L L + + +A K
Sbjct: 123 IRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQ 182
Query: 161 SVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYK 220
N + F LY YYGGMI+ K + +AL +T P +++ I +EAYK
Sbjct: 183 QQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYK 242
Query: 221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280
K+++VSLI G+ + +PK T R +K + Y +LVN Y EL + E
Sbjct: 243 KFLMVSLIVEGKIAY-IPKNTQVIG-RFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 281 KFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
F DNN+GL KQV +S+YKRNIQRLT+T+LTLSL D+A+ VQL S+ EAE ++L M+
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILNMI 358
Score = 161 (61.7 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++EN V Q++ LS++ S L + L + LL + L + L+ LD +HSLG LY L
Sbjct: 4 ALENYVNQVRTLSASGS-YRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLYVL 62
Query: 63 EPCMYCSITKERANT-LVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRG 121
++ + T L+ ++ F+ + EQ+RY F C + + V+ I G
Sbjct: 63 LAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNLSILG 122
Query: 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN 171
+ + AI +I+ LT +H + L L AK + L L+ DI +I+
Sbjct: 123 IRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDIS 172
>ASPGD|ASPL0000007455 [details] [associations]
symbol:csnC species:162425 "Emericella nidulans"
[GO:0008180 "signalosome" evidence=IDA] [GO:0070791 "cleistothecium
development" evidence=IPI] [GO:0003674 "molecular_function"
evidence=ND] GO:GO:0005737 EMBL:BN001301 EMBL:AACD01000100
GO:GO:0008180 eggNOG:NOG249849 KO:K12177 RefSeq:XP_663402.1
STRING:Q5B0Y2 EnsemblFungi:CADANIAT00007250 GeneID:2870947
KEGG:ani:AN5798.2 HOGENOM:HOG000213404 OMA:YATINQR
OrthoDB:EOG42859W Uniprot:Q5B0Y2
Length = 496
Score = 207 (77.9 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 52/175 (29%), Positives = 92/175 (52%)
Query: 168 YEINLP-RDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMS-SINAIAVEAYKKYILV 225
+ NL RD + Y GM+++ K++ +A L V++AP + S++ I VEAYKK++L
Sbjct: 215 FSANLTYRDHLQFYMYSGMVYMALKKWDQASHCLGIVISAPTANSVSKIMVEAYKKWVLA 274
Query: 226 SLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESD 285
+L+ HG+ S +P + R ++ S+PY+ L + L T + + + +D
Sbjct: 275 NLLGHGKLFS-VPNLVAPHVTRVYQSLSKPYISLAEAFEKRDFQRLRTEISLGQTIWRAD 333
Query: 286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNS--SKEAEMHVLQMV 338
N GLV QV + K I +L +T+ L++ D+ S S++ E V+ +V
Sbjct: 334 KNSGLVYQVFEAYDKFLIIKLGKTFSALTMPDVLQRASSCSKGSRDIEEFVVSLV 388
Score = 95 (38.5 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 35/130 (26%), Positives = 61/130 (46%)
Query: 45 FLDQLDPSKHSLGYLYFLEPCMYCSITKERA----NTLVP------IIARFITSCSAEQI 94
+L+ + P+ HSL YLY L + + ++ A N L P +F+ S QI
Sbjct: 52 YLEAISPAVHSLSYLYLLRIRIQ-QLQEKTAVGVPNDLQPGGTLWNQTVKFLRSFDPIQI 110
Query: 95 RYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK 154
RYV ++ + + L + PI V + A+ ++ ++ T+LH ++L LL+
Sbjct: 111 RYVGHEWRELVDSVANAALSVSKPILAVKMIRDALERLNTAGV-FTSLHLMLVKLALLSS 169
Query: 155 CYKAGLSVLE 164
Y L VL+
Sbjct: 170 SYTYVLPVLD 179
>UNIPROTKB|G4NAX6 [details] [associations]
symbol:MGG_00687 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CM001235 KO:K12177 RefSeq:XP_003718322.1
EnsemblFungi:MGG_00687T0 GeneID:2675030 KEGG:mgr:MGG_00687
Uniprot:G4NAX6
Length = 497
Score = 159 (61.0 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 52/203 (25%), Positives = 94/203 (46%)
Query: 122 VGPML-TAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-Y 179
+GP L A ++I + P+ L LC L + +S +D + L L Y
Sbjct: 163 IGPALRVAAKRIVHYPGMINPPDPKSLILCDLRLPPSSYIS--QDTGFTTRLTALQVLEY 220
Query: 180 CYYGGMIFIGQKRFRKALELLHNVVTAPM--SSINAIAVEAYKKYILVSLIHHGQFSST- 236
+ G+++ + + A + P S ++ + +EA+KK++LVSL+ G+ ++
Sbjct: 221 DWLVGLLYCAARDWPAAQAAFARTASHPSRDSGVSKVMLEAFKKWVLVSLLAEGRITTPG 280
Query: 237 -LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVV 295
Y S A+ R ++PY + + + L V+ + ++F D N GLV +V+
Sbjct: 281 GFAPYISQASARTFGIMARPYAAVAKRFESADADALRLAVEVSSQQFAEDGNEGLVAEVL 340
Query: 296 SSMYKRNIQRLTQTYLTLSLQDI 318
S K I RL + Y +SL +I
Sbjct: 341 ESHQKWQIVRLREVYSKVSLAEI 363
Score = 62 (26.9 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 34/150 (22%), Positives = 60/150 (40%)
Query: 9 TQIQGLSSNASDITALKDYLKAAEDLLRSESTRL----LSFLDQLDPSKHSLGYLYFLEP 64
T+ + N A+K ++ L + S + LD L+P+ +SL YLY L
Sbjct: 13 TEEASTADNEKYNKAVKAHISNINSLFKERSAVIGDNAYKLLDLLNPAINSLSYLYLLAA 72
Query: 65 CM-----YCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPI 119
+ KE A ++ RF QIRY+ F ++ + ++ P
Sbjct: 73 LLPQGTKNAEYDKEFAERVILFFRRF----DPRQIRYMGVAFSDLFSATGRRNVM--PPT 126
Query: 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQL 149
V + A+ ++ S LT+ H ++L
Sbjct: 127 IAVPILADALLRLDPSGSVLTSNHIFLMKL 156
>WB|WBGene00000815 [details] [associations]
symbol:csn-3 species:6239 "Caenorhabditis elegans"
[GO:0000910 "cytokinesis" evidence=IMP] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;IDA]
[GO:0040001 "establishment of mitotic spindle localization"
evidence=IMP] [GO:0008180 "signalosome" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000717 Pfam:PF01399
GO:GO:0007275 GO:GO:0005737 GO:GO:0030154 GO:GO:0048477
GO:GO:0000910 GO:GO:0006511 GO:GO:0008180 GO:GO:0040001
eggNOG:NOG249849 KO:K12177 GeneTree:ENSGT00490000043408
EMBL:FO081257 RefSeq:NP_499878.3 ProteinModelPortal:Q9N425
IntAct:Q9N425 MINT:MINT-1115499 STRING:Q9N425 PaxDb:Q9N425
EnsemblMetazoa:Y38C1AA.2 GeneID:176834 KEGG:cel:CELE_Y38C1AA.2
UCSC:Y38C1AA.2 CTD:176834 WormBase:Y38C1AA.2 InParanoid:Q9N425
OMA:YASVEPF NextBio:894218 Uniprot:Q9N425
Length = 501
Score = 162 (62.1 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 49/171 (28%), Positives = 81/171 (47%)
Query: 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQ 232
P+ Y Y G I I KRF AL LL V P S+ ++++KKY+L+SLI G+
Sbjct: 256 PKYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGK 315
Query: 233 FSSTLPKYTSSAAQRNLKNFSQPYMELVN-----TYNTGKIVELETYVQTNREKFESDNN 287
T + +A R+ K S Y + + NT VE + V++ +++ D N
Sbjct: 316 VDVT--ENGDKSAIRHFKTKSPEYKQFSEIRFSRSSNTHSAVE--SLVKSAKDRLRKDGN 371
Query: 288 LGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K +V M K+ I LT+ + ++ + +I L S + + Q+V
Sbjct: 372 TEIAKYLVVEMKKKTIMSLTRMFTSIRISEIEELAFLKSRDQVTELIGQLV 422
>UNIPROTKB|B4DT72 [details] [associations]
symbol:PSMD3 "26S proteasome non-ATPase regulatory subunit
3" species:9606 "Homo sapiens" [GO:0030234 "enzyme regulator
activity" evidence=IEA] [GO:0042176 "regulation of protein
catabolic process" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] InterPro:IPR000717 InterPro:IPR013586 Pfam:PF01399
Pfam:PF08375 SMART:SM00088 GO:GO:0030234 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0050790 GO:GO:0000502 GO:GO:0042176
EMBL:AC090844 InterPro:IPR013143 SMART:SM00753 HOVERGEN:HBG000703
UniGene:Hs.12970 HGNC:HGNC:9560 ChiTaRS:PSMD3 EMBL:AK300081
IPI:IPI01014869 STRING:B4DT72 Ensembl:ENST00000541736
Uniprot:B4DT72
Length = 356
Score = 142 (55.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 150 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 208
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 209 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHN 263
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 264 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 304
>ZFIN|ZDB-GENE-040426-1444 [details] [associations]
symbol:psmd3 "proteasome (prosome, macropain) 26S
subunit, non-ATPase, 3" species:7955 "Danio rerio" [GO:0030234
"enzyme regulator activity" evidence=IEA] [GO:0042176 "regulation
of protein catabolic process" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375 SMART:SM00088
ZFIN:ZDB-GENE-040426-1444 GO:GO:0030234 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0050790 Gene3D:1.25.40.10 GO:GO:0000502
GO:GO:0042176 InterPro:IPR013143 SMART:SM00753 HOGENOM:HOG000193909
KO:K03033 CTD:5709 GeneTree:ENSGT00490000043406 HOVERGEN:HBG000703
EMBL:FP017234 EMBL:BC056598 EMBL:BC066451 IPI:IPI00507046
RefSeq:NP_956866.1 UniGene:Dr.13797 Ensembl:ENSDART00000027158
GeneID:393544 KEGG:dre:393544 InParanoid:Q6NYV1 NextBio:20814565
Uniprot:Q6NYV1
Length = 503
Score = 144 (55.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 43/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A L N + AP + +K I+V L+ G+ L
Sbjct: 257 YLYYTGRIKAIQLEYSEARRTLTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 315
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 316 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHN 370
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 371 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 411
>MGI|MGI:98858 [details] [associations]
symbol:Psmd3 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 3" species:10090 "Mus musculus" [GO:0000502 "proteasome
complex" evidence=IEA] [GO:0022624 "proteasome accessory complex"
evidence=IDA] [GO:0030234 "enzyme regulator activity" evidence=IEA]
[GO:0042176 "regulation of protein catabolic process" evidence=IEA]
InterPro:IPR000717 InterPro:IPR011990 InterPro:IPR013586
Pfam:PF01399 Pfam:PF08375 SMART:SM00088 MGI:MGI:98858 GO:GO:0030234
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790 EMBL:CH466556
Gene3D:1.25.40.10 GO:GO:0042176 EMBL:AL590963 InterPro:IPR013143
SMART:SM00753 GO:GO:0022624 eggNOG:NOG251646 HOGENOM:HOG000193909
KO:K03033 CTD:5709 GeneTree:ENSGT00490000043406 HOVERGEN:HBG000703
OMA:NQSVKAM OrthoDB:EOG4VHK6D ChiTaRS:PSMD3 EMBL:M25149
EMBL:AK145488 EMBL:AK164593 EMBL:AK165520 EMBL:AK166683
EMBL:AK166714 EMBL:AK167285 EMBL:AK169690 EMBL:BC003197
IPI:IPI00314439 PIR:I49504 RefSeq:NP_033465.1 UniGene:Mm.12194
ProteinModelPortal:P14685 IntAct:P14685 STRING:P14685
PhosphoSite:P14685 PaxDb:P14685 PRIDE:P14685
Ensembl:ENSMUST00000017365 GeneID:22123 KEGG:mmu:22123
InParanoid:Q3TP95 NextBio:301989 Bgee:P14685 Genevestigator:P14685
GermOnline:ENSMUSG00000017221 Uniprot:P14685
Length = 530
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 284 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 342
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 343 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHN 397
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 398 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 438
>RGD|1311470 [details] [associations]
symbol:Psmd3 "proteasome (prosome, macropain) 26S subunit,
non-ATPase, 3" species:10116 "Rattus norvegicus" [GO:0022624
"proteasome accessory complex" evidence=IEA;ISO] [GO:0030234
"enzyme regulator activity" evidence=IEA] [GO:0042176 "regulation
of protein catabolic process" evidence=IEA] InterPro:IPR000717
InterPro:IPR011990 InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375
SMART:SM00088 RGD:1311470 GO:GO:0030234 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0050790 Gene3D:1.25.40.10 GO:GO:0000502
GO:GO:0042176 EMBL:CH473948 InterPro:IPR013143 SMART:SM00753
eggNOG:NOG251646 HOGENOM:HOG000193909 KO:K03033 CTD:5709
GeneTree:ENSGT00490000043406 HOVERGEN:HBG000703 OMA:NQSVKAM
OrthoDB:EOG4VHK6D EMBL:BC085881 IPI:IPI00370009
RefSeq:NP_001008282.1 UniGene:Rn.101332 IntAct:Q5U2S7 STRING:Q5U2S7
Ensembl:ENSRNOT00000039836 GeneID:287670 KEGG:rno:287670
UCSC:RGD:1311470 InParanoid:Q5U2S7 NextBio:626775
Genevestigator:Q5U2S7 Uniprot:Q5U2S7
Length = 530
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 284 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 342
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 343 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHN 397
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 398 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 438
>UNIPROTKB|Q2KJ46 [details] [associations]
symbol:PSMD3 "26S proteasome non-ATPase regulatory subunit
3" species:9913 "Bos taurus" [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0042176 "regulation of protein catabolic
process" evidence=IEA] [GO:0030234 "enzyme regulator activity"
evidence=IEA] InterPro:IPR000717 InterPro:IPR011990
InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375 SMART:SM00088
GO:GO:0030234 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790
Gene3D:1.25.40.10 GO:GO:0042176 InterPro:IPR013143 SMART:SM00753
GO:GO:0022624 eggNOG:NOG251646 HOGENOM:HOG000193909 KO:K03033
EMBL:BC105526 IPI:IPI00707518 RefSeq:NP_001039365.1
UniGene:Bt.51586 ProteinModelPortal:Q2KJ46 STRING:Q2KJ46
PRIDE:Q2KJ46 Ensembl:ENSBTAT00000028608 GeneID:504937
KEGG:bta:504937 CTD:5709 GeneTree:ENSGT00490000043406
HOVERGEN:HBG000703 InParanoid:Q2KJ46 OMA:NQSVKAM OrthoDB:EOG4VHK6D
NextBio:20866898 Uniprot:Q2KJ46
Length = 534
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 346
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 347 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHN 401
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 402 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 442
>UNIPROTKB|E2QUY7 [details] [associations]
symbol:PSMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022624 "proteasome accessory complex"
evidence=IEA] [GO:0042176 "regulation of protein catabolic process"
evidence=IEA] [GO:0030234 "enzyme regulator activity" evidence=IEA]
InterPro:IPR000717 InterPro:IPR011990 InterPro:IPR013586
Pfam:PF01399 Pfam:PF08375 SMART:SM00088 GO:GO:0030234
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790
Gene3D:1.25.40.10 GO:GO:0000502 GO:GO:0042176 InterPro:IPR013143
SMART:SM00753 KO:K03033 CTD:5709 GeneTree:ENSGT00490000043406
OMA:NQSVKAM EMBL:AAEX03006469 RefSeq:XP_548138.2
Ensembl:ENSCAFT00000025807 GeneID:491018 KEGG:cfa:491018
Uniprot:E2QUY7
Length = 534
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 346
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 347 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHN 401
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 402 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 442
>UNIPROTKB|O43242 [details] [associations]
symbol:PSMD3 "26S proteasome non-ATPase regulatory subunit
3" species:9606 "Homo sapiens" [GO:0030234 "enzyme regulator
activity" evidence=IEA] [GO:0042176 "regulation of protein
catabolic process" evidence=IEA] [GO:0022624 "proteasome accessory
complex" evidence=ISS] [GO:0000502 "proteasome complex"
evidence=TAS] [GO:0000075 "cell cycle checkpoint" evidence=TAS]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS]
[GO:0000084 "S phase of mitotic cell cycle" evidence=TAS]
[GO:0000209 "protein polyubiquitination" evidence=TAS] [GO:0000216
"M/G1 transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0002474 "antigen processing
and presentation of peptide antigen via MHC class I" evidence=TAS]
[GO:0002479 "antigen processing and presentation of exogenous
peptide antigen via MHC class I, TAP-dependent" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006521 "regulation of cellular amino acid
metabolic process" evidence=TAS] [GO:0006915 "apoptotic process"
evidence=TAS] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031145 "anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0034641 "cellular nitrogen compound metabolic process"
evidence=TAS] [GO:0042590 "antigen processing and presentation of
exogenous peptide antigen via MHC class I" evidence=TAS]
[GO:0042981 "regulation of apoptotic process" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0051436 "negative regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051437
"positive regulation of ubiquitin-protein ligase activity involved
in mitotic cell cycle" evidence=TAS] [GO:0051439 "regulation of
ubiquitin-protein ligase activity involved in mitotic cell cycle"
evidence=TAS] Reactome:REACT_13505 Reactome:REACT_578
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_6850
Reactome:REACT_111217 InterPro:IPR000717 InterPro:IPR011990
InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375 SMART:SM00088
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006915 GO:GO:0010467 GO:GO:0016071
Reactome:REACT_115566 GO:GO:0030234 GO:GO:0005654 GO:GO:0002479
GO:GO:0016032 Reactome:REACT_21300 GO:GO:0006977 GO:GO:0042981
GO:GO:0044281 GO:GO:0000082 EMBL:CH471152 Gene3D:1.10.10.10
InterPro:IPR011991 Gene3D:1.25.40.10 GO:GO:0051436 GO:GO:0000216
GO:GO:0042176 GO:GO:0000209 GO:GO:0000084 GO:GO:0031145
GO:GO:0051437 GO:GO:0006521 Reactome:REACT_383 InterPro:IPR013143
SMART:SM00753 GO:GO:0022624 eggNOG:NOG251646 HOGENOM:HOG000193909
KO:K03033 CTD:5709 HOVERGEN:HBG000703 OMA:NQSVKAM OrthoDB:EOG4VHK6D
EMBL:D67025 EMBL:BT007217 EMBL:AK022896 EMBL:BC000074 EMBL:BC004859
EMBL:BC012302 EMBL:BC020518 EMBL:BC025686 IPI:IPI00011603
RefSeq:NP_002800.2 UniGene:Hs.12970 ProteinModelPortal:O43242
DIP:DIP-27571N IntAct:O43242 MINT:MINT-5003834 STRING:O43242
PhosphoSite:O43242 PaxDb:O43242 PeptideAtlas:O43242 PRIDE:O43242
DNASU:5709 Ensembl:ENST00000264639 GeneID:5709 KEGG:hsa:5709
UCSC:uc002htn.1 GeneCards:GC17P038137 HGNC:HGNC:9560 HPA:CAB017038
neXtProt:NX_O43242 PharmGKB:PA38123 InParanoid:O43242
PhylomeDB:O43242 ChiTaRS:PSMD3 GenomeRNAi:5709 NextBio:22182
ArrayExpress:O43242 Bgee:O43242 CleanEx:HS_PSMD3
Genevestigator:O43242 GermOnline:ENSG00000108344 Uniprot:O43242
Length = 534
Score = 142 (55.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/161 (26%), Positives = 74/161 (45%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
Y YY G I Q + +A + N + AP + +K I+V L+ G+ L
Sbjct: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPDRL 346
Query: 238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSS 297
Q +LK PY L TG + + + EKF++D L+ ++ +
Sbjct: 347 -----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHN 401
Query: 298 MYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 402 VIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 442
>DICTYBASE|DDB_G0288621 [details] [associations]
symbol:psmD3 "26S proteasome non-ATPase regulatory
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0050790
"regulation of catalytic activity" evidence=IEA] [GO:0042176
"regulation of protein catabolic process" evidence=IEA] [GO:0030234
"enzyme regulator activity" evidence=IEA] [GO:0000502 "proteasome
complex" evidence=IEA;ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0004175 "endopeptidase
activity" evidence=ISS] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000717 InterPro:IPR013586 Pfam:PF01399
Pfam:PF08375 SMART:SM00088 dictyBase:DDB_G0288621 GO:GO:0030234
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790
GenomeReviews:CM000154_GR EMBL:AAFI02000119 GO:GO:0004175
GO:GO:0000502 GO:GO:0006511 InterPro:IPR000082 GO:GO:0042176
InterPro:IPR013143 SMART:SM00753 eggNOG:NOG251646 KO:K03033
OMA:NQSVKAM RefSeq:XP_001134521.1 STRING:Q1ZXD3 PRIDE:Q1ZXD3
EnsemblProtists:DDB0232980 GeneID:8626718 KEGG:ddi:DDB_G0288621
Uniprot:Q1ZXD3
Length = 504
Score = 134 (52.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 37/161 (22%), Positives = 75/161 (46%)
Query: 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234
F Y YY G I Q + ++ + L + AP ++ YK +V L+ G+
Sbjct: 253 FARYFYYQGRIRAIQLEYAESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLM-GE-- 309
Query: 235 STLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
+P+ ++ +Q+ LK +PY L G + ++ N + F+SD LV+++
Sbjct: 310 --IPE-RNTFSQKQLKIALKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRL 366
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL 335
S++ K +++L Y +S DI ++ + + + M ++
Sbjct: 367 RSNVIKAGLKKLNTAYSRISFNDICTKLKFDGTTQDIMFII 407
>UNIPROTKB|F1RXA7 [details] [associations]
symbol:LOC100512253 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0042176 "regulation of protein catabolic process"
evidence=IEA] [GO:0030234 "enzyme regulator activity" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IEA] InterPro:IPR000717
InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375 SMART:SM00088
GO:GO:0030234 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790
GO:GO:0000502 GO:GO:0042176 InterPro:IPR013143 SMART:SM00753
GeneTree:ENSGT00490000043406 OMA:NQSVKAM EMBL:CU928026
Ensembl:ENSSSCT00000019042 Uniprot:F1RXA7
Length = 536
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 42/163 (25%), Positives = 74/163 (45%)
Query: 179 YCYYG--GMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSS 235
Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 288 YLYYTDPGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEIPD 346
Query: 236 TLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVV 295
L Q +LK PY L TG + + + EKF++D L+ ++
Sbjct: 347 RL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLR 401
Query: 296 SSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
++ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 402 HNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 444
>TAIR|locus:2204385 [details] [associations]
symbol:AT1G75990 species:3702 "Arabidopsis thaliana"
[GO:0000502 "proteasome complex" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008541 "proteasome regulatory
particle, lid subcomplex" evidence=ISS] [GO:0030234 "enzyme
regulator activity" evidence=IEA] [GO:0042176 "regulation of
protein catabolic process" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0030163 "protein catabolic process" evidence=TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR000717 InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375
SMART:SM00088 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0030234 EMBL:AC007396 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0050790 GO:GO:0030163 GO:GO:0000502
GO:GO:0042176 InterPro:IPR013143 SMART:SM00753 eggNOG:NOG251646
HOGENOM:HOG000193909 KO:K03033 ProtClustDB:CLSN2682716
EMBL:AY057508 IPI:IPI00526971 PIR:E96788 RefSeq:NP_177726.1
UniGene:At.15402 ProteinModelPortal:Q9LQR8 SMR:Q9LQR8 IntAct:Q9LQR8
STRING:Q9LQR8 PaxDb:Q9LQR8 PRIDE:Q9LQR8 EnsemblPlants:AT1G75990.1
GeneID:843931 KEGG:ath:AT1G75990 TAIR:At1g75990 InParanoid:Q9LQR8
OMA:LKHDNET PhylomeDB:Q9LQR8 Genevestigator:Q9LQR8
GermOnline:AT1G75990 Uniprot:Q9LQR8
Length = 487
Score = 130 (50.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 44/162 (27%), Positives = 81/162 (50%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++S+ ++ K I+V
Sbjct: 230 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLG-FRIQCNKWAIIVR 288
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREK-FESD 285
L+ G+ +P+ S Q+ ++ +PY EL N G + EL +Q K F D
Sbjct: 289 LLL-GE----IPE-RSIFTQKGMEKTLRPYFELTNAVRIGDL-ELFGKIQEKFAKTFAED 341
Query: 286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSS 327
L+ ++ ++ + ++ ++ +Y +SLQD+A ++LNS+
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSA 383
>UNIPROTKB|J3QKR0 [details] [associations]
symbol:COPS3 "COP9 signalosome complex subunit 3"
species:9606 "Homo sapiens" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0008180 "signalosome" evidence=IEA]
EMBL:AC055811 HGNC:HGNC:2239 ChiTaRS:COPS3 Ensembl:ENST00000477299
Uniprot:J3QKR0
Length = 116
Score = 106 (42.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVC 105
+ + TL + FI++C+ E IRY + F +C
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLC 104
>POMBASE|SPAC222.16c [details] [associations]
symbol:csn3 "COP9/signalosome complex subunit Csn3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005628 "prospore membrane"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0008180 "signalosome" evidence=ISS] [GO:0010388 "cullin
deneddylation" evidence=NAS] PomBase:SPAC222.16c GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005628 GO:GO:0008180
GO:GO:0010388 eggNOG:NOG249849 OrthoDB:EOG42859W PIR:T41713
PIR:T50156 RefSeq:NP_593155.3 EnsemblFungi:SPAC222.16c.1
GeneID:2541912 NextBio:20802999 Uniprot:Q9UT51
Length = 338
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 45/206 (21%), Positives = 87/206 (42%)
Query: 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKAL 197
++ +H +L+ L Y L D ++P L YC Y +G A
Sbjct: 80 ISVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAK 139
Query: 198 ELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYM 257
+++ P +++ + EAY ++L+ +I G+ L TSS LK PY
Sbjct: 140 VWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGK-KFQLDSATSSNVLP-LKRHMVPYE 197
Query: 258 ELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQD 317
E ++ Y + L T ++ + +F DN+ + + +++ +T+ +L L+
Sbjct: 198 EFLDAY-LKDVNTLRTVIKEHWSRFLKDNSTAFILFALEVYPMHRLKKWRKTFSSLKLEY 256
Query: 318 IANTVQLNSSKEAEMHVLQMVTFEVN 343
IA QL S++ ++Q + N
Sbjct: 257 IAK--QLAISQDVAKEIIQKFDNKTN 280
>TAIR|locus:2198561 [details] [associations]
symbol:EMB2719 "EMBRYO DEFECTIVE 2719" species:3702
"Arabidopsis thaliana" [GO:0000502 "proteasome complex"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008541
"proteasome regulatory particle, lid subcomplex" evidence=ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0030234 "enzyme regulator activity" evidence=IEA]
[GO:0042176 "regulation of protein catabolic process" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=TAS] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000717 InterPro:IPR013586 Pfam:PF01399 Pfam:PF08375
SMART:SM00088 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0030234 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0050790 GO:GO:0000502 GO:GO:0042176
EMBL:AC022472 InterPro:IPR013143 SMART:SM00753 EMBL:AY120740
IPI:IPI00528285 PIR:G86335 RefSeq:NP_173447.1 UniGene:At.15440
ProteinModelPortal:Q9LNU4 SMR:Q9LNU4 IntAct:Q9LNU4 STRING:Q9LNU4
PaxDb:Q9LNU4 PRIDE:Q9LNU4 ProMEX:Q9LNU4 EnsemblPlants:AT1G20200.1
GeneID:838609 KEGG:ath:AT1G20200 TAIR:At1g20200 eggNOG:NOG251646
HOGENOM:HOG000193909 InParanoid:Q9LNU4 KO:K03033 OMA:NYLSTSH
PhylomeDB:Q9LNU4 ProtClustDB:CLSN2682716 Genevestigator:Q9LNU4
GermOnline:AT1G20200 Uniprot:Q9LNU4
Length = 488
Score = 124 (48.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 40/160 (25%), Positives = 77/160 (48%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++++ ++ K ILV
Sbjct: 231 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALG-FRIQCNKWAILVR 289
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN 286
L+ G+ +P+ S Q+ ++ +PY EL N G + T + + F D
Sbjct: 290 LLL-GE----IPE-RSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDR 343
Query: 287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNS 326
L+ ++ ++ + ++ ++ +Y +SL D+A ++LNS
Sbjct: 344 THNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNS 383
>UNIPROTKB|G4NDR0 [details] [associations]
symbol:MGG_00884 "26S proteasome non-ATPase regulatory
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000717 InterPro:IPR013586 Pfam:PF01399
Pfam:PF08375 SMART:SM00088 GO:GO:0030234 EMBL:CM001235
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0050790 GO:GO:0000502
GO:GO:0042176 InterPro:IPR013143 SMART:SM00753 KO:K03033
RefSeq:XP_003718082.1 EnsemblFungi:MGG_00884T0 GeneID:2674538
KEGG:mgr:MGG_00884 Uniprot:G4NDR0
Length = 557
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 41/162 (25%), Positives = 71/162 (43%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVE--AYKKYILVSLIHHGQFSST 236
Y YY G I Q R+ +A E L SS A+ A K ++V L+
Sbjct: 305 YLYYLGRIRAIQLRYTEAHEHLTAATRKAPSSNCAVGFSQTATKLLLVVELL-----MGD 359
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
+P ++ Q L+ PY LV G + ET + + + F D L+ ++
Sbjct: 360 IPD-RATFRQPTLEEALHPYFLLVQAVRVGNLDNFETTIADHADTFRKDGTYTLILRLRQ 418
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
++ + I+ ++ +Y +SL+DI + L S + AE V + +
Sbjct: 419 NVIRTGIRMMSLSYSRISLRDICIRLHLGSEESAEYIVAKAI 460
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 347 347 0.00098 116 3 11 22 0.36 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 590 (63 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.39u 0.18s 28.57t Elapsed: 00:00:02
Total cpu time: 28.40u 0.18s 28.58t Elapsed: 00:00:02
Start: Fri May 10 16:07:25 2013 End: Fri May 10 16:07:27 2013