Query 019008
Match_columns 347
No_of_seqs 161 out of 397
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 9.6E-48 3.3E-52 386.3 11.6 285 49-344 130-433 (523)
2 3t5x_A PCI domain-containing p 99.9 2.6E-25 8.8E-30 200.6 13.4 161 173-344 10-178 (203)
3 3t5v_B Nuclear mRNA export pro 99.9 7.1E-23 2.4E-27 204.6 25.3 196 142-344 178-414 (455)
4 3txn_A 26S proteasome regulato 99.8 1.5E-17 5E-22 163.6 24.9 219 121-343 121-346 (394)
5 4b4t_P 26S proteasome regulato 99.7 5.7E-16 2E-20 154.7 15.6 202 136-343 173-389 (445)
6 4b4t_Q 26S proteasome regulato 99.5 4.6E-13 1.6E-17 129.0 19.9 229 109-343 142-386 (434)
7 4b4t_R RPN7, 26S proteasome re 99.4 1.1E-11 3.6E-16 123.2 18.9 226 115-343 144-377 (429)
8 4b0z_A RPN12, 26S proteasome r 99.3 1.8E-11 6E-16 112.0 10.7 192 147-344 14-225 (229)
9 4b4t_O 26S proteasome regulato 99.1 1.2E-09 4.1E-14 107.3 14.0 195 144-343 131-337 (393)
10 1ufm_A COP9 complex subunit 4; 98.2 1.7E-06 5.9E-11 66.5 5.2 48 295-343 13-60 (84)
11 2xev_A YBGF; tetratricopeptide 97.3 0.0023 7.9E-08 49.9 11.2 95 114-209 14-109 (129)
12 3chm_A COP9 signalosome comple 97.2 0.00074 2.5E-08 58.5 7.4 81 254-343 60-141 (169)
13 3qky_A Outer membrane assembly 97.0 0.01 3.5E-07 52.6 13.6 95 114-209 27-130 (261)
14 3gyz_A Chaperone protein IPGC; 96.9 0.015 5.1E-07 48.5 12.4 128 74-209 7-137 (151)
15 2vgx_A Chaperone SYCD; alterna 96.6 0.02 6.8E-07 47.0 11.2 92 111-209 30-122 (148)
16 2xcb_A PCRH, regulatory protei 96.6 0.018 6.1E-07 46.3 10.7 91 112-209 28-119 (142)
17 4gco_A Protein STI-1; structur 96.5 0.017 5.9E-07 46.0 9.9 91 112-209 23-114 (126)
18 1qqe_A Vesicular transport pro 96.5 0.046 1.6E-06 49.7 13.7 174 109-288 84-273 (292)
19 3sz7_A HSC70 cochaperone (SGT) 96.4 0.059 2E-06 44.1 12.9 92 113-211 22-114 (164)
20 2ho1_A Type 4 fimbrial biogene 96.3 0.44 1.5E-05 40.9 19.4 208 48-285 30-242 (252)
21 1elr_A TPR2A-domain of HOP; HO 96.3 0.025 8.4E-07 43.1 9.1 90 114-207 16-110 (131)
22 1hxi_A PEX5, peroxisome target 96.2 0.02 6.9E-07 45.2 8.6 89 113-208 28-117 (121)
23 4gcn_A Protein STI-1; structur 96.2 0.016 5.5E-07 46.2 8.0 96 109-208 15-115 (127)
24 3upv_A Heat shock protein STI1 96.1 0.037 1.3E-06 43.0 9.7 87 113-206 15-102 (126)
25 3rkv_A Putative peptidylprolyl 96.1 0.017 5.7E-07 47.4 7.7 67 140-209 63-130 (162)
26 2dba_A Smooth muscle cell asso 96.1 0.036 1.2E-06 43.5 9.4 93 113-209 39-132 (148)
27 3k9i_A BH0479 protein; putativ 96.1 0.0093 3.2E-07 46.4 5.7 88 116-209 4-94 (117)
28 1elw_A TPR1-domain of HOP; HOP 96.1 0.068 2.3E-06 39.7 10.5 89 114-209 16-105 (118)
29 3ieg_A DNAJ homolog subfamily 96.0 0.3 1E-05 43.8 16.4 97 110-209 242-339 (359)
30 3ro2_A PINS homolog, G-protein 96.0 0.41 1.4E-05 42.1 17.1 112 112-224 15-131 (338)
31 3u4t_A TPR repeat-containing p 95.9 0.18 6.2E-06 43.9 14.3 150 113-279 14-169 (272)
32 3ro3_A PINS homolog, G-protein 95.8 0.14 4.7E-06 40.0 11.9 95 111-205 58-157 (164)
33 3gw4_A Uncharacterized protein 95.8 0.2 6.9E-06 41.4 13.3 127 74-206 44-176 (203)
34 2ifu_A Gamma-SNAP; membrane fu 95.8 0.12 3.9E-06 47.3 12.7 155 112-273 86-253 (307)
35 3sf4_A G-protein-signaling mod 95.8 0.54 1.8E-05 43.1 17.4 98 112-209 19-120 (406)
36 2fbn_A 70 kDa peptidylprolyl i 95.7 0.077 2.6E-06 44.8 10.7 93 114-209 50-155 (198)
37 2kat_A Uncharacterized protein 95.7 0.033 1.1E-06 42.7 7.6 82 121-209 4-86 (115)
38 2vyi_A SGTA protein; chaperone 95.7 0.083 2.8E-06 39.9 9.9 89 114-209 24-113 (131)
39 3q49_B STIP1 homology and U bo 95.7 0.065 2.2E-06 41.7 9.5 88 114-208 21-109 (137)
40 2lni_A Stress-induced-phosphop 95.7 0.053 1.8E-06 41.5 8.7 90 113-209 27-117 (133)
41 3q15_A PSP28, response regulat 95.7 1.3 4.6E-05 41.0 21.7 92 114-205 153-250 (378)
42 3ulq_A Response regulator aspa 95.7 0.24 8.2E-06 46.2 14.7 166 113-284 114-296 (383)
43 3q15_A PSP28, response regulat 95.6 0.28 9.5E-06 45.8 15.1 169 113-287 112-296 (378)
44 3qky_A Outer membrane assembly 95.6 0.67 2.3E-05 40.5 16.9 94 115-209 110-228 (261)
45 2pzi_A Probable serine/threoni 95.5 0.15 5.1E-06 52.6 13.7 154 114-289 403-568 (681)
46 2kck_A TPR repeat; tetratricop 95.5 0.033 1.1E-06 41.2 6.5 91 114-209 18-110 (112)
47 2e2e_A Formate-dependent nitri 95.4 0.15 5.3E-06 41.8 11.2 90 113-209 55-148 (177)
48 2qfc_A PLCR protein; TPR, HTH, 95.4 0.29 9.8E-06 44.1 13.8 96 111-206 164-266 (293)
49 4a1s_A PINS, partner of inscut 95.4 1 3.4E-05 41.7 17.8 161 118-284 199-375 (411)
50 1na0_A Designed protein CTPR3; 95.3 0.19 6.5E-06 37.5 10.6 89 114-209 21-110 (125)
51 3ro3_A PINS homolog, G-protein 95.3 0.15 5E-06 39.8 10.3 92 114-205 21-117 (164)
52 4a1s_A PINS, partner of inscut 95.3 0.7 2.4E-05 42.8 16.4 96 110-205 56-154 (411)
53 3vtx_A MAMA; tetratricopeptide 95.2 0.15 5E-06 42.0 10.5 31 178-208 108-139 (184)
54 1a17_A Serine/threonine protei 95.2 0.2 6.8E-06 39.9 11.0 89 114-209 25-114 (166)
55 2vq2_A PILW, putative fimbrial 95.2 0.39 1.3E-05 39.9 13.2 91 114-209 54-146 (225)
56 3u3w_A Transcriptional activat 95.2 0.53 1.8E-05 42.3 14.9 92 114-205 167-265 (293)
57 4i17_A Hypothetical protein; T 95.2 0.08 2.7E-06 45.4 8.9 94 111-208 51-149 (228)
58 3uq3_A Heat shock protein STI1 95.2 0.27 9.1E-06 42.0 12.2 97 113-209 49-172 (258)
59 2l6j_A TPR repeat-containing p 95.1 0.11 3.6E-06 38.7 8.4 80 142-224 6-86 (111)
60 1hh8_A P67PHOX, NCF-2, neutrop 95.1 0.16 5.5E-06 42.7 10.5 94 112-209 47-154 (213)
61 3edt_B KLC 2, kinesin light ch 95.1 0.5 1.7E-05 40.6 13.9 97 109-205 92-197 (283)
62 2yhc_A BAMD, UPF0169 lipoprote 95.0 0.12 4E-06 44.8 9.6 96 114-210 16-130 (225)
63 3urz_A Uncharacterized protein 95.0 0.22 7.5E-06 42.6 11.1 93 113-209 65-190 (208)
64 3nf1_A KLC 1, kinesin light ch 95.0 0.17 5.9E-06 44.6 10.7 100 108-207 159-309 (311)
65 3as5_A MAMA; tetratricopeptide 94.8 0.59 2E-05 37.3 12.9 90 113-209 87-177 (186)
66 3sf4_A G-protein-signaling mod 94.8 2.3 7.7E-05 38.7 21.5 164 118-287 163-342 (406)
67 4eqf_A PEX5-related protein; a 94.8 0.22 7.7E-06 45.6 11.4 92 113-209 188-280 (365)
68 2xev_A YBGF; tetratricopeptide 94.8 0.055 1.9E-06 41.7 6.2 66 144-209 6-72 (129)
69 3ro2_A PINS homolog, G-protein 94.7 1.9 6.7E-05 37.6 20.1 116 118-234 159-280 (338)
70 3ma5_A Tetratricopeptide repea 94.7 0.048 1.6E-06 41.3 5.5 66 140-208 7-73 (100)
71 3ulq_A Response regulator aspa 94.7 2.6 9E-05 38.9 23.1 95 111-205 152-252 (383)
72 3nf1_A KLC 1, kinesin light ch 94.7 0.29 1E-05 43.0 11.5 95 112-206 79-182 (311)
73 2vq2_A PILW, putative fimbrial 94.7 0.24 8.1E-06 41.3 10.3 93 110-207 84-178 (225)
74 1p5q_A FKBP52, FK506-binding p 94.7 0.18 6.1E-06 47.1 10.4 98 109-209 154-263 (336)
75 1ihg_A Cyclophilin 40; ppiase 94.7 0.098 3.4E-06 49.9 8.7 94 113-209 234-340 (370)
76 2y4t_A DNAJ homolog subfamily 94.7 1.4 4.6E-05 41.3 16.7 97 109-209 264-362 (450)
77 4b4t_Q 26S proteasome regulato 94.6 0.28 9.5E-06 46.1 11.8 128 74-208 73-207 (434)
78 3u4t_A TPR repeat-containing p 94.6 0.1 3.5E-06 45.5 8.1 91 114-208 49-140 (272)
79 3gw4_A Uncharacterized protein 94.5 0.7 2.4E-05 38.0 12.9 93 113-205 37-135 (203)
80 3vtx_A MAMA; tetratricopeptide 94.5 0.096 3.3E-06 43.2 7.4 88 114-208 85-173 (184)
81 4eqf_A PEX5-related protein; a 94.5 0.71 2.4E-05 42.1 14.0 93 113-209 110-246 (365)
82 2qfc_A PLCR protein; TPR, HTH, 94.5 0.48 1.7E-05 42.5 12.6 93 113-205 126-224 (293)
83 4i17_A Hypothetical protein; T 94.5 0.68 2.3E-05 39.4 13.0 90 114-209 19-109 (228)
84 1kt0_A FKBP51, 51 kDa FK506-bi 94.4 0.2 6.8E-06 49.0 10.5 98 109-209 275-384 (457)
85 2ond_A Cleavage stimulation fa 94.4 2.7 9.3E-05 37.8 18.0 147 119-281 81-232 (308)
86 2kc7_A BFR218_protein; tetratr 94.4 0.11 3.8E-06 38.3 6.8 62 146-210 6-69 (99)
87 2fo7_A Synthetic consensus TPR 94.3 0.16 5.4E-06 38.2 7.8 88 114-208 47-135 (136)
88 4ga2_A E3 SUMO-protein ligase 94.3 0.054 1.8E-06 44.2 5.3 84 119-209 14-98 (150)
89 3ieg_A DNAJ homolog subfamily 94.3 0.4 1.4E-05 42.9 11.6 84 115-205 133-216 (359)
90 2pl2_A Hypothetical conserved 94.3 0.18 6.2E-06 43.5 8.9 86 116-209 98-184 (217)
91 2ho1_A Type 4 fimbrial biogene 94.3 0.28 9.6E-06 42.1 10.1 92 113-209 116-208 (252)
92 4abn_A Tetratricopeptide repea 94.1 1.2 4.1E-05 43.4 15.5 90 112-209 112-212 (474)
93 3hym_B Cell division cycle pro 94.1 0.19 6.5E-06 44.7 8.9 91 114-208 171-268 (330)
94 3as5_A MAMA; tetratricopeptide 94.0 0.17 5.9E-06 40.6 7.8 90 113-209 53-143 (186)
95 3edt_B KLC 2, kinesin light ch 94.0 0.25 8.6E-06 42.6 9.4 129 74-206 19-156 (283)
96 2pl2_A Hypothetical conserved 94.0 0.22 7.5E-06 42.9 8.9 91 112-209 15-117 (217)
97 2fo7_A Synthetic consensus TPR 94.0 0.31 1E-05 36.6 8.8 88 114-208 13-101 (136)
98 2gw1_A Mitochondrial precursor 94.0 3.6 0.00012 38.9 18.3 91 111-209 246-337 (514)
99 2xpi_A Anaphase-promoting comp 93.9 2.6 9E-05 41.0 17.7 93 114-209 487-583 (597)
100 3uq3_A Heat shock protein STI1 93.9 0.11 3.8E-06 44.5 6.7 89 111-206 148-237 (258)
101 1na3_A Designed protein CTPR2; 93.9 0.15 5E-06 36.5 6.4 67 140-209 9-76 (91)
102 3urz_A Uncharacterized protein 93.8 0.12 4.3E-06 44.2 6.9 65 142-209 56-121 (208)
103 2c2l_A CHIP, carboxy terminus 93.8 0.24 8.3E-06 44.8 9.1 90 113-209 15-105 (281)
104 2dba_A Smooth muscle cell asso 93.7 0.15 5E-06 39.8 6.5 70 140-209 28-98 (148)
105 2h6f_A Protein farnesyltransfe 93.6 3 0.0001 39.7 17.0 85 118-209 148-233 (382)
106 1xnf_A Lipoprotein NLPI; TPR, 93.6 0.34 1.1E-05 42.0 9.3 91 112-209 53-144 (275)
107 4b4t_T 26S proteasome regulato 93.5 0.22 7.7E-06 46.0 8.3 78 257-336 146-223 (274)
108 1wao_1 Serine/threonine protei 93.2 0.36 1.2E-05 47.5 10.0 89 115-210 19-108 (477)
109 3gyz_A Chaperone protein IPGC; 93.2 0.18 6.1E-06 41.8 6.6 66 142-210 38-104 (151)
110 2q7f_A YRRB protein; TPR, prot 93.2 0.19 6.4E-06 42.7 6.9 88 114-208 103-191 (243)
111 2xpi_A Anaphase-promoting comp 93.1 5.8 0.0002 38.5 18.6 85 114-205 419-503 (597)
112 2xcb_A PCRH, regulatory protei 93.1 0.22 7.4E-06 39.7 6.8 65 142-209 20-85 (142)
113 1qqe_A Vesicular transport pro 93.1 1.7 5.7E-05 39.1 13.5 100 110-209 125-232 (292)
114 2vgx_A Chaperone SYCD; alterna 93.0 0.21 7.3E-06 40.6 6.8 68 140-210 21-89 (148)
115 1rz4_A Eukaryotic translation 93.0 0.2 7E-06 45.0 7.1 75 256-336 102-176 (226)
116 1xnf_A Lipoprotein NLPI; TPR, 92.9 0.15 5.2E-06 44.2 6.0 87 120-209 23-110 (275)
117 1fch_A Peroxisomal targeting s 92.9 0.34 1.2E-05 44.0 8.6 86 118-208 197-283 (368)
118 3upv_A Heat shock protein STI1 92.9 0.22 7.6E-06 38.3 6.4 65 142-209 6-71 (126)
119 2q7f_A YRRB protein; TPR, prot 92.9 0.33 1.1E-05 41.1 8.1 90 113-209 68-158 (243)
120 3qou_A Protein YBBN; thioredox 92.8 0.66 2.3E-05 41.9 10.5 93 112-208 127-251 (287)
121 2y4t_A DNAJ homolog subfamily 92.8 6 0.00021 36.7 22.1 153 113-281 71-240 (450)
122 3fp2_A TPR repeat-containing p 92.8 2.5 8.6E-05 40.4 15.1 89 113-209 254-343 (537)
123 2lni_A Stress-induced-phosphop 92.7 0.37 1.3E-05 36.6 7.4 69 138-209 14-83 (133)
124 1hxi_A PEX5, peroxisome target 92.6 0.17 5.9E-06 39.6 5.4 63 144-209 21-84 (121)
125 2e2e_A Formate-dependent nitri 92.6 0.51 1.7E-05 38.5 8.6 53 153-208 23-76 (177)
126 4abn_A Tetratricopeptide repea 92.6 0.77 2.6E-05 44.8 11.3 90 116-209 193-291 (474)
127 4gco_A Protein STI-1; structur 92.6 0.25 8.7E-06 39.0 6.4 68 139-209 12-80 (126)
128 3q49_B STIP1 homology and U bo 92.5 0.27 9.1E-06 38.1 6.4 67 140-209 9-76 (137)
129 3mkr_A Coatomer subunit epsilo 92.5 0.74 2.5E-05 41.8 10.3 91 108-209 71-163 (291)
130 3u3w_A Transcriptional activat 92.4 0.57 2E-05 42.0 9.4 93 113-205 126-224 (293)
131 3sz7_A HSC70 cochaperone (SGT) 92.4 0.23 8E-06 40.3 6.1 67 140-209 11-78 (164)
132 4ga2_A E3 SUMO-protein ligase 92.4 0.29 9.9E-06 39.7 6.6 89 114-209 43-133 (150)
133 1elr_A TPR2A-domain of HOP; HO 92.2 0.54 1.9E-05 35.2 7.8 64 142-208 6-70 (131)
134 1pc2_A Mitochondria fission pr 92.2 0.51 1.7E-05 39.8 8.1 64 145-209 37-104 (152)
135 1elw_A TPR1-domain of HOP; HOP 92.0 0.3 1E-05 36.0 6.0 64 142-208 6-70 (118)
136 3cv0_A Peroxisome targeting si 91.8 0.39 1.3E-05 42.5 7.4 88 115-209 151-239 (327)
137 4gcn_A Protein STI-1; structur 91.7 0.23 7.8E-06 39.2 5.1 64 142-208 10-74 (127)
138 1hh8_A P67PHOX, NCF-2, neutrop 91.7 0.31 1.1E-05 40.9 6.3 86 114-209 18-104 (213)
139 2yhc_A BAMD, UPF0169 lipoprote 91.7 0.37 1.3E-05 41.6 6.9 94 115-208 109-216 (225)
140 2if4_A ATFKBP42; FKBP-like, al 91.5 0.32 1.1E-05 45.4 6.7 92 114-209 191-297 (338)
141 3mkr_A Coatomer subunit epsilo 91.4 0.51 1.7E-05 42.9 7.9 113 110-234 138-251 (291)
142 4gyw_A UDP-N-acetylglucosamine 91.3 0.71 2.4E-05 48.3 9.8 93 110-209 51-144 (723)
143 3hym_B Cell division cycle pro 91.2 0.85 2.9E-05 40.3 9.0 85 117-208 106-191 (330)
144 2ifu_A Gamma-SNAP; membrane fu 91.0 8.4 0.00029 34.6 16.5 94 116-209 129-227 (307)
145 2kck_A TPR repeat; tetratricop 91.0 0.25 8.4E-06 36.2 4.4 63 143-208 9-72 (112)
146 1w3b_A UDP-N-acetylglucosamine 90.8 0.79 2.7E-05 42.3 8.7 87 115-208 46-133 (388)
147 2r5s_A Uncharacterized protein 90.8 0.56 1.9E-05 38.6 6.9 32 177-208 108-140 (176)
148 2vyi_A SGTA protein; chaperone 90.7 0.67 2.3E-05 34.6 6.8 67 140-209 12-79 (131)
149 1fch_A Peroxisomal targeting s 90.4 0.88 3E-05 41.2 8.4 89 113-208 228-317 (368)
150 1w3b_A UDP-N-acetylglucosamine 90.3 0.78 2.7E-05 42.4 8.1 92 111-209 246-338 (388)
151 4gyw_A UDP-N-acetylglucosamine 90.0 0.82 2.8E-05 47.8 8.8 95 107-208 82-177 (723)
152 2vsy_A XCC0866; transferase, g 90.0 0.97 3.3E-05 44.8 9.0 94 108-208 63-160 (568)
153 1hz4_A MALT regulatory protein 89.8 3.5 0.00012 37.7 12.2 94 112-205 103-202 (373)
154 2ond_A Cleavage stimulation fa 89.7 3.3 0.00011 37.2 11.8 155 114-288 111-277 (308)
155 3k9i_A BH0479 protein; putativ 89.6 0.38 1.3E-05 36.8 4.6 57 153-209 3-60 (117)
156 2hr2_A Hypothetical protein; a 89.6 1.7 5.7E-05 36.8 8.8 107 114-223 23-149 (159)
157 4f3v_A ESX-1 secretion system 89.6 0.55 1.9E-05 43.6 6.3 94 108-207 108-201 (282)
158 1na0_A Designed protein CTPR3; 89.5 0.88 3E-05 33.6 6.5 67 140-209 9-76 (125)
159 4g1t_A Interferon-induced prot 89.3 2.3 7.8E-05 40.1 10.8 98 121-222 319-418 (472)
160 3cv0_A Peroxisome targeting si 88.8 0.99 3.4E-05 39.8 7.3 89 114-209 33-122 (327)
161 1a17_A Serine/threonine protei 88.6 1.9 6.5E-05 33.9 8.3 89 112-205 57-145 (166)
162 3ma5_A Tetratricopeptide repea 88.3 2.7 9.1E-05 31.2 8.5 34 176-209 6-40 (100)
163 2gw1_A Mitochondrial precursor 88.2 1.3 4.5E-05 41.9 8.2 89 112-208 16-105 (514)
164 1zu2_A Mitochondrial import re 87.4 0.99 3.4E-05 38.2 6.0 54 156-212 62-127 (158)
165 2v5f_A Prolyl 4-hydroxylase su 86.7 1.9 6.6E-05 32.7 6.9 64 146-209 11-79 (104)
166 3qou_A Protein YBBN; thioredox 86.5 5.3 0.00018 35.7 10.9 80 123-208 103-183 (287)
167 2r5s_A Uncharacterized protein 86.3 1.4 5E-05 36.0 6.4 80 121-205 93-172 (176)
168 2fbn_A 70 kDa peptidylprolyl i 86.2 1.5 5.2E-05 36.5 6.6 68 142-209 40-121 (198)
169 3rkv_A Putative peptidylprolyl 86.1 1.1 3.8E-05 36.1 5.5 66 144-209 15-96 (162)
170 3fp2_A TPR repeat-containing p 85.5 3.9 0.00013 39.0 10.0 99 98-208 25-124 (537)
171 2c2l_A CHIP, carboxy terminus 85.4 1.3 4.6E-05 39.7 6.2 65 142-209 6-71 (281)
172 4fhn_B Nucleoporin NUP120; pro 84.6 3.3 0.00011 45.3 9.9 59 140-205 812-870 (1139)
173 2ooe_A Cleavage stimulation fa 84.6 25 0.00087 33.9 15.6 84 120-209 304-388 (530)
174 3n71_A Histone lysine methyltr 84.3 4 0.00014 40.5 9.6 91 114-205 321-421 (490)
175 1nzn_A CGI-135 protein, fissio 83.5 1.8 6.2E-05 35.2 5.5 63 146-209 41-107 (126)
176 1ihg_A Cyclophilin 40; ppiase 83.4 10 0.00034 35.7 11.7 67 142-208 225-305 (370)
177 1ouv_A Conserved hypothetical 83.2 3.9 0.00013 35.6 8.2 16 326-341 237-252 (273)
178 3ly7_A Transcriptional activat 82.8 10 0.00036 36.3 11.4 65 140-208 277-342 (372)
179 1qbj_A Protein (double-strande 82.7 3.2 0.00011 30.9 6.2 44 300-344 12-58 (81)
180 3t5v_A Nuclear mRNA export pro 82.6 2.4 8.2E-05 39.8 6.8 68 266-336 177-248 (316)
181 2vsy_A XCC0866; transferase, g 82.5 4.5 0.00015 39.8 9.2 89 114-209 35-124 (568)
182 1hz4_A MALT regulatory protein 82.0 19 0.00066 32.5 12.8 91 114-205 227-321 (373)
183 2h6f_A Protein farnesyltransfe 81.5 2 6.8E-05 41.0 6.0 108 94-209 90-199 (382)
184 4g1t_A Interferon-induced prot 81.3 3.4 0.00012 38.9 7.5 90 114-210 187-281 (472)
185 1qgp_A Protein (double strande 81.0 2.4 8.3E-05 31.1 5.0 43 301-344 17-62 (77)
186 2ooe_A Cleavage stimulation fa 80.9 12 0.00041 36.3 11.5 92 113-209 332-424 (530)
187 4f3v_A ESX-1 secretion system 80.4 2.9 9.9E-05 38.6 6.4 64 140-207 102-165 (282)
188 2pzi_A Probable serine/threoni 79.3 3.4 0.00012 42.3 7.2 30 179-208 536-566 (681)
189 3qww_A SET and MYND domain-con 79.0 2.8 9.6E-05 40.9 6.2 87 118-205 314-410 (433)
190 1ouv_A Conserved hypothetical 79.0 6.5 0.00022 34.1 8.1 81 115-206 55-143 (273)
191 2l6j_A TPR repeat-containing p 78.8 1.5 5.2E-05 32.1 3.3 87 112-202 14-103 (111)
192 1p5q_A FKBP52, FK506-binding p 78.0 4.2 0.00014 37.5 6.8 70 140-209 147-229 (336)
193 3qwp_A SET and MYND domain-con 77.8 4.1 0.00014 39.6 6.9 88 117-205 302-399 (429)
194 2jt1_A PEFI protein; solution 77.2 4.1 0.00014 30.0 5.2 33 311-344 23-55 (77)
195 1na3_A Designed protein CTPR2; 77.0 3.1 0.00011 29.1 4.5 35 175-209 7-42 (91)
196 2heo_A Z-DNA binding protein 1 76.2 4.7 0.00016 28.5 5.2 32 311-343 24-55 (67)
197 3rjv_A Putative SEL1 repeat pr 75.8 34 0.0012 28.6 11.7 86 117-209 68-161 (212)
198 3bee_A Putative YFRE protein; 75.6 8.9 0.0003 28.6 6.9 64 142-208 8-75 (93)
199 1kt0_A FKBP51, 51 kDa FK506-bi 71.8 6.5 0.00022 38.0 6.6 70 140-209 268-350 (457)
200 3o48_A Mitochondria fission 1 71.4 6.5 0.00022 32.3 5.4 37 173-209 74-111 (134)
201 2htj_A P fimbrial regulatory p 71.2 6.1 0.00021 28.7 4.9 34 310-344 12-45 (81)
202 2k02_A Ferrous iron transport 69.8 6.1 0.00021 29.9 4.6 42 302-344 6-47 (87)
203 3txn_A 26S proteasome regulato 69.8 27 0.00093 33.6 10.4 67 141-207 100-169 (394)
204 2hr2_A Hypothetical protein; a 69.0 6.7 0.00023 33.0 5.2 64 143-206 14-86 (159)
205 3ffl_A Anaphase-promoting comp 68.0 5.6 0.00019 33.9 4.5 60 145-204 25-90 (167)
206 3mv2_B Coatomer subunit epsilo 67.9 27 0.00093 32.4 9.7 155 108-279 142-307 (310)
207 1xn7_A Hypothetical protein YH 67.7 8.4 0.00029 28.4 4.9 43 301-344 5-47 (78)
208 2kat_A Uncharacterized protein 67.4 6.7 0.00023 29.2 4.5 33 177-209 19-52 (115)
209 1oyi_A Double-stranded RNA-bin 67.2 6.6 0.00023 29.4 4.3 31 313-344 31-61 (82)
210 1y8m_A FIS1; mitochondria, unk 66.9 7.7 0.00026 32.2 5.0 35 175-209 75-110 (144)
211 1wao_1 Serine/threonine protei 65.8 4.2 0.00014 39.8 3.8 58 149-209 15-73 (477)
212 2cyy_A Putative HTH-type trans 62.8 12 0.00041 30.4 5.5 44 302-346 11-54 (151)
213 1xi4_A Clathrin heavy chain; a 62.1 1.3E+02 0.0045 34.1 15.0 58 140-205 1105-1162(1630)
214 2kc7_A BFR218_protein; tetratr 62.1 11 0.00038 26.8 4.8 80 114-208 12-93 (99)
215 1xi4_A Clathrin heavy chain; a 61.6 71 0.0024 36.3 12.7 79 114-204 997-1076(1630)
216 2e1c_A Putative HTH-type trans 60.3 14 0.00049 30.9 5.7 43 303-346 32-74 (171)
217 2cg4_A Regulatory protein ASNC 60.2 10 0.00035 30.8 4.7 43 302-345 12-54 (152)
218 4g26_A Pentatricopeptide repea 60.1 25 0.00087 34.5 8.4 23 144-166 30-52 (501)
219 2pn6_A ST1022, 150AA long hypo 59.3 14 0.00048 29.7 5.4 44 302-346 7-50 (150)
220 2cfx_A HTH-type transcriptiona 58.9 12 0.00041 30.2 4.8 42 302-344 9-50 (144)
221 1klx_A Cysteine rich protein B 58.9 28 0.00096 27.2 7.0 75 121-206 44-126 (138)
222 2xm6_A Protein corresponding t 58.7 28 0.00097 33.1 8.3 58 143-205 114-179 (490)
223 1ub9_A Hypothetical protein PH 57.4 20 0.00069 26.2 5.6 49 295-344 13-61 (100)
224 2p5v_A Transcriptional regulat 56.8 14 0.00046 30.4 4.9 42 302-344 14-55 (162)
225 2v5f_A Prolyl 4-hydroxylase su 55.3 22 0.00076 26.4 5.6 62 107-168 10-74 (104)
226 2dbb_A Putative HTH-type trans 54.8 15 0.00052 29.6 4.8 41 303-344 14-54 (151)
227 3d9j_A RNA-binding protein 16; 54.8 32 0.0011 28.1 6.8 68 1-69 1-73 (145)
228 2ia0_A Putative HTH-type trans 54.7 15 0.00052 30.7 4.9 41 303-344 22-62 (171)
229 1xmk_A Double-stranded RNA-spe 54.4 15 0.00051 27.1 4.2 45 300-344 13-57 (79)
230 2if4_A ATFKBP42; FKBP-like, al 52.9 11 0.00038 34.6 4.1 68 142-209 181-263 (338)
231 3mv2_B Coatomer subunit epsilo 52.8 33 0.0011 31.9 7.3 112 112-234 110-228 (310)
232 1z05_A Transcriptional regulat 52.6 21 0.00073 34.2 6.2 47 297-344 38-84 (429)
233 2w25_A Probable transcriptiona 52.5 18 0.00061 29.2 4.9 41 303-344 12-52 (150)
234 1z6r_A MLC protein; transcript 51.7 19 0.00063 34.2 5.6 47 297-344 15-61 (406)
235 3rjv_A Putative SEL1 repeat pr 51.4 32 0.0011 28.8 6.6 80 115-206 31-118 (212)
236 4g26_A Pentatricopeptide repea 51.2 38 0.0013 33.2 8.0 166 113-295 37-220 (501)
237 3qwp_A SET and MYND domain-con 50.5 21 0.00073 34.4 5.8 57 148-204 295-356 (429)
238 3dra_A Protein farnesyltransfe 50.2 47 0.0016 30.5 7.9 77 146-229 38-118 (306)
239 1ucr_A Protein DSVD; dissimila 50.0 14 0.00049 27.2 3.4 38 309-346 18-55 (78)
240 1sfx_A Conserved hypothetical 49.0 32 0.0011 25.2 5.5 34 310-344 32-65 (109)
241 3cuo_A Uncharacterized HTH-typ 48.9 22 0.00074 26.0 4.5 44 300-344 26-69 (99)
242 3qww_A SET and MYND domain-con 48.5 12 0.00042 36.3 3.7 52 153-204 311-367 (433)
243 1klx_A Cysteine rich protein B 47.7 15 0.00051 28.9 3.6 75 119-206 12-90 (138)
244 1i1g_A Transcriptional regulat 47.5 31 0.0011 27.2 5.5 35 309-344 15-49 (141)
245 2v79_A DNA replication protein 47.1 12 0.00042 30.4 2.9 34 311-345 50-83 (135)
246 3u64_A Protein TP_0956; tetrat 46.8 17 0.00058 33.8 4.2 79 129-209 189-272 (301)
247 1y0u_A Arsenical resistance op 46.3 35 0.0012 25.1 5.3 33 311-344 42-74 (96)
248 4gq2_M Nucleoporin NUP120; bet 46.0 29 0.00098 37.2 6.4 55 144-205 814-868 (950)
249 2d1h_A ST1889, 109AA long hypo 45.1 31 0.0011 25.3 4.9 44 300-344 24-67 (109)
250 3e4b_A ALGK; tetratricopeptide 44.1 99 0.0034 29.3 9.5 13 254-266 319-331 (452)
251 3n71_A Histone lysine methyltr 42.2 23 0.00077 35.0 4.6 56 150-205 319-379 (490)
252 1tty_A Sigma-A, RNA polymerase 42.2 40 0.0014 24.5 5.0 51 288-339 9-64 (87)
253 1u2w_A CADC repressor, cadmium 41.0 49 0.0017 25.7 5.6 48 296-344 40-87 (122)
254 4gns_B Protein CSD3, chitin bi 40.8 77 0.0026 33.2 8.5 54 147-203 344-397 (754)
255 2k9l_A RNA polymerase sigma fa 40.3 24 0.00081 25.6 3.3 26 309-335 45-70 (76)
256 2oqg_A Possible transcriptiona 40.2 41 0.0014 25.2 5.0 43 300-344 23-65 (114)
257 2vn2_A DNAD, chromosome replic 40.1 22 0.00075 28.2 3.5 32 313-345 52-83 (128)
258 2xm6_A Protein corresponding t 40.1 79 0.0027 29.9 8.1 26 180-205 366-395 (490)
259 3dra_A Protein farnesyltransfe 39.4 1.3E+02 0.0043 27.5 9.1 116 99-226 30-156 (306)
260 1wi9_A Protein C20ORF116 homol 37.3 34 0.0012 24.8 3.7 33 311-344 20-52 (72)
261 2x4h_A Hypothetical protein SS 37.2 48 0.0017 25.8 5.1 41 303-344 22-62 (139)
262 3jth_A Transcription activator 36.5 41 0.0014 24.7 4.3 33 311-344 35-67 (98)
263 4b4t_R RPN7, 26S proteasome re 35.7 70 0.0024 30.6 6.9 86 122-207 110-198 (429)
264 1on2_A Transcriptional regulat 34.8 55 0.0019 25.6 5.1 39 305-344 15-53 (142)
265 3e4b_A ALGK; tetratricopeptide 34.5 2.9E+02 0.01 25.9 12.4 47 117-167 194-244 (452)
266 3ax2_A Mitochondrial import re 33.5 67 0.0023 23.3 4.8 27 182-208 22-49 (73)
267 2y75_A HTH-type transcriptiona 33.3 58 0.002 25.3 5.0 33 311-344 25-57 (129)
268 2kfs_A Conserved hypothetical 33.2 27 0.00092 29.0 2.9 29 311-344 30-58 (148)
269 1b89_A Protein (clathrin heavy 32.8 32 0.0011 33.7 3.9 95 119-228 78-189 (449)
270 1x3u_A Transcriptional regulat 32.8 1.1E+02 0.0039 21.0 6.1 48 290-338 9-56 (79)
271 2hoe_A N-acetylglucosamine kin 32.5 18 0.00062 34.1 2.0 40 303-344 25-64 (380)
272 1r1u_A CZRA, repressor protein 32.3 61 0.0021 24.3 4.8 33 311-344 38-70 (106)
273 3iuo_A ATP-dependent DNA helic 32.0 41 0.0014 26.6 3.8 31 311-342 31-61 (122)
274 1sfu_A 34L protein; protein/Z- 31.3 48 0.0016 24.3 3.7 31 313-344 30-60 (75)
275 2qvo_A Uncharacterized protein 30.9 77 0.0026 23.1 5.0 30 313-343 31-60 (95)
276 4b4t_P 26S proteasome regulato 30.9 79 0.0027 30.5 6.4 63 142-204 139-204 (445)
277 1xd7_A YWNA; structural genomi 30.7 51 0.0018 26.5 4.3 38 305-344 17-54 (145)
278 2qlz_A Transcription factor PF 30.6 82 0.0028 27.8 5.9 35 308-343 174-208 (232)
279 3q7a_A Farnesyltransferase alp 30.6 3.3E+02 0.011 25.3 11.2 124 93-229 46-174 (349)
280 1uly_A Hypothetical protein PH 30.5 81 0.0028 26.8 5.7 44 300-345 22-65 (192)
281 1dce_A Protein (RAB geranylger 30.5 1E+02 0.0035 30.6 7.3 68 152-226 40-119 (567)
282 3bdd_A Regulatory protein MARR 30.3 80 0.0027 24.2 5.3 34 310-344 43-76 (142)
283 2lkp_A Transcriptional regulat 30.0 74 0.0025 24.1 5.0 33 311-344 44-76 (119)
284 2nnn_A Probable transcriptiona 29.7 88 0.003 23.8 5.5 33 311-344 51-83 (140)
285 3eyi_A Z-DNA-binding protein 1 29.6 40 0.0014 24.3 2.9 29 315-343 27-55 (72)
286 3t72_q RNA polymerase sigma fa 29.2 85 0.0029 23.8 5.1 47 291-338 13-64 (99)
287 3tgn_A ADC operon repressor AD 28.8 69 0.0024 24.8 4.7 35 308-344 48-82 (146)
288 3bpv_A Transcriptional regulat 27.9 92 0.0031 23.7 5.3 34 310-344 41-74 (138)
289 1jgs_A Multiple antibiotic res 27.5 97 0.0033 23.6 5.4 34 310-344 46-79 (138)
290 2fbi_A Probable transcriptiona 27.4 87 0.003 23.9 5.1 34 310-344 48-81 (142)
291 3g3z_A NMB1585, transcriptiona 27.1 97 0.0033 24.0 5.3 34 310-344 43-76 (145)
292 3bj6_A Transcriptional regulat 26.9 83 0.0028 24.5 4.9 34 310-344 52-85 (152)
293 2pg4_A Uncharacterized protein 26.8 40 0.0014 24.7 2.7 32 312-344 30-62 (95)
294 3nrv_A Putative transcriptiona 26.6 93 0.0032 24.1 5.1 34 310-344 52-85 (148)
295 2kko_A Possible transcriptiona 26.5 47 0.0016 25.2 3.1 33 311-344 37-69 (108)
296 2a61_A Transcriptional regulat 25.7 1.1E+02 0.0037 23.5 5.3 34 310-344 45-78 (145)
297 3oop_A LIN2960 protein; protei 25.4 96 0.0033 23.9 5.0 33 311-344 50-82 (143)
298 3k0l_A Repressor protein; heli 25.4 98 0.0033 24.6 5.2 34 310-344 58-91 (162)
299 3t8r_A Staphylococcus aureus C 25.2 55 0.0019 26.4 3.5 32 312-344 28-59 (143)
300 1dce_A Protein (RAB geranylger 25.2 4.2E+02 0.014 26.1 10.8 66 155-227 124-191 (567)
301 2gxg_A 146AA long hypothetical 25.0 1.1E+02 0.0037 23.5 5.3 34 310-344 48-81 (146)
302 3bro_A Transcriptional regulat 25.0 1.2E+02 0.004 23.2 5.4 32 312-344 50-81 (141)
303 2hr3_A Probable transcriptiona 24.9 1.4E+02 0.0047 23.0 5.9 34 310-344 48-81 (147)
304 3b73_A PHIH1 repressor-like pr 24.9 1E+02 0.0035 24.0 4.8 43 301-344 16-60 (111)
305 1zu2_A Mitochondrial import re 24.8 32 0.0011 28.7 2.0 53 154-209 16-79 (158)
306 3q7a_A Farnesyltransferase alp 24.7 1.4E+02 0.0049 27.9 6.8 75 146-227 59-136 (349)
307 2pjp_A Selenocysteine-specific 24.7 98 0.0034 24.0 4.8 40 304-344 10-51 (121)
308 2p7v_B Sigma-70, RNA polymeras 24.6 88 0.003 21.2 4.1 28 311-339 24-51 (68)
309 2lnb_A Z-DNA-binding protein 1 24.6 1.7E+02 0.0058 21.6 5.6 44 300-344 22-65 (80)
310 1om2_A Protein (mitochondrial 24.2 96 0.0033 23.6 4.4 35 174-208 14-52 (95)
311 3hug_A RNA polymerase sigma fa 24.2 1.1E+02 0.0037 22.2 4.8 29 309-338 50-78 (92)
312 1ylf_A RRF2 family protein; st 24.0 66 0.0023 25.9 3.8 32 312-344 30-61 (149)
313 1s3j_A YUSO protein; structura 24.0 1.2E+02 0.0039 23.7 5.3 34 310-344 49-82 (155)
314 1lj9_A Transcriptional regulat 23.9 1E+02 0.0035 23.6 4.9 33 311-344 42-74 (144)
315 2eth_A Transcriptional regulat 23.9 1.2E+02 0.0041 23.8 5.4 33 311-344 57-89 (154)
316 3ech_A MEXR, multidrug resista 23.7 96 0.0033 23.9 4.7 33 311-344 50-82 (142)
317 1ku9_A Hypothetical protein MJ 23.4 60 0.0021 25.1 3.4 33 311-344 40-72 (152)
318 2fbh_A Transcriptional regulat 23.4 1E+02 0.0035 23.6 4.8 35 309-344 49-83 (146)
319 3e6m_A MARR family transcripti 23.4 1.1E+02 0.0038 24.3 5.1 34 310-344 65-98 (161)
320 2fa5_A Transcriptional regulat 23.3 1.2E+02 0.0041 23.9 5.3 34 310-344 61-94 (162)
321 2rdp_A Putative transcriptiona 23.3 1.3E+02 0.0043 23.3 5.3 34 310-344 54-87 (150)
322 2e9x_A DNA replication complex 23.3 3E+02 0.01 22.2 8.2 82 224-313 9-94 (149)
323 3dv8_A Transcriptional regulat 23.2 94 0.0032 25.7 4.8 33 311-344 168-200 (220)
324 4hbl_A Transcriptional regulat 22.9 97 0.0033 24.3 4.6 34 310-344 53-86 (149)
325 3eco_A MEPR; mutlidrug efflux 22.7 64 0.0022 24.8 3.4 32 312-344 47-78 (139)
326 2nyx_A Probable transcriptiona 22.4 1.1E+02 0.0038 24.6 4.9 34 310-344 57-90 (168)
327 3cdh_A Transcriptional regulat 22.2 1E+02 0.0035 24.1 4.6 34 310-344 55-88 (155)
328 3lwf_A LIN1550 protein, putati 22.1 74 0.0025 26.3 3.7 32 312-344 44-75 (159)
329 3f6o_A Probable transcriptiona 22.0 1.1E+02 0.0036 23.4 4.5 50 293-344 13-62 (118)
330 2wte_A CSA3; antiviral protein 22.0 1.3E+02 0.0045 26.6 5.7 35 309-344 163-197 (244)
331 3r0a_A Putative transcriptiona 21.9 1.3E+02 0.0044 23.3 5.0 31 313-344 43-73 (123)
332 3bja_A Transcriptional regulat 21.9 92 0.0031 23.7 4.2 34 310-344 45-78 (139)
333 3pqk_A Biofilm growth-associat 21.9 1.3E+02 0.0045 22.0 4.9 33 311-344 35-67 (102)
334 2k9m_A RNA polymerase sigma fa 21.9 66 0.0023 25.8 3.3 24 310-334 37-60 (130)
335 3bqo_A Telomeric repeat-bindin 21.8 2.4E+02 0.0083 24.5 7.0 92 121-223 90-207 (211)
336 2qww_A Transcriptional regulat 21.7 1.2E+02 0.0041 23.6 4.9 33 311-344 54-86 (154)
337 1sz9_A PCF11 protein; RNA poly 21.6 3.2E+02 0.011 22.0 8.7 66 3-69 8-74 (144)
338 1b89_A Protein (clathrin heavy 21.5 4.4E+02 0.015 25.6 9.7 82 109-206 155-236 (449)
339 3hsr_A HTH-type transcriptiona 21.3 71 0.0024 24.8 3.4 34 310-344 48-81 (140)
340 3c57_A Two component transcrip 21.3 82 0.0028 23.2 3.6 30 309-339 39-68 (95)
341 3s2w_A Transcriptional regulat 21.0 1.1E+02 0.0037 24.2 4.6 33 311-344 63-95 (159)
342 3by6_A Predicted transcription 20.9 1.2E+02 0.004 23.8 4.6 58 287-345 9-67 (126)
343 2pex_A Transcriptional regulat 20.7 1.2E+02 0.0041 23.6 4.7 34 310-344 59-92 (153)
344 3kp7_A Transcriptional regulat 20.4 1.2E+02 0.0042 23.6 4.7 35 309-344 48-82 (151)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-48 Score=386.30 Aligned_cols=285 Identities=16% Similarity=0.144 Sum_probs=199.8
Q ss_pred cCchhhHHHHHHHHHHhhhcccchhhhhhHHHHHH--HHHhcCChhhhhchhHHHHHHHHHHHHhHhh------------
Q 019008 49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA--RFITSCSAEQIRYVPEKFINVCKRYKDQVLL------------ 114 (347)
Q Consensus 49 ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~~~~~--~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~------------ 114 (347)
+-|+...+.+|.++..+++.+.. +++.+|...++ +.+.++|+|+++.+..+.+++...+.+.+..
T Consensus 130 ~~pE~~~y~~lL~~i~L~d~k~~-~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~ 208 (523)
T 4b4t_S 130 VTAEINCFMHLLVQLFLWDSKEL-EQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNI 208 (523)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence 34777878888888777776554 36677887777 7899999999998888866644333333222
Q ss_pred -hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC--CchhhHHHHHHHHHHHHhhh
Q 019008 115 -LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--LPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 115 -~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~--~~~~~l~Y~yy~G~i~~~~k 191 (347)
+++. -+..+|+|++|+|+.++ +++|++++|+|++.+.|++|.++++|..|+.. +++++++|+||.|+|++.++
T Consensus 209 ~ir~~--Ll~~~rta~lr~D~~~q--a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 209 ILRST--MMKFLKIASLKHDNETK--AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp HHHTH--HHHHHHHCCSCSSSCHH--HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHH--HHHHHHHHhcccCcchh--HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhc
Confidence 2322 36789999999999654 99999999999999999999999999988754 47788999999999999999
Q ss_pred cHHHHHHHHHHhhc-CCcc-chhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChH
Q 019008 192 RFRKALELLHNVVT-APMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIV 269 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~~-~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~ 269 (347)
+|.+|.++|++|++ +|.+ ...++.+.++|++|+|.||+ |++| +.+.++ ++.+++.+.||++|++||+.||+.
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLl-G~iP-~r~lf~----q~~l~~~L~pY~~Lv~Avr~GdL~ 358 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLM-GDIP-ELSFFH----QSNMQKSLLPYYHLTKAVKLGDLK 358 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHH-TCCC-CHHHHT----TTSCHHHHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhc-CCCC-ChHHhh----chhHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999998 8875 46799999999999999885 9999 755543 445566689999999999999999
Q ss_pred HHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 270 ELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 270 ~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.|++++++|++.|.+|||++||+|++++++|++|++++++|+|||++|||.+++++|++|||++|++||+||++-
T Consensus 359 ~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~ 433 (523)
T 4b4t_S 359 KFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIE 433 (523)
T ss_dssp HHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=200.56 Aligned_cols=161 Identities=13% Similarity=0.154 Sum_probs=143.7
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh
Q 019008 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 251 (347)
Q Consensus 173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~ 251 (347)
.++.++|.||.|++++.+++|++|.+.|+.|++ +|. +..+....+.|.+|.|+|+ +|++| +.+- .+.|+
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~-~~~~~k~~IL~yLIp~~Ll-~G~iP-~~~l------l~~~~- 79 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR-SSQKNKRMILIYLLPVKML-LGHMP-TVEL------LKKYH- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHH-TTCEE-CHHH------HHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH-hHHHHHHHHHHHHHHHHHH-cCCCC-CHHH------hhhCc-
Confidence 678999999999999999999999999999998 786 4577888889999999987 59988 5422 23343
Q ss_pred cchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHh--hhhcccHHHHHHHcCCC----
Q 019008 252 FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQ--TYLTLSLQDIANTVQLN---- 325 (347)
Q Consensus 252 ~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~--~Ys~IsL~dIa~~l~l~---- 325 (347)
..||.+|++|+++||+..|++++++|++.|.+||++-++.+++..+.|..+|++.. .|++||+++|+.+++++
T Consensus 80 -~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~ 158 (203)
T 3t5x_A 80 -LMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED 158 (203)
T ss_dssp -CGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred -hhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 35899999999999999999999999999999999999999999999999999987 59999999999999764
Q ss_pred -ChhhHHHHHHHHhhccccc
Q 019008 326 -SSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 326 -s~~eaE~~v~~mI~~G~~~ 344 (347)
|.+|+|.+|++||.+|.+-
T Consensus 159 ~~~~evE~ila~lI~~G~Ik 178 (203)
T 3t5x_A 159 VDIDEVQCILANLIYMGHVK 178 (203)
T ss_dssp CCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHcCceE
Confidence 7899999999999999863
No 3
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.1e-23 Score=204.57 Aligned_cols=196 Identities=14% Similarity=0.204 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcc----ccc-ccC--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc--CCccc--
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLED----DIY-EIN--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSS-- 210 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~----~i~-~i~--~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~--~P~~~-- 210 (347)
+-+.+++.|.+-+..+.+..++.. ... +.+ +.++..+|+||+|++++.+.+|.+|.+.|..|+. +|..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~ 257 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTN 257 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccc
Confidence 447788999999999999988864 111 111 2679999999999999999999999999999996 58754
Q ss_pred --hhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchh-HHHHHHHHhcCChHHHHHHHHhcccccccccc
Q 019008 211 --INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP-YMELVNTYNTGKIVELETYVQTNREKFESDNN 287 (347)
Q Consensus 211 --~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~p-Y~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n 287 (347)
..+....+.|.+|.|+|| +|++| +. ...++.+.....| |.+|++|++.||+..|++++++|++.|.+||+
T Consensus 258 ~~~~~n~~~ILkyLIpv~LL-lG~~P-~~-----~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi 330 (455)
T 3t5v_B 258 QAITRNGTRILNYMIPTGLI-LGKMV-KW-----GPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL 330 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCB-CH-----HHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHH-cCCCC-CH-----HHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence 467888899999999988 59998 42 2334433234566 99999999999999999999999999999999
Q ss_pred -ccHHHHHHHHHHHHHHHHH----Hhhh--hcccHHHHHHHcCC--------------------CChhhHHHHHHHHhhc
Q 019008 288 -LGLVKQVVSSMYKRNIQRL----TQTY--LTLSLQDIANTVQL--------------------NSSKEAEMHVLQMVTF 340 (347)
Q Consensus 288 -~gLV~~~~~~~~r~~I~~L----~~~Y--s~IsL~dIa~~l~l--------------------~s~~eaE~~v~~mI~~ 340 (347)
+.|+.+++..+.|..+|++ ..+| ++||+++|+.++++ .+.+|+|.+|+++|.+
T Consensus 331 ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~ 410 (455)
T 3t5v_B 331 LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINL 410 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 9999999999999999998 7778 89999999999985 3688999999999999
Q ss_pred cccc
Q 019008 341 EVNL 344 (347)
Q Consensus 341 G~~~ 344 (347)
|.+-
T Consensus 411 G~Ik 414 (455)
T 3t5v_B 411 GLLR 414 (455)
T ss_dssp TSCC
T ss_pred CCeE
Confidence 9763
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.79 E-value=1.5e-17 Score=163.57 Aligned_cols=219 Identities=13% Similarity=0.158 Sum_probs=178.9
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---cc-CCchhhHHHHHHHHHHHH-hhhcHHH
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EI-NLPRDFFLYCYYGGMIFI-GQKRFRK 195 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i-~~~~~~l~Y~yy~G~i~~-~~k~y~~ 195 (347)
.+..++.-+.+.|. +..+..+|.+-.+.|...+++..+...+.+.-. .+ ++|.-...+..++|++++ ..++|++
T Consensus 121 ~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~ 199 (394)
T 3txn_A 121 LGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKT 199 (394)
T ss_dssp HHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHH
Confidence 35556666666664 678899999999999999999999888876422 22 457888999999999999 8999999
Q ss_pred HHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccC-HHHhhhhhhcchhHHHHHHHHhcCChHHHHHH
Q 019008 196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTS-SAAQRNLKNFSQPYMELVNTYNTGKIVELETY 274 (347)
Q Consensus 196 A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s-~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~ 274 (347)
|...|-.+........+....++.|..+|+.++. +..+ .+....+ +...+.-.+...+|.+|+.||..||..+|.++
T Consensus 200 A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~-el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~i 277 (394)
T 3txn_A 200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSD-DVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAA 277 (394)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGG-GHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CCHH-HHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHH
Confidence 9988888886555567778888998888888775 5555 5432211 11122111234689999999999999999999
Q ss_pred HHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 275 VQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 275 ~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
+++++..|..|..+ .-+..+.++++.++++++.++|++|++++||+.+++ +++++|..|.+||.||.+
T Consensus 278 L~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l-s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 278 LKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 99999999999996 458999999999999999999999999999999999 599999999999999975
No 5
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.7e-16 Score=154.73 Aligned_cols=202 Identities=10% Similarity=0.108 Sum_probs=167.8
Q ss_pred CCchhhHHHHHHHHHHhcCCchhhhhhhccc---ccccC-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCccch
Q 019008 136 TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD---IYEIN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSI 211 (347)
Q Consensus 136 ~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~---i~~i~-~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~~~~ 211 (347)
......++..-+|+|+..++|..|..++.+. .+..+ ++.-.+.|+.|+|++++..++|.+|..+|..+...|....
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 3557889999999999999999999888873 33333 3566799999999999999999999999999998887544
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh----cchhHHHHHHHHhcCChHHHHHHHHhcccccccccc
Q 019008 212 NAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN----FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNN 287 (347)
Q Consensus 212 s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~----~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n 287 (347)
..-...+.++.+++++++.+..| +. +....+.++. ...+|.+|+.+|..+++..|..+.+.+...+..|..
T Consensus 253 d~~~~~~~L~~~v~~~iLa~~~~-~~----~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 253 DEAKWKPVLSHIVYFLVLSPYGN-LQ----NDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSS-TT----HHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCc-hH----HHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 55555666778888888866555 43 3345554442 346899999999999999999999999888777765
Q ss_pred c-------cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 288 L-------GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 288 ~-------gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
. ..+..+..+++.++|+++++.|++|++++||+.++++ ++++|..+.+||.+|.+
T Consensus 328 ~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i 389 (445)
T 4b4t_P 328 AFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGII 389 (445)
T ss_dssp SCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSS
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCE
Confidence 3 4688999999999999999999999999999999997 89999999999999986
No 6
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.6e-13 Score=128.96 Aligned_cols=229 Identities=9% Similarity=0.144 Sum_probs=172.5
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCC--CCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---ccC-CchhhHHHHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EIN-LPRDFFLYCYY 182 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~--~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~-~~~~~l~Y~yy 182 (347)
+......++...++..+..+...... +.......+....++|...++|+.|...+++... .++ ++.....++.+
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 221 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM 221 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 33334455555677777776655432 2345677899999999999999999999987543 222 24567899999
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhcCCc----cchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhh---hh--hhcc
Q 019008 183 GGMIFIGQKRFRKALELLHNVVTAPM----SSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQR---NL--KNFS 253 (347)
Q Consensus 183 ~G~i~~~~k~y~~A~~~l~~ai~~P~----~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r---~~--k~~~ 253 (347)
+|.++...++|++|..+|..++..+. .........+.+..++...+.. ... .. ......+ .+ ....
T Consensus 222 ~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~ 296 (434)
T 4b4t_Q 222 SGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLN-LID-DV---KNILNAKYTKETYQSRGI 296 (434)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-CHH-HH---HHHHHCSSSSTTCCCHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcc-chh-HH---HhHHHHHHHHHHhcchhh
Confidence 99999999999999999999986432 1233455666666666655432 111 10 0011000 01 1123
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHH
Q 019008 254 QPYMELVNTYNTGKIVELETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEM 332 (347)
Q Consensus 254 ~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~ 332 (347)
.+|.+++.+|..+++..+...++.+...+..|... ..+..+...++.++++++.+.|++|++++||+.++++ ++++|.
T Consensus 297 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~ 375 (434)
T 4b4t_Q 297 DAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEG 375 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHH
Confidence 57889999999999999999999999999999985 7899999999999999999999999999999999997 899999
Q ss_pred HHHHHhhcccc
Q 019008 333 HVLQMVTFEVN 343 (347)
Q Consensus 333 ~v~~mI~~G~~ 343 (347)
.+.+||.+|.+
T Consensus 376 ~l~~lI~~~~i 386 (434)
T 4b4t_Q 376 KLSQMILDKIF 386 (434)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHhCCCc
Confidence 99999999875
No 7
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-11 Score=123.15 Aligned_cols=226 Identities=12% Similarity=0.002 Sum_probs=166.8
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchhhHHHHHHHHHHHHhhh
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
.|.-..|+..+.. ++....++.+.-.+....+|+|+..++|..+...+.+.-. ..+.+....+|..|+|++++..+
T Consensus 144 ~Gd~~~A~~~~~~-~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r 222 (429)
T 4b4t_R 144 IGDKDNAEKTLGK-SLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR 222 (429)
T ss_dssp HCCCTTHHHHHHH-HHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred cCCHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 4444456666655 3444556677778888999999999999999999988422 22335566799999999999999
Q ss_pred cHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCCC-cccCHHHhhhhh--hcchhHHHHHHHHhcCCh
Q 019008 192 RFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLP-KYTSSAAQRNLK--NFSQPYMELVNTYNTGKI 268 (347)
Q Consensus 192 ~y~~A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp-~~~s~~~~r~~k--~~~~pY~~la~a~~~g~~ 268 (347)
+|.+|...|..+...|...-..-.....++.+|++++...... -.. -..++....... +...++.+++.+|-.++.
T Consensus 223 ~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~-l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~ 301 (429)
T 4b4t_R 223 NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTD-LKSKVIDSPELLSLISTTAALQSISSLTISLYASDY 301 (429)
T ss_dssp CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHH-HHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHH-HHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccH
Confidence 9999998888888777644344445567788888877532210 000 012333333322 233567788888877777
Q ss_pred HHH-HHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 269 VEL-ETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 269 ~~~-~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
..+ +...+.+...+..|... .=+..+.++++.+.+..+.+.|++|+++.+|+.+|++ .+++|..+.+||.+|.+
T Consensus 302 ~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l 377 (429)
T 4b4t_R 302 ASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQL 377 (429)
T ss_dssp HHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCe
Confidence 765 44566677777777664 5588899999999999999999999999999999997 89999999999999976
No 8
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.26 E-value=1.8e-11 Score=111.96 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=141.7
Q ss_pred HHHHHhcCCchhhhhhhcc--------cccccCC-c--hhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc--chh
Q 019008 147 LQLCLLAKCYKAGLSVLED--------DIYEINL-P--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS--SIN 212 (347)
Q Consensus 147 l~l~l~~~~y~~Al~~l~~--------~i~~i~~-~--~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~--~~s 212 (347)
++..+..++|+.+.+++.+ +++.... + ..+.++.|+.|.+.+.+.++.++++-+.+.+. .|.. ..|
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s 93 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPS 93 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCC
Confidence 4566788999999999886 2332111 2 24689999999999999999999877777665 6664 335
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhh-hhh--cchhHHHHHHHHhcCChHHHHHHHHhcccccccccccc
Q 019008 213 AIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRN-LKN--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLG 289 (347)
Q Consensus 213 ~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~-~k~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~g 289 (347)
+.+.+..+..+|. +|.+|+++ ++-........+. +++ ..+++.++.+++..||..+|-+..++... +...-
T Consensus 94 ~~~~e~~~~~LL~-lL~~~~~~-ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~----~~~~~ 167 (229)
T 4b0z_A 94 SRMGLVTGLNLLY-LLSENRIA-EFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNF----PEFSY 167 (229)
T ss_dssp TTHHHHHHHHHHH-HHHTTCHH-HHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----GGGHH
T ss_pred ccHHHHHHHHHHH-HHHcCCch-HHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc----chHHH
Confidence 5666655555555 56789988 6422111100010 111 23567889999999999999988876532 22345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH---Hhhccccc
Q 019008 290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ---MVTFEVNL 344 (347)
Q Consensus 290 LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~---mI~~G~~~ 344 (347)
++..++..++...++.+.++|.+||++++++.++++|++|++.++.+ .|+||.+.
T Consensus 168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~ 225 (229)
T 4b0z_A 168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEe
Confidence 88999999999999999999999999999999999999999999999 79999754
No 9
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.2e-09 Score=107.32 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCchhhhhhhccccccc---C--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc--CCccchhHHHH
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDDIYEI---N--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSSINAIAV 216 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i---~--~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~--~P~~~~s~i~v 216 (347)
....+.++..+..+.|..++++.--.+ + .+.....||+.+|..+...++|.++...+-..+. .+....+.-..
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~ 210 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAER 210 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHH
Confidence 456789999999999999998753211 1 2567899999999999999999999977777774 33445666667
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccc-CHHHhhhhhh--cchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHH
Q 019008 217 EAYKKYILVSLIHHGQFSSTLPKYT-SSAAQRNLKN--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293 (347)
Q Consensus 217 ea~Kk~iLv~LL~~G~i~~~lp~~~-s~~~~r~~k~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~ 293 (347)
.+.+..++++.|+...++ ++.... .|.+ +.+++ ...+|.+|..+|..||+.+|.+.++.+.+.+..-+.. ...
T Consensus 211 ~~~a~~l~~~all~~~i~-~f~eLL~~p~i-~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~--~~~ 286 (393)
T 4b4t_O 211 QQLAYDLSISALLGDKIY-NFGELLHHPIM-ETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH--ESF 286 (393)
T ss_dssp HHHHHHHHHHHHHCCSSC-STHHHHHSCCT-TSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH--HHH
T ss_pred HHHHHHHHHHHHcCCCCC-ChHHHhCChHH-HHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh--HHH
Confidence 777888888888876776 653211 1111 11222 2357999999999999999998877665443211110 111
Q ss_pred HHHHHHHHHHHHHH--hhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 294 VVSSMYKRNIQRLT--QTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 294 ~~~~~~r~~I~~L~--~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
+++.++-..+..+. +.|.+||+++|++.++++ ++|+|.+|.+||.+|.+
T Consensus 287 l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI 337 (393)
T 4b4t_O 287 LRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLL 337 (393)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCE
Confidence 22222222333333 457899999999999996 89999999999999975
No 10
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.18 E-value=1.7e-06 Score=66.54 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 295 ~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
...++.++|+.+++.|++|+++.+|+.++++ ++++|.++.+||.+|.+
T Consensus 13 ~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l 60 (84)
T 1ufm_A 13 DRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRM 60 (84)
T ss_dssp CHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcE
Confidence 3567888899999999999999999999998 99999999999999986
No 11
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.34 E-value=0.0023 Score=49.86 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=73.3
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++.. +|+.......+..+...+...+.|+.|...+++-+-..|........+|..|.++..+++|
T Consensus 14 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH
Confidence 456666788888887766 4443323356677889999999999999999986654443434467788899999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|.+
T Consensus 93 ~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 93 TEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 999999999997 7864
No 12
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.21 E-value=0.00074 Score=58.46 Aligned_cols=81 Identities=10% Similarity=0.192 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHH
Q 019008 254 QPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMH 333 (347)
Q Consensus 254 ~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~ 333 (347)
.+|.++..+|..|++..+++..+ ++-+|...+.+.++.-.+..|...-..||.++|++.+++++.+|+|.+
T Consensus 60 ~~~~~LL~iF~~G~~~~y~~~~~---------~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~l 130 (169)
T 3chm_A 60 SVYLDLLRLFAHGTWGDYKCNAT---------RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF 130 (169)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHGG---------GSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHhHH---------hCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHH
Confidence 57999999999999999987432 223566777777777778888777899999999999999999999999
Q ss_pred HH-HHhhcccc
Q 019008 334 VL-QMVTFEVN 343 (347)
Q Consensus 334 v~-~mI~~G~~ 343 (347)
|. ++|..|.+
T Consensus 131 vI~~ai~~gLI 141 (169)
T 3chm_A 131 LINECMYAGIV 141 (169)
T ss_dssp HHHTHHHHTSE
T ss_pred HHHHHHHhCCe
Confidence 99 99998865
No 13
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.04 E-value=0.01 Score=52.55 Aligned_cols=95 Identities=16% Similarity=0.042 Sum_probs=76.4
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~---- 189 (347)
..++...++..+..++.. +|........+-.+...+...+.|+.|...+++-+-..|.+.....-+|..|.++..
T Consensus 27 ~~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp HTTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred HhCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 456666788888887766 454444456778888999999999999999998766545455566778899999999
Q ss_pred ----hhcHHHHHHHHHHhhc-CCcc
Q 019008 190 ----QKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 190 ----~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+++|++|...|+.++. .|.+
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccchhHHHHHHHHHHHHHHCcCc
Confidence 9999999999999997 8875
No 14
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.88 E-value=0.015 Score=48.51 Aligned_cols=128 Identities=7% Similarity=-0.045 Sum_probs=90.1
Q ss_pred hhhhHHHHHHHHHhcCC--hhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHH
Q 019008 74 RANTLVPIIARFITSCS--AEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCL 151 (347)
Q Consensus 74 ~~~~~~~~~~~fl~~~~--~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l 151 (347)
+.+.+-..+.+|+.... .+-+..-|+....+.. .+..+...+....|+..++.|+.. +|.. ...|..+-..+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~-~P~~---~~~~~~lg~~~~ 81 (151)
T 3gyz_A 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYS-YAYDFYNKGRIEEAEVFFRFLCIY-DFYN---VDYIMGLAAIYQ 81 (151)
T ss_dssp --CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Confidence 45566777888886544 2222344544333332 333445667777889999888765 6643 446778889999
Q ss_pred hcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 152 LAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 152 ~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+.|+.|+..+++.+---| +....+|..|.++..+++|++|..+|+.++. .|..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P---~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGK---NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSS---SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999998764222 2245678899999999999999999999998 7764
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.64 E-value=0.02 Score=46.97 Aligned_cols=92 Identities=3% Similarity=-0.172 Sum_probs=70.7
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
.+...+....++..++.++.. +|.. ...+..+-..+...+.|+.|+..+++.+---| +....+|+.|.++..+
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVL-DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI---XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHHc-Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Confidence 334556666788888887755 6643 44667788899999999999999998654212 2345678889999999
Q ss_pred hcHHHHHHHHHHhhc-CCcc
Q 019008 191 KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|..+|+.++. .|.+
T Consensus 103 g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANX 122 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 999999999999997 7764
No 16
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.61 E-value=0.018 Score=46.34 Aligned_cols=91 Identities=4% Similarity=-0.182 Sum_probs=70.1
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
+...++...++..++.++.. +|.. ...+..+-..+...+.|+.|...+++.+---| +....+|..|.++..++
T Consensus 28 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCML-DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDI---NEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTT
T ss_pred HHHHccHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHcC
Confidence 34556666788888887764 6643 34667788899999999999999998764222 22456788899999999
Q ss_pred cHHHHHHHHHHhhc-CCcc
Q 019008 192 RFRKALELLHNVVT-APMS 209 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~~ 209 (347)
+|++|..+|+.++. .|..
T Consensus 101 ~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 101 DLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 99999999999997 7754
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.52 E-value=0.017 Score=46.03 Aligned_cols=91 Identities=9% Similarity=0.081 Sum_probs=72.6
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
....++...|+..+..|+.. +|.. ...|..+-..+...+.|+.|+..+++.+- ++ .+....++..|.++..++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~--p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKR-DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIR-LD--SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hh--hhhhHHHHHHHHHHHHCC
Confidence 33456666788888888755 6643 45778888999999999999999998764 22 234567888999999999
Q ss_pred cHHHHHHHHHHhhc-CCcc
Q 019008 192 RFRKALELLHNVVT-APMS 209 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~~ 209 (347)
+|++|.++|+.++. -|.+
T Consensus 96 ~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 99999999999997 8875
No 18
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.47 E-value=0.046 Score=49.71 Aligned_cols=174 Identities=9% Similarity=-0.027 Sum_probs=110.8
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhc-CCchhhhhhhcccccccC---CchhhHHHHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEIN---LPRDFFLYCYY 182 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy 182 (347)
+......+.+..++..+..|+.-....+. .....+..+-..+... +.|+.|+..+.+.+--.+ ........+.-
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 33344566777889999998877654332 1234566777888886 999999999998654222 12223455667
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhc-CCccchhH-HHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hc
Q 019008 183 GGMIFIGQKRFRKALELLHNVVT-APMSSINA-IAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NF 252 (347)
Q Consensus 183 ~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~-i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k--------~~ 252 (347)
.|.++..+++|++|.++|+.++. .|...... ...+++-...++. +..|+.. .- -....+..+ ..
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~-~A----~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAV-AA----ARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHH-HH----HHHHHGGGCC---------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH-HHcCCHH-HH----HHHHHHHHhhCCCCCCcHH
Confidence 79999999999999999999997 66543211 1223444444443 3345543 10 001111110 01
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHhccccccccccc
Q 019008 253 SQPYMELVNTYNTGKIVELETYVQTNREKFESDNNL 288 (347)
Q Consensus 253 ~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~ 288 (347)
..-+..+..++..||.+++.+.++.+...-.-|...
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 123566888999999999999999998887777665
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.43 E-value=0.059 Score=44.07 Aligned_cols=92 Identities=5% Similarity=-0.089 Sum_probs=72.6
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..++.|+.. +|.. ...+..+...+...+.|+.|+..+++.+---| +....++..|.++..+++
T Consensus 22 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 22 MARKEYSKAIDLYTQALSI-APAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP---KYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHh-CCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccC
Confidence 3456666788888887765 5543 45778889999999999999999998754222 246778889999999999
Q ss_pred HHHHHHHHHHhhc-CCccch
Q 019008 193 FRKALELLHNVVT-APMSSI 211 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~~~ 211 (347)
|++|..+|+.++. .|.+..
T Consensus 95 ~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 95 YKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHhCCCchH
Confidence 9999999999997 887543
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.32 E-value=0.44 Score=40.87 Aligned_cols=208 Identities=8% Similarity=-0.018 Sum_probs=117.9
Q ss_pred hcCchhhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHH
Q 019008 48 QLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLT 127 (347)
Q Consensus 48 ~ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~ 127 (347)
..||....-.+..+-......... +.+...+..+... +|.. +..+..++. .....++...++..+..
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~----~~~~----~~~~~~la~----~~~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNT-EQAKVPLRKALEI----DPSS----ADAHAALAV----VFQTEMEPKLADEEYRK 96 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCT-GGGHHHHHHHHHH----CTTC----HHHHHHHHH----HHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhc----CCCh----HHHHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 457765444444433333332222 2444455554433 2222 223333333 33345667778888888
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-C
Q 019008 128 AIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (347)
Q Consensus 128 Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~ 206 (347)
++.. +|.. ...+..+...+...+.++.|...+++.+- .+........++..|.++..+++|++|..+|+.++. .
T Consensus 97 a~~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 97 ALAS-DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHH-CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8765 4432 45677888999999999999999998765 222334566777889999999999999999999997 7
Q ss_pred CccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHHHHH-hcCChHHHHHHHHhccccc
Q 019008 207 PMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNTY-NTGKIVELETYVQTNREKF 282 (347)
Q Consensus 207 P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la~a~-~~g~~~~~~~~~~~~~~~f 282 (347)
|... +++..+..+. ...|+.. . .-....+..+ .....|..++..+ ..|+.++-.+.+++..+.+
T Consensus 172 ~~~~------~~~~~la~~~-~~~g~~~-~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 RNQP------SVALEMADLL-YKEREYV-P----ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp SCCH------HHHHHHHHHH-HHTTCHH-H----HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccH------HHHHHHHHHH-HHcCCHH-H----HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7541 1222222221 2234433 1 0111111111 1223455666655 4677777766666655554
Q ss_pred ccc
Q 019008 283 ESD 285 (347)
Q Consensus 283 ~~D 285 (347)
..+
T Consensus 240 p~~ 242 (252)
T 2ho1_A 240 PGS 242 (252)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 21
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.27 E-value=0.025 Score=43.14 Aligned_cols=90 Identities=9% Similarity=-0.002 Sum_probs=69.0
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHHHHh
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i~~~ 189 (347)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|...+.+.+-..+. .......++..|.++..
T Consensus 16 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKEL-DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 456666788888888766 4432 456778889999999999999999886542221 11226778889999999
Q ss_pred hhcHHHHHHHHHHhhc-CC
Q 019008 190 QKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P 207 (347)
+++|++|..+|+.++. .|
T Consensus 92 ~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999998 55
No 22
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.24 E-value=0.02 Score=45.23 Aligned_cols=89 Identities=9% Similarity=-0.083 Sum_probs=68.5
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++...++..++.|+.. +|+. ...+..+-..+...+.++.|+..+++.+---| +....++..|.++..+++
T Consensus 28 ~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQK-EPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Confidence 3456667788888888775 5543 45677888999999999999999988654212 235577899999999999
Q ss_pred HHHHHHHHHHhhc-CCc
Q 019008 193 FRKALELLHNVVT-APM 208 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~ 208 (347)
|++|..+|+.++. .|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 9999999999997 665
No 23
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.21 E-value=0.016 Score=46.16 Aligned_cols=96 Identities=11% Similarity=0.000 Sum_probs=72.1
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGG 184 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G 184 (347)
+......++...|+.....|+. ++|+. ...+..+-..+...+.|+.|+..+++.+---| .......-++-.|
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~-~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIE-LDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3333455666678888888875 46653 45678889999999999999999988653111 1233455677889
Q ss_pred HHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 185 MIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 185 ~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.++..+++|++|.++|+.++. .|.
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999999999997 554
No 24
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.037 Score=43.01 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=69.2
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..+..|+.. +|+. ...+..+...+...+.|+.|+..+++.+---| +....++..|.++..+++
T Consensus 15 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 15 FTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHhC
Confidence 3456666788888888765 5543 45778889999999999999999998764222 235678889999999999
Q ss_pred HHHHHHHHHHhhc-C
Q 019008 193 FRKALELLHNVVT-A 206 (347)
Q Consensus 193 y~~A~~~l~~ai~-~ 206 (347)
|++|..+|+.++. .
T Consensus 88 ~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 88 YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 9999999999997 6
No 25
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.08 E-value=0.017 Score=47.39 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+|..+...++..+.|+.|+...++.+-- + .+....+|..|.++..+++|++|..+|+.++. .|.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-E--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 567888899999999999999999887642 2 13456788899999999999999999999998 8875
No 26
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.07 E-value=0.036 Score=43.48 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=70.8
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++...++..+..++.. +|+.......+..+...+...+.|+.|...+++.+-.-| +....++..|.++..+++
T Consensus 39 ~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~ 114 (148)
T 2dba_A 39 FKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---GDVKALYRRSQALEKLGR 114 (148)
T ss_dssp HTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---cCHHHHHHHHHHHHHcCC
Confidence 3455666678888777654 554323456777888999999999999999988654322 236677889999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 115 ~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 115 LDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 9999999999997 7764
No 27
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.07 E-value=0.0093 Score=46.37 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHhh--CCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 116 EAPIRGVGPMLTAIRKI--QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 116 ~~~~~~i~~L~~Ai~r~--~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
+....++..++.|+..- +| .-...+..+-..+...+.|+.|+..+++.+-.-| +....++.-|.++..+++|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGK---DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCH
T ss_pred CcHHHHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCH
Confidence 34556788888877642 23 2356778888999999999999999998764323 2256777889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|..
T Consensus 78 ~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 999999999997 6764
No 28
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.06 E-value=0.068 Score=39.73 Aligned_cols=89 Identities=9% Similarity=-0.095 Sum_probs=68.8
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++.. +|.. ...+..+...+...+.|+.|...+.+.+-.-| +....++..|.++..+++|
T Consensus 16 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIKL-DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HcccHHHHHHHHHHHHHH-CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhH
Confidence 456666678888887765 4432 44667788899999999999999988654322 2356678889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|..
T Consensus 89 ~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 999999999997 6764
No 29
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.00 E-value=0.3 Score=43.79 Aligned_cols=97 Identities=4% Similarity=-0.056 Sum_probs=74.5
Q ss_pred HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~ 189 (347)
......++...++..+..++...+.++......+..+...+...+.|+.|...+++.+-.-| +....++..|.++..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---DNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHH
Confidence 33455677777899998888765443333334566788999999999999999998654322 235678888999999
Q ss_pred hhcHHHHHHHHHHhhc-CCcc
Q 019008 190 QKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+++|++|.++|+.++. .|.+
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999997 7864
No 30
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.99 E-value=0.41 Score=42.08 Aligned_cols=112 Identities=11% Similarity=-0.041 Sum_probs=79.7
Q ss_pred HhhhcccccchHHHHHHHHhhCCC-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~ 187 (347)
....+....++..++.|+.. +|. +.....++..+...+...+.|+.|...+++.+-- .+.+......++..|.++
T Consensus 15 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34556677788888888886 443 2333567788889999999999999998875432 122445577788899999
Q ss_pred HhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHH
Q 019008 188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iL 224 (347)
..+++|++|.++|+.++. .|...-......++..+-.
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 131 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 999999999999999997 5553333333444443333
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.94 E-value=0.18 Score=43.85 Aligned_cols=150 Identities=10% Similarity=0.015 Sum_probs=90.6
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-chhhHHHHHHHHHHHHhhh
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-~~~~l~Y~yy~G~i~~~~k 191 (347)
...++...++..++.++.. +|... ..+..+...+...+.|+.|+..+++.+- .+. +.....-++..|.++..++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~-~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAK-KYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHT-TCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHh-CCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc
Confidence 3455566678888887755 44322 2456677788899999999998888665 332 3333566788899999999
Q ss_pred cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHH-HHHhcC
Q 019008 192 RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELV-NTYNTG 266 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la-~a~~~g 266 (347)
+|++|..+|+.++. .|.... ++..+-.+. ...|+.. . .-....+..+ .....|..++ ..+..+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~------~~~~l~~~~-~~~~~~~-~----A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLD------MYGQIGSYF-YNKGNFP-L----AIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTH------HHHHHHHHH-HHTTCHH-H----HHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcCcccHH------HHHHHHHHH-HHccCHH-H----HHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999997 676431 222222222 2334433 1 0011111111 1235677888 777777
Q ss_pred ChHHHHHHHHhcc
Q 019008 267 KIVELETYVQTNR 279 (347)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (347)
+.++-.+.+++.-
T Consensus 157 ~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 157 EYVKADSSFVKVL 169 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555554444433
No 32
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.82 E-value=0.14 Score=40.00 Aligned_cols=95 Identities=6% Similarity=-0.047 Sum_probs=71.0
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHH
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM 185 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~ 185 (347)
.....+....++..+..|+......+ ......+..+...+...+.|+.|...+.+.+-.. ..+......++..|.
T Consensus 58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 137 (164)
T 3ro3_A 58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 137 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence 33455666678888888877654322 2234566778899999999999999998865322 223455677888999
Q ss_pred HHHhhhcHHHHHHHHHHhhc
Q 019008 186 IFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 186 i~~~~k~y~~A~~~l~~ai~ 205 (347)
++..+++|++|.++|+.++.
T Consensus 138 ~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 138 AYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999986
No 33
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.77 E-value=0.2 Score=41.41 Aligned_cols=127 Identities=7% Similarity=-0.116 Sum_probs=85.6
Q ss_pred hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCC-C--chhhHHHHHHHHH
Q 019008 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSST-E--HLTTLHPEFLQLC 150 (347)
Q Consensus 74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-~--~lT~~H~~ll~l~ 150 (347)
++...+.+........+... ..+..+.. ++......+....++..+..|+......+ . .....+..+...+
T Consensus 44 ~A~~~~~~al~~~~~~~~~~--~~~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHT--AEHRALHQ----VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHH--HHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcH--HHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 55566677766665443211 11122222 33333456667778888888887755333 2 3566678888999
Q ss_pred HhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008 151 LLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (347)
Q Consensus 151 l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~ 206 (347)
...+.|+.|...+++.+-.. +.+......++..|.++..+++|++|.++|+.++..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999998865321 223344555788899999999999999999999973
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.77 E-value=0.12 Score=47.34 Aligned_cols=155 Identities=10% Similarity=0.031 Sum_probs=95.6
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMI 186 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i 186 (347)
....+.+..++..++.|+.-+...+. .....+..+-..+.. +.|+.|+..+.+.+--.+ ........++-.|.+
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 164 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 34556777899999999887654432 223455666677777 999999999988653222 123345667788999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh-----h--hcchhHHH
Q 019008 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL-----K--NFSQPYME 258 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~-----k--~~~~pY~~ 258 (347)
+..+++|++|..+|+.++. .|..........++-...++.+ ..|+.. .- -....+.. . ....-...
T Consensus 165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~-~A----~~~~~~al~~p~~~~~~e~~~l~~ 238 (307)
T 2ifu_A 165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYV-AA----QKCVRESYSIPGFSGSEDCAALED 238 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHH-HH----HHHHHHHTTSTTSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHH-HH----HHHHHHHhCCCCCCCCHHHHHHHH
Confidence 9999999999999999997 5654322222333434434332 234432 10 00011100 0 01123556
Q ss_pred HHHHHhcCChHHHHH
Q 019008 259 LVNTYNTGKIVELET 273 (347)
Q Consensus 259 la~a~~~g~~~~~~~ 273 (347)
++.++..||.+.+..
T Consensus 239 l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 239 LLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCHHHHHH
Confidence 778888899888887
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.75 E-value=0.54 Score=43.06 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=74.7
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFI 188 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~~ 188 (347)
+...+....++..+..++.....++..+..++..+...+...+.|+.|...+++.+-- ..........++..|.++.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3455667778888888887633333334567788889999999999999998875432 1224456778889999999
Q ss_pred hhhcHHHHHHHHHHhhc-CCcc
Q 019008 189 GQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 189 ~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+++|++|..+|+.++. .|..
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999997 6653
No 36
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.75 E-value=0.077 Score=44.80 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=70.4
Q ss_pred hhcccccchHHHHHHHHhhCCCCC-ch-----------hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTE-HL-----------TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~-~l-----------T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~y 181 (347)
..+....|+..+..|+.....++. .. ...+..+...+...+.|+.|+..+++.+-.-| +....+|
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~ 126 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK---NNVKALY 126 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---ccHHHHH
Confidence 445566677888887765443221 01 25677888999999999999999998654322 3456788
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 182 YGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..|.++..+++|++|..+|+.++. .|..
T Consensus 127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999997 7865
No 37
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.75 E-value=0.033 Score=42.70 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=63.0
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l 200 (347)
++..++.++.. +|.. ...+..+...+...+.|+.|...+.+.+-.-| +....++.-|.++..+++|++|..+|
T Consensus 4 a~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQ-GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTT-TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556665543 5543 45678888999999999999999998664222 33556788899999999999999999
Q ss_pred HHhhc-CCcc
Q 019008 201 HNVVT-APMS 209 (347)
Q Consensus 201 ~~ai~-~P~~ 209 (347)
+.++. .|..
T Consensus 77 ~~al~~~~~~ 86 (115)
T 2kat_A 77 ESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcccc
Confidence 99997 6653
No 38
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.74 E-value=0.083 Score=39.92 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=68.7
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-| +....++..|.++..+++|
T Consensus 24 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIEL-NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cCHHHHHHHHHHHHHhCCH
Confidence 455566678888887765 4432 44667888999999999999999988654322 2255678889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|..
T Consensus 97 ~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 999999999997 7764
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.73 E-value=0.065 Score=41.72 Aligned_cols=88 Identities=9% Similarity=-0.020 Sum_probs=69.3
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..+..++.. +|+. ...+..+...+...+.|+.|...+.+.+---| +....++..|.++..+++|
T Consensus 21 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 21 VGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HhCcHHHHHHHHHHHHhh-CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHHHhhH
Confidence 455566678888877765 5532 45778889999999999999999988654222 2456788899999999999
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|..+|+.++. .|.
T Consensus 94 ~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 94 DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChh
Confidence 999999999997 675
No 40
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.71 E-value=0.053 Score=41.52 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=69.6
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..+..++.. +|.. ...+..+...+...+.|+.|+..+++.+-.-+ +....++..|.++..+++
T Consensus 27 ~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIKR-NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHTTCSHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHhh
Confidence 3456666788888887765 4432 45667888899999999999999988654322 235677888999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 100 ~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 9999999999997 7764
No 41
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.68 E-value=1.3 Score=41.00 Aligned_cols=92 Identities=12% Similarity=-0.052 Sum_probs=58.5
Q ss_pred hhcccccchHHHHHHHHhhCCCCC---chhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~---~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~ 187 (347)
..+++..++..+..|+.-+...+. .....+..+-..+...+.|+.|++.+.+.+--. +.+......++..|.+|
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 455566677777777766554322 234455666777777777777777777654311 12334455666677777
Q ss_pred HhhhcHHHHHHHHHHhhc
Q 019008 188 IGQKRFRKALELLHNVVT 205 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~ 205 (347)
..+++|++|.++|+.++.
T Consensus 233 ~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777775
No 42
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.66 E-value=0.24 Score=46.17 Aligned_cols=166 Identities=10% Similarity=0.049 Sum_probs=103.1
Q ss_pred hhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhcccccccC---C-chhhHHHHHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---L-PRDFFLYCYYGGMI 186 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~-~~~~l~Y~yy~G~i 186 (347)
...++...|+..++.|+......+ ......+..+-..+...+.|+.|...+.+.+--.+ . ......-++.-|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 356677778999999987654332 23466788888999999999999999988653222 1 34456778889999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---------hcchhH
Q 019008 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------NFSQPY 256 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---------~~~~pY 256 (347)
|..+++|++|.++|+.++. .|...-......++..+-.+. ...|+.. .- -....+..+ .....|
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK-NSQSQYE-DA----IPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhccchhHHHHH
Confidence 9999999999999999997 554322222233333322222 2234433 10 011111111 112347
Q ss_pred HHHHHHH-hcCChHHHHHHHHhccccccc
Q 019008 257 MELVNTY-NTGKIVELETYVQTNREKFES 284 (347)
Q Consensus 257 ~~la~a~-~~g~~~~~~~~~~~~~~~f~~ 284 (347)
..++.++ ..|+.++-...+++.-+...+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7777776 457766666666655544444
No 43
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.64 E-value=0.28 Score=45.79 Aligned_cols=169 Identities=9% Similarity=0.018 Sum_probs=107.0
Q ss_pred hhhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMI 186 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i 186 (347)
...++...|+..++.|+...... .......+..+-..+...+.|+.|...+.+.+--.+. ......-++.-|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 35566777899999988766532 2345667788889999999999999999886432221 23456777889999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hcchhHH
Q 019008 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NFSQPYM 257 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k--------~~~~pY~ 257 (347)
|..+++|++|.++|+.|+. ++...-......++-.+-.+. ...|+.. .- -....+..+ .....+.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY-DRSGDDQ-MA----VEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHH-HH----HHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhCChhHHHHHH
Confidence 9999999999999999997 443222222233333333222 2235443 11 111111111 1134577
Q ss_pred HHHHHH-hcCChHHHHHHHHhcccccccccc
Q 019008 258 ELVNTY-NTGKIVELETYVQTNREKFESDNN 287 (347)
Q Consensus 258 ~la~a~-~~g~~~~~~~~~~~~~~~f~~D~n 287 (347)
.++.++ ..|+.++-....++.-+...+.++
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 777776 568887777777776666665444
No 44
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.64 E-value=0.67 Score=40.51 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=67.8
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhH--------------HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTL--------------HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~--------------H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~ 180 (347)
.+....++..++.++...+.++ ..... +-.+.+.+...+.|+.|...+++-+-..|.+......+
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~ 188 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHE-LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDAL 188 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence 4556667888888777654332 22212 14567888899999999999888665445444566778
Q ss_pred HHHHHHHHhh----------hcHHHHHHHHHHhhc-CCcc
Q 019008 181 YYGGMIFIGQ----------KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 181 yy~G~i~~~~----------k~y~~A~~~l~~ai~-~P~~ 209 (347)
|..|.+|..+ ++|++|...|+.++. .|.+
T Consensus 189 ~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 189 VGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8889999877 899999999999996 7864
No 45
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.50 E-value=0.15 Score=52.59 Aligned_cols=154 Identities=13% Similarity=0.037 Sum_probs=102.9
Q ss_pred hhcccccchHHHHHHHH-------hhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIR-------KIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~-------r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i 186 (347)
..+.+..++..++.|+. ..+|+. ...+..+.+.++..+.|+.|+..+++.+-.-| +....+|+.|.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHH
Confidence 45566678888888872 334432 34677888999999999999999998664212 346778899999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHHHH
Q 019008 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNT 262 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la~a 262 (347)
+..+++|++|...|+.|+. .|..... +..+-.+ +...|+.. ...- ..+..+ .....|..++.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~-~~~~g~~~-~~~~-----~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAP------KLALAAT-AELAGNTD-EHKF-----YQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHH------HHHHHHH-HHHHTCCC-TTCH-----HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHH-HHHcCChH-HHHH-----HHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999997 8875322 2222222 34458877 3222 222222 344678999988
Q ss_pred Hh-cCChHHHHHHHHhcccccccccccc
Q 019008 263 YN-TGKIVELETYVQTNREKFESDNNLG 289 (347)
Q Consensus 263 ~~-~g~~~~~~~~~~~~~~~f~~D~n~g 289 (347)
+. .|+.+ +.++.++...+.|.++.
T Consensus 544 ~~~~g~~~---~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 544 RSAEGDRV---GAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHTTCHH---HHHHHHHTSCTTSTTHH
T ss_pred HHHcCCHH---HHHHHHHhhcccCcccH
Confidence 84 46544 45555566666666543
No 46
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.46 E-value=0.033 Score=41.23 Aligned_cols=91 Identities=7% Similarity=-0.210 Sum_probs=67.6
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh-hc
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-KR 192 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~-k~ 192 (347)
..++...++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-+. ......++..|.++..+ ++
T Consensus 18 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQL-DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp SSCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSC
T ss_pred HhhhHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCC
Confidence 345555677777777765 4432 345677888999999999999999886543232 11456778889999999 99
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|.++|+.++. .|..
T Consensus 93 ~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 93 EVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 9999999999997 6653
No 47
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.42 E-value=0.15 Score=41.77 Aligned_cols=90 Identities=10% Similarity=0.026 Sum_probs=68.1
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHH-HHhcCCc--hhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKCY--KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l-~l~~~~y--~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~ 189 (347)
...+....++..++.|+.. +|+. ...+..+... +...+.| +.|...+++.+-.-| +....++..|.++..
T Consensus 55 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 55 LWQNDYSNSLLAYRQALQL-RGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS---NEITALMLLASDAFM 127 (177)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHH
Confidence 3456666788888888766 4432 3455667777 7789999 999999988654322 234567788999999
Q ss_pred hhcHHHHHHHHHHhhc-CCcc
Q 019008 190 QKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+++|++|..+|+.++. .|..
T Consensus 128 ~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 128 QANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TTCHHHHHHHHHHHHHTCCTT
T ss_pred cccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999997 7765
No 48
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.39 E-value=0.29 Score=44.07 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=70.5
Q ss_pred hHhhhcccccchHHHHHHHHhhC--CCCCchh-hHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHH
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQ--SSTEHLT-TLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGG 184 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~--~~~~~lT-~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G 184 (347)
.....++...|+..+..|+.... +....+. ..+..+...|...+.|+.|+..+++.+--. +........++..|
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg 243 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33456667778899999884432 2222222 577788899999999999999999865311 11233567789999
Q ss_pred HHHHhhhcHHHH-HHHHHHhhcC
Q 019008 185 MIFIGQKRFRKA-LELLHNVVTA 206 (347)
Q Consensus 185 ~i~~~~k~y~~A-~~~l~~ai~~ 206 (347)
.+|..++++++| .++|+.|+..
T Consensus 244 ~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 244 ECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999 8889999863
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.35 E-value=1 Score=41.71 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHhhC--CCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHhhhc
Q 019008 118 PIRGVGPMLTAIRKIQ--SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~--~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++..+..++.... .........+..+...+...+.|+.|+..+.+.+--.+ ........++..|.++..+++
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 4445666666655432 12233455777888999999999999999988654222 233455678889999999999
Q ss_pred HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---------hcchhHHHHHHH
Q 019008 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------NFSQPYMELVNT 262 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---------~~~~pY~~la~a 262 (347)
|++|..+|+.++. .|...-......++..+..+. ...|+.. .- -....+..+ .....|..++.+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFN-TA----IEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHH-HH----HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 9999999999997 665433333344444433333 3345544 10 111111111 012256666666
Q ss_pred H-hcCChHHHHHHHHhccccccc
Q 019008 263 Y-NTGKIVELETYVQTNREKFES 284 (347)
Q Consensus 263 ~-~~g~~~~~~~~~~~~~~~f~~ 284 (347)
+ ..|+.++-.+..++.-+.+.+
T Consensus 353 ~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHhccHHHHHHHHHHHHHHHhh
Confidence 6 457766666666655555544
No 50
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.33 E-value=0.19 Score=37.48 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=67.5
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-+ +....++..|.++...++|
T Consensus 21 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALEL-DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCH
Confidence 455566678888887765 4432 34667888999999999999999988653222 1245667889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|..
T Consensus 94 ~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 94 DEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 999999999997 7764
No 51
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.32 E-value=0.15 Score=39.85 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=68.2
Q ss_pred hhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~ 188 (347)
..+++..++..++.|+...... .......+..+...+...+.|+.|...+++.+-.. +.+......++..|.++.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3455556777777777665432 23334567788899999999999999998864322 223445677888999999
Q ss_pred hhhcHHHHHHHHHHhhc
Q 019008 189 GQKRFRKALELLHNVVT 205 (347)
Q Consensus 189 ~~k~y~~A~~~l~~ai~ 205 (347)
.+++|++|.++|+.++.
T Consensus 101 ~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999986
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.26 E-value=0.7 Score=42.81 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=73.5
Q ss_pred HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHH
Q 019008 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMI 186 (347)
Q Consensus 110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i 186 (347)
......++...++..++.|+.....++.....++..+...+...+.|+.|...+++.+-. ..........++..|.+
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 334455666678888888887633323334467888899999999999999998886532 12245667888899999
Q ss_pred HHhhhcHHHHHHHHHHhhc
Q 019008 187 FIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~ 205 (347)
+..+++|++|..+|+.++.
T Consensus 136 ~~~~g~~~~A~~~~~~al~ 154 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLT 154 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999997
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.25 E-value=0.15 Score=42.03 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
..++..|.++..+++|++|.+.|+.++. .|.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 3445556666666666666666666665 554
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.24 E-value=0.2 Score=39.88 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=68.9
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-| .....++..|.++..+++|
T Consensus 25 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhccH
Confidence 455566678888887765 4433 45667788899999999999999988654322 2355678889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|..+|+.++. .|..
T Consensus 98 ~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 98 RAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 999999999997 7764
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.21 E-value=0.39 Score=39.92 Aligned_cols=91 Identities=9% Similarity=0.060 Sum_probs=60.0
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc-CCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
..+....++..+..++.. +|.. ...+..+...+... +.++.|...+++.+- .+........++..|.++...++
T Consensus 54 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSI-KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCC
Confidence 445555667777776654 4432 33556677777788 888888888777654 22223345566777888888888
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 129 ~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 8888888888886 6653
No 56
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.17 E-value=0.53 Score=42.26 Aligned_cols=92 Identities=10% Similarity=0.020 Sum_probs=70.6
Q ss_pred hhcccccchHHHHHHHHhhC---CCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~---~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~ 187 (347)
..++...|+..+..|+..+. ........++..+...+...+.|+.|+..+++.+--. .........++.-|.++
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 45666678888888886543 2233445577888999999999999999999865321 12334578899999999
Q ss_pred Hhhh-cHHHHHHHHHHhhc
Q 019008 188 IGQK-RFRKALELLHNVVT 205 (347)
Q Consensus 188 ~~~k-~y~~A~~~l~~ai~ 205 (347)
..++ +|++|.++|+.|+.
T Consensus 247 ~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHH
Confidence 9999 58999999999996
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.17 E-value=0.08 Score=45.44 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=73.6
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCc----hhhHHHHHHHHHH
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP----RDFFLYCYYGGMI 186 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~----~~~l~Y~yy~G~i 186 (347)
.....+....++..+..|+.. +|+ ....+..+...+...+.|+.|...+++.+-..|.. ......++..|.+
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~-~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKK-NYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-TCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHh-Ccc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 344566777788888888754 553 35677889999999999999999999876533321 2344778999999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCc
Q 019008 187 FIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
+..+++|++|.++|+.++. .|.
T Consensus 127 ~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997 675
No 58
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.27 Score=41.98 Aligned_cols=97 Identities=7% Similarity=0.048 Sum_probs=70.6
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCc---hhhHHHHHHHHHHhcCCchhhhhhhcccccccC------------------
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEH---LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------------ 171 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~---lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~------------------ 171 (347)
...++...++..+..++...+..+.. ....+..+...+...+.++.|...+++.+--.+
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence 34556666788888887765432211 256778888999999999999998887554111
Q ss_pred -----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 172 -----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 172 -----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+....++..|.++...++|++|..+|+.++. .|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 1334566778889999999999999999999997 7764
No 59
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.11 Score=38.73 Aligned_cols=80 Identities=11% Similarity=0.050 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHH
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYK 220 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~K 220 (347)
.+..+-..+...+.|+.|...+++.+-.-| +....++..|.++..+++|++|..+|+.++. .|.+.......+++-
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345667788899999999999988664322 2356678899999999999999999999998 787533333444444
Q ss_pred HHHH
Q 019008 221 KYIL 224 (347)
Q Consensus 221 k~iL 224 (347)
..-.
T Consensus 83 ~~~~ 86 (111)
T 2l6j_A 83 RLEL 86 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 60
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.09 E-value=0.16 Score=42.67 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=73.2
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-------------chhhHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------PRDFFL 178 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------~~~~l~ 178 (347)
....+....++..+..|+.. +|.. ...+..+...+...+.|+.|...+++.+-..+. ......
T Consensus 47 ~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 122 (213)
T 1hh8_A 47 YTILKNMTEAEKAFTRSINR-DKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence 33556677788888888876 4432 456788899999999999999999886543222 123457
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.++..|.++..+++|++|.++|+.++. .|..
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 788999999999999999999999997 7764
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.08 E-value=0.5 Score=40.65 Aligned_cols=97 Identities=7% Similarity=-0.109 Sum_probs=73.1
Q ss_pred HHhHhhhcccccchHHHHHHHHhh----CCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc-----CCchhhHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLY 179 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~----~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y 179 (347)
+......+....++..++.|+... .++.......+..+...+...+.|+.|...+.+.+-.. +........
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 333445666777888888888775 22223345667788899999999999999998865421 123456677
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008 180 CYYGGMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 180 ~yy~G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
++..|.++..+++|++|..+|+.++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999999999999996
No 62
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.01 E-value=0.12 Score=44.83 Aligned_cols=96 Identities=8% Similarity=-0.001 Sum_probs=71.0
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~---- 189 (347)
..++...++..+..++.. .|.+......+..+...+...+.|+.|...+++-+-..|.+...-.-+|+.|+++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 446666788888888776 444333345677788999999999999999998665444433333446778888875
Q ss_pred --------------hhcHHHHHHHHHHhhc-CCccc
Q 019008 190 --------------QKRFRKALELLHNVVT-APMSS 210 (347)
Q Consensus 190 --------------~k~y~~A~~~l~~ai~-~P~~~ 210 (347)
++++++|...|+.++. .|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 5799999999999997 88753
No 63
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.98 E-value=0.22 Score=42.64 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=56.5
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--------------------
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------------- 172 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------------- 172 (347)
...+....++..++.|+.. +|+. ...+..+-..+...+.|+.|...+++.+---|.
T Consensus 65 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQK-APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 3445555566666665544 4432 334555666666666666666666654321111
Q ss_pred ------------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 173 ------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 173 ------------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+.....-+|..|+.+...++|++|..+|+.|+. .|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 000111246679999999999999999999998 7863
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.17 Score=44.57 Aligned_cols=100 Identities=9% Similarity=-0.037 Sum_probs=73.8
Q ss_pred HHHhHhhhcccccchHHHHHHHHhhCC----CCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC------------
Q 019008 108 YKDQVLLLEAPIRGVGPMLTAIRKIQS----STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------ 171 (347)
Q Consensus 108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~----~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~------------ 171 (347)
++......++...++..++.++..... +.......+..+.+.+...+.++.|...+.+.+-..+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 333444566777788888888876432 1333456778889999999999999999887552100
Q ss_pred ----------------------------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008 172 ----------------------------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 172 ----------------------------------~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P 207 (347)
........++..|.+|..+++|++|..+|+.++. .|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1345667788899999999999999999999986 44
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.84 E-value=0.59 Score=37.28 Aligned_cols=90 Identities=4% Similarity=-0.122 Sum_probs=67.9
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++...++..+..++.. +|.. ...+..+.+.+...+.++.|...+.+.+-..+ +....++..|.++..+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCC
Confidence 3456666778888887766 4332 45667788999999999999999988654322 224667888999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 9999999999986 6654
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.83 E-value=2.3 Score=38.74 Aligned_cols=164 Identities=10% Similarity=-0.007 Sum_probs=98.7
Q ss_pred cccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhc
Q 019008 118 PIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++..+..|+...... .......+..+...+...+.|+.|...+++.+--. +.+......++..|.++..+++
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 444666666666554322 23345567788899999999999999998865322 2244556678889999999999
Q ss_pred HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---h------cchhHHHHHHH
Q 019008 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---N------FSQPYMELVNT 262 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~------~~~pY~~la~a 262 (347)
|++|..+|+.++. .|...-......++..+-.+. ...|+.. .- -....+..+ . ....|..++.+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYE-KA----IDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH-HHhCcHH-HH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999996 555433333344444333332 2345544 11 011111111 1 12356666766
Q ss_pred H-hcCChHHHHHHHHhcccccccccc
Q 019008 263 Y-NTGKIVELETYVQTNREKFESDNN 287 (347)
Q Consensus 263 ~-~~g~~~~~~~~~~~~~~~f~~D~n 287 (347)
+ ..|+.++-.+..++.-+.+.+-++
T Consensus 317 ~~~~g~~~~A~~~~~~al~~~~~~~~ 342 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEISREVGD 342 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 6 457766666666655555544443
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.81 E-value=0.22 Score=45.60 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=68.6
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..++.++.. +|... -...+..+...+...+.|+.|...+.+.+-.-| +....++..|.++..+++
T Consensus 188 ~~~g~~~~A~~~~~~al~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQ-NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHH-SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHh-CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Confidence 3455566678888888776 44311 245677888999999999999999988654322 224566788999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 263 ~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 9999999999997 7764
No 68
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.79 E-value=0.055 Score=41.67 Aligned_cols=66 Identities=12% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
-.+...++..+.|+.|...+++-+-..|........+|..|.++..+++|++|..+|+.++. .|.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 34567888999999999999886543343434447788899999999999999999999997 7764
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.75 E-value=1.9 Score=37.59 Aligned_cols=116 Identities=9% Similarity=-0.043 Sum_probs=75.5
Q ss_pred cccchHHHHHHHHhhCC--CCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhc
Q 019008 118 PIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~~--~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++..+..++..... +.......+..+...+...+.++.|...+++.+-.. +.+......++..|.++...++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 34455666655543321 223345567778899999999999999998865322 2244456688889999999999
Q ss_pred HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~ 234 (347)
|++|..+|+.++. .|...-......++-.+..+. ...|+..
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 280 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHhcCHH
Confidence 9999999999996 555433333344444333332 3345544
No 70
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.71 E-value=0.048 Score=41.27 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
...+..+-..+...+.|+.|...+++.+---| +....++..|.++..+++|++|.++|+.++. .|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 34567788999999999999999998764322 2344778889999999999999999999997 565
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.70 E-value=2.6 Score=38.88 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=74.2
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCC---chhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHH
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGG 184 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~---~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G 184 (347)
.....+++..|+..+..|+.-+...+. .....+..+-..+...+.|+.|++.+.+.+--. +.+......++..|
T Consensus 152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG 231 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 334567777889999999887765432 234567778899999999999999998865322 22445567788899
Q ss_pred HHHHhhhcHHHHHHHHHHhhc
Q 019008 185 MIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 185 ~i~~~~k~y~~A~~~l~~ai~ 205 (347)
.+|..+++|++|.++|+.++.
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999997
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.69 E-value=0.29 Score=43.02 Aligned_cols=95 Identities=6% Similarity=-0.072 Sum_probs=72.9
Q ss_pred HhhhcccccchHHHHHHHHhhC----CCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc-----CCchhhHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYY 182 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~----~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y~yy 182 (347)
....+....++..++.|+.... ++.......+..+...+...+.|+.|...+.+.+-.. +........++.
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 3345666678888888877642 2233456677888999999999999999998865422 224566778888
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhcC
Q 019008 183 GGMIFIGQKRFRKALELLHNVVTA 206 (347)
Q Consensus 183 ~G~i~~~~k~y~~A~~~l~~ai~~ 206 (347)
.|.++..+++|++|.++|+.++..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999974
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.66 E-value=0.24 Score=41.32 Aligned_cols=93 Identities=5% Similarity=-0.153 Sum_probs=71.9
Q ss_pred HhHhhh-cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q 019008 110 DQVLLL-EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (347)
Q Consensus 110 ~~~~~~-~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~ 188 (347)
...... +....++..+..++. .|....-...+..+...+...+.++.|...+.+.+-.-| +....++..|.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELARTKM 158 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHHHH
Confidence 334456 777778888888887 333333456778889999999999999999988654322 22456778899999
Q ss_pred hhhcHHHHHHHHHHhhc-CC
Q 019008 189 GQKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 189 ~~k~y~~A~~~l~~ai~-~P 207 (347)
.+++|++|...|+.++. .|
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999997 67
No 74
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.66 E-value=0.18 Score=47.05 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=74.7
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCC-----------CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-----------EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF 177 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-----------~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l 177 (347)
+..+...++...|+..++.|+......+ ......+..+..+++..+.|+.|+..+++.+---| +..
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~ 230 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS---NNE 230 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcH
Confidence 3334456667778888888887643321 01145778889999999999999999998764322 245
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+|..|.++..+++|++|..+|+.++. .|.+
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 6778999999999999999999999997 8875
No 75
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.65 E-value=0.098 Score=49.90 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=70.5
Q ss_pred hhhcccccchHHHHHHHHhhCC------------CCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQS------------STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~------------~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~ 180 (347)
...++...|+..++.|+..... ........+..+...++..+.|+.|+..+++.+-- + .+....+
T Consensus 234 ~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a~ 310 (370)
T 1ihg_A 234 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-D--PSNTKAL 310 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--TTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-C--chhHHHH
Confidence 3455566677778877763211 01123567788889999999999999999987642 2 2346678
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 181 YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 181 yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
|..|.++..+++|++|...|+.|+. .|.+
T Consensus 311 ~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999997 7864
No 76
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.65 E-value=1.4 Score=41.28 Aligned_cols=97 Identities=5% Similarity=-0.037 Sum_probs=73.9
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCC-CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~ 187 (347)
...+...+....++..+..++.. +|+. ......+..+...+...+.++.|+..+++.+-.-| +....++..|.++
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP---DNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHH
Confidence 33444567777788888888874 5543 22345778889999999999999999998653212 2346678889999
Q ss_pred HhhhcHHHHHHHHHHhhc-CCcc
Q 019008 188 IGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+++|++|..+|+.++. .|..
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHhcCHHHHHHHHHHHHHhCcch
Confidence 999999999999999997 7875
No 77
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.28 Score=46.07 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHh-HhhhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHH
Q 019008 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQ-VLLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLC 150 (347)
Q Consensus 74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~ 150 (347)
+..++...+..+...++.... ...+....+. ....+....++...+.++...... ......++..+.+.+
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKT-------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHH-------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchHH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 455566666666665543211 1111111121 122344455677777766554332 223466788899999
Q ss_pred HhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 151 LLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 151 l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
...+.|+.|++++..-... .+.....+.++..-|.+|..+++|++|..+++.+++ .|.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 9999999999999875332 233567789999999999999999999999999986 444
No 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.59 E-value=0.1 Score=45.45 Aligned_cols=91 Identities=8% Similarity=-0.029 Sum_probs=59.4
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++. ..+++......+..+...+...+.|+.|...+++.+-.-|. ....++..|.++..+++|
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCH
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCH
Confidence 34555567777777776 34444444555677777777888888888777775432221 224566677777778888
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|..+|+.++. .|.
T Consensus 125 ~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHHHhhcCCC
Confidence 888888877776 554
No 79
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.55 E-value=0.7 Score=38.01 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=69.9
Q ss_pred hhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cC-CchhhHHHHHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---IN-LPRDFFLYCYYGGMI 186 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~-~~~~~l~Y~yy~G~i 186 (347)
...+....++..++.|+......+ ......+..+...+...+.|+.|.+.+.+.+-- .+ .+......++..|.+
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 116 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV 116 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence 345566667888888887665433 234556677888999999999999999886442 22 233556778889999
Q ss_pred HHhhhcHHHHHHHHHHhhc
Q 019008 187 FIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~ 205 (347)
+..+++|++|..+|+.++.
T Consensus 117 ~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 117 ALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999986
No 80
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.53 E-value=0.096 Score=43.18 Aligned_cols=88 Identities=9% Similarity=0.056 Sum_probs=66.5
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..|+.. +|.. ...+..+-..+...+.|+.|+..+++.+---| +....++..|.++..+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL-NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP---GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc---hhhhHHHHHHHHHHHCCCH
Confidence 344455567777777654 5543 34567788999999999999999988654212 2356778889999999999
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|.++|+.|+. -|.
T Consensus 158 ~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhCCcc
Confidence 999999999997 664
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.49 E-value=0.71 Score=42.13 Aligned_cols=93 Identities=11% Similarity=-0.017 Sum_probs=61.3
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--------------------
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------------- 172 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------------- 172 (347)
...++...++..++.|+.. +|.. ...+..+...+...+.|+.|...+.+.+-.-|.
T Consensus 110 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLEL-QPNN---LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHCCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 3456666788888887765 4432 446778888899999999998888764321110
Q ss_pred ----------------------ch-hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 173 ----------------------PR-DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 173 ----------------------~~-~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+. .....++..|.++..+++|++|..+|+.++. .|..
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 246 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 11 0344556667777777777777777777775 5653
No 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.47 E-value=0.48 Score=42.54 Aligned_cols=93 Identities=8% Similarity=0.059 Sum_probs=65.0
Q ss_pred hhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchh-hHHHHHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRD-FFLYCYYGGMI 186 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~-~l~Y~yy~G~i 186 (347)
...++...++..+..|+........ .....+..+-..+...+.|+.|+..+.+.+- ..+.... ....++..|.+
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 3445566688888888765433221 2244667778888899999999999888652 1222222 23677888999
Q ss_pred HHhhhcHHHHHHHHHHhhc
Q 019008 187 FIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~ 205 (347)
|..+++|++|..+|+.++.
T Consensus 206 y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999885
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.45 E-value=0.68 Score=39.40 Aligned_cols=90 Identities=8% Similarity=-0.055 Sum_probs=70.1
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++..-++.. ...+..+...+...+.|+.|+..+++.+-.-| +....++..|.++..+++|
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY---NLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc---chHHHHHHHHHHHHHcccH
Confidence 45666678888888876643122 24555688999999999999999998764322 3566788899999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|...|+.++. .|.+
T Consensus 93 ~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 999999999997 8875
No 84
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.43 E-value=0.2 Score=48.99 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=72.9
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCC-----------CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-----------EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF 177 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-----------~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l 177 (347)
+..+...++...|+..++.|+......+ ......+..+..+++..+.|+.|+..+++.+---| +..
T Consensus 275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~ 351 (457)
T 1kt0_A 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS---ANE 351 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccH
Confidence 3334456667778888888887644321 01246778889999999999999999998764322 246
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+|..|.+|..+++|++|..+|+.|+. .|.+
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 6788999999999999999999999997 7865
No 85
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.42 E-value=2.7 Score=37.82 Aligned_cols=147 Identities=9% Similarity=-0.033 Sum_probs=90.1
Q ss_pred ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 019008 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (347)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~ 198 (347)
..++..+..|+..++|+. ..+|..+.......+.++.|..++++.+- +++ .+.-..++.-|.++..++++++|..
T Consensus 81 ~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p-~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 81 DEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IED-IDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SSS-SCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccc-cCccHHHHHHHHHHHHhcCHHHHHH
Confidence 457888999998777754 45788889999999999999999998764 332 2221123333677888999999999
Q ss_pred HHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh---hhcchhHHHHHHHH-hcCChHHHHH
Q 019008 199 LLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL---KNFSQPYMELVNTY-NTGKIVELET 273 (347)
Q Consensus 199 ~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~---k~~~~pY~~la~a~-~~g~~~~~~~ 273 (347)
.|+.++. .|.. . ++|-.+.++..-..|+.. . .-....+.. ......+..++... ..|+.++-..
T Consensus 156 ~~~~a~~~~p~~-~-----~~~~~~a~~~~~~~~~~~-~----A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 156 IFKKAREDARTR-H-----HVYVTAALMEYYCSKDKS-V----AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHHHHHTSTTCC-T-----HHHHHHHHHHHHTSCCHH-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhcCCCC-H-----HHHHHHHHHHHHHcCCHH-H----HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999998 4543 2 122233333222234433 1 111111111 12234555666655 4478777777
Q ss_pred HHHhcccc
Q 019008 274 YVQTNREK 281 (347)
Q Consensus 274 ~~~~~~~~ 281 (347)
..++.-..
T Consensus 225 ~~~~al~~ 232 (308)
T 2ond_A 225 LFERVLTS 232 (308)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 77765554
No 86
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.38 E-value=0.11 Score=38.29 Aligned_cols=62 Identities=16% Similarity=0.084 Sum_probs=49.5
Q ss_pred HHHHHHhcCCchhhhhhhcccccccCCchhhHH-HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008 146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (347)
Q Consensus 146 ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~-Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~ 210 (347)
....++..+.|+.|...+++.+-.-| . ... .++..|.++..+++|++|..+|+.++. .|...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--V-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--S-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--C-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 45677889999999999988654322 2 234 778889999999999999999999997 78653
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.33 E-value=0.16 Score=38.25 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=62.1
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..+..++.. +|.. ...+..+...+...+.++.|...+++.+-..+. ....++..|.++...+++
T Consensus 47 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 47 KQGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCH
T ss_pred HhcCHHHHHHHHHHHHHH-CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccH
Confidence 345555677777777654 4432 345667788899999999999988875432221 234556678999999999
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|..+|+.++. .|.
T Consensus 120 ~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 120 DEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCCC
Confidence 999999999886 553
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.31 E-value=0.054 Score=44.23 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 019008 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (347)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~ 198 (347)
-++|..++.|+.. +|. -...+-.+.+++...+.|+.|.+.+++.+-- + .+....++..|.++..+++|++|..
T Consensus 14 e~ai~~~~~a~~~-~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~--p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 14 ERYIASVQGSTPS-PRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-Q--ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHSCS-HHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccc-Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 3455655555443 221 1334567889999999999999999987642 2 1346678889999999999999999
Q ss_pred HHHHhhc-CCcc
Q 019008 199 LLHNVVT-APMS 209 (347)
Q Consensus 199 ~l~~ai~-~P~~ 209 (347)
+|+.++. .|..
T Consensus 87 ~~~~al~~~p~~ 98 (150)
T 4ga2_A 87 CYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHHhCCCC
Confidence 9999998 8875
No 89
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.29 E-value=0.4 Score=42.87 Aligned_cols=84 Identities=7% Similarity=-0.084 Sum_probs=37.4
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~ 194 (347)
.+....++..+..++.. +|.. ...+..+...+...+.++.|...+++.+-..| +....++..|.++..+++|+
T Consensus 133 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 133 GADYTAAITFLDKILEV-CVWD---AELRELRAECFIKEGEPRKAISDLKAASKLKS---DNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS---CCHHHHHHHHHHHHHHTCHH
T ss_pred ccCHHHHHHHHHHHHHh-CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Confidence 34444455555544433 2221 22344455555555555555555554332211 11233344445555555555
Q ss_pred HHHHHHHHhhc
Q 019008 195 KALELLHNVVT 205 (347)
Q Consensus 195 ~A~~~l~~ai~ 205 (347)
+|...|+.++.
T Consensus 206 ~A~~~~~~a~~ 216 (359)
T 3ieg_A 206 LSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555553
No 90
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.27 E-value=0.18 Score=43.48 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=70.1
Q ss_pred cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHH
Q 019008 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (347)
Q Consensus 116 ~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~ 195 (347)
+....++..++.|+.. +|+. ...+..+-..+...+.++.|+..+++.+- ++ +....++..|.++..+++|++
T Consensus 98 g~~~~A~~~~~~al~~-~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~---~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV-NPRY---APLHLQRGLVYALLGERDKAEASLKQALA-LE---DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc---cchHHHHHHHHHHHHcCCHHH
Confidence 5566688888888765 6643 45778888999999999999999998654 22 456677899999999999999
Q ss_pred HHHHHHHhhc-CCcc
Q 019008 196 ALELLHNVVT-APMS 209 (347)
Q Consensus 196 A~~~l~~ai~-~P~~ 209 (347)
|...|+.++. .|..
T Consensus 170 A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 170 ALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 9999999997 7875
No 91
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.26 E-value=0.28 Score=42.14 Aligned_cols=92 Identities=7% Similarity=-0.049 Sum_probs=69.3
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..+..++. .+....-...+..+...+...+.++.|...+.+.+-.-+ .....++..|.++..+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCC
Confidence 345666678888888776 222222355677888999999999999999988654222 225567888999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 191 ~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhCcCc
Confidence 9999999999997 6643
No 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.10 E-value=1.2 Score=43.45 Aligned_cols=90 Identities=3% Similarity=-0.054 Sum_probs=72.5
Q ss_pred Hhhhccc-ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 112 VLLLEAP-IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 112 ~~~~~~~-~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
....+.. ..|+..++.|+.. +|.. ...+..+-..+...+.|+.|...+++.+-- + +. ...++..|.++..+
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~--~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKL-EPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTH-C-KN--KVSLQNLSMVLRQL 183 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-C-CC--HHHHHHHHHHHTTC
T ss_pred HHhccccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CC--HHHHHHHHHHHHHh
Confidence 3455666 7788999888765 5543 457788999999999999999999987643 2 22 37888999999999
Q ss_pred ---------hcHHHHHHHHHHhhc-CCcc
Q 019008 191 ---------KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 ---------k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|..+|+.++. .|..
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999997 7875
No 93
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.07 E-value=0.19 Score=44.68 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=48.5
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC------chhhHHHHHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIF 187 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~------~~~~l~Y~yy~G~i~ 187 (347)
..++...++..++.++.. +|.. ...+..+...+...+.|+.|...+.+.+-..+. .......++..|.++
T Consensus 171 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSI-APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HTTCHHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 344555566666655544 3322 234556666666666666666666554332110 122334455556666
Q ss_pred HhhhcHHHHHHHHHHhhc-CCc
Q 019008 188 IGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
..+++|++|..+|+.++. .|.
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~ 268 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQ 268 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 666666666666666664 454
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.04 E-value=0.17 Score=40.58 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=67.8
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..+..++.. +|.. ...+..+...+...+.++.|...+++.+-..+ +....++..|.++..+++
T Consensus 53 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 53 VKTGAVDRGTELLERSLAD-APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP---INFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHHHHcCc
Confidence 3456666788888888766 4432 34567788899999999999999987654322 234667788999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|.++|+.++. .|..
T Consensus 126 ~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 9999999999997 5653
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.04 E-value=0.25 Score=42.58 Aligned_cols=129 Identities=8% Similarity=-0.083 Sum_probs=85.4
Q ss_pred hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhC----CCCCchhhHHHHHHHH
Q 019008 74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQL 149 (347)
Q Consensus 74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~----~~~~~lT~~H~~ll~l 149 (347)
.+..+..+....+....+..-...+..+..+. ......+....++..+..|+.... ++.......+..+...
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILA----LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 45556666666554321100011122333333 333345666677888888776641 2233456677888999
Q ss_pred HHhcCCchhhhhhhccccccc-----CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008 150 CLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (347)
Q Consensus 150 ~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~ 206 (347)
+...+.|+.|...+.+.+-.. +........++..|.++..+++|++|.++|+.++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999865422 223566788889999999999999999999999965
No 96
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.03 E-value=0.22 Score=42.95 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=71.1
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh-
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ- 190 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~- 190 (347)
+...++...++..++.|+.. +|+. ...+..+-..+...+.++.|...+++.+---| +....++..|.++..+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE-NPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTP---RYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-SSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhh
Confidence 34556666788888887754 6543 45678889999999999999999988654212 2355677889999999
Q ss_pred ----------hcHHHHHHHHHHhhc-CCcc
Q 019008 191 ----------KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 ----------k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|...|+.++. .|..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~ 117 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRY 117 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence 999999999999997 8875
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.01 E-value=0.31 Score=36.57 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=64.6
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..++.++.. +|.. ...+..+...+...+.++.|...+++.+-.-+ .....++..|.++...++|
T Consensus 13 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCH
T ss_pred HcCcHHHHHHHHHHHHHc-CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHhcCH
Confidence 345555677777777654 4432 34556778889999999999999988653222 1244566779999999999
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|..+|+.++. .|.
T Consensus 86 ~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 86 DEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 999999999997 554
No 98
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.00 E-value=3.6 Score=38.86 Aligned_cols=91 Identities=9% Similarity=-0.035 Sum_probs=66.9
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
.....+....++..+..++.. +|. ...+..+...+...+.++.|...+++.+-.-|. ....++..|.++...
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIEL-FPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHhh-Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHHHh
Confidence 334556666778888777655 443 667788889999999999999998886543222 233567778899999
Q ss_pred hcHHHHHHHHHHhhc-CCcc
Q 019008 191 KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|..+|+.++. .|..
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHhChhh
Confidence 999999999999986 6654
No 99
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.95 E-value=2.6 Score=41.00 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=53.1
Q ss_pred hhcccccchHHHHHHHHhhC---CCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 114 LLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~---~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
..++...++..++.++.... .++......+..+...|...+.++.|...+++-+-.-| +....++..|.+|...
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST---NDANVHTAIALVYLHK 563 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---CCHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHh
Confidence 34445556666666655431 12222345566666777777777777776665432111 1234555666677777
Q ss_pred hcHHHHHHHHHHhhc-CCcc
Q 019008 191 KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|.++|+.++. .|.+
T Consensus 564 g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 777777777777775 5654
No 100
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.11 Score=44.48 Aligned_cols=89 Identities=12% Similarity=0.038 Sum_probs=62.0
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
.....+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-| +....++..|.++..+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~ 220 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQIAV 220 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhc-Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHH
Confidence 334456666677777777665 3332 34667777888888888888888877643222 2345667778888888
Q ss_pred hcHHHHHHHHHHhhc-C
Q 019008 191 KRFRKALELLHNVVT-A 206 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~ 206 (347)
++|++|..+|+.++. .
T Consensus 221 g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 221 KEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 888888888888886 5
No 101
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.90 E-value=0.15 Score=36.49 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+...+...+.|+.|.+.+.+.+-.-| +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34566778889999999999999988654222 2346678889999999999999999999997 7764
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.85 E-value=0.12 Score=44.23 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
++..+-..+...+.|+.|...+++.+---| +....++..|.++..+++|++|..+|+.++. .|.+
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAP---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 334488899999999999999998654222 2356778889999999999999999999997 8875
No 103
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.81 E-value=0.24 Score=44.79 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=70.8
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++...|+..+..|+.. +|+. ...+..+...+...+.|+.|...+++.+-- + .+....+|..|.++..+++
T Consensus 15 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-D--GQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-C--TTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCC
Confidence 3456666788888888876 5532 456788889999999999999999987642 2 2345677888999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|...|+.++. .|.+
T Consensus 88 ~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 88 YDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 9999999999997 7753
No 104
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.68 E-value=0.15 Score=39.84 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+...+...+.|+.|.+.+.+.+-.-+........++..|.++..+++|++|..+|+.++. .|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 445677889999999999999999987643333334578888899999999999999999999997 6654
No 105
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.62 E-value=3 Score=39.72 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=42.6
Q ss_pred cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 019008 118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~ 197 (347)
...++..+..|+.. +|.. ...|..+-.++...+.|+.|+..+++.+-- + .+...-+++.|.++..+++|++|.
T Consensus 148 ~~eAl~~~~~al~l-~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-d--P~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 148 LHEEMNYITAIIEE-QPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQ-D--AKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--ccCHHHHHHHHHHHHHcCChHHHH
Confidence 44445555444432 3322 223344444445555555555555554321 1 122334456666666666666676
Q ss_pred HHHHHhhc-CCcc
Q 019008 198 ELLHNVVT-APMS 209 (347)
Q Consensus 198 ~~l~~ai~-~P~~ 209 (347)
.+|+.++. -|.+
T Consensus 221 ~~~~~al~l~P~~ 233 (382)
T 2h6f_A 221 QYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 66666665 5543
No 106
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.56 E-value=0.34 Score=41.97 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=67.1
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
....+....++..++.|+.. +|.. ...+..+...+...+.|+.|...+++.+-.-| .....++..|.++..++
T Consensus 53 ~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAI-RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---TYNYAHLNRGIALYYGG 125 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHHhc
Confidence 33456666788888887765 4432 44667788888999999999998888654222 12456777888999999
Q ss_pred cHHHHHHHHHHhhc-CCcc
Q 019008 192 RFRKALELLHNVVT-APMS 209 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~~ 209 (347)
+|++|..+|+.++. .|..
T Consensus 126 ~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHhCCCC
Confidence 99999999999997 7764
No 107
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.22 Score=45.98 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH
Q 019008 257 MELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ 336 (347)
Q Consensus 257 ~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~ 336 (347)
.++-+++..||..+|-+...+...- ..-.--++..+...++...+..+.++|.+||++++++.++.+|++|+..++.+
T Consensus 146 l~le~al~eGnY~kff~l~~~~~~p--~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 146 IKLDRWLMEGSYQKAWDLLQSGSQN--ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp HHHHHHHHHTCSHHHHHHHHTCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455777889988887766543211 00112488899999999999999999999999999999999999999988875
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.22 E-value=0.36 Score=47.49 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=70.0
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~ 194 (347)
.++...|+..++.|+.. +|+. ...+..+...+...+.|+.|+..+++.+-- + .+....++..|.+|..+++|+
T Consensus 19 ~g~~~~A~~~~~~Al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 19 AKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-D--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-C--TTCHHHHHHHHHHHHHHTCHH
T ss_pred hCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHH
Confidence 44555677888887765 5543 557788899999999999999999987542 2 134567788899999999999
Q ss_pred HHHHHHHHhhc-CCccc
Q 019008 195 KALELLHNVVT-APMSS 210 (347)
Q Consensus 195 ~A~~~l~~ai~-~P~~~ 210 (347)
+|..+|+.++. .|...
T Consensus 92 eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 92 AALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHhCCCCH
Confidence 99999999997 78754
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.21 E-value=0.18 Score=41.79 Aligned_cols=66 Identities=8% Similarity=-0.157 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~ 210 (347)
.+..+-..+...+.|+.|...+++.+---| +...+++..|.++..+++|++|.++|+.++. .|.+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 456677888999999999999998664222 3466888899999999999999999999998 88753
No 110
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.16 E-value=0.19 Score=42.73 Aligned_cols=88 Identities=15% Similarity=0.027 Sum_probs=47.3
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..+..++... |.. ...+..+...+...+.++.|...+++.+-.-+ +....++..|.++...++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCC
T ss_pred HhccHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCH
Confidence 3444445556665555442 221 22445556666666666666666665432211 1233445556666666666
Q ss_pred HHHHHHHHHhhc-CCc
Q 019008 194 RKALELLHNVVT-APM 208 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~ 208 (347)
++|..+|+.++. .|.
T Consensus 176 ~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCcc
Confidence 666666666665 443
No 111
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.11 E-value=5.8 Score=38.49 Aligned_cols=85 Identities=11% Similarity=-0.029 Sum_probs=58.5
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..+....++..++.++.. +|.. ...+..+...|...+.++.|..++++-+-.-+. ....++.-|.++...++|
T Consensus 419 ~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARL-FQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHTCHHHHHHHHHHHHHT-TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCH
Confidence 455666677777777654 3322 234567778888888888888888875432121 123466778888888899
Q ss_pred HHHHHHHHHhhc
Q 019008 194 RKALELLHNVVT 205 (347)
Q Consensus 194 ~~A~~~l~~ai~ 205 (347)
++|.++|+.++.
T Consensus 492 ~~A~~~~~~~~~ 503 (597)
T 2xpi_A 492 QTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988888886
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.10 E-value=0.22 Score=39.74 Aligned_cols=65 Identities=8% Similarity=-0.187 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+..+...++..+.|+.|...+.+.+-.-| +...+++..|.++..+++|++|..+|+.++. .|.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 445667888999999999999988654222 3456788899999999999999999999997 7865
No 113
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.07 E-value=1.7 Score=39.09 Aligned_cols=100 Identities=11% Similarity=-0.045 Sum_probs=72.2
Q ss_pred HhHhhh-cccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccCCch----hhHHHHHH
Q 019008 110 DQVLLL-EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR----DFFLYCYY 182 (347)
Q Consensus 110 ~~~~~~-~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~----~~l~Y~yy 182 (347)
...... +.+..|+..++.|+......+. .....+..+...+...+.|+.|+..+++.+---+... ....+++-
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 333443 7788899999999887654332 2244567788999999999999999998654322211 23456777
Q ss_pred HHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 183 GGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 183 ~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.|.++..++++++|..+|+.++. .|..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 89999999999999999999998 7764
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.05 E-value=0.21 Score=40.56 Aligned_cols=68 Identities=6% Similarity=-0.162 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~ 210 (347)
...+..+...+...+.|+.|...+.+.+-.-| ....+++..|.++..+++|++|..+|+.++. .|.+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34556678899999999999999988654212 2356678899999999999999999999997 78653
No 115
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=93.04 E-value=0.2 Score=44.98 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHH
Q 019008 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL 335 (347)
Q Consensus 256 Y~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~ 335 (347)
=..|.+....|+..+|=+.++... +....|.-...++++.-..-+.++|++|+++++++.+|..|+++++..+.
T Consensus 102 i~~L~~~L~~~~y~~fW~~l~~~~------~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 102 ILYLGDLLETCHFQAFWQALDENM------DLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTC------HHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCh------hHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 356778888999887777665421 11223333456778888899999999999999999997667899988886
Q ss_pred H
Q 019008 336 Q 336 (347)
Q Consensus 336 ~ 336 (347)
+
T Consensus 176 ~ 176 (226)
T 1rz4_A 176 K 176 (226)
T ss_dssp H
T ss_pred H
Confidence 5
No 116
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.93 E-value=0.15 Score=44.24 Aligned_cols=87 Identities=14% Similarity=0.023 Sum_probs=64.6
Q ss_pred cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHH
Q 019008 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (347)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~ 199 (347)
.++..+..++.....++..-...+..+...+...+.|+.|...+++.+-.-| .....++..|.++...++|++|..+
T Consensus 23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 3556666666553222223455677888999999999999999988654222 2345677889999999999999999
Q ss_pred HHHhhc-CCcc
Q 019008 200 LHNVVT-APMS 209 (347)
Q Consensus 200 l~~ai~-~P~~ 209 (347)
|+.++. .|..
T Consensus 100 ~~~al~~~~~~ 110 (275)
T 1xnf_A 100 FDSVLELDPTY 110 (275)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCccc
Confidence 999997 7764
No 117
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.89 E-value=0.34 Score=44.03 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=48.6
Q ss_pred cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 019008 118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~ 197 (347)
...++..+..++.. +|+.. -...+..+...+...+.|+.|...+.+.+-.-| +....++..|.++..+++|++|.
T Consensus 197 ~~~A~~~~~~a~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 197 FLEVKELFLAAVRL-DPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHH-STTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh-CcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHcCCHHHHH
Confidence 33455556555543 44311 134555666677777777777777666443211 12344556666777777777777
Q ss_pred HHHHHhhc-CCc
Q 019008 198 ELLHNVVT-APM 208 (347)
Q Consensus 198 ~~l~~ai~-~P~ 208 (347)
.+|+.++. .|.
T Consensus 272 ~~~~~al~~~~~ 283 (368)
T 1fch_A 272 AAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 77777765 554
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.22 Score=38.35 Aligned_cols=65 Identities=6% Similarity=-0.095 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+...-..+...+.|+.|+..+++.+-.-| +....++..|.++..+++|++|...|+.++. .|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345566788999999999999998764322 2357788899999999999999999999997 7764
No 119
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.86 E-value=0.33 Score=41.11 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=66.9
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..++.++.. +|.. ...+..+...+...+.++.|...+++.+-..+. ....++..|.++..+++
T Consensus 68 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 68 SSVNELERALAFYDKALEL-DSSA---ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---NGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHHHc-CCcc---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcc
Confidence 3456666788888887765 4432 456778889999999999999999886542221 23456778899999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|..+|+.++. .|..
T Consensus 141 ~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 141 PKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 9999999999997 6753
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=92.85 E-value=0.66 Score=41.90 Aligned_cols=93 Identities=10% Similarity=-0.043 Sum_probs=63.0
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-------------------
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------------------- 172 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~------------------- 172 (347)
+...+....++..++.|+.. +|+. ...+..+.+.++..+.++.|...+++-+-.-|.
T Consensus 127 ~~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 127 LMQESNYTDALPLLXDAWQL-SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence 34566777788888887765 6543 457788999999999999999999875432111
Q ss_pred ------------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 173 ------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 173 ------------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
..+....+|..|.++...++|++|...|+.++. .|.
T Consensus 203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 112344555566666666666666666666665 554
No 121
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.84 E-value=6 Score=36.73 Aligned_cols=153 Identities=9% Similarity=0.035 Sum_probs=94.9
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCch---hhH---------HHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---DFF---------LYC 180 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~---~~l---------~Y~ 180 (347)
...+....++..++.++.. +|+. ...+..+...+...+.++.|...+++.+-.-|... ... .-+
T Consensus 71 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQL-KMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence 3456666788888888765 5532 55778889999999999999999988654323221 111 114
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh---hhcchhH
Q 019008 181 YYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL---KNFSQPY 256 (347)
Q Consensus 181 yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~---k~~~~pY 256 (347)
+-.|.++...++|++|..+|+.++. .|.... ++-.+. ..+...|+.. .- -....+.. ......|
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~-~~~~~~g~~~-~A----~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAE------LRELRA-ECFIKEGEPR-KA----ISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHH-HHHHHTTCGG-GG----HHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHH-HHHHHCCCHH-HH----HHHHHHHHHhCCCCHHHH
Confidence 5568899999999999999999997 675421 222222 1223456655 21 11222222 1234567
Q ss_pred HHHHHHH-hcCChHHHHHHHHhcccc
Q 019008 257 MELVNTY-NTGKIVELETYVQTNREK 281 (347)
Q Consensus 257 ~~la~a~-~~g~~~~~~~~~~~~~~~ 281 (347)
..++..+ ..|+.++-...+++....
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888877 457766655555544333
No 122
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.80 E-value=2.5 Score=40.36 Aligned_cols=89 Identities=8% Similarity=0.047 Sum_probs=68.4
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..++.++.. +|+ ...+..+...+...+.|+.|...+.+.+-.-| +....++..|.++...++
T Consensus 254 ~~~~~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL-HPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HhcccHHHHHHHHHHHHhc-CCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCC
Confidence 3456666788888887764 554 34567788899999999999999988654322 234557888999999999
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
|++|...|+.++. .|..
T Consensus 326 ~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 9999999999997 7764
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.74 E-value=0.37 Score=36.55 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=56.1
Q ss_pred chhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 138 HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 138 ~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.-...+..+...+...+.|+.|...+++.+-.-+ +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 3455667788999999999999999998654322 2356788899999999999999999999997 6753
No 124
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.64 E-value=0.17 Score=39.65 Aligned_cols=63 Identities=11% Similarity=-0.126 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
-.+...++..+.++.|...+++.+-.-| +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4566788999999999999998764322 3466778899999999999999999999998 7864
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.64 E-value=0.51 Score=38.53 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=26.6
Q ss_pred cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 153 ~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.+.|+.|...+.+.+-.-| +....++..|.++...++|++|..+|+.++. .|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 76 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76 (177)
T ss_dssp ----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4455555555544332111 1234556666666666666666666666665 554
No 126
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.62 E-value=0.77 Score=44.83 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=69.5
Q ss_pred cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc--------CCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA--------KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 116 ~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~--------~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~ 187 (347)
+....|+..++.|+.. +|+. ...+..+...+... +.|+.|+..+++.+---|...+....++..|.++
T Consensus 193 g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQM-DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 6666788888888775 5543 34567777777777 8899999999886542121225678888999999
Q ss_pred HhhhcHHHHHHHHHHhhc-CCcc
Q 019008 188 IGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
..+++|++|.++|+.++. .|..
T Consensus 269 ~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999997 7865
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.59 E-value=0.25 Score=38.99 Aligned_cols=68 Identities=7% Similarity=0.015 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 139 lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
....|...=..+...+.|+.|+..+++.+---| .....++..|.++..+++|++|...|+.|+. -|..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 355667777889999999999999998764222 2356788899999999999999999999997 6764
No 128
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.49 E-value=0.27 Score=38.07 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+...+...+.|+.|...+.+.+-.-| +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 44567788899999999999999998654322 2356788889999999999999999999997 7764
No 129
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.48 E-value=0.74 Score=41.84 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=69.4
Q ss_pred HHHhHhhhcccccchHHHHHHHHh-hCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008 108 YKDQVLLLEAPIRGVGPMLTAIRK-IQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (347)
Q Consensus 108 ~~~~~~~~~~~~~~i~~L~~Ai~r-~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i 186 (347)
+...+...+....++..+...+.. .+|+. +..|..+...+...+.++.|+..++++ +....++..|.+
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~~--------~~~~~~~~l~~~ 139 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSRSVDVTN---TTFLLMAASIYFYDQNPDAALRTLHQG--------DSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHSCCCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTTC--------CSHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhCC--------CCHHHHHHHHHH
Confidence 334444444455677888777655 35643 456788889999999999999999992 235577788999
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 187 FIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+..++++++|...|+.++. .|..
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCc
Confidence 9999999999999999997 7764
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.43 E-value=0.57 Score=42.04 Aligned_cols=93 Identities=8% Similarity=0.036 Sum_probs=70.5
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCc--hhhHHHHHHHHHHhcCCchhhhhhhcccccc---c-CCchhhHHHHHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---I-NLPRDFFLYCYYGGMI 186 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~--lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i-~~~~~~l~Y~yy~G~i 186 (347)
...++...|+..+..|+......+.. ...++..+-..+...+.|+.|+..+.+.+-. . .........++..|.+
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34455667899999998843333322 2335677888999999999999999986631 1 1245667788999999
Q ss_pred HHhhhcHHHHHHHHHHhhc
Q 019008 187 FIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~ 205 (347)
|..+++|++|.++++.++.
T Consensus 206 y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 206 LYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999996
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.39 E-value=0.23 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+-..+...+.|+.|+..+++.+-.-| +...+++..|.++..+++|++|..+|+.++. .|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 44567778899999999999999998764322 2367788899999999999999999999997 7764
No 132
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.35 E-value=0.29 Score=39.73 Aligned_cols=89 Identities=9% Similarity=-0.108 Sum_probs=68.9
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...|+..+..|+.. +|+. ...|..+-..+...+.++.|...+.+.+---| +....++..|.++..+++|
T Consensus 43 ~~~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 43 EAKEYDLAKKYICTYINV-QERD---PKAHRFLGLLYELEENTDKAVECYRRSVELNP---TQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCSS
T ss_pred HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCh
Confidence 456666788888888765 6643 56788999999999999999999998764212 2345677789999999999
Q ss_pred HHHHH-HHHHhhc-CCcc
Q 019008 194 RKALE-LLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~-~l~~ai~-~P~~ 209 (347)
++|.. +++.|+. .|.+
T Consensus 116 ~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 116 DGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp SSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 87664 5799998 8875
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.24 E-value=0.54 Score=35.24 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.+..+...+...+.|+.|...+.+.+-..| +....++..|.++..+++|++|..+|+.++. .|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 456677888999999999999988654322 2356678889999999999999999999986 554
No 134
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.21 E-value=0.51 Score=39.77 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=48.6
Q ss_pred HHHHHHHhcC---CchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 145 EFLQLCLLAK---CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 145 ~ll~l~l~~~---~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+.....+++ .++.|..+++.-+- .+.+.+.-.|+||.|..++.+++|++|..+++.++. -|.+
T Consensus 37 ~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 37 EYAWCLVRSKYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3444555666 56688888877443 222335678899999999999999999999999997 8875
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.02 E-value=0.3 Score=35.96 Aligned_cols=64 Identities=14% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.+..+...+...+.|+.|...+++.+-..| .....++..|.++..+++|++|...|+.++. .|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 456677888999999999999988654322 2356778889999999999999999999997 564
No 136
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.84 E-value=0.39 Score=42.53 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=57.9
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~ 194 (347)
.++...++..+..++.. +|.. ...+..+...+...+.++.|...+.+.+-.-| +....++..|.++...++|+
T Consensus 151 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEM-NPND---AQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp HHHHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHH
Confidence 34444566666666654 4432 34566777788888888888888877543212 22455667788888888888
Q ss_pred HHHHHHHHhhc-CCcc
Q 019008 195 KALELLHNVVT-APMS 209 (347)
Q Consensus 195 ~A~~~l~~ai~-~P~~ 209 (347)
+|..+|+.++. .|..
T Consensus 224 ~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 224 EALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCCC
Confidence 88888888886 6653
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.70 E-value=0.23 Score=39.19 Aligned_cols=64 Identities=8% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.|..+=..+...+.|+.|+..+++.+- +++ +...+++..|.+|..+++|++|.+.|+.++. .|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE-LDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 345556678899999999999998764 221 2356788899999999999999999999996 564
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.70 E-value=0.31 Score=40.88 Aligned_cols=86 Identities=7% Similarity=0.067 Sum_probs=64.2
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..+..++ +++ ...+..+...+...+.|+.|...+++.+-.-| .....++..|.++..+++|
T Consensus 18 ~~~~~~~A~~~~~~a~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ---DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HTTCHHHHHHHHHTSS---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHc---CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcccH
Confidence 4455555666666663 332 34677888899999999999999988654222 2356677889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|.++|+.++. .|.+
T Consensus 88 ~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGN 104 (213)
T ss_dssp HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 999999999997 7764
No 139
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.69 E-value=0.37 Score=41.58 Aligned_cols=94 Identities=5% Similarity=-0.092 Sum_probs=64.9
Q ss_pred hcccccchHHHHHHHHhhCCCCCchh-------------hHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLT-------------TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT-------------~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~y 181 (347)
.++...|+..++.++.+++.+..... ..+..+.+.+...+.|+.|...+++-+-..|.+...-.-++
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 34556678888887777544332111 11234556778889999999888886655454444456778
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 182 YGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
..|.++..++++++|...|+.+.. .|.
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 889999999999999999988886 554
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.47 E-value=0.32 Score=45.38 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=64.9
Q ss_pred hhcccccchHHHHHHHHhhCCCCCc--------------hhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEH--------------LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLY 179 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~--------------lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y 179 (347)
..++...|+..++.|+.. +|.... ....|..+..+++..+.|+.|+..+++.+-- + .+....
T Consensus 191 ~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a 266 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAY-MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-E--EKNPKA 266 (338)
T ss_dssp SSSCCHHHHHHHHHHHHH-SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-C--TTCHHH
T ss_pred hcCCHHHHHHHHHHHHHH-hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--CCCHHH
Confidence 445555566767666654 332110 1137788889999999999999999886542 2 134567
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 180 ~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+|..|.++..+++|++|..+|+.++. .|.+
T Consensus 267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 88999999999999999999999997 7764
No 141
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=91.42 E-value=0.51 Score=42.94 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=75.2
Q ss_pred HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~ 189 (347)
..+...+.+-.|+..++.++.. +|+. ..+.+...++.++...+.|+.|..++++-+-..| +....++-.|.++..
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p---~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQ-DEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS---PTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-CcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHH
Confidence 3445667777788888887765 5543 2333333455666666889999999887654323 235567778999999
Q ss_pred hhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008 190 QKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~ 234 (347)
+++|++|...|+.++. .|.+. +++-.+..+. ...|+..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~------~~l~~l~~~~-~~~g~~~ 251 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHP------ETLINLVVLS-QHLGKPP 251 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHH-HHTTCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH-HHcCCCH
Confidence 9999999999999997 77642 2233444333 3457654
No 142
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.32 E-value=0.71 Score=48.25 Aligned_cols=93 Identities=12% Similarity=-0.019 Sum_probs=57.0
Q ss_pred HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008 110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~ 189 (347)
..+.+.++...|+..++.|+.. +|+. ...|..+-..+...+.|+.|+..+++.+- ++ .+....++..|.++..
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l-~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~--P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRI-SPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-IN--PAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHH
Confidence 3344555666666766666543 5432 44566666777777777777777766542 11 1234556666777777
Q ss_pred hhcHHHHHHHHHHhhc-CCcc
Q 019008 190 QKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+++|++|.++|+.|+. .|..
T Consensus 124 ~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC
T ss_pred cCCHHHHHHHHHHHHHhCCCC
Confidence 7777777777777775 6654
No 143
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.18 E-value=0.85 Score=40.31 Aligned_cols=85 Identities=8% Similarity=-0.014 Sum_probs=44.8
Q ss_pred ccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHH
Q 019008 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA 196 (347)
Q Consensus 117 ~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A 196 (347)
....++..+..++.. +|.. ...+..+...+...+.|+.|...+.+.+-..|. ...-+++.|.++...++|++|
T Consensus 106 ~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 106 KNEHARRYLSKATTL-EKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG---CHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp CHHHHHHHHHHHHTT-CTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT---CSHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHhhHHHH
Confidence 344455555555543 3321 223455666666666666666666654332121 112233356666666666666
Q ss_pred HHHHHHhhc-CCc
Q 019008 197 LELLHNVVT-APM 208 (347)
Q Consensus 197 ~~~l~~ai~-~P~ 208 (347)
.++|+.++. .|.
T Consensus 179 ~~~~~~al~~~~~ 191 (330)
T 3hym_B 179 ERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCC
Confidence 666666665 454
No 144
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=91.04 E-value=8.4 Score=34.58 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=72.1
Q ss_pred cccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHhh
Q 019008 116 EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 116 ~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~~ 190 (347)
+.+..++..++.|+.-....+. .....+..+...+...+.|+.|+..+++.+--.+ .......+++-.|.++..+
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 7777889999999887654332 2345667788999999999999999998654221 1223456788889999999
Q ss_pred hcHHHHHHHHHHhhcCCcc
Q 019008 191 KRFRKALELLHNVVTAPMS 209 (347)
Q Consensus 191 k~y~~A~~~l~~ai~~P~~ 209 (347)
++|++|..+|+.++..|..
T Consensus 209 g~~~~A~~~~~~al~~p~~ 227 (307)
T 2ifu_A 209 ADYVAAQKCVRESYSIPGF 227 (307)
T ss_dssp TCHHHHHHHHHHHTTSTTS
T ss_pred CCHHHHHHHHHHHhCCCCC
Confidence 9999999999999966654
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.99 E-value=0.25 Score=36.21 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 143 H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
+..+...+...+.|+.|...+++.+-.-+ .....++..|.++..+++|++|..+|+.++. .|.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 35567788899999999999988654222 1245677889999999999999999999997 665
No 146
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.81 E-value=0.79 Score=42.31 Aligned_cols=87 Identities=8% Similarity=-0.014 Sum_probs=44.0
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~ 194 (347)
.+....++..++.++.. +|.. ...+..+...+...+.|+.|...+++.+---| +....++..|.++...++|+
T Consensus 46 ~~~~~~a~~~~~~a~~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQ-NPLL---AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSS
T ss_pred cCCHHHHHHHHHHHHhc-CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHH
Confidence 33344444444444433 3321 33455555666666666666666655432111 12333445566666666666
Q ss_pred HHHHHHHHhhc-CCc
Q 019008 195 KALELLHNVVT-APM 208 (347)
Q Consensus 195 ~A~~~l~~ai~-~P~ 208 (347)
+|...|+.++. .|.
T Consensus 119 ~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 119 GAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 66666666664 554
No 147
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=90.79 E-value=0.56 Score=38.63 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 177 l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
...++.-|.++..+++|++|...|+.++. .|.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 45566677888888888888888888886 664
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.74 E-value=0.67 Score=34.62 Aligned_cols=67 Identities=7% Similarity=-0.002 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+...+...+.|+.|...+++.+-.-+ +....++..|.++...++|++|..+|+.++. .|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 34556777889999999999999988654322 2356778889999999999999999999997 6754
No 149
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.36 E-value=0.88 Score=41.22 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=49.8
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...+....++..+..++.. +|+. ...+..+...+...+.|+.|...+++.+-.-| +....++..|.++..+++
T Consensus 228 ~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSV-RPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQP---GYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCC
Confidence 3444455555556555544 3322 23455666666666777777666666432111 223455666666777777
Q ss_pred HHHHHHHHHHhhc-CCc
Q 019008 193 FRKALELLHNVVT-APM 208 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~ 208 (347)
|++|..+|+.++. .|.
T Consensus 301 ~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 301 HREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 7777777766665 443
No 150
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.26 E-value=0.78 Score=42.35 Aligned_cols=92 Identities=9% Similarity=-0.128 Sum_probs=63.2
Q ss_pred hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (347)
Q Consensus 111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~ 190 (347)
.....+....++..++.++.. +|+. ...+..+...+...+.++.|...+++.+-.-|. ....++..|.++...
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIEL-QPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT---HADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-CSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHc
Confidence 334456666677888777764 4432 335677788888888888888888876532221 233455678888888
Q ss_pred hcHHHHHHHHHHhhc-CCcc
Q 019008 191 KRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~P~~ 209 (347)
++|++|..+|+.++. .|..
T Consensus 319 g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCc
Confidence 888888888888886 5654
No 151
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.02 E-value=0.82 Score=47.78 Aligned_cols=95 Identities=7% Similarity=-0.004 Sum_probs=72.2
Q ss_pred HHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (347)
Q Consensus 107 ~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i 186 (347)
.++..+...++...|+..++.|+.. +|+. ...|..+-..+...+.++.|+..+++.+- ++ .+....++..|.+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l-~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-l~--P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQI-NPAF---ADAHSNLASIHKDSGNIPEAIASYRTALK-LK--PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--SCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCChHHHhhhhhH
Confidence 3555566777777788888888754 6643 55778888999999999999999888653 22 1345567778899
Q ss_pred HHhhhcHHHHHHHHHHhhc-CCc
Q 019008 187 FIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
+..+++|++|.+.|+.++. .|.
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999987 554
No 152
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.00 E-value=0.97 Score=44.75 Aligned_cols=94 Identities=4% Similarity=-0.231 Sum_probs=50.5
Q ss_pred HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~ 187 (347)
++......++...|+..++.|+.. +|+. ...+..+...+...+.|+.|...+++.+-.-| +....++..|.++
T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 63 LGRVRWTQQRHAEAAVLLQQASDA-APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence 333344455555566666665544 3322 33455566666666666666666665432111 1233445556666
Q ss_pred Hhh---hcHHHHHHHHHHhhc-CCc
Q 019008 188 IGQ---KRFRKALELLHNVVT-APM 208 (347)
Q Consensus 188 ~~~---k~y~~A~~~l~~ai~-~P~ 208 (347)
..+ +++++|.+.|+.++. .|.
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHhhccccHHHHHHHHHHHHhcCCc
Confidence 666 666666666666665 444
No 153
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=89.79 E-value=3.5 Score=37.67 Aligned_cols=94 Identities=10% Similarity=-0.072 Sum_probs=69.6
Q ss_pred HhhhcccccchHHHHHHHHhhCCCC----CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--chhhHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSST----EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGM 185 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~----~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~--~~~~l~Y~yy~G~ 185 (347)
....+....++..++.++......+ ......+..+...+...+.++.|...+.+.+-..+. +......++..|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 3345666678888888877664322 224556677888999999999999999875432221 2235566778899
Q ss_pred HHHhhhcHHHHHHHHHHhhc
Q 019008 186 IFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 186 i~~~~k~y~~A~~~l~~ai~ 205 (347)
++..+++|++|..+++.++.
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999986
No 154
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=89.68 E-value=3.3 Score=37.23 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=95.0
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh---h
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---Q 190 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~---~ 190 (347)
..+....+...++.|+. .+|... +.++..+...+...+.++.|..++++.+-.-|.. +..|.|...+. +
T Consensus 111 ~~~~~~~A~~~~~~al~-~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA-IEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYCS 182 (308)
T ss_dssp HTTCHHHHHHHHHHHHT-SSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHh-ccccCc--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHc
Confidence 44556667888888876 455432 3377888899999999999999999876432222 22233455443 7
Q ss_pred hcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh-------cchhHHHHHHH
Q 019008 191 KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN-------FSQPYMELVNT 262 (347)
Q Consensus 191 k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~-------~~~pY~~la~a 262 (347)
+++++|...|+.++. .|.. .+++..++-. +...|+.. . .-....+..+. ...-+..++..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~-~~~~g~~~-~----A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDI------PEYVLAYIDY-LSHLNEDN-N----TRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTC------HHHHHHHHHH-HHTTCCHH-H----HHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHH-HHHCCCHH-H----HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 999999999999997 7763 2233333322 23345543 1 11222233221 11123344443
Q ss_pred H-hcCChHHHHHHHHhccccccccccc
Q 019008 263 Y-NTGKIVELETYVQTNREKFESDNNL 288 (347)
Q Consensus 263 ~-~~g~~~~~~~~~~~~~~~f~~D~n~ 288 (347)
. ..|+.+....+.++..+.+.+|...
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHcCCHHHHHHHHHHHHHHccccccc
Confidence 3 4688888888888888888876544
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.63 E-value=0.38 Score=36.82 Aligned_cols=57 Identities=21% Similarity=0.089 Sum_probs=42.1
Q ss_pred cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 153 ~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+.|+.|.+.+.+.+-.-+...+....++..|.++..+++|++|..+|+.++. .|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 46778888888876542111235678889999999999999999999999997 7875
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.58 E-value=1.7 Score=36.79 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=72.4
Q ss_pred hhcccccchHHHHHHHHhhCCCC---C--ch----hhHHHHHHHHHHhcCCchhhhhhhcccccc------cCCchhhHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSST---E--HL----TTLHPEFLQLCLLAKCYKAGLSVLEDDIYE------INLPRDFFL 178 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~---~--~l----T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~------i~~~~~~l~ 178 (347)
..+....++...+.|+. ++|+. . .. ...|...-..+..-+.|+.|+...++.+-- ++ + +...
T Consensus 23 ~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~ 99 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGK 99 (159)
T ss_dssp HHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHH
T ss_pred HCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHH
Confidence 44555557777777764 45541 0 11 226777778888899999999999887642 13 2 3445
Q ss_pred HH----HHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHH
Q 019008 179 YC----YYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (347)
Q Consensus 179 Y~----yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~i 223 (347)
-+ |-.|.++..+++|++|..+|+.++. .|....-.--++..|+.+
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 55 8999999999999999999999997 787432222233444443
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.58 E-value=0.55 Score=43.55 Aligned_cols=94 Identities=11% Similarity=-0.084 Sum_probs=63.1
Q ss_pred HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008 108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~ 187 (347)
+...+.+.+....+...+...+.. .+... .+-.+..+|++.+.|+.|+..+.+.+. .+.+.....-+|+.|+++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHHH
Confidence 444444555555555554433221 23333 445556799999999999999986543 221222244688999999
Q ss_pred HhhhcHHHHHHHHHHhhcCC
Q 019008 188 IGQKRFRKALELLHNVVTAP 207 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~~P 207 (347)
..++++++|..+|+.++.-|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTST
T ss_pred HHCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999655
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=89.54 E-value=0.88 Score=33.61 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...+..+...+...+.|+.|...+++.+-.-+ +....++..|.++...++|++|..+|+.++. .|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 34556778899999999999999988654222 2245677789999999999999999999997 6654
No 159
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=89.32 E-value=2.3 Score=40.14 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=64.8
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCc-hhhHHHHHHHHHHHHhhhcHHHHHHH
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP-RDFFLYCYYGGMIFIGQKRFRKALEL 199 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~-~~~l~Y~yy~G~i~~~~k~y~~A~~~ 199 (347)
++..+..|+.. +|.. ...+..+-..+...+.|+.|...+.+.+---+.+ .....|+.||+......|++++|.++
T Consensus 319 A~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 319 AVAHLKKADEA-NDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHH-CTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhhc-CCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44455555443 4432 2234667889999999999999998865322222 22345677888888889999999999
Q ss_pred HHHhhc-CCccchhHHHHHHHHHH
Q 019008 200 LHNVVT-APMSSINAIAVEAYKKY 222 (347)
Q Consensus 200 l~~ai~-~P~~~~s~i~vea~Kk~ 222 (347)
|+.++. .|.+....-..++.+++
T Consensus 395 y~kal~i~~~~~~~~~~~~~l~~~ 418 (472)
T 4g1t_A 395 FIEGVKINQKSREKEKMKDKLQKI 418 (472)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHH
Confidence 999998 66653333344444443
No 160
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.79 E-value=0.99 Score=39.82 Aligned_cols=89 Identities=7% Similarity=-0.125 Sum_probs=66.7
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...++..++.++.. +|+. ...+..+...+...+.++.|...+++.+-.-| +....++..|.++...++|
T Consensus 33 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQA-APER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HhccHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCCH
Confidence 344555577777777665 4432 44566788999999999999999988654222 2355677889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|...|+.++. .|..
T Consensus 106 ~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 999999999997 6653
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.56 E-value=1.9 Score=33.85 Aligned_cols=89 Identities=15% Similarity=-0.030 Sum_probs=64.2
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
....+....++..+..++.. +|.. ...+..+...+...+.|+.|...+++.+-.-| ........+-.|.++..++
T Consensus 57 ~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~ 131 (166)
T 1a17_A 57 YLRTECYGYALGDATRAIEL-DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQK 131 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 33456666788888888766 4432 44667788899999999999999998654323 2223344455666788999
Q ss_pred cHHHHHHHHHHhhc
Q 019008 192 RFRKALELLHNVVT 205 (347)
Q Consensus 192 ~y~~A~~~l~~ai~ 205 (347)
+|++|...++.+..
T Consensus 132 ~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 132 AFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHH
Confidence 99999999988764
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.28 E-value=2.7 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 176 ~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
....+|..|.++..+++|++|..+|+.++. .|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 345678889999999999999999999997 7764
No 163
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=88.22 E-value=1.3 Score=41.93 Aligned_cols=89 Identities=8% Similarity=-0.057 Sum_probs=70.6
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k 191 (347)
....+....|+..+..++.. +|+ ...+..+...+...+.|+.|...+++.+-.-| +....++..|.++..++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALEL-KED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHhc-Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHh
Confidence 34556677788888888776 453 55778889999999999999999998654222 23467788999999999
Q ss_pred cHHHHHHHHHHhhc-CCc
Q 019008 192 RFRKALELLHNVVT-APM 208 (347)
Q Consensus 192 ~y~~A~~~l~~ai~-~P~ 208 (347)
+|++|...|+.++. .|.
T Consensus 88 ~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp CHHHHHHHHHHHHHSSSC
T ss_pred hHHHHHHHHHHHHhcCCC
Confidence 99999999999997 553
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.44 E-value=0.99 Score=38.16 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=40.6
Q ss_pred chhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-----------cHHHHHHHHHHhhc-CCccchh
Q 019008 156 YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-----------RFRKALELLHNVVT-APMSSIN 212 (347)
Q Consensus 156 y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-----------~y~~A~~~l~~ai~-~P~~~~s 212 (347)
++.|...+++.|- +++ +...-+|..|.+|..++ +|++|..+|+.|+. -|.+...
T Consensus 62 ~~eAi~~le~AL~-ldP--~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 62 IQEAITKFEEALL-IDP--KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHH-hCc--CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 6678888877653 221 24556788999998774 99999999999998 8876433
No 165
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.72 E-value=1.9 Score=32.66 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=46.7
Q ss_pred HHHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 146 FLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 146 ll~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+-+.++..+.|..|..-+...+-..+ ........+++-|.++..++++++|..+++.++. .|.+
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44677777777777777766543221 1123455667889999999999999999999997 8875
No 166
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=86.50 E-value=5.3 Score=35.73 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 019008 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHN 202 (347)
Q Consensus 123 ~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ 202 (347)
..+...+.++.|+. ...+..+...++..+.++.|...+.+.+-.-| +....++..|.++..++++++|...|+.
T Consensus 103 ~~l~~~l~~~lp~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 103 EAIRALLDXVLPRE---EELXAQQAMQLMQESNYTDALPLLXDAWQLSN---QNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHSCCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCc---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666666766643 34567788899999999999999988654222 2356788889999999999999999999
Q ss_pred hhc-CCc
Q 019008 203 VVT-APM 208 (347)
Q Consensus 203 ai~-~P~ 208 (347)
++. .|.
T Consensus 177 ~~~~~p~ 183 (287)
T 3qou_A 177 IPLQDQD 183 (287)
T ss_dssp SCGGGCS
T ss_pred Cchhhcc
Confidence 987 673
No 167
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.29 E-value=1.4 Score=36.02 Aligned_cols=80 Identities=6% Similarity=-0.213 Sum_probs=60.5
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l 200 (347)
++..++.|+.. +|+. ...|..+...+...+.++.|...+.+-+-.-|.+ ....-++..|.++..++++++|...|
T Consensus 93 a~~~~~~al~~-~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQELAA-NPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGA-QDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-TTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 57778887754 6643 5677889999999999999999998765422222 12234556689999999999999999
Q ss_pred HHhhc
Q 019008 201 HNVVT 205 (347)
Q Consensus 201 ~~ai~ 205 (347)
+.++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.22 E-value=1.5 Score=36.53 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCch---h----------hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---D----------FFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~---~----------~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P 207 (347)
.+..+-..+...+.|+.|...+++.+--.+... . ....++..|.++..+++|++|..+|+.++. .|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 345567788999999999999988654322211 0 136778899999999999999999999997 67
Q ss_pred cc
Q 019008 208 MS 209 (347)
Q Consensus 208 ~~ 209 (347)
..
T Consensus 120 ~~ 121 (198)
T 2fbn_A 120 NN 121 (198)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=86.08 E-value=1.1 Score=36.08 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCchhhhhhhccccccc--------CC-------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDDIYEI--------NL-------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i--------~~-------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P 207 (347)
...-..+...+.|+.|+..+.+.+--. +. .......++..|.++..+++|++|...++.++. -|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 444566777888888888777755421 10 223456788899999999999999999999998 77
Q ss_pred cc
Q 019008 208 MS 209 (347)
Q Consensus 208 ~~ 209 (347)
.+
T Consensus 95 ~~ 96 (162)
T 3rkv_A 95 TN 96 (162)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 170
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=85.50 E-value=3.9 Score=38.98 Aligned_cols=99 Identities=8% Similarity=-0.063 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008 98 PEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF 177 (347)
Q Consensus 98 ~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l 177 (347)
+..+..+... ....++...|+..++.++.. +|+. ...+..+...+...+.|+.|+..+++.+---| +..
T Consensus 25 a~~~~~~g~~----~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNH----FFTAKNFNEAIKYYQYAIEL-DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKP---DHS 93 (537)
T ss_dssp HHHHHHHHHH----HHHTTCCC-CHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCH
T ss_pred HHHHHHHHHH----HHHhccHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chH
Confidence 3444444443 33556777799999988875 5543 46778889999999999999999998654222 345
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
..++..|.++..+++|++|...|+ ++. .|.
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence 678889999999999999999997 664 665
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.44 E-value=1.3 Score=39.75 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+..+...+...+.|+.|...+++.+-.-| +...+++..|.++..+++|++|...|+.++. .|.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 445667888999999999999998765322 2467888999999999999999999999997 7764
No 172
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.58 E-value=3.3 Score=45.33 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
+..-..+++.|+..+.|+.|..++. .. + .+...+ |..|+++...++|++|.++|+.|-.
T Consensus 812 ~~~~~~l~~~l~~~~~~~~~~~l~~--~~--~-~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 812 NDLVTELVEKLFLFKQYNACMQLIG--WL--N-SDPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp SCHHHHHHHHHHHHSCTTHHHHHHH--HS--C-CCHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhhhHHHHHHHhh--hc--c-CCcHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 4455678899999999999887653 11 1 122223 7899999999999999999999864
No 173
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=84.57 E-value=25 Score=33.91 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=63.2
Q ss_pred cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhh-HHHHHHHHHHHHhhhcHHHHHH
Q 019008 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF-FLYCYYGGMIFIGQKRFRKALE 198 (347)
Q Consensus 120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~-l~Y~yy~G~i~~~~k~y~~A~~ 198 (347)
.++..+..|+..++|.. ..+|..+.......+.++.|..++++.+- ++ +.+. ..|.-| |.+...++++++|..
T Consensus 304 ~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~-~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQY-MKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SS-SSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-cc-ccCchHHHHHH-HHHHHHhcCHHHHHH
Confidence 57888999987667754 56788888999999999999999998654 33 2222 233333 556678999999999
Q ss_pred HHHHhhcCCcc
Q 019008 199 LLHNVVTAPMS 209 (347)
Q Consensus 199 ~l~~ai~~P~~ 209 (347)
.|+.|+..|..
T Consensus 378 ~~~~Al~~~~~ 388 (530)
T 2ooe_A 378 IFKKAREDART 388 (530)
T ss_dssp HHHHHHTCTTC
T ss_pred HHHHHHhccCC
Confidence 99999986543
No 174
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.32 E-value=4 Score=40.49 Aligned_cols=91 Identities=7% Similarity=-0.061 Sum_probs=67.1
Q ss_pred hhcccccchHHHHHHHHhhCC----C-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQS----S-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYG 183 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~----~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~ 183 (347)
..+....|+..++.++..... + +.+++ ..+.+...|...+.|+.|+++..+.+-- . +..-+.+.-+.-.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555667777777665443 2 23334 4467888999999999999998875421 1 2356788888999
Q ss_pred HHHHHhhhcHHHHHHHHHHhhc
Q 019008 184 GMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 184 G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
|.+|..+++|++|..+|+.|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999984
No 175
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.50 E-value=1.8 Score=35.22 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=46.6
Q ss_pred HHHHHHhcCCchh---hhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 146 FLQLCLLAKCYKA---GLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 146 ll~l~l~~~~y~~---Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+....+++++... +..+|..-. .-..+..--.|.||.|.-+..+|+|++|..+++.++. -|.+
T Consensus 41 yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 41 YAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 4445555666555 666666532 2222446678999999999999999999999999997 8875
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.42 E-value=10 Score=35.71 Aligned_cols=67 Identities=6% Similarity=0.020 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccC-------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEIN-------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~-------------~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P 207 (347)
.+..+-..+...+.|+.|+..+.+.+-..+ ........++..|.++..+++|++|..+++.|+. .|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 356677888999999999999888764111 1234567788889999999999999999999997 56
Q ss_pred c
Q 019008 208 M 208 (347)
Q Consensus 208 ~ 208 (347)
.
T Consensus 305 ~ 305 (370)
T 1ihg_A 305 S 305 (370)
T ss_dssp T
T ss_pred h
Confidence 4
No 177
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=83.20 E-value=3.9 Score=35.56 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=9.1
Q ss_pred ChhhHHHHHHHHhhcc
Q 019008 326 SSKEAEMHVLQMVTFE 341 (347)
Q Consensus 326 s~~eaE~~v~~mI~~G 341 (347)
+.++|.....++++-|
T Consensus 237 ~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLG 252 (273)
T ss_dssp CSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4556666666655544
No 178
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=82.77 E-value=10 Score=36.32 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.-.|..+.-..+..+.++.|...+++.+- .+ + .. ..+...|.++...|+|++|.+.|++|++ -|.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln-~-s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGID-LE-M-SW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-C-CH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC-C-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 44555666667778999999999998764 23 2 23 4558889999999999999999999998 786
No 179
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.72 E-value=3.2 Score=30.94 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhh---cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys---~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...|.++-+... +++..+||++++++ ...+...+.+|.++|.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 445666666777 89999999999998 678999999999999874
No 180
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=82.58 E-value=2.4 Score=39.84 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=49.5
Q ss_pred CChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhh----cccHHHHHHHcCCCChhhHHHHHHH
Q 019008 266 GKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYL----TLSLQDIANTVQLNSSKEAEMHVLQ 336 (347)
Q Consensus 266 g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys----~IsL~dIa~~l~l~s~~eaE~~v~~ 336 (347)
||..+|-+.+......+.. --++..-+..+++..++.++++|. +++++++++.++.+|++|++.++..
T Consensus 177 gNY~rFFrL~~~~~~pyL~---aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLM---GFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHH---HHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 5666666555532111111 134555577899999999999995 8999999999999999999988753
No 181
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.52 E-value=4.5 Score=39.83 Aligned_cols=89 Identities=6% Similarity=-0.039 Sum_probs=70.0
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y 193 (347)
..++...|+..++.|+.. +|+. ...+..+...+...+.|+.|...+++.+---| +....++..|.++..+++|
T Consensus 35 ~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 35 GMGDTTAGEMAVQRGLAL-HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---EHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHTCHHHHHHHHHHHHTT-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCH
Confidence 445666688888887765 5543 45678889999999999999999998654222 2356778889999999999
Q ss_pred HHHHHHHHHhhc-CCcc
Q 019008 194 RKALELLHNVVT-APMS 209 (347)
Q Consensus 194 ~~A~~~l~~ai~-~P~~ 209 (347)
++|.++|+.++. .|..
T Consensus 108 ~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 999999999997 7864
No 182
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=81.99 E-value=19 Score=32.49 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=62.3
Q ss_pred hhcccccchHHHHHHHHhhCCCCCch-hhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHh
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHL-TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~l-T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~ 189 (347)
..+.+..+...++.++.. .+.+... ...+..+.+.++..+.++.|...+++.+-..+ ...+..+.++..|.++..
T Consensus 227 ~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 445555566666665432 2222122 23456778899999999999999887543211 123455677888999999
Q ss_pred hhcHHHHHHHHHHhhc
Q 019008 190 QKRFRKALELLHNVVT 205 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~ 205 (347)
++++++|..+|+.++.
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 9999999999999996
No 183
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=81.51 E-value=2 Score=41.00 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=83.3
Q ss_pred hhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCC-chhhhhhhcccccccCC
Q 019008 94 IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKC-YKAGLSVLEDDIYEINL 172 (347)
Q Consensus 94 lr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~-y~~Al~~l~~~i~~i~~ 172 (347)
+.+-|+ +..........+...+....++..+..|+. ++|+. ...+..+-..+...+. |+.|+..+++.+---|
T Consensus 90 i~~~p~-~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P- 163 (382)
T 2h6f_A 90 IIYSDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP- 163 (382)
T ss_dssp ECCCHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-
T ss_pred hhCChh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-
Confidence 445454 455555566677778888889999988774 58754 4566777788888886 9999999999765222
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.....+++.|.++..+++|++|..+|+.++. -|.+
T Consensus 164 --~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 164 --KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp --TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred --CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 3466788899999999999999999999997 8875
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=81.31 E-value=3.4 Score=38.88 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=57.1
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhhHHHHH----HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEF----LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~l----l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~ 189 (347)
..+....++..++.|+. ++|... ..+..+ .++....+.++.|...+.+.+-.-| +....++..|.+|..
T Consensus 187 ~~~~~~~al~~~~~al~-l~p~~~---~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIR-LNPDNQ---YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRR 259 (472)
T ss_dssp HSCCCCCTHHHHHHHHH-HCSSCH---HHHHHHHHHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhh-cCCcch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHH
Confidence 34555667888888875 455432 222222 2334455778889888887543222 234456778999999
Q ss_pred hhcHHHHHHHHHHhhc-CCccc
Q 019008 190 QKRFRKALELLHNVVT-APMSS 210 (347)
Q Consensus 190 ~k~y~~A~~~l~~ai~-~P~~~ 210 (347)
.++|++|...|+.++. .|...
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCH
T ss_pred cCchHHHHHHHHHHHHhCCChH
Confidence 9999999999999997 88753
No 185
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=81.05 E-value=2.4 Score=31.11 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=35.7
Q ss_pred HHHHHHHhhhh---cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 301 RNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 301 ~~I~~L~~~Ys---~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+.|..+-+.-. +++..+||++++++ ...+...+.+|.++|.+.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 45555566666 89999999999998 678999999999999863
No 186
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=80.88 E-value=12 Score=36.30 Aligned_cols=92 Identities=9% Similarity=-0.022 Sum_probs=64.2
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
...++...+...+..|+.. +|.. .+.++..+.+.....+.++.|..++++.+-..+ ...-.|.-.+.+-+...|+
T Consensus 332 ~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAI-EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHS-SSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHHTCC
T ss_pred HhcCCHHHHHHHHHHHhCc-cccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHHcCC
Confidence 3455666677788887764 5532 245788888888889999999999998764322 2223333333344557899
Q ss_pred HHHHHHHHHHhhc-CCcc
Q 019008 193 FRKALELLHNVVT-APMS 209 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~~ 209 (347)
+++|...|+.++. .|.+
T Consensus 407 ~~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHCCCC
Confidence 9999999999997 7754
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=80.35 E-value=2.9 Score=38.58 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCC
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P 207 (347)
+.++..+..+....+.|+.|...++.-++. .+.+. -.|-.|.++...++|++|...|+.++..|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 556777889999999999999999987662 24444 67889999999999999999999888876
No 188
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=79.35 E-value=3.4 Score=42.31 Aligned_cols=30 Identities=10% Similarity=-0.089 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
.++..|.++..+++|++|.++|+.++. .|.
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 445556666666666666666666664 443
No 189
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=79.04 E-value=2.8 Score=40.93 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=64.9
Q ss_pred cccchHHHHHHHHhhC----CC-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHHHHHH
Q 019008 118 PIRGVGPMLTAIRKIQ----SS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMIF 187 (347)
Q Consensus 118 ~~~~i~~L~~Ai~r~~----~~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~G~i~ 187 (347)
...|+..++.++.... |+ +.+++ ..+.+...|...+.|+.|+++..+.+-- . +..-+.+.-+.-.|.+|
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLH-MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3456677777766433 22 23333 4466888999999999999999886431 1 23567888888999999
Q ss_pred HhhhcHHHHHHHHHHhhc
Q 019008 188 IGQKRFRKALELLHNVVT 205 (347)
Q Consensus 188 ~~~k~y~~A~~~l~~ai~ 205 (347)
..+++|++|..+|+.|+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 999999999999999984
No 190
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=79.04 E-value=6.5 Score=34.08 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=62.6
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHh----cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh-
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~----~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~- 189 (347)
.++...++..++.|+..- -...+..+-..+.. .+.++.|...+.+.+-. ....-++..|.+|..
T Consensus 55 ~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIYHDG 123 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHHHcC
Confidence 566667888888887652 24566777888888 99999999999886542 245567778888888
Q ss_pred ---hhcHHHHHHHHHHhhcC
Q 019008 190 ---QKRFRKALELLHNVVTA 206 (347)
Q Consensus 190 ---~k~y~~A~~~l~~ai~~ 206 (347)
.+++++|.++|+.++..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999973
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=78.83 E-value=1.5 Score=32.06 Aligned_cols=87 Identities=6% Similarity=-0.134 Sum_probs=63.5
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC---chhhHHHHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFI 188 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~---~~~~l~Y~yy~G~i~~ 188 (347)
....++...++..++.|+.. +|.. ...+..+...+...+.|+.|+..+++.+---|. .......++..|.++.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITA-QPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 33556666788888888765 5543 456778889999999999999999987643232 1224667788899999
Q ss_pred hhhcHHHHHHHHHH
Q 019008 189 GQKRFRKALELLHN 202 (347)
Q Consensus 189 ~~k~y~~A~~~l~~ 202 (347)
.++++++|.+.|+.
T Consensus 90 ~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 90 AVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHCCCCCSSSSSS
T ss_pred HHHhHhhhHhHHHH
Confidence 99988888765543
No 192
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=77.96 E-value=4.2 Score=37.49 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCc------------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-C
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~------------~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~ 206 (347)
...+..+-..+...+.|+.|...+.+.+--.|.. ......++..|.++..+++|++|..+|+.++. .
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4466777889999999999999998866433321 12257788899999999999999999999997 7
Q ss_pred Ccc
Q 019008 207 PMS 209 (347)
Q Consensus 207 P~~ 209 (347)
|.+
T Consensus 227 p~~ 229 (336)
T 1p5q_A 227 SNN 229 (336)
T ss_dssp TTC
T ss_pred CCc
Confidence 764
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=77.78 E-value=4.1 Score=39.59 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=62.2
Q ss_pred ccccchHHHHHHHHhhC----CC-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHHHHH
Q 019008 117 APIRGVGPMLTAIRKIQ----SS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMI 186 (347)
Q Consensus 117 ~~~~~i~~L~~Ai~r~~----~~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~G~i 186 (347)
....++...+.++.... ++ +.+++ ....+...|...+.|+.|+++..+.+-- . +...+.+.-++-.|.+
T Consensus 302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~-~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~ 380 (429)
T 3qwp_A 302 KWEQVLAMCQAIISSNSERLPDINIYQLK-VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKL 380 (429)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCTTSHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccCcCCccchHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHH
Confidence 33445666666654422 22 22333 3456778889999999999998875421 1 2356788888899999
Q ss_pred HHhhhcHHHHHHHHHHhhc
Q 019008 187 FIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 187 ~~~~k~y~~A~~~l~~ai~ 205 (347)
|..+++|++|..+|+.|+.
T Consensus 381 ~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 381 QLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999884
No 194
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.21 E-value=4.1 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=29.5
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-..|+.|||+.+++ |+.-|...+..+-+.|.+.
T Consensus 23 ~~psv~EIa~~lgv-S~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 23 APVKTRDIADAAGL-SIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp SCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCcEE
Confidence 56999999999999 5788999999999999874
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.01 E-value=3.1 Score=29.09 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 175 ~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.....++..|.++...++|++|..+|+.++. .|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3567788899999999999999999999997 6653
No 196
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=76.22 E-value=4.7 Score=28.52 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=29.2
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
..+|.+|||++++++ ...+..+|..+.++|.+
T Consensus 24 ~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I 55 (67)
T 2heo_A 24 GPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRV 55 (67)
T ss_dssp SCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcE
Confidence 459999999999999 88999999999999984
No 197
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=75.75 E-value=34 Score=28.61 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=61.7
Q ss_pred ccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHh----cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh---
Q 019008 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG--- 189 (347)
Q Consensus 117 ~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~----~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~--- 189 (347)
++..++..++.|+.. +. ...+..+-.++.. .++++.|...+.+.+-. .++.....-+|..|.+|..
T Consensus 68 ~~~~A~~~~~~A~~~----g~--~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA----GS--KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp CHHHHHHHHHHHHHT----TC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHC----CC--HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCC
Confidence 456688888888643 11 3344556666666 78999999999987642 2121345667778888887
Q ss_pred -hhcHHHHHHHHHHhhcCCcc
Q 019008 190 -QKRFRKALELLHNVVTAPMS 209 (347)
Q Consensus 190 -~k~y~~A~~~l~~ai~~P~~ 209 (347)
.+++++|.++|+.++..|..
T Consensus 141 ~~~d~~~A~~~~~~A~~~~~~ 161 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLSRT 161 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTSCT
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 89999999999999987654
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.63 E-value=8.9 Score=28.64 Aligned_cols=64 Identities=8% Similarity=-0.136 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCC---chhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 142 LHPEFLQLCLLAKC---YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 142 ~H~~ll~l~l~~~~---y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
++..+....+.++. .+.|..++++.+- ++ .+..+=.++.|.++...++|++|...++.++. .|.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQ-LE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33444444443333 6777777777543 22 23455566679999999999999999999996 776
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=71.84 E-value=6.5 Score=38.00 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCc------------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-C
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~------------~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~ 206 (347)
...+..+-..+...+.|+.|...+++.+--.+.. ......++..|.++..+++|++|..+|+.|+. .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3455667788999999999999998865422221 12367788899999999999999999999997 7
Q ss_pred Ccc
Q 019008 207 PMS 209 (347)
Q Consensus 207 P~~ 209 (347)
|.+
T Consensus 348 p~~ 350 (457)
T 1kt0_A 348 SAN 350 (457)
T ss_dssp TTC
T ss_pred Ccc
Confidence 764
No 200
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.43 E-value=6.5 Score=32.26 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
+..--.|.||.+.-+..+|+|++|..+.+.++. -|.+
T Consensus 74 ~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 74 ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344678999999999999999999999999997 8875
No 201
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=71.21 E-value=6.1 Score=28.66 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=29.7
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-..++.+|||+.++++ ...+...+..+.++|.+.
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 3569999999999997 788999999999999874
No 202
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=69.84 E-value=6.1 Score=29.90 Aligned_cols=42 Identities=5% Similarity=0.063 Sum_probs=36.3
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.|.++-+..-+++++|+|+.++++ +.-++..+..+.+.|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 466666778899999999999988 789999999999999763
No 203
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.83 E-value=27 Score=33.59 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCC
Q 019008 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (347)
Q Consensus 141 ~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P 207 (347)
.+-.-+..+++..+.|..|++++.+-.- .++.....++-+-.--.+|..++++.+|...++.|.+.+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3445788999999999999998876433 334467888999999999999999999999999887644
No 204
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=69.04 E-value=6.7 Score=32.99 Aligned_cols=64 Identities=13% Similarity=-0.052 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCchhhhhhhcccccccCC---------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINL---------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (347)
Q Consensus 143 H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~---------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~ 206 (347)
+...-..+...+.|+.|+...++.+---|. .......++-.|.++..+++|++|..+++.|+..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455677788899888888876542221 0112347888999999999999999999999863
No 205
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=67.97 E-value=5.6 Score=33.86 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCchhhhhhhcc--cccccC----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008 145 EFLQLCLLAKCYKAGLSVLED--DIYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (347)
Q Consensus 145 ~ll~l~l~~~~y~~Al~~l~~--~i~~i~----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai 204 (347)
.=++..+..+.|+.|..+-+. ++.+-+ ++..-.+-++|-|-.+-.+++|.+|...|++|+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 446888999999999988876 332222 255667778888999999999999999999986
No 206
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=67.89 E-value=27 Score=32.42 Aligned_cols=155 Identities=9% Similarity=0.055 Sum_probs=85.5
Q ss_pred HHHhHhhhcccccchHHHHHHHHhhCC-----CCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-chhhHHHHH
Q 019008 108 YKDQVLLLEAPIRGVGPMLTAIRKIQS-----STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCY 181 (347)
Q Consensus 108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~-----~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-~~~~l~Y~y 181 (347)
.++.+...+++-.|...++.. .+.+| ..+.++-+-...+.++...+.|..|..+++.-.-..|. ....+.|-
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln- 219 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN- 219 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-
Confidence 444555677777788877775 55676 24545444333445555555899999998874322232 12233333
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhc-CCcc----chhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhH
Q 019008 182 YGGMIFIGQKRFRKALELLHNVVT-APMS----SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPY 256 (347)
Q Consensus 182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~~----~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY 256 (347)
+++.+++|++|...|+..+. .|.- .+.+---++.--.|.++..+ |+ + +.....+..+. .|=
T Consensus 220 ----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l-gk-~------a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 220 ----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ-GL-D------TEDLTNQLVKL--DHE 285 (310)
T ss_dssp ----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT-TC-T------THHHHHHHHHT--TCC
T ss_pred ----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh-Ch-H------HHHHHHHHHHh--CCC
Confidence 79999999999999997776 4430 00000133444556666554 76 3 12222222211 233
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc
Q 019008 257 MELVNTYNTGKIVELETYVQTNR 279 (347)
Q Consensus 257 ~~la~a~~~g~~~~~~~~~~~~~ 279 (347)
..++.-+... -..|.+.+.++.
T Consensus 286 hp~i~d~~~k-~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 286 HAFIKHHQEI-DAKFDELVRKYD 307 (310)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTCC
T ss_pred ChHHHHHHHH-HHHHHHHHHHhc
Confidence 3444444332 257777777664
No 207
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.67 E-value=8.4 Score=28.38 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 301 ~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..|.++-+..-+++++|+|+.++++ +.-++..+..+.+.|.+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 3566667778899999999999988 889999999999999764
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=67.36 E-value=6.7 Score=29.17 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 177 l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
...++..|.++...++|++|..+|+.++. .|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 45778889999999999999999999997 6754
No 209
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.25 E-value=6.6 Score=29.41 Aligned_cols=31 Identities=3% Similarity=0.167 Sum_probs=28.7
Q ss_pred ccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 313 LSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 313 IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
++..+||+++|++ ...+...+.++-++|.+.
T Consensus 31 ~sa~eLAk~LgiS-k~aVr~~L~~Le~eG~I~ 61 (82)
T 1oyi_A 31 ATAAQLTRQLNME-KREVNKALYDLQRSAMVY 61 (82)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHHTSSE
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 9999999999998 788999999999999874
No 210
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.87 E-value=7.7 Score=32.20 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 175 ~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.-=.|.||.+.-+..+|+|++|..+.+.++. -|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3456899999999999999999999999997 8875
No 211
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=65.79 E-value=4.2 Score=39.75 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=47.2
Q ss_pred HHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008 149 LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (347)
Q Consensus 149 l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~ 209 (347)
.+...+.|+.|...+++.+-.-| +....++..|.++..+++|++|..+|+.++. .|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 45678899999999988654322 3467888899999999999999999999997 6754
No 212
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=62.84 E-value=12 Score=30.40 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=35.0
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY 346 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~ 346 (347)
.|.++-+.-.++|.++||+++|++ ...+-..+.++.+.|.+.-|
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 344443445789999999999997 78899999999999987544
No 213
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=62.11 E-value=1.3e+02 Score=34.14 Aligned_cols=58 Identities=7% Similarity=-0.073 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
..+|..+.+.++..+.|+.|..-+.+. +....++-.|.++...++|++|.++|..|..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 668889999999999999999998775 2355566689999999999999999999995
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=62.11 E-value=11 Score=26.84 Aligned_cols=80 Identities=5% Similarity=-0.108 Sum_probs=55.1
Q ss_pred hhcccccchHHHHHHHHhhCCCCCchhh-HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTT-LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~-~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
..+....++..++.++.. +|.. .. .+..+-..+...+.|+.|...+.+.+---|..... ++ .+.
T Consensus 12 ~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~---------~~~ 76 (99)
T 2kc7_A 12 NQGDIENALQALEEFLQT-EPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL--QA---------RKM 76 (99)
T ss_dssp HHTCHHHHHHHHHHHHHH-CSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--HH---------HHH
T ss_pred HcCCHHHHHHHHHHHHHH-CCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH--HH---------HHH
Confidence 345555678888887765 5533 34 67788899999999999999999876432322221 11 178
Q ss_pred HHHHHHHHHHhhc-CCc
Q 019008 193 FRKALELLHNVVT-APM 208 (347)
Q Consensus 193 y~~A~~~l~~ai~-~P~ 208 (347)
+.+|..+|+.++. .|.
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 8889999888876 554
No 215
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=61.56 E-value=71 Score=36.29 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=45.0
Q ss_pred hhcccccchHHHHHHHHhhCCC-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008 114 LLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (347)
Q Consensus 114 ~~~~~~~~i~~L~~Ai~r~~~~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~ 192 (347)
..+.|..+++.|..+++. |+ -+.=..+-+++++.++++ ........+++.- ..+ ..+ .|.|+..++.
T Consensus 997 ~aglp~EaieLLEKivl~--~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d-~~e-------IA~Iai~lgl 1064 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLD--NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD-APD-------IANIAISNEL 1064 (1630)
T ss_pred hCCCHHHHHHHHHHHHcC--CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc-HHH-------HHHHHHhCCC
Confidence 345566677777777733 33 011233445566666666 2244444444321 111 111 6888888888
Q ss_pred HHHHHHHHHHhh
Q 019008 193 FRKALELLHNVV 204 (347)
Q Consensus 193 y~~A~~~l~~ai 204 (347)
|++|.+.|+.+-
T Consensus 1065 yEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHHHcC
Confidence 888888888874
No 216
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=60.26 E-value=14 Score=30.94 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY 346 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~ 346 (347)
|.++-+.-.++|.++||+++|++ ...+-..+.++.++|.+.-|
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS-~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEee
Confidence 33333445789999999999996 78899999999999987544
No 217
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=60.24 E-value=10 Score=30.75 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=34.7
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL 345 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~ 345 (347)
.|.++-+.-.++|.++||+++|++ ...+...+.++.+.|.+.-
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHcCCcce
Confidence 344444445789999999999996 7889999999999998754
No 218
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=60.12 E-value=25 Score=34.54 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCchhhhhhhccc
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDD 166 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~ 166 (347)
...+..|.+.+.++.|+.+++.-
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M 52 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEA 52 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 55678888999999999988863
No 219
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=59.34 E-value=14 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY 346 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~ 346 (347)
.|.++-+.-.++|.++||+++|++ ...+-..+.++.+.|.+.-|
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEE
Confidence 344444445689999999999997 78899999999999987644
No 220
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.90 E-value=12 Score=30.16 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.|.++-+...++|.++||+++|++ ...+...+.++.+.|.+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 344444455789999999999996 788999999999999875
No 221
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=58.86 E-value=28 Score=27.25 Aligned_cols=75 Identities=8% Similarity=-0.122 Sum_probs=50.7
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHHHHHHHHh----cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----hhc
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKR 192 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~----~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~----~k~ 192 (347)
++..++.|+.. +. ...+..+-.++.. .++++.|...+.+..-. ....=+|..|.+|.. .++
T Consensus 44 A~~~~~~Aa~~----g~--~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 44 LFQYLSKACEL----NS--GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----NDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp HHHHHHHHHHT----TC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHcC----CC--HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHCCCCCCcC
Confidence 45555555554 11 2334555666666 78899999998886531 123345666777776 899
Q ss_pred HHHHHHHHHHhhcC
Q 019008 193 FRKALELLHNVVTA 206 (347)
Q Consensus 193 y~~A~~~l~~ai~~ 206 (347)
+++|.++|+.+...
T Consensus 113 ~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 113 EKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999863
No 222
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=58.74 E-value=28 Score=33.15 Aligned_cols=58 Identities=5% Similarity=-0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHh----cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----hhcHHHHHHHHHHhhc
Q 019008 143 HPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRKALELLHNVVT 205 (347)
Q Consensus 143 H~~ll~l~l~----~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~----~k~y~~A~~~l~~ai~ 205 (347)
+..+-.++.. .++++.|...+.+..- .....-.+..|.+|.. .+++++|.++|+.++.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAE-----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3444444544 4555555555555322 1123444555566654 5666666666666654
No 223
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=57.41 E-value=20 Score=26.18 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 295 ~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+..-.+..|...-.....++.++||+.++++ ...+-..+.+|.+.|.+.
T Consensus 13 l~~~~~~~iL~~L~~~~~~~~~ela~~l~is-~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 13 LGNPVRLGIMIFLLPRRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHSHHHHHHHHHHHHHSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCChHHHHHHHHHHhcCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 3344455555543345689999999999998 677888999999999764
No 224
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=56.76 E-value=14 Score=30.42 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.|.++-+.-.++|.++||+++|++ ...+-..+.++.+.|.+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALS-PSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEe
Confidence 344444445679999999999997 788999999999999875
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=55.28 E-value=22 Score=26.42 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=49.0
Q ss_pred HHHHhHhhhcccccchHHHHHHHHhhCCC---CCchhhHHHHHHHHHHhcCCchhhhhhhccccc
Q 019008 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSS---TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY 168 (347)
Q Consensus 107 ~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~---~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~ 168 (347)
.++..+.+.+....|+.-++.|+.+.++. +.....++..|...+.+.+.++.|+..+++.+-
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34555556677778899999999998654 334677888999999999999999999988654
No 226
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=54.79 E-value=15 Score=29.64 Aligned_cols=41 Identities=5% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|.++-+.-.++|.++||+++|++ ...+...+.++.++|.+.
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 33433445789999999999997 788999999999999875
No 227
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=54.77 E-value=32 Score=28.09 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=42.6
Q ss_pred CccHHHHHHHHhhc-----CCChhcHHHHHHHHHHhHHHHhhhhhhhhhhhhhcCchhhHHHHHHHHHHhhhcc
Q 019008 1 MQSIENLVTQIQGL-----SSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCS 69 (347)
Q Consensus 1 ~~~l~~~~~~i~~~-----~~s~~~~~~L~~~L~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~~~~~~~ 69 (347)
|+.++.|.+..++| +.|+.....|......+...-..-......-+.. -|..+=|+.||+++..+...
T Consensus 1 m~~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k-~~~~~KL~~LYL~DsIvrn~ 73 (145)
T 3d9j_A 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK-CKPEYKVPGLYVIDSIVRQS 73 (145)
T ss_dssp -CHHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH-SCGGGHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeehhhhhHHHHHHh
Confidence 88999999999999 5566677777765544322111111122222333 36668899999999988644
No 228
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=54.67 E-value=15 Score=30.74 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=33.2
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|.++-+.-.++|.++||+++|++ ...+-..+.+|.++|.+.
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS-~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKP-ESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 33333344689999999999998 788899999999999874
No 229
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=54.42 E-value=15 Score=27.14 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+..|..+-+.--..+..+||+.++++....|...+.+|-++|.+.
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 455666666677889999999999995449999999999999763
No 230
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=52.89 E-value=11 Score=34.64 Aligned_cols=68 Identities=13% Similarity=-0.045 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCchhhhhhhcccccccCCch---------h-----hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-C
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---------D-----FFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~---------~-----~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~ 206 (347)
.+..+-..+...+.|+.|...+.+.+-..+... + ....++..|.++..+++|++|..+|+.++. .
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355666788889999999998888654322110 0 013677889999999999999999999997 7
Q ss_pred Ccc
Q 019008 207 PMS 209 (347)
Q Consensus 207 P~~ 209 (347)
|.+
T Consensus 261 p~~ 263 (338)
T 2if4_A 261 EKN 263 (338)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 231
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=52.80 E-value=33 Score=31.85 Aligned_cols=112 Identities=8% Similarity=0.060 Sum_probs=74.0
Q ss_pred HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHHH
Q 019008 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIF 187 (347)
Q Consensus 112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i~ 187 (347)
....+++..|+..+...+-. +|+.. -.......+++++.-+..+.|.+.+.+-. ..++ ..+-.....-.|.|.
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~-~~~~~-~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~~~d~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDN-DEAEG-TTELLLLAIEVALLNNNVSTASTIFDNYT-NAIEDTVSGDNEMILNLAESYIK 186 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTS-SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcc-CCCcC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCccccccchHHHHHHHHHHHH
Confidence 33456666677777665332 22222 35567899999999999999999997621 1121 246677777778888
Q ss_pred Hhhh--cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008 188 IGQK--RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234 (347)
Q Consensus 188 ~~~k--~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~ 234 (347)
+..+ ++++|+..|+.... .|....+.. ++.+.+..|+++
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~p~~~~~~l--------Lln~~~~~g~~~ 228 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTFPTWKTQLG--------LLNLHLQQRNIA 228 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTSCSHHHHHH--------HHHHHHHHTCHH
T ss_pred HHhCCccHHHHHHHHHHHHHhCCCcccHHH--------HHHHHHHcCCHH
Confidence 8877 99999999999886 453111111 111566778888
No 232
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=52.57 E-value=21 Score=34.21 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 297 ~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..-+..|.++-.....+|-+|||++++|+ ..-+-.+|.+|+++|.+.
T Consensus 38 ~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 38 QINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 34455667777778899999999999998 788889999999999764
No 233
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=52.48 E-value=18 Score=29.19 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|..+-..-.++|.++||+++|++ ...+-..+.++.+.|.+.
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 33333445789999999999997 788999999999999874
No 234
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=51.66 E-value=19 Score=34.23 Aligned_cols=47 Identities=17% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 297 ~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..-+..|.++-.....+|-+|||++++|+ ..-+-.+|.+|+++|.+.
T Consensus 15 ~~n~~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HhHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEE
Confidence 34555677777778899999999999998 788889999999999864
No 235
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=51.38 E-value=32 Score=28.78 Aligned_cols=80 Identities=10% Similarity=-0.042 Sum_probs=55.1
Q ss_pred hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcC----CchhhhhhhcccccccCCchhhHHHHHHHHHHHHh-
Q 019008 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK----CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (347)
Q Consensus 115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~----~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~- 189 (347)
.++...++..++.|+..=+ ...+..+-.++.. + +++.|...+.+..-. ....-+|..|.+|..
T Consensus 31 ~~~~~~A~~~~~~a~~~g~------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQGD------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GSKSGEIVLARVLVNR 98 (212)
T ss_dssp HTCHHHHHHHHHHHHHTTC------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcC
Confidence 3456668888888876521 2344555556665 6 899999998886431 223445566777765
Q ss_pred ---hhcHHHHHHHHHHhhcC
Q 019008 190 ---QKRFRKALELLHNVVTA 206 (347)
Q Consensus 190 ---~k~y~~A~~~l~~ai~~ 206 (347)
.+++++|.++|+.++..
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSS
T ss_pred CCCccCHHHHHHHHHHHHHc
Confidence 89999999999999973
No 236
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.22 E-value=38 Score=33.23 Aligned_cols=166 Identities=11% Similarity=0.137 Sum_probs=84.3
Q ss_pred hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCC---------chhhhhhhccccc-ccCCchhhHHHHHH
Q 019008 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKC---------YKAGLSVLEDDIY-EINLPRDFFLYCYY 182 (347)
Q Consensus 113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~---------y~~Al~~l~~~i~-~i~~~~~~l~Y~yy 182 (347)
.+.+....|+..+.....+ .-.++ ....+.++..|..++. .+.|..+++.-.- .+. + +... |
T Consensus 37 ~k~G~~~~A~~lf~~M~~~-Gv~pd--~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-P-d~~t---y 108 (501)
T 4g26_A 37 SKKGDVLEALRLYDEARRN-GVQLS--QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-P-NEAT---F 108 (501)
T ss_dssp TTSCCHHHHHHHHHHHHHH-TCCCC--HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-C-CHHH---H
T ss_pred HhCCCHHHHHHHHHHHHHc-CCCCC--HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-C-CHHH---H
Confidence 3445555566665554443 22233 2345777888877665 3456666654211 111 1 1222 2
Q ss_pred HHH--HHHhhhcHHHHHHHHHHhhc---CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHH
Q 019008 183 GGM--IFIGQKRFRKALELLHNVVT---APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYM 257 (347)
Q Consensus 183 ~G~--i~~~~k~y~~A~~~l~~ai~---~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~ 257 (347)
..+ .|+..+++++|.+.|+.... .|....-..++.+| ...|++- ..-+.-.....+.++....-|.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~--------~~~g~~~-~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF--------CRKGDAD-KAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH--------HHTTCHH-HHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH--------HHCCCHH-HHHHHHHHHHhcCCCCCHHHHH
Confidence 333 35678899999999998774 35432223333333 2223322 1000000001111112335688
Q ss_pred HHHHHH-hcCChHHHHHHHHhccc--cccccccccHHHHHH
Q 019008 258 ELVNTY-NTGKIVELETYVQTNRE--KFESDNNLGLVKQVV 295 (347)
Q Consensus 258 ~la~a~-~~g~~~~~~~~~~~~~~--~f~~D~n~gLV~~~~ 295 (347)
.|.+++ +.|+.++..+++++.++ .-....|+..+....
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 888887 56888888888887544 233444555555443
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=50.51 E-value=21 Score=34.41 Aligned_cols=57 Identities=9% Similarity=-0.101 Sum_probs=43.8
Q ss_pred HHHHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008 148 QLCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (347)
Q Consensus 148 ~l~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai 204 (347)
..+-..+.|+.|+++..+..-. + +..-+++.-+.-.|.+|..+++|++|..+++.++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4455678899998887764321 1 2255788888899999999999999999998886
No 238
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=50.21 E-value=47 Score=30.46 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=54.6
Q ss_pred HHHHHHhcCCch-hhhhhhcccccccCCchhhHHHHHHHHHHHHhhh--cHHHHHHHHHHhhc-CCccchhHHHHHHHHH
Q 019008 146 FLQLCLLAKCYK-AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK--RFRKALELLHNVVT-APMSSINAIAVEAYKK 221 (347)
Q Consensus 146 ll~l~l~~~~y~-~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k--~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk 221 (347)
.++.....+.|+ .|+...++-+.- +.++..-.+|.|.+...++ ++++|+++++.++. .|.+...- -+++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW----~~R~ 110 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW----NYRQ 110 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH----HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH----HHHH
Confidence 345555666664 577777765432 2345667788999999998 99999999999997 88753322 4788
Q ss_pred HHHHHHHh
Q 019008 222 YILVSLIH 229 (347)
Q Consensus 222 ~iLv~LL~ 229 (347)
|+|-.++.
T Consensus 111 ~iL~~~~~ 118 (306)
T 3dra_A 111 LIIGQIME 118 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88866553
No 239
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=50.00 E-value=14 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=32.3
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY 346 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~ 346 (347)
.=++..+.|+++.+.=..+.++..+|-+||.+|.+..|
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leyw 55 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYW 55 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEE
Confidence 45678889999988555699999999999999998766
No 240
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=49.03 E-value=32 Score=25.23 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=30.0
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++..+||+.++++ ...+-..+.++.+.|.+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 4579999999999998 788899999999999864
No 241
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=48.91 E-value=22 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+..|...-..-..++..|||+.++++ ...+-..+..+.+.|.+.
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGLS-ASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 34444433333468999999999997 778889999999988764
No 242
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=48.52 E-value=12 Score=36.31 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=40.8
Q ss_pred cCCchhhhhhhccccc--c--c-CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008 153 AKCYKAGLSVLEDDIY--E--I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (347)
Q Consensus 153 ~~~y~~Al~~l~~~i~--~--i-~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai 204 (347)
.+.|+.|++++.+..- . + +..-+++.-+.-.|.+|..+++|++|..+++.++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3568889888876432 1 1 2355788888999999999999999999999986
No 243
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=47.66 E-value=15 Score=28.93 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=51.4
Q ss_pred ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----hhcHH
Q 019008 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFR 194 (347)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~----~k~y~ 194 (347)
..++..++.|+..=++.. . +-.++..-+.++.|...+.+..-. ....=+|..|.+|.. .++++
T Consensus 12 ~~A~~~~~~aa~~g~~~a-----~---lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFG-----C---LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHTTCTTH-----H---HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHHHHHHHHHcCCCHhh-----h---HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346677777776644321 1 455666667777788888876431 234455667777776 89999
Q ss_pred HHHHHHHHhhcC
Q 019008 195 KALELLHNVVTA 206 (347)
Q Consensus 195 ~A~~~l~~ai~~ 206 (347)
+|.++|+.+...
T Consensus 79 ~A~~~~~~Aa~~ 90 (138)
T 1klx_A 79 KAAQYYSKACGL 90 (138)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999999999864
No 244
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=47.47 E-value=31 Score=27.22 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=30.4
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++|.++||+++|++ ...+-..+.++.++|.+.
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEe
Confidence 34679999999999996 788889999999999875
No 245
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.07 E-value=12 Score=30.38 Aligned_cols=34 Identities=3% Similarity=0.080 Sum_probs=30.3
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL 345 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~ 345 (347)
.-.|.++||++++++ +.++..++.++++.|.+.+
T Consensus 50 ~~ps~~~LA~~~~~s-~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSIS-VEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSC-HHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 447999999999988 7999999999999998765
No 246
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=46.81 E-value=17 Score=33.84 Aligned_cols=79 Identities=9% Similarity=-0.050 Sum_probs=58.7
Q ss_pred HHhhCCCCCchhhHHHHHHHHHHh-----cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q 019008 129 IRKIQSSTEHLTTLHPEFLQLCLL-----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (347)
Q Consensus 129 i~r~~~~~~~lT~~H~~ll~l~l~-----~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~a 203 (347)
...+||+- .--+.|..|-.+|.. -+..+.|...+++.+ .+++.....-+++|+--..--++++++|...|+.|
T Consensus 189 AleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL-~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 189 ACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT-RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH-HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34568751 124578888888888 489999999999875 34434446777777766555579999999999999
Q ss_pred hcCCcc
Q 019008 204 VTAPMS 209 (347)
Q Consensus 204 i~~P~~ 209 (347)
+.+|..
T Consensus 267 L~a~p~ 272 (301)
T 3u64_A 267 LAIDPE 272 (301)
T ss_dssp HHCCGG
T ss_pred HcCCCC
Confidence 997764
No 247
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=46.32 E-value=35 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=29.0
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++..|||+.++++ ..-+-..+..+.+.|.+.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 568999999999987 677889999999999764
No 248
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.95 E-value=29 Score=37.24 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
..++..|+..+.|+.|..++.- .+ .+.... |..|+++...|++++|.++|+.|-.
T Consensus 814 ~~l~~~L~~~~~~~~a~eL~~~--~~---~t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQLIGW--LN---SDPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGG--CC---SSHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcHHHHHHHHHhh--cC---CChHHH--HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4578888999999988876632 21 112233 8899999999999999999998864
No 249
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=45.14 E-value=31 Score=25.34 Aligned_cols=44 Identities=7% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...|..+...-..++.+|||+.++++ ..-+-.++..+.+.|.+.
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is-~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLS-KTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 33444454445679999999999998 677889999999999764
No 250
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=44.06 E-value=99 Score=29.29 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=7.9
Q ss_pred hhHHHHHHHHhcC
Q 019008 254 QPYMELVNTYNTG 266 (347)
Q Consensus 254 ~pY~~la~a~~~g 266 (347)
..+..|+..|..|
T Consensus 319 ~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 319 AADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 4556666666665
No 251
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=42.24 E-value=23 Score=35.00 Aligned_cols=56 Identities=5% Similarity=0.023 Sum_probs=43.8
Q ss_pred HHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008 150 CLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (347)
Q Consensus 150 ~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~ 205 (347)
+-..+.|+.|++++.+..-- + +..-+++.-+.-.|.+|..+++|++|..+++.++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45678899999888764321 1 22557888889999999999999999999998873
No 252
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.18 E-value=40 Score=24.55 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=35.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHcCCCChhhHHHHHHHHhh
Q 019008 288 LGLVKQVVSSMYKRNIQRLTQTY-----LTLSLQDIANTVQLNSSKEAEMHVLQMVT 339 (347)
Q Consensus 288 ~gLV~~~~~~~~r~~I~~L~~~Y-----s~IsL~dIa~~l~l~s~~eaE~~v~~mI~ 339 (347)
...+.+++..+....-.-+...| .-.|..+||+.+|++ ..-+...+.++++
T Consensus 9 ~~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis-~~tV~~~~~ra~~ 64 (87)
T 1tty_A 9 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT-RERIRQIEVKALR 64 (87)
T ss_dssp CSHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 34566666666655555566666 479999999999988 6667776666543
No 253
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=40.95 E-value=49 Score=25.70 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 296 SSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 296 ~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..-.|..|..+-..-..++.++||+.++++ ...+-.++..+.+.|.+.
T Consensus 40 ~~~~rl~IL~~L~~~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 40 ADENRAKITYALCQDEELCVCDIANILGVT-IANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HSHHHHHHHHHHHHSSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 333444454443334678999999999998 678889999999888764
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=40.76 E-value=77 Score=33.17 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHh
Q 019008 147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (347)
Q Consensus 147 l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~a 203 (347)
++-|+..+.|+-|+++-.+.+.-- |.+|-. .|+.+.+|+.+++|+.|+-.+-.|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a--PseF~t-W~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA--LDSFES-WYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSCHHH-HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC--chhhHH-HHHHHHHHHHhccHHHHHHHHhcC
Confidence 567888999999999999876532 344444 466789999999999999655443
No 255
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=40.31 E-value=24 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.4
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHH
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVL 335 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~ 335 (347)
=|.+.++.+||..++++ .+++|.++.
T Consensus 45 GYL~~~l~eia~~l~~~-~~eve~vL~ 70 (76)
T 2k9l_A 45 GFLSKSVEEISDVLRCS-VEELEKVRQ 70 (76)
T ss_dssp STTCCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCC-HHHHHHHHH
Confidence 38899999999999965 788887643
No 256
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=40.17 E-value=41 Score=25.22 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|..|...- .-..++..|||+.++++ ...+-.++..+.+.|.+.
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATRLPVS-RQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCee
Confidence 34444333 34568999999999997 677889999999988764
No 257
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=40.11 E-value=22 Score=28.23 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=29.3
Q ss_pred ccHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008 313 LSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL 345 (347)
Q Consensus 313 IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~ 345 (347)
+|.++||++++++ ..++...+.++++.|.+.+
T Consensus 52 ps~~~LA~~l~~s-~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 52 PTPAELAERMTVS-AAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp CCHHHHHHTSSSC-HHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 7999999999987 8999999999999998764
No 258
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=40.08 E-value=79 Score=29.93 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=12.5
Q ss_pred HHHHHHHHHh----hhcHHHHHHHHHHhhc
Q 019008 180 CYYGGMIFIG----QKRFRKALELLHNVVT 205 (347)
Q Consensus 180 ~yy~G~i~~~----~k~y~~A~~~l~~ai~ 205 (347)
+|..|.+|.. .+++++|.++|+.++.
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 3344444444 4555555555555543
No 259
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=39.42 E-value=1.3e+02 Score=27.46 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc---CCchhhhhhhcccccccCCchh
Q 019008 99 EKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA---KCYKAGLSVLEDDIYEINLPRD 175 (347)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~---~~y~~Al~~l~~~i~~i~~~~~ 175 (347)
+.|..+...+......-....+++..... ++.++|+. -|.-+.- +.++.. ..++.++.+.++-+..- |+.
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~-~L~~nP~~--~taWn~R--~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~ 102 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITEL-GINELASH--YTIWIYR--FNILKNLPNRNLYDELDWCEEIALDN--EKN 102 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHH-HHHHCTTC--HHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHCcHH--HHHHHHH--HHHHHHcccccHHHHHHHHHHHHHHC--ccc
Confidence 44555554444333333333345554433 44556643 3543322 334332 36788888887755421 222
Q ss_pred hHHHHHHHHHHH----Hhh---hcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHH
Q 019008 176 FFLYCYYGGMIF----IGQ---KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVS 226 (347)
Q Consensus 176 ~l~Y~yy~G~i~----~~~---k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~ 226 (347)
..-.+|.|.+. ... ++|++++.+++.++. .|.+.- .=.|+.|++-.
T Consensus 103 -y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~----aW~~R~~vl~~ 156 (306)
T 3dra_A 103 -YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH----VWSYRKWLVDT 156 (306)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 23344455555 444 678888888888886 776421 22366666644
No 260
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=37.29 E-value=34 Score=24.84 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-++|.|+|..+++. .+++..-|.....+|.+.
T Consensus 20 Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~lt 52 (72)
T 1wi9_A 20 KVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLT 52 (72)
T ss_dssp SEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSC
T ss_pred CeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeE
Confidence 458999999999999 677778888888888764
No 261
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.21 E-value=48 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=32.6
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|..+...-..++.+|||++++++ ..-+-..|.++.+.|.+.
T Consensus 22 l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHHHHHHCCCEE
Confidence 44444445678999999999997 677888999999998654
No 262
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=36.50 E-value=41 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.0
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++.+|||+.++++ ...+-..+..+.+.|.+.
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 678999999999988 678889999999999764
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.66 E-value=70 Score=30.61 Aligned_cols=86 Identities=7% Similarity=-0.133 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhCC--CC-CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 019008 122 VGPMLTAIRKIQS--ST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE 198 (347)
Q Consensus 122 i~~L~~Ai~r~~~--~~-~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~ 198 (347)
+.-+.+.+..... .+ ....-.|..+.+.++..|.++.|.+.+.+..-.-..+.+.+..+..--++++..++|..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4445555444322 12 22344678899999999999999999987433223367788888888889999999999999
Q ss_pred HHHHhhcCC
Q 019008 199 LLHNVVTAP 207 (347)
Q Consensus 199 ~l~~ai~~P 207 (347)
.+..+-+.+
T Consensus 190 ~~~ka~~~~ 198 (429)
T 4b4t_R 190 KLEAVNSMI 198 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999987644
No 264
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=34.83 E-value=55 Score=25.62 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=31.3
Q ss_pred HHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 305 ~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.+...-..++.+|||+.++++ ..-+-.+|.++.+.|.+.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHhhcCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 333344679999999999998 677888999999999764
No 265
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=34.51 E-value=2.9e+02 Score=25.86 Aligned_cols=47 Identities=11% Similarity=-0.049 Sum_probs=24.5
Q ss_pred ccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc----CCchhhhhhhcccc
Q 019008 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA----KCYKAGLSVLEDDI 167 (347)
Q Consensus 117 ~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~----~~y~~Al~~l~~~i 167 (347)
....++..++.|+..-++. ...|..+-.++... ++++.|...+.+..
T Consensus 194 ~~~~A~~~~~~aa~~g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3445666666666553332 22223333444333 56777777776655
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.48 E-value=67 Score=23.27 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 182 YGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
-.|--+++.+++++|...|-+|+. +|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 457778899999999999999998 776
No 267
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=33.30 E-value=58 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=29.2
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++.++||++++++ ...++.++..+.+.|.+.
T Consensus 25 ~~~s~~ela~~~~i~-~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS-EHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceE
Confidence 458999999999998 889999999999999753
No 268
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=33.20 E-value=27 Score=29.03 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=24.6
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-++++|+|+.++++ +.-|.+||++|.+.
T Consensus 30 ~~LTv~EVAe~LgVs-----~srV~~LIr~G~L~ 58 (148)
T 2kfs_A 30 PTYDLPRVAELLGVP-----VSKVAQQLREGHLV 58 (148)
T ss_dssp CEEEHHHHHHHHTCC-----HHHHHHHHHTTSCC
T ss_pred ceEcHHHHHHHhCCC-----HHHHHHHHHCCCce
Confidence 357899999999998 35788999999886
No 269
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=32.76 E-value=32 Score=33.72 Aligned_cols=95 Identities=6% Similarity=-0.032 Sum_probs=40.1
Q ss_pred ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccc----ccCC-------ch------hhHHHHH
Q 019008 119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY----EINL-------PR------DFFLYCY 181 (347)
Q Consensus 119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~----~i~~-------~~------~~l~Y~y 181 (347)
--++..++.+.....+ + .+-+.|+.++-+.+.++.+..+++.|-. .+.. .. +...++.
T Consensus 78 EeAi~yl~~ark~~~~-~----~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~ 152 (449)
T 1b89_A 78 EELVKYLQMARKKARE-S----YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG 152 (449)
T ss_dssp ------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCcc-c----hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHH
Confidence 3355656555553222 2 2345677777778888888888877521 1110 00 1224455
Q ss_pred HHHHHHHhhhcHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHH
Q 019008 182 YGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLI 228 (347)
Q Consensus 182 y~G~i~~~~k~y~~A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL 228 (347)
--|-++..+++|++|.++++.|- . +++||.++-++.-
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA~-~---------~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKAN-S---------TRTWKEVCFACVD 189 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHT-C---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHcC-C---------chhHHHHHHHHHH
Confidence 66788888999999999999882 1 3456776666644
No 270
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.76 E-value=1.1e+02 Score=21.01 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHh
Q 019008 290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338 (347)
Q Consensus 290 LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI 338 (347)
.+..++..+......-+...+.-.+..+||+.++++ ..-+...+.++.
T Consensus 9 ~l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is-~~tV~~~~~r~~ 56 (79)
T 1x3u_A 9 DIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDIS-PRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 344555555444444444457889999999999986 555555554443
No 271
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.52 E-value=18 Score=34.07 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=33.9
Q ss_pred HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
|.++-. ...+|-+|||++++|+ ..-+-.+|.+|+++|.+.
T Consensus 25 il~~l~-~~~~sr~~la~~~gls-~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLT-KTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 444455 7889999999999998 778889999999999864
No 272
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=32.32 E-value=61 Score=24.27 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=28.3
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++..|||+.++++ ...+-.++..+.+.|.+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 468999999999997 677888999999888764
No 273
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=31.97 E-value=41 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=28.8
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEV 342 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~ 342 (347)
..+|+.+||+.-+|. ...++.++.+.+.+|.
T Consensus 31 ~G~sleeIA~~R~L~-~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 31 RKVALDDIAVSHGLD-FPELLSEVETIVYSGT 61 (122)
T ss_dssp TTCCHHHHHHHTTCC-HHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHcCCC-HHHHHHHHHHHHHcCC
Confidence 678999999999999 8899999999999996
No 274
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=31.25 E-value=48 Score=24.26 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=27.9
Q ss_pred ccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 313 LSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 313 IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.+..+||+++|++ -.++-+++-++-++|.+-
T Consensus 30 ~Ta~~IAkkLg~s-K~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 30 TTAISLSNRLKIN-KKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp ECHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 7889999999998 688999999999999873
No 275
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=30.88 E-value=77 Score=23.15 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=26.8
Q ss_pred ccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 313 LSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 313 IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
++.+|||++++++ ..-+-.+|.+|.+.|.+
T Consensus 31 ~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSP-HSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCcCc
Confidence 8999999999998 67788899999999875
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.87 E-value=79 Score=30.48 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCchhhhhhhccc---ccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008 142 LHPEFLQLCLLAKCYKAGLSVLEDD---IYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV 204 (347)
Q Consensus 142 ~H~~ll~l~l~~~~y~~Al~~l~~~---i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai 204 (347)
+...|.+++...+.|..|..++..= .+.......-++|+..--+++...++|.+|...+..+-
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3457889999999999999998762 22223356778999999999999999999999888764
No 277
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=30.73 E-value=51 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=31.1
Q ss_pred HHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 305 ~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-|+.-... +.++||++++++ ..-++.++.++.+.|.+.
T Consensus 17 ~La~~~~~-s~~~IA~~~~i~-~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 17 LISMDEKT-SSEIIADSVNTN-PVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHTCSCC-CHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHhCCCC-CHHHHHHHHCcC-HHHHHHHHHHHHHCCceE
Confidence 34433445 999999999999 899999999999999764
No 278
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.65 E-value=82 Score=27.81 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=30.8
Q ss_pred hhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 308 ~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
...-..+..+||.+++++ +.+++..+.+|.+.|.+
T Consensus 174 l~~~~~t~~~la~~~~l~-~~~V~~~l~~L~~~~~v 208 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLK-EREVREKISEMARFVPV 208 (232)
T ss_dssp HHSSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCE
T ss_pred HhcCCCCHHHHHHHhCcC-HHHHHHHHHHHHhcCCe
Confidence 445678899999999999 89999999999999876
No 279
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.56 E-value=3.3e+02 Score=25.29 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=74.2
Q ss_pred hhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc-C-Cchhhhhhhccccccc
Q 019008 93 QIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-K-CYKAGLSVLEDDIYEI 170 (347)
Q Consensus 93 Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~-~-~y~~Al~~l~~~i~~i 170 (347)
||-|. +.|..+...+.........+.+++.....+ +.++|.. .|.-+.- +.++.. + .++.++.++++-+..-
T Consensus 46 ~i~y~-~~y~~~~~~~r~~~~~~e~se~AL~lt~~~-L~~nP~~--ytaWn~R--~~iL~~l~~~l~eEL~~~~~~L~~n 119 (349)
T 3q7a_A 46 PIMYS-EEYKDAMDYFRAIAAKEEKSERALELTEII-VRMNPAH--YTVWQYR--FSLLTSLNKSLEDELRLMNEFAVQN 119 (349)
T ss_dssp CBCCC-HHHHHHHHHHHHHHHTTCCSHHHHHHHHHH-HHHCTTC--HHHHHHH--HHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred eeeeC-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHhCchh--HHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 45443 345555555544444444455666665554 5567743 4544332 333333 2 5889999998865422
Q ss_pred CCchhhHHHHHHHHHHHHhh-h-cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHh
Q 019008 171 NLPRDFFLYCYYGGMIFIGQ-K-RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIH 229 (347)
Q Consensus 171 ~~~~~~l~Y~yy~G~i~~~~-k-~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~ 229 (347)
++ ...-.++.|.+.-.+ + +++++++++..++. -|.+. . .=.|+.|++-.+-.
T Consensus 120 --PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-~---AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 120 --LK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY-H---TWAYLHWLYSHFST 174 (349)
T ss_dssp --CC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH-H---HHHHHHHHHHHHHH
T ss_pred --CC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH-H---HHHHHHHHHHHhcc
Confidence 22 344456667777766 6 89999999999997 77642 1 12477888776543
No 280
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.49 E-value=81 Score=26.81 Aligned_cols=44 Identities=9% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL 345 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~ 345 (347)
++.|.++-. -.++|.++||++++++ ...+-..+.++.+.|.+.-
T Consensus 22 ~~~IL~~L~-~~~~s~~eLA~~lglS-~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 22 RRKILKLLR-NKEMTISQLSEILGKT-PQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 334444434 3789999999999997 7889999999999998753
No 281
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=30.46 E-value=1e+02 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=47.2
Q ss_pred hcCCc-hhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc----------HHHHHHHHHHhhc-CCccchhHHHHHHH
Q 019008 152 LAKCY-KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR----------FRKALELLHNVVT-APMSSINAIAVEAY 219 (347)
Q Consensus 152 ~~~~y-~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~----------y~~A~~~l~~ai~-~P~~~~s~i~vea~ 219 (347)
..+.| +.|+...++-+-. ..++...++|.|.+...+++ |++|.++++.++. .|.+.-. =.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~---nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a----W~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT----WHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH----HHH
T ss_pred HcCCCCHHHHHHHHHHHHH---CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH----HHH
Confidence 33444 3467777765432 23456778889999999988 9999999999997 8864222 246
Q ss_pred HHHHHHH
Q 019008 220 KKYILVS 226 (347)
Q Consensus 220 Kk~iLv~ 226 (347)
+.|+|-.
T Consensus 113 R~w~l~~ 119 (567)
T 1dce_A 113 RCWLLSR 119 (567)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7787754
No 282
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=30.33 E-value=80 Score=24.16 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++.++||+.++++ ...+-..|.+|.+.|.+.
T Consensus 43 ~~~~~~~ela~~l~is-~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 43 DAPLHQLALQERLQID-RAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 3569999999999997 778888999999999764
No 283
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=29.98 E-value=74 Score=24.11 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=27.9
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++++||+.++++ ..-+-..+.++.+.|.+.
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 379999999999997 677888899998888764
No 284
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=29.72 E-value=88 Score=23.83 Aligned_cols=33 Identities=3% Similarity=-0.071 Sum_probs=29.0
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 479999999999998 677888999999999764
No 285
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=29.59 E-value=40 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008 315 LQDIANTVQLNSSKEAEMHVLQMVTFEVN 343 (347)
Q Consensus 315 L~dIa~~l~l~s~~eaE~~v~~mI~~G~~ 343 (347)
--.||+.+|+.++.||-..+-+|=+.|.|
T Consensus 27 AL~IAK~LGlktAK~VNp~LY~m~~~~lL 55 (72)
T 3eyi_A 27 ALVIAQALGMRTAKDVNRDLYRMKSRHLL 55 (72)
T ss_dssp HHHHHHHTTCCSGGGTHHHHHHHHHTTSE
T ss_pred HHHHHHHhCcchhhhcCHHHHHHHHccCc
Confidence 34799999999999999999999998876
No 286
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.25 E-value=85 Score=23.78 Aligned_cols=47 Identities=9% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHcCCCChhhHHHHHHHHh
Q 019008 291 VKQVVSSMYKRNIQRLTQTY-----LTLSLQDIANTVQLNSSKEAEMHVLQMV 338 (347)
Q Consensus 291 V~~~~~~~~r~~I~~L~~~Y-----s~IsL~dIa~~l~l~s~~eaE~~v~~mI 338 (347)
+.+++..+....=.-+..-| .-.|+.+||+.+|++ .+-|..++.+++
T Consensus 13 l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS-~~tVr~~~~rAl 64 (99)
T 3t72_q 13 THDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT-RERIRQIEAKAL 64 (99)
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 44444444433222233344 468888888888887 566666555544
No 287
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=28.77 E-value=69 Score=24.79 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=29.9
Q ss_pred hhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 308 ~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.... ++.+|||+.++++ ..-+-.+|.+|.+.|.+.
T Consensus 48 ~~~~-~t~~eLa~~l~~s-~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 48 SEES-LTNSELARRLNVS-QAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp TTCC-CCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HhCC-CCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeE
Confidence 3445 9999999999998 677888999999999874
No 288
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=27.95 E-value=92 Score=23.71 Aligned_cols=34 Identities=3% Similarity=-0.032 Sum_probs=29.6
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLRRLEESGFIE 74 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 3678999999999997 778888999999999764
No 289
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.53 E-value=97 Score=23.61 Aligned_cols=34 Identities=3% Similarity=-0.053 Sum_probs=29.4
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 46 ~~~~~~~~la~~l~~~-~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 46 AACITPVELKKVLSVD-LGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-hHHHHHHHHHHHHCCCEE
Confidence 4568999999999997 678888999999999764
No 290
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=27.41 E-value=87 Score=23.92 Aligned_cols=34 Identities=6% Similarity=-0.098 Sum_probs=29.4
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 48 ~~~~t~~ela~~l~~s-~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 48 QGEMESYQLANQACIL-RPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HCSEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEE
Confidence 3468999999999997 678888999999999774
No 291
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.08 E-value=97 Score=23.96 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 43 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 3459999999999998 677889999999999875
No 292
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=26.89 E-value=83 Score=24.50 Aligned_cols=34 Identities=3% Similarity=-0.044 Sum_probs=29.6
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 52 ~~~~t~~ela~~l~~~-~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 52 TPGATAPQLGAALQMK-RQYISRILQEVQRAGLIE 85 (152)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCee
Confidence 3479999999999998 678888999999999774
No 293
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.81 E-value=40 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=27.8
Q ss_pred cccHHHHHHHcCCCChhh-HHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKE-AEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~e-aE~~v~~mI~~G~~~ 344 (347)
.++.++||+.++++ ..- +-.+|.+|.+.|.+.
T Consensus 30 ~~t~~eLa~~l~is-~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVS-EKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCC-HHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCC-chHHHHHHHHHHHHCCCee
Confidence 69999999999998 566 788999999999763
No 294
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.57 E-value=93 Score=24.13 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=29.6
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 3489999999999998 677888999999999775
No 295
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=26.50 E-value=47 Score=25.20 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.3
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++..|||+.++++ ...+-..+..+.+.|.+.
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQALKSGGLVE 69 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 568999999999987 677888999999888764
No 296
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.74 E-value=1.1e+02 Score=23.53 Aligned_cols=34 Identities=3% Similarity=-0.182 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCee
Confidence 3579999999999997 677888999999999764
No 297
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=25.42 E-value=96 Score=23.92 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=29.3
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHHHHHHCCCee
Confidence 679999999999998 678889999999999764
No 298
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.38 E-value=98 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=29.4
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||++++++ ...+-.+|.+|.+.|.+.
T Consensus 58 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIK-PQSANKILQDLLANGWIE 91 (162)
T ss_dssp CTTCCHHHHHHHHTSC-GGGHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCeE
Confidence 3579999999999998 667888999999999764
No 299
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=25.23 E-value=55 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=29.0
Q ss_pred cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.+|..+||++++++ ...++.++.++-+.|.+.
T Consensus 28 ~~s~~~IA~~~~i~-~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 28 CISLKSIAEENNLS-DLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp CEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCEEE
Confidence 58999999999998 899999999999999754
No 300
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=25.21 E-value=4.2e+02 Score=26.07 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=40.5
Q ss_pred CchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHH
Q 019008 155 CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSL 227 (347)
Q Consensus 155 ~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~L 227 (347)
.|+.++.++++.+- ++ ++ ...-++|.|.+....+ .|++|.++++.+|. .|.+. |+. .|+..+|-.+
T Consensus 124 ~~~~el~~~~k~l~-~d-~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~-saW---~~r~~ll~~l 191 (567)
T 1dce_A 124 NWARELELCARFLE-AD-ER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY-SSW---HYRSCLLPQL 191 (567)
T ss_dssp CHHHHHHHHHHHHH-HC-TT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH-HHH---HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh-hc-cc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc-cHH---HHHHHHHHhh
Confidence 44667777776543 22 22 2334566777777777 88889999888886 77642 322 2455555443
No 301
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=24.96 E-value=1.1e+02 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=30.1
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++.++||++++++ ...+-.+|.+|.+.|.+.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVDKLEEMGLVV 81 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHHHHHHCCCEE
Confidence 6789999999999997 677888999999999764
No 302
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.96 E-value=1.2e+02 Score=23.19 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.4
Q ss_pred cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCCC-cchHHHHHHHHHHCCCEE
Confidence 69999999999997 678888999999999764
No 303
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.92 E-value=1.4e+02 Score=22.98 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=29.8
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLRELERGGLIV 81 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCEe
Confidence 5679999999999997 677888999999999774
No 304
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=24.86 E-value=1e+02 Score=23.96 Aligned_cols=43 Identities=5% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHHHHhhhhcccHHHHHHHc--CCCChhhHHHHHHHHhhccccc
Q 019008 301 RNIQRLTQTYLTLSLQDIANTV--QLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 301 ~~I~~L~~~Ys~IsL~dIa~~l--~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+.|..+-+..-.++.++||+.+ +++ ...+...+.++.+.|.+.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS-~~aVs~rL~~Le~~GLV~ 60 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRIS-KSSVSRRLKKLADHDLLQ 60 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEE
Confidence 3444444455689999999999 665 788999999999999764
No 305
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=24.81 E-value=32 Score=28.70 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=34.1
Q ss_pred CCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH----------HHHHHHHHHhhc-CCcc
Q 019008 154 KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF----------RKALELLHNVVT-APMS 209 (347)
Q Consensus 154 ~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y----------~~A~~~l~~ai~-~P~~ 209 (347)
++|+.|.+..++.+- .+ |.+.-.|+-+|+ +++.++++ ++|..+|+.|+. -|..
T Consensus 16 ~~feeA~~~~~~Ai~-l~-P~~aea~~n~G~-~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK-SN-PLDADNLTRWGG-VLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHH-HC-TTCHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHH-HC-CCCHHHHHHHHH-HHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 345666666665442 11 334444554555 88877665 599999999998 8864
No 306
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=24.74 E-value=1.4e+02 Score=27.89 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=53.3
Q ss_pred HHHHHHhcCCch-hhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-cHHHHHHHHHHhhc-CCccchhHHHHHHHHHH
Q 019008 146 FLQLCLLAKCYK-AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-RFRKALELLHNVVT-APMSSINAIAVEAYKKY 222 (347)
Q Consensus 146 ll~l~l~~~~y~-~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~ 222 (347)
.+|..+.++.++ .|+...++-+.- +.++..-.+|.|.+...++ .+++|+.+++.++. .|.+.- +=.+++|
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~----aW~hR~w 131 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ----VWHHRLL 131 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH----HHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH----HHHHHHH
Confidence 456666777765 588888776542 2245566788899999998 59999999999997 886421 1236788
Q ss_pred HHHHH
Q 019008 223 ILVSL 227 (347)
Q Consensus 223 iLv~L 227 (347)
+|-.+
T Consensus 132 lL~~l 136 (349)
T 3q7a_A 132 LLDRI 136 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87764
No 307
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.74 E-value=98 Score=23.97 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=31.3
Q ss_pred HHHHhhh--hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 304 QRLTQTY--LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 304 ~~L~~~Y--s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.++-..| .-.+..|++..++++ .+++..++..+.+.|.++
T Consensus 10 ~~i~~~~~~~p~~~~~la~~~~~~-~~~~~~~l~~l~~~G~l~ 51 (121)
T 2pjp_A 10 QKAEPLFGDEPWWVRDLAKETGTD-EQAMRLTLRQAAQQGIIT 51 (121)
T ss_dssp HHHGGGCSSSCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 3444444 235788999999997 788999999999999764
No 308
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.64 E-value=88 Score=21.24 Aligned_cols=28 Identities=4% Similarity=0.162 Sum_probs=23.0
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhh
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVT 339 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~ 339 (347)
.-.|..+||+.+|++ ..-+...+.++++
T Consensus 24 ~g~s~~eIA~~lgis-~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVT-RERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 689999999999998 6777777776654
No 309
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=24.61 E-value=1.7e+02 Score=21.56 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 300 r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.+.++-|...=.-++-.|||+++|++ -.|+...+-+|=.+|-+.
T Consensus 22 ekVLe~LkeaG~PlkageIae~~Gvd-KKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAP-KRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHcCCcc
Confidence 34455556666789999999999999 699999999998888653
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.21 E-value=96 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=27.2
Q ss_pred hhhHHHHH---HHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008 174 RDFFLYCY---YGGMIFIGQKRFRKALELLHNVVT-APM 208 (347)
Q Consensus 174 ~~~l~Y~y---y~G~i~~~~k~y~~A~~~l~~ai~-~P~ 208 (347)
+..-+||. -.|--++++++++.|...|-+|+. +|+
T Consensus 14 e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 14 EAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 33445543 467788899999999999999998 886
No 311
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.20 E-value=1.1e+02 Score=22.18 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=21.6
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHh
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI 338 (347)
-+.-.|..+||+.+|++ ..-|...+.++.
T Consensus 50 ~~~g~s~~eIA~~lgis-~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIA-EGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 36678999999999998 566666555543
No 312
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.04 E-value=66 Score=25.95 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=29.0
Q ss_pred cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.++..+||++++++ ...++.++.++.+.|.+.
T Consensus 30 ~~~~~~iA~~~~i~-~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 30 LCTSDYMAESVNTN-PVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp GCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEE
Confidence 58999999999998 899999999999999753
No 313
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.04 E-value=1.2e+02 Score=23.71 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 4578999999999997 778888999999999764
No 314
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.90 E-value=1e+02 Score=23.65 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=28.9
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEE
Confidence 468999999999997 678888999999999775
No 315
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.86 E-value=1.2e+02 Score=23.75 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=28.9
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++..+||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 469999999999997 677888999999999774
No 316
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.68 E-value=96 Score=23.94 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=26.2
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++.++||++++++ ...+-.+|.+|.+.|.+.
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIRELEGRNLVR 82 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEe
Confidence 469999999999998 567788999999999764
No 317
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.44 E-value=60 Score=25.09 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=29.1
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++.+|||++++++ ..-+-.+|.+|.+.|.+.
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 579999999999998 677888999999999764
No 318
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.38 E-value=1e+02 Score=23.61 Aligned_cols=35 Identities=6% Similarity=-0.018 Sum_probs=30.2
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
....++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLDGLESQGLVR 83 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCee
Confidence 45679999999999998 677888999999999775
No 319
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.38 E-value=1.1e+02 Score=24.26 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||++++++ ...+-.+|.+|.+.|.+.
T Consensus 65 ~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 65 YGELTVGQLATLGVME-QSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 3579999999999998 677889999999999764
No 320
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.30 E-value=1.2e+02 Score=23.88 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=29.6
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVARLLERGFIR 94 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 4579999999999987 677888999999999774
No 321
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=23.28 E-value=1.3e+02 Score=23.33 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=29.4
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 54 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLA-CSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCee
Confidence 3568999999999998 677888999999999764
No 322
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=23.26 E-value=3e+02 Score=22.23 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhc----CChHHHHHHHHhccccccccccccHHHHHHHHHH
Q 019008 224 LVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNT----GKIVELETYVQTNREKFESDNNLGLVKQVVSSMY 299 (347)
Q Consensus 224 Lv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~----g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~ 299 (347)
||.-+....-| .+|.|-...+....+....-|.++...... |+.. ..-.+.-+.... .=.|+|+.++.
T Consensus 9 Ll~el~rs~~~-~Lppy~~dlVr~v~~ei~~l~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~i------~RnKrcLlAYl 80 (149)
T 2e9x_A 9 LIRELHRAPEG-QLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSD-LIPTIKFRHCSL------LRNRRCTVAYL 80 (149)
T ss_dssp HHHHHHHSCTT-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGG-GHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hhHHHHHHHHHH------HHHHHHHHHHH
Confidence 34444445566 788888888887776655566655543311 1110 000011111111 11388888888
Q ss_pred HHHHHHHHhhhhcc
Q 019008 300 KRNIQRLTQTYLTL 313 (347)
Q Consensus 300 r~~I~~L~~~Ys~I 313 (347)
++++.||.+.+-.+
T Consensus 81 ~~Rl~kI~~~~w~~ 94 (149)
T 2e9x_A 81 YDRLLRIRALRWEY 94 (149)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888877653
No 323
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=23.19 E-value=94 Score=25.65 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=29.4
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
..++..+||..+|++ .+.+-.++.+|.++|.+-
T Consensus 168 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 168 LKITHETIANHLGSH-REVITRMLRYFQVEGLVK 200 (220)
T ss_dssp ECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 378899999999997 888999999999999864
No 324
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=22.89 E-value=97 Score=24.26 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=29.7
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEE
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEe
Confidence 4678999999999998 677888999999999764
No 325
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=22.69 E-value=64 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=28.5
Q ss_pred cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 47 ~~t~~ela~~l~~~-~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 47 GLTQNDIAKALQRT-GPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp CEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEe
Confidence 78999999999998 677889999999999764
No 326
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=22.41 E-value=1.1e+02 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=29.3
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 57 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 57 HGPINLATLATLLGVQ-PSATGRMVDRLVGAELID 90 (168)
T ss_dssp HCSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 3469999999999998 677888999999999774
No 327
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=22.18 E-value=1e+02 Score=24.14 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 55 ~~~~t~~ela~~l~i~-~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 55 NDAMMITRLAKLSLME-QSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp CSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 4579999999999998 677888999999999764
No 328
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=22.12 E-value=74 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=29.1
Q ss_pred cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 312 TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 312 ~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.+|..+||++++++ ..-++.++.++-+.|.+.
T Consensus 44 ~~s~~eIA~~~~i~-~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 44 PISLRSIAQDKNLS-EHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp CBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEE
Confidence 58999999999998 899999999999998764
No 329
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=22.03 E-value=1.1e+02 Score=23.42 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 293 QVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 293 ~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
+++.+=.|..|..+-. -..++.++||+.++++ ...+-..+..+.+.|.+.
T Consensus 13 ~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~is-~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 13 QALADPTRRAVLGRLS-RGPATVSELAKPFDMA-LPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHTSHHHHHHHHHHH-TCCEEHHHHHTTCCSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHhCCHHHHHHHHHHH-hCCCCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeE
Confidence 3444444555544443 3678999999999988 677888999999988764
No 330
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.01 E-value=1.3e+02 Score=26.55 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=30.3
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-..++++|||++++++ ..-+-.++.+|.+.|.+.
T Consensus 163 ~~~~~s~~eLA~~lgls-ksTv~r~L~~Le~~GlV~ 197 (244)
T 2wte_A 163 ETKGTGITELAKMLDKS-EKTLINKIAELKKFGILT 197 (244)
T ss_dssp HHTCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 44679999999999998 677889999999999764
No 331
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=21.90 E-value=1.3e+02 Score=23.25 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=27.8
Q ss_pred ccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 313 LSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 313 IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
++..+||++++++ ..-+-..|..+.+.|.+.
T Consensus 43 ~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 43 IDTDALSKSLKLD-VSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp EEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 9999999999997 778889999999999764
No 332
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=21.88 E-value=92 Score=23.69 Aligned_cols=34 Identities=6% Similarity=0.001 Sum_probs=28.8
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCee
Confidence 4468999999999998 567788999999999764
No 333
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=21.86 E-value=1.3e+02 Score=22.01 Aligned_cols=33 Identities=3% Similarity=0.021 Sum_probs=28.0
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
...+..||++.++++ ...+-..+..+.+.|.+.
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLGVLRESGIVE 67 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 568999999999998 567888999999888764
No 334
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=21.85 E-value=66 Score=25.81 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.1
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHH
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHV 334 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v 334 (347)
|.+.++.+||..++++ .+++|.++
T Consensus 37 YL~~~l~eia~~l~~~-~~eve~vL 60 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCS-VEELEKVR 60 (130)
T ss_dssp SBSSCHHHHHHHTTCC-HHHHHHHH
T ss_pred CCCCCHHHHHHHcCCC-HHHHHHHH
Confidence 8889999999999865 78888654
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.80 E-value=2.4e+02 Score=24.53 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=58.3
Q ss_pred chHHHHHHHHhhCCCCCchhhHHHH--------HHHHHHhcCCchhhhhhhcccccccC-----------------Cchh
Q 019008 121 GVGPMLTAIRKIQSSTEHLTTLHPE--------FLQLCLLAKCYKAGLSVLEDDIYEIN-----------------LPRD 175 (347)
Q Consensus 121 ~i~~L~~Ai~r~~~~~~~lT~~H~~--------ll~l~l~~~~y~~Al~~l~~~i~~i~-----------------~~~~ 175 (347)
-+.||.+|+--++.-....+.+|-. -+-.|++.+.++.|.+++++-.-.-+ ++-.
T Consensus 90 ~lTPLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~ 169 (211)
T 3bqo_A 90 RITPLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHS 169 (211)
T ss_dssp TCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCH
T ss_pred CCChHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcH
Confidence 5789999999888654334455543 34579999999999999988544321 1335
Q ss_pred hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHH
Q 019008 176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (347)
Q Consensus 176 ~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~i 223 (347)
++.+|=|.-|+. +-..+++..+. .|+ .|.++|.+|.|
T Consensus 170 ~lqnFSy~~~~~-------kik~fve~~~~e~~~----~FLl~aA~Kvv 207 (211)
T 3bqo_A 170 FFQHFSYNHMME-------KIKSYVNYVLSEKSS----TFLMKAAAKVV 207 (211)
T ss_dssp HHHHSCHHHHHH-------HHHHHHHHHHHHHTT----SHHHHHHHHHH
T ss_pred HHHHccHHHHHH-------HHHHHHHHHhcccCc----HHHHHHHHHHH
Confidence 677777765443 33467777775 443 45555555543
No 336
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.71 E-value=1.2e+02 Score=23.64 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=29.1
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVDGLISLGLVV 86 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 568999999999997 678889999999999875
No 337
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.55 E-value=3.2e+02 Score=21.96 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhcC-CChhcHHHHHHHHHHhHHHHhhhhhhhhhhhhhcCchhhHHHHHHHHHHhhhcc
Q 019008 3 SIENLVTQIQGLS-SNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCS 69 (347)
Q Consensus 3 ~l~~~~~~i~~~~-~s~~~~~~L~~~L~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~~~~~~~ 69 (347)
.++.|.+....|+ .|+.....|..+...+.+.-..-......-+.. -|..|=|+.||+++..+...
T Consensus 8 ~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~ 74 (144)
T 1sz9_A 8 IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK-CMPKQKLYAFYALDSICKNV 74 (144)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhc
Confidence 4678888899997 777667777665544322111111111111222 47789999999999888643
No 338
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=21.48 E-value=4.4e+02 Score=25.56 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=52.2
Q ss_pred HHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q 019008 109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI 188 (347)
Q Consensus 109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~ 188 (347)
+.++...+.-..|+...+.| ++ +..-...+-.|...+.++.|...-.+ +. +. +.+ +. -..-.|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~--~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~-ad~-l~---~lv~~Ye 218 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NS--TRTWKEVCFACVDGKEFRLAQMCGLH-IV-VH-ADE-LE---ELINYYQ 218 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TC--HHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TC-HHH-HH---HHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc-------CC--chhHHHHHHHHHHcCcHHHHHHHHHH-HH-hC-Hhh-HH---HHHHHHH
Confidence 33444555554566666665 12 33446778899999999999665553 32 11 222 11 1333467
Q ss_pred hhhcHHHHHHHHHHhhcC
Q 019008 189 GQKRFRKALELLHNVVTA 206 (347)
Q Consensus 189 ~~k~y~~A~~~l~~ai~~ 206 (347)
..|+|++|..+|+.++..
T Consensus 219 k~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 219 DRGYFEELITMLEAALGL 236 (449)
T ss_dssp HTTCHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHhCC
Confidence 889999999999999974
No 339
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=21.28 E-value=71 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=29.8
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 48 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLD-SGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp TCEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCeE
Confidence 4679999999999997 778889999999999764
No 340
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.28 E-value=82 Score=23.23 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=22.8
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhh
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVT 339 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~ 339 (347)
.+.-.|..+||+.++++ ..-+...+.++.+
T Consensus 39 ~~~g~s~~eIA~~l~is-~~tV~~~l~r~~~ 68 (95)
T 3c57_A 39 LSEGLTNKQIADRMFLA-EKTVKNYVSRLLA 68 (95)
T ss_dssp HHTTCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 37889999999999996 6666666665543
No 341
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=21.02 E-value=1.1e+02 Score=24.19 Aligned_cols=33 Identities=3% Similarity=0.122 Sum_probs=29.1
Q ss_pred hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
-.++.+|||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 568999999999998 678889999999999764
No 342
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.89 E-value=1.2e+02 Score=23.79 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhhcc-cHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008 287 NLGLVKQVVSSMYKRNIQRLTQTYLTL-SLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL 345 (347)
Q Consensus 287 n~gLV~~~~~~~~r~~I~~L~~~Ys~I-sL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~ 345 (347)
...+-.++...+...-+..--+.=.+| |..++|++++++ ..-+...+..+..+|.+..
T Consensus 9 ~~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vS-r~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 9 KRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKIN-PNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 345555555444433322222333578 999999999986 7788888999999998653
No 343
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=20.73 E-value=1.2e+02 Score=23.64 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=29.5
Q ss_pred hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
.-.++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEe
Confidence 4578999999999987 677888999999999764
No 344
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=20.39 E-value=1.2e+02 Score=23.60 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.2
Q ss_pred hhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL 344 (347)
Q Consensus 309 ~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~ 344 (347)
....++.++||+.++++ ...+-.+|.+|.+.|.+.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHHHHHHTTSEE
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence 56789999999999998 566778999999999875
Done!