BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019008
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/338 (63%), Positives = 261/338 (77%)
Query: 1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
+ S+E ++T IQGLS + D++AL D L+ A+D LR+E S LDQLD SKHSLGYLY
Sbjct: 5 VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64
Query: 61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
FLE ++KE+A +PIIARFI SC A QIR KF+++CK KD V+ L P+R
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124
Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184
Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
YYGGMI IG KRF+KALELL+NVVTAPM +NAIA+EAYKKYILVSLIH+GQF++TLPK
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
S+AAQR+ KN++ PY+EL N YN GKI ELE V +FE D NLGLVKQ VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304
Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
RNI RLTQ YLTLSLQDIAN VQL ++KEAEMHVLQM+
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMI 342
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 198/342 (57%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K + LE D+ +I N D F
Sbjct: 122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y T EL V + E F DNN GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 202/342 (59%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGM++ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL + V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T K EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ ++EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMI 342
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +A+ +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ ++EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMI 342
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/323 (38%), Positives = 184/323 (56%), Gaps = 13/323 (4%)
Query: 24 LKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83
LK+ LK E L R + L + L LD HSLG L L+ S + + +
Sbjct: 16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLK--AKGSDQGKNRSVFIDQCN 72
Query: 84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTT 141
F +C+ EQ+R P + + K Y + + L+ PIRGV + A+ + + T LT
Sbjct: 73 NFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTP 132
Query: 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRK 195
+H +FLQLC+L+KCY L ++E +I IN +D Y YY G+IF K+++K
Sbjct: 133 IHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKK 192
Query: 196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP 255
A+E V+TAP S+++AI VEAYKKY++V LI G PK T + QRN+K+ +P
Sbjct: 193 AIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKSHCKP 251
Query: 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSL 315
Y E V +++ G I ++ + E F+ D+N GLVK + S Y+RNI++LTQT++TLS+
Sbjct: 252 YTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSIKSTYRRNIKKLTQTFMTLSI 311
Query: 316 QDIANTVQLNSSKEAEMHVLQMV 338
DIA V L +K AE VL+M+
Sbjct: 312 NDIAEKVSLPKAK-AEQFVLKMI 333
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 186/358 (51%), Gaps = 25/358 (6%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++EN V Q++ LS++ S L + L + LL + L + L+ LD +HSLG LY L
Sbjct: 4 ALENYVNQVRTLSASGS-YRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLYVL 62
Query: 63 EPCMY-CSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRG 121
++ S L+ ++ F+ + EQ+RY F C + + V+ I G
Sbjct: 63 LAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNLSILG 122
Query: 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----------- 170
+ + AI +I+ LT +H + L L AK + L L+ DI +I
Sbjct: 123 IRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQ 182
Query: 171 ----------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYK 220
N + F LY YYGGMI+ K + +AL +T P +++ I +EAYK
Sbjct: 183 QQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYK 242
Query: 221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280
K+++VSLI G+ + +PK T R +K + Y +LVN Y EL + E
Sbjct: 243 KFLMVSLIVEGKIA-YIPKNTQVIG-RFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 281 KFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
F DNN+GL KQV +S+YKRNIQRLT+T+LTLSL D+A+ VQL S+ EAE ++L M+
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILNMI 358
>sp|Q5B0Y2|CSN3_EMENI COP9 signalosome complex subunit 3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnC PE=1 SV=2
Length = 496
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 45/318 (14%)
Query: 44 SFLDQLDPSKHSLGYLYFL---------EPCMYCSITKERANTLVPIIARFITSCSAEQI 94
+L+ + P+ HSL YLY L + + + TL +F+ S QI
Sbjct: 51 GYLEAISPAVHSLSYLYLLRIRIQQLQEKTAVGVPNDLQPGGTLWNQTVKFLRSFDPIQI 110
Query: 95 RYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK 154
RYV ++ + + L + PI V + A+ ++ ++ T+LH ++L LL+
Sbjct: 111 RYVGHEWRELVDSVANAALSVSKPILAVKMIRDALERLNTAGV-FTSLHLMLVKLALLSS 169
Query: 155 CYKAGLSVLE--------------------------------DDIYEINLP-RDFFLYCY 181
Y L VL+ + NL RD +
Sbjct: 170 SYTYVLPVLDKLLCHFPSDTQNAHAGILLCSEHEPSTVFFTDSSGFSANLTYRDHLQFYM 229
Query: 182 YGGMIFIGQKRFRKALELLHNVVTAPMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
Y GM+++ K++ +A L V++AP + S++ I VEAYKK++L +L+ HG+ S +P
Sbjct: 230 YSGMVYMALKKWDQASHCLGIVISAPTANSVSKIMVEAYKKWVLANLLGHGKLFS-VPNL 288
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
+ R ++ S+PY+ L + L T + + + +D N GLV QV + K
Sbjct: 289 VAPHVTRVYQSLSKPYISLAEAFEKRDFQRLRTEISLGQTIWRADKNSGLVYQVFEAYDK 348
Query: 301 RNIQRLTQTYLTLSLQDI 318
I +L +T+ L++ D+
Sbjct: 349 FLIIKLGKTFSALTMPDV 366
>sp|Q7S7G7|CSN3_NEUCR COP9 signalosome complex subunit 3 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-3 PE=1 SV=2
Length = 497
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 132/314 (42%), Gaps = 38/314 (12%)
Query: 46 LDQLDPSKHSLGYLYFLEPCMYC-SITKERAN-TLVPIIARFITSCSAEQIRYVPEKFIN 103
L ++P+ +SL YL LE + T ++A+ +L +A+F A QIR + +
Sbjct: 52 LKHVNPAVYSLSYLMILEFLLQSPGWTSQQAHESLASYMAQFFLQFDARQIRCKGSTWSD 111
Query: 104 VCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
V K + L A + V + A+ ++ S +T+ H ++L A L ++
Sbjct: 112 VLKEAYSERGLFPASV-AVELVTAALLRLDPSGSIITSHHCNLVELAYNTGNVGALLPLI 170
Query: 164 EDDIY--------------EINLPRDFFL-----------------YCYYGGMIFIGQKR 192
E I +++LP ++ Y + G+ FI ++
Sbjct: 171 EKPIIYMPAKGMSTAQPLCDMSLPPPAYINPDSQLTDALTSAAVLQYDFLCGLCFIERRM 230
Query: 193 FRKALELLHNVVTAPM--SSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK 250
+++A + VT P + I EAY K+ILV L+ G+ TLP+ TS AA++
Sbjct: 231 WQQAFDAFERCVTYPTRDGGCSKIMTEAYNKWILVGLLLTGK-PPTLPETTSQAAKKIFA 289
Query: 251 NFSQPYMELVNTYNTGKIVEL-ETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQT 309
+PY + + +L + N E ++ N+ L K V++ + I L
Sbjct: 290 TQGKPYKLFAQAFKSETAGDLVREFEVINSELLPNEGNVELAKLVLAHYQRWQIINLRNI 349
Query: 310 YLTLSLQDIANTVQ 323
Y +SL+ I Q
Sbjct: 350 YTNISLEKIQERTQ 363
>sp|Q9N425|CSN3_CAEEL COP9 signalosome complex subunit 3 OS=Caenorhabditis elegans
GN=csn-3 PE=1 SV=4
Length = 501
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 9/171 (5%)
Query: 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQ 232
P+ Y Y G I I KRF AL LL V P S+ ++++KKY+L+SLI G+
Sbjct: 256 PKYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGK 315
Query: 233 FSSTLPKYTSSAAQRNLKNFSQPY-----MELVNTYNTGKIVELETYVQTNREKFESDNN 287
T + +A R+ K S Y + + NT V E+ V++ +++ D N
Sbjct: 316 VDVT--ENGDKSAIRHFKTKSPEYKQFSEIRFSRSSNTHSAV--ESLVKSAKDRLRKDGN 371
Query: 288 LGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ K +V M K+ I LT+ + ++ + +I L S + + Q+V
Sbjct: 372 TEIAKYLVVEMKKKTIMSLTRMFTSIRISEIEELAFLKSRDQVTELIGQLV 422
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 280 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 338
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 339 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIR 393
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 394 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 438
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 284 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 342
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 343 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIR 397
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 398 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 442
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 284 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 342
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 343 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIR 397
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + +
Sbjct: 398 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAI 442
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 7/161 (4%)
Query: 176 FFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQFS 234
F Y YY G I Q + ++ + L + AP ++ YK +V L+
Sbjct: 253 FARYFYYQGRIRAIQLEYAESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLM----- 307
Query: 235 STLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
+P+ ++ +Q+ LK +PY L G + ++ N + F+SD LV+++
Sbjct: 308 GEIPE-RNTFSQKQLKIALKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRL 366
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL 335
S++ K +++L Y +S DI ++ + + + M ++
Sbjct: 367 RSNVIKAGLKKLNTAYSRISFNDICTKLKFDGTTQDIMFII 407
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++S+ ++ K I+V
Sbjct: 230 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASL-GFRIQCNKWAIIVR 288
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREK-FESD 285
L+ +P+ S Q+ ++ +PY EL N G + EL +Q K F D
Sbjct: 289 LL-----LGEIPE-RSIFTQKGMEKTLRPYFELTNAVRIGDL-ELFGKIQEKFAKTFAED 341
Query: 286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSS 327
L+ ++ ++ + ++ ++ +Y +SLQD+A ++LNS+
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSA 383
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++++ ++ K ILV
Sbjct: 231 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAAL-GFRIQCNKWAILVR 289
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN 286
L+ +P+ S Q+ ++ +PY EL N G + T + + F D
Sbjct: 290 LL-----LGEIPE-RSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDR 343
Query: 287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNS 326
L+ ++ ++ + ++ ++ +Y +SL D+A ++LNS
Sbjct: 344 THNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNS 383
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLP 238
Y YY G+IF+ + + AL+ H T + S N V +K +++ ++ +S P
Sbjct: 168 YNYYNGIIFMVEGDYESALKCFH---TCVILSTNRDLVLGAEKRVILCMLLSSDYSIPYP 224
Query: 239 KYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSM 298
K + Y +L + I + E +++N+++ S + K++ ++
Sbjct: 225 ----------CKPSLRIYFKLASAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNV 274
Query: 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSSK 328
+ I++++ Y +S +DIA+ + +NS +
Sbjct: 275 IQEGIRKISVVYSRISYEDIAHILGINSGE 304
>sp|Q9UT51|CSN3_SCHPO COP9 signalosome complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn3 PE=3 SV=2
Length = 338
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Query: 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKAL 197
++ +H +L+ L Y L D ++P L YC Y +G A
Sbjct: 80 ISVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAK 139
Query: 198 ELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYM 257
+++ P +++ + EAY ++L+ +I G+ L TSS LK PY
Sbjct: 140 VWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGK-KFQLDSATSSNV-LPLKRHMVPYE 197
Query: 258 ELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQD 317
E ++ Y + L T ++ + +F DN+ + + +++ +T+ +L L+
Sbjct: 198 EFLDAY-LKDVNTLRTVIKEHWSRFLKDNSTAFILFALEVYPMHRLKKWRKTFSSLKLEY 256
Query: 318 IANTVQLNSSKEAEMHVLQMVTFEVNL 344
IA QL S++ ++Q + N
Sbjct: 257 IAK--QLAISQDVAKEIIQKFDNKTNF 281
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 38.1 bits (87), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 179 YCYYGGMIFIGQKRFRKA-LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
+ YY G I + + A +L+ + AP + K I+V L+ +
Sbjct: 255 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELL-----LGDI 309
Query: 238 PK---YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
P+ + +A +R+L PY +L G + ++ E+F D+ L+ ++
Sbjct: 310 PERKVFRQAALRRSLG----PYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRL 365
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
++ K I+ + Y +S QDIA + L+S ++AE V + +
Sbjct: 366 RHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAI 409
>sp|C0QB17|RS2_DESAH 30S ribosomal protein S2 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rpsB PE=3 SV=1
Length = 280
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 QSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYF 61
Q+I+ +++ + LS+ +D T ++DY K + E +L + + + K+ G ++
Sbjct: 105 QTIKKTISRFEFLSTIENDGT-IEDYPKKERVKMAKERVKLEACIGGISKMKNLPGAIFV 163
Query: 62 LEPCMYCSITKERANTLVPIIARFITSCSAEQIRYV 97
++P KE +PI+A T+C + I YV
Sbjct: 164 IDPKNESIAVKEGKRLGIPIVAVVDTNCDPDDIDYV 199
>sp|Q5S007|LRRK2_HUMAN Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens
GN=LRRK2 PE=1 SV=2
Length = 2527
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 43 LSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFI 102
+S + LD S++ +G L+P + C P + +F + S Q+ +VPE
Sbjct: 1057 MSCIANLDVSRNDIGPSVVLDPTVKC-----------PTLKQF--NLSYNQLSFVPENLT 1103
Query: 103 NVCKRYKDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL 160
+V ++ +Q++L I G+ P+ L ++ + S H+++L FL+ C + + A +
Sbjct: 1104 DVVEKL-EQLILEGNKISGICSPLRLKELKILNLSKNHISSLSENFLEACPKVESFSARM 1162
Query: 161 SVL 163
+ L
Sbjct: 1163 NFL 1165
>sp|A0Q0S0|RS2_CLONN 30S ribosomal protein S2 OS=Clostridium novyi (strain NT) GN=rpsB
PE=3 SV=1
Length = 233
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 35 LRSESTRL---LSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSA 91
LR+E +L L + LD S +LG ++ ++P + E N +P++A T+C
Sbjct: 137 LRNEKEKLEKNLGGIKNLDAS--NLGAIFIVDPRKEKNAIDEAKNLGIPVVAIVDTNCDP 194
Query: 92 EQIRYV 97
++I YV
Sbjct: 195 DEIDYV 200
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 13/164 (7%)
Query: 179 YCYYGGMIFIGQKRFRKA-LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
+ YY G I + + A +L+ + AP + K I+V L+ +
Sbjct: 251 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELL-----LGDI 305
Query: 238 PK---YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
P+ + +A +R+L PY +L G + + E+F D+ L+ ++
Sbjct: 306 PERKVFRQAALRRSLG----PYFQLTQAVRMGNLQRFGEVLVNFGEQFRQDHTFTLIIRL 361
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
++ K I+ + Y +S QDIA + L+S ++AE V + +
Sbjct: 362 RHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAI 405
>sp|A4XM02|RS2_CALS8 30S ribosomal protein S2 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpsB PE=3 SV=1
Length = 258
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 77/183 (42%), Gaps = 41/183 (22%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT---------APMSSINAIAV-EAYKKYIL 224
D Y YY G I KAL+L +N AP AI +A +K+++
Sbjct: 252 DLARYMYYQGRI--------KALQLDYNSAAGYFLQAQRKAPQEG--AIGFKQAVQKWVV 301
Query: 225 VSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP--------YMELVNTYNTGKIVELETYVQ 276
V + G+ +P + F QP Y++L G + ++
Sbjct: 302 VIGLLQGE----IPDRSV---------FRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLE 348
Query: 277 TNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ 336
+ +FE+D+ L L+ ++ ++ K I++++ Y + ++DIA + + + E E V +
Sbjct: 349 QFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITNETETEYIVAK 408
Query: 337 MVT 339
+
Sbjct: 409 AIA 411
>sp|B9MKQ1|RS2_CALBD 30S ribosomal protein S2 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpsB PE=3 SV=1
Length = 257
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|P20430|L_TACVF RNA-directed RNA polymerase L OS=Tacaribe virus (strain
Franze-Fernandez) GN=L PE=1 SV=1
Length = 2210
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 168 YEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E +D FL +C+ G ++ ++ +LL N+V +A + +KY+ V
Sbjct: 20 HEFAHQKDAFLSHCHSGSLL-------QEGFKLLSNLVELESCESHACHLNTCQKYVDVI 72
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGK-IVELETYVQTNREKFE 283
L HG TLPK + TGK ++ LET+V+ N E+FE
Sbjct: 73 LSDHGIPCPTLPKVIPDGFKL-----------------TGKTLILLETFVRVNPEEFE 113
>sp|Q5S006|LRRK2_MOUSE Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus
GN=Lrrk2 PE=1 SV=2
Length = 2527
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRY 108
LD S++ +G L+P M C K+ + S Q+ +PE V ++
Sbjct: 1063 LDASRNDIGPTVVLDPAMKCPSLKQ-------------LNLSYNQLSSIPENLAQVVEKL 1109
Query: 109 KDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
+Q+LL I G+ P+ L ++ + S H+ +L +FL+ C + + A ++ L
Sbjct: 1110 -EQLLLEGNKISGICSPLSLKELKILNLSKNHIPSLPGDFLEACSKVESFSARMNFL 1165
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 246 QRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQR 305
Q L+ Y +L G + V KF+ D+ L+ ++ ++ K I+
Sbjct: 311 QAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRS 370
Query: 306 LTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
+ +Y +S QDIA + L+S+++AE V + +
Sbjct: 371 IGLSYSRISPQDIAKRLMLDSAEDAEFIVSKAI 403
>sp|Q9UBM8|MGT4C_HUMAN Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Homo sapiens
GN=MGAT4C PE=2 SV=2
Length = 478
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|Q4R4A8|MGT4C_MACFA Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Macaca
fascicularis GN=MGAT4C PE=2 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|Q9D306|MGT4C_MOUSE Alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C OS=Mus musculus
GN=Mgat4c PE=2 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 102 INVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA 158
+N C D ++LE +R LTAI+K+ +S E + EF +L + K Y +
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHS 266
>sp|Q925J9|MED1_MOUSE Mediator of RNA polymerase II transcription subunit 1 OS=Mus
musculus GN=Med1 PE=1 SV=2
Length = 1575
Score = 32.7 bits (73), Expect = 3.9, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 225 VSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFES 284
V + HHG+ + P+ ++N + FS+ LVN YN +L+T + + E
Sbjct: 123 VKVAHHGENPVSCPELVQQLREKNFEEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQ 182
Query: 285 D 285
D
Sbjct: 183 D 183
>sp|P47719|GYRA_MYCGA DNA gyrase subunit A OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrA PE=3 SV=2
Length = 846
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 20 DITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPC--MYCSITKERANT 77
++ LK+ +K E++L+++ R+ DQLD H G + C + +I E+
Sbjct: 452 ELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQ--- 508
Query: 78 LVPIIARFITSCSAEQIRYVP 98
L+P+ IT S ++ +P
Sbjct: 509 LIPVETVVITRSSKGYLKRIP 529
>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription subunit 1 OS=Homo
sapiens GN=MED1 PE=1 SV=4
Length = 1581
Score = 32.3 bits (72), Expect = 6.0, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 225 VSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFES 284
V + HHG+ + P+ ++N FS+ LVN YN +L+T + + E
Sbjct: 123 VKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQ 182
Query: 285 D 285
D
Sbjct: 183 D 183
>sp|Q6XQI4|L_JUNIN RNA-directed RNA polymerase L OS=Junin arenavirus GN=L PE=3 SV=2
Length = 2210
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 24/116 (20%)
Query: 169 EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLI 228
E+ RD FL ++ + + + +LL ++V +A + + +K++ V L
Sbjct: 21 ELAYQRDIFLSQHHPSSLLL------EGFKLLSSLVELESCEAHACQINSDQKFVDVILS 74
Query: 229 HHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGK-IVELETYVQTNREKFE 283
HG TLPK + TGK ++ LET+V+ N ++FE
Sbjct: 75 DHGILCPTLPKVIPDGFKL-----------------TGKTLILLETFVRVNPDEFE 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,015,407
Number of Sequences: 539616
Number of extensions: 4280535
Number of successful extensions: 12527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 12457
Number of HSP's gapped (non-prelim): 55
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)