Query 019010
Match_columns 347
No_of_seqs 242 out of 1374
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00504 Ubox Modified RING 99.3 4.3E-12 9.3E-17 94.7 4.5 61 223-283 1-62 (63)
2 PF04564 U-box: U-box domain; 99.2 9.4E-12 2E-16 97.1 4.4 67 221-287 2-70 (73)
3 PF15227 zf-C3HC4_4: zinc fing 99.2 1.1E-11 2.4E-16 87.3 2.0 37 226-262 1-42 (42)
4 TIGR00599 rad18 DNA repair pro 99.1 3.9E-11 8.4E-16 120.6 5.9 72 219-290 22-94 (397)
5 KOG0823 Predicted E3 ubiquitin 99.0 6.3E-11 1.4E-15 110.6 2.1 55 221-275 45-103 (230)
6 PLN03208 E3 ubiquitin-protein 99.0 1.8E-10 4E-15 105.5 3.1 54 221-274 16-86 (193)
7 PF14835 zf-RING_6: zf-RING of 99.0 3.1E-10 6.6E-15 86.8 3.0 62 219-281 3-65 (65)
8 KOG0287 Postreplication repair 98.9 3.6E-10 7.8E-15 110.5 2.3 73 217-289 17-90 (442)
9 KOG2177 Predicted E3 ubiquitin 98.8 1.2E-09 2.6E-14 99.1 2.4 83 218-302 8-95 (386)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.1E-09 6.6E-14 73.1 1.5 37 226-262 1-39 (39)
11 KOG0317 Predicted E3 ubiquitin 98.7 5.1E-09 1.1E-13 100.6 2.3 50 221-270 237-287 (293)
12 KOG0320 Predicted E3 ubiquitin 98.7 5.4E-09 1.2E-13 94.4 1.6 53 221-273 129-184 (187)
13 COG5432 RAD18 RING-finger-cont 98.7 1.2E-08 2.5E-13 98.4 3.1 72 219-290 21-93 (391)
14 PF13920 zf-C3HC4_3: Zinc fing 98.6 1.6E-08 3.5E-13 73.0 1.8 45 223-267 2-48 (50)
15 PF00097 zf-C3HC4: Zinc finger 98.6 2.3E-08 5E-13 68.9 1.8 37 226-262 1-41 (41)
16 PF13639 zf-RING_2: Ring finge 98.6 1.7E-08 3.7E-13 71.0 0.7 39 225-263 2-44 (44)
17 PHA02929 N1R/p28-like protein; 98.5 3.9E-08 8.4E-13 93.1 2.9 46 222-267 173-227 (238)
18 KOG2164 Predicted E3 ubiquitin 98.5 4.5E-08 9.7E-13 100.2 2.1 54 223-276 186-245 (513)
19 PF13445 zf-RING_UBOX: RING-ty 98.4 6.1E-08 1.3E-12 68.8 1.1 29 226-255 1-33 (43)
20 cd00162 RING RING-finger (Real 98.4 1.2E-07 2.7E-12 64.4 2.6 42 225-266 1-45 (45)
21 KOG0311 Predicted E3 ubiquitin 98.4 1.3E-08 2.8E-13 100.1 -4.7 72 213-284 33-108 (381)
22 smart00184 RING Ring finger. E 98.3 5.2E-07 1.1E-11 59.1 2.3 37 226-262 1-39 (39)
23 PF14634 zf-RING_5: zinc-RING 98.2 5.3E-07 1.2E-11 63.6 2.2 40 225-264 1-44 (44)
24 KOG2660 Locus-specific chromos 98.2 3.2E-07 6.9E-12 89.8 1.4 68 219-286 11-84 (331)
25 PHA02926 zinc finger-like prot 98.2 5.5E-07 1.2E-11 84.2 2.1 47 221-267 168-230 (242)
26 COG5574 PEX10 RING-finger-cont 98.2 6E-07 1.3E-11 85.6 1.6 49 221-269 213-264 (271)
27 KOG0978 E3 ubiquitin ligase in 98.1 5.6E-07 1.2E-11 95.8 0.5 55 219-273 639-695 (698)
28 KOG0804 Cytoplasmic Zn-finger 98.1 2.6E-06 5.6E-11 86.3 4.1 125 136-267 74-222 (493)
29 TIGR00570 cdk7 CDK-activating 98.1 4.6E-06 1E-10 81.7 5.6 49 223-271 3-58 (309)
30 PF12678 zf-rbx1: RING-H2 zinc 97.8 9.1E-06 2E-10 63.6 2.1 39 225-263 21-73 (73)
31 KOG4159 Predicted E3 ubiquitin 97.7 1.9E-05 4.1E-10 80.0 2.4 47 221-267 82-129 (398)
32 COG5222 Uncharacterized conser 97.7 3.6E-05 7.7E-10 75.0 3.7 64 224-287 275-342 (427)
33 KOG0802 E3 ubiquitin ligase [P 97.6 1.3E-05 2.8E-10 84.0 0.6 46 222-267 290-341 (543)
34 PF11789 zf-Nse: Zinc-finger o 97.5 3.7E-05 8E-10 57.7 1.0 41 221-261 9-53 (57)
35 COG5243 HRD1 HRD ubiquitin lig 97.5 4.7E-05 1E-09 76.0 1.9 46 222-267 286-345 (491)
36 COG5152 Uncharacterized conser 97.4 5.2E-05 1.1E-09 70.1 1.5 59 222-281 195-254 (259)
37 KOG0297 TNF receptor-associate 97.4 0.00013 2.8E-09 73.9 4.5 62 220-281 18-82 (391)
38 KOG2879 Predicted E3 ubiquitin 97.4 9.1E-05 2E-09 71.3 2.8 47 221-267 237-287 (298)
39 KOG0824 Predicted E3 ubiquitin 97.3 0.00012 2.6E-09 71.3 2.3 45 225-269 9-55 (324)
40 KOG4628 Predicted E3 ubiquitin 97.3 0.00015 3.4E-09 72.1 2.8 46 224-269 230-280 (348)
41 KOG1813 Predicted E3 ubiquitin 97.3 0.00017 3.7E-09 70.1 2.8 43 224-266 242-285 (313)
42 COG5540 RING-finger-containing 97.0 0.00029 6.2E-09 68.9 2.0 45 223-267 323-372 (374)
43 KOG1002 Nucleotide excision re 96.7 0.00044 9.5E-09 71.8 0.6 49 221-269 534-588 (791)
44 PF12861 zf-Apc11: Anaphase-pr 96.7 0.00099 2.1E-08 54.0 2.4 42 226-267 35-82 (85)
45 KOG1645 RING-finger-containing 96.5 0.0011 2.3E-08 67.1 1.4 58 224-281 5-70 (463)
46 KOG4367 Predicted Zn-finger pr 96.4 0.0012 2.6E-08 67.4 0.8 35 220-254 1-35 (699)
47 KOG4265 Predicted E3 ubiquitin 96.3 0.0019 4.2E-08 64.3 1.8 45 223-267 290-336 (349)
48 KOG4172 Predicted E3 ubiquitin 96.2 0.00073 1.6E-08 50.6 -1.1 44 224-267 8-54 (62)
49 KOG1734 Predicted RING-contain 96.1 0.00099 2.1E-08 64.3 -1.0 51 224-274 225-288 (328)
50 KOG0828 Predicted E3 ubiquitin 96.1 0.0022 4.8E-08 66.2 1.0 47 221-267 569-634 (636)
51 KOG1039 Predicted E3 ubiquitin 95.9 0.0039 8.4E-08 62.3 2.1 46 222-267 160-221 (344)
52 KOG4275 Predicted E3 ubiquitin 95.6 0.0045 9.8E-08 60.4 1.0 41 223-266 300-341 (350)
53 KOG0825 PHD Zn-finger protein 95.6 0.001 2.2E-08 71.7 -3.8 46 223-268 123-172 (1134)
54 PF11793 FANCL_C: FANCL C-term 95.5 0.0042 9.1E-08 48.3 0.4 45 223-267 2-66 (70)
55 PF14447 Prok-RING_4: Prokaryo 95.5 0.011 2.4E-07 44.3 2.6 48 222-270 6-53 (55)
56 KOG1785 Tyrosine kinase negati 95.4 0.0046 1E-07 62.6 0.4 43 225-267 371-416 (563)
57 KOG0827 Predicted E3 ubiquitin 95.3 0.0083 1.8E-07 60.6 1.7 49 224-272 5-61 (465)
58 KOG1571 Predicted E3 ubiquitin 95.2 0.0095 2E-07 59.5 1.7 46 220-267 302-347 (355)
59 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.017 3.8E-07 55.3 3.2 53 220-272 110-166 (260)
60 KOG4185 Predicted E3 ubiquitin 94.8 0.023 5E-07 54.7 3.2 62 223-284 3-77 (296)
61 KOG1001 Helicase-like transcri 94.4 0.0059 1.3E-07 66.0 -2.0 45 224-269 455-502 (674)
62 KOG3039 Uncharacterized conser 94.3 0.024 5.3E-07 54.3 2.0 52 222-273 220-276 (303)
63 KOG4692 Predicted E3 ubiquitin 94.0 0.022 4.8E-07 57.1 1.2 46 222-267 421-467 (489)
64 smart00744 RINGv The RING-vari 94.0 0.035 7.6E-07 40.3 1.9 39 225-263 1-49 (49)
65 COG5175 MOT2 Transcriptional r 93.3 0.042 9.1E-07 54.9 1.8 47 225-271 16-68 (480)
66 KOG3161 Predicted E3 ubiquitin 93.2 0.027 5.8E-07 60.1 0.3 40 220-260 8-51 (861)
67 KOG4362 Transcriptional regula 92.7 0.034 7.3E-07 59.9 0.1 64 219-282 17-84 (684)
68 KOG3002 Zn finger protein [Gen 92.6 0.1 2.2E-06 51.4 3.3 63 219-286 44-107 (299)
69 KOG2817 Predicted E3 ubiquitin 92.5 0.059 1.3E-06 54.6 1.5 46 221-266 332-384 (394)
70 COG5219 Uncharacterized conser 92.5 0.029 6.2E-07 62.2 -0.8 46 222-267 1468-1523(1525)
71 KOG3970 Predicted E3 ubiquitin 91.9 0.19 4.2E-06 47.8 4.0 43 225-267 52-105 (299)
72 KOG4739 Uncharacterized protei 91.8 0.081 1.8E-06 50.4 1.4 45 224-269 4-50 (233)
73 PF14570 zf-RING_4: RING/Ubox 91.7 0.1 2.2E-06 38.1 1.5 41 226-266 1-47 (48)
74 KOG0826 Predicted E3 ubiquitin 91.5 0.062 1.3E-06 53.3 0.4 47 221-267 298-346 (357)
75 PF05290 Baculo_IE-1: Baculovi 90.8 0.14 3E-06 45.0 1.8 48 222-269 79-134 (140)
76 KOG3800 Predicted E3 ubiquitin 90.7 0.16 3.4E-06 49.8 2.2 48 225-272 2-56 (300)
77 KOG1814 Predicted E3 ubiquitin 90.2 0.23 4.9E-06 50.8 3.0 44 221-264 182-237 (445)
78 PF02891 zf-MIZ: MIZ/SP-RING z 90.1 0.23 4.9E-06 36.2 2.2 41 224-265 3-50 (50)
79 KOG1941 Acetylcholine receptor 89.5 0.087 1.9E-06 53.5 -0.6 43 222-264 364-413 (518)
80 KOG1493 Anaphase-promoting com 88.9 0.097 2.1E-06 41.9 -0.6 42 226-267 34-81 (84)
81 COG5194 APC11 Component of SCF 88.8 0.27 5.9E-06 39.7 1.9 28 240-267 53-81 (88)
82 KOG3039 Uncharacterized conser 87.5 0.3 6.5E-06 47.0 1.6 38 217-254 37-74 (303)
83 PHA03096 p28-like protein; Pro 87.1 0.25 5.5E-06 48.3 0.9 42 224-265 179-232 (284)
84 COG5236 Uncharacterized conser 87.0 0.37 8.1E-06 48.4 2.1 45 221-265 59-106 (493)
85 KOG0298 DEAD box-containing he 87.0 0.12 2.6E-06 59.0 -1.6 50 216-265 1146-1197(1394)
86 PF10367 Vps39_2: Vacuolar sor 86.9 0.33 7.2E-06 39.1 1.4 31 222-252 77-109 (109)
87 PF07800 DUF1644: Protein of u 86.2 0.43 9.3E-06 43.1 1.8 20 223-242 2-21 (162)
88 PF07191 zinc-ribbons_6: zinc- 86.0 0.11 2.4E-06 40.8 -1.7 40 224-267 2-41 (70)
89 KOG2114 Vacuolar assembly/sort 85.9 0.71 1.5E-05 51.0 3.6 39 224-264 841-880 (933)
90 PF06524 NOA36: NOA36 protein; 85.1 0.77 1.7E-05 44.6 3.0 8 16-23 191-198 (314)
91 KOG1812 Predicted E3 ubiquitin 85.0 0.75 1.6E-05 46.8 3.1 48 222-269 145-205 (384)
92 COG5109 Uncharacterized conser 83.3 0.54 1.2E-05 46.8 1.2 47 219-265 332-385 (396)
93 KOG2932 E3 ubiquitin ligase in 82.4 0.5 1.1E-05 46.9 0.6 44 223-267 90-134 (389)
94 KOG1100 Predicted E3 ubiquitin 80.2 0.93 2E-05 42.4 1.5 39 226-267 161-200 (207)
95 KOG1428 Inhibitor of type V ad 79.0 2.3 5E-05 49.9 4.3 61 222-288 3485-3559(3738)
96 KOG4642 Chaperone-dependent E3 78.5 1.6 3.5E-05 42.3 2.6 68 221-288 209-278 (284)
97 COG5220 TFB3 Cdk activating ki 75.8 0.88 1.9E-05 43.8 0.0 45 223-267 10-64 (314)
98 PF03066 Nucleoplasmin: Nucleo 74.1 1 2.2E-05 40.0 0.0 15 53-67 77-91 (149)
99 KOG2930 SCF ubiquitin ligase, 72.3 1.7 3.7E-05 36.7 0.9 25 241-265 81-106 (114)
100 KOG1940 Zn-finger protein [Gen 72.0 1.8 4E-05 42.3 1.2 40 225-264 160-204 (276)
101 KOG4445 Uncharacterized conser 71.2 0.87 1.9E-05 45.1 -1.2 43 225-267 117-186 (368)
102 KOG0825 PHD Zn-finger protein 71.2 2.4 5.3E-05 46.8 2.0 47 221-267 94-154 (1134)
103 PF10446 DUF2457: Protein of u 70.7 1.9 4.2E-05 44.6 1.1 7 175-181 186-192 (458)
104 KOG3113 Uncharacterized conser 69.4 4.2 9E-05 39.5 2.9 55 217-272 105-163 (293)
105 KOG3130 Uncharacterized conser 69.0 2.7 5.9E-05 43.1 1.7 6 34-39 203-208 (514)
106 PF10446 DUF2457: Protein of u 68.8 2.2 4.8E-05 44.2 1.0 8 171-178 189-196 (458)
107 PF08746 zf-RING-like: RING-li 68.5 4.1 9E-05 28.7 2.1 37 226-262 1-43 (43)
108 KOG2169 Zn-finger transcriptio 68.2 5.3 0.00012 43.3 3.8 74 212-286 295-375 (636)
109 KOG3268 Predicted E3 ubiquitin 67.9 2.6 5.5E-05 39.1 1.1 46 224-269 166-230 (234)
110 KOG1815 Predicted E3 ubiquitin 67.6 4.6 9.9E-05 41.7 3.0 47 221-267 68-126 (444)
111 KOG0314 Predicted E3 ubiquitin 63.3 4.6 9.9E-05 42.1 2.1 68 220-287 216-287 (448)
112 KOG1832 HIV-1 Vpr-binding prot 63.3 5 0.00011 45.2 2.4 7 49-55 1373-1379(1516)
113 PF10272 Tmpp129: Putative tra 63.0 3.5 7.7E-05 41.7 1.2 30 241-270 311-354 (358)
114 KOG0943 Predicted ubiquitin-pr 62.5 3.5 7.5E-05 47.7 1.1 12 76-87 1702-1713(3015)
115 PF03854 zf-P11: P-11 zinc fin 61.9 2.1 4.5E-05 31.4 -0.5 41 226-268 5-47 (50)
116 KOG2652 RNA polymerase II tran 60.6 5.6 0.00012 40.0 2.0 12 92-103 261-272 (348)
117 KOG2042 Ubiquitin fusion degra 60.0 13 0.00028 42.1 4.9 69 220-288 867-937 (943)
118 PTZ00415 transmission-blocking 59.9 4.1 8.9E-05 48.5 1.1 6 322-327 467-472 (2849)
119 PF05883 Baculo_RING: Baculovi 58.2 2.8 6.2E-05 36.9 -0.4 33 223-255 26-67 (134)
120 PHA02825 LAP/PHD finger-like p 56.2 9 0.0002 34.7 2.4 45 222-267 7-59 (162)
121 PF14353 CpXC: CpXC protein 56.2 5.2 0.00011 33.9 0.9 44 224-267 2-49 (128)
122 KOG2979 Protein involved in DN 52.0 6 0.00013 38.4 0.6 42 223-264 176-221 (262)
123 KOG3899 Uncharacterized conser 51.9 4.9 0.00011 39.8 0.1 30 241-270 325-368 (381)
124 COG5627 MMS21 DNA repair prote 51.5 16 0.00035 35.3 3.4 55 223-277 189-249 (275)
125 KOG3579 Predicted E3 ubiquitin 49.2 10 0.00022 37.5 1.8 34 222-255 267-304 (352)
126 PF12906 RINGv: RING-variant d 48.5 12 0.00026 26.8 1.6 37 226-262 1-47 (47)
127 KOG1952 Transcription factor N 48.2 8 0.00017 43.1 1.0 45 221-265 189-245 (950)
128 PHA02862 5L protein; Provision 48.0 12 0.00026 33.6 1.9 42 225-267 4-53 (156)
129 COG3813 Uncharacterized protei 45.4 25 0.00053 28.1 3.0 51 226-277 8-62 (84)
130 KOG4032 Uncharacterized conser 43.9 12 0.00027 34.5 1.3 22 91-112 130-151 (184)
131 KOG0289 mRNA splicing factor [ 43.8 13 0.00027 38.8 1.5 45 225-269 2-48 (506)
132 KOG0772 Uncharacterized conser 41.7 30 0.00064 37.0 3.8 13 53-66 82-94 (641)
133 PF04216 FdhE: Protein involve 41.5 6.3 0.00014 38.2 -1.0 42 224-265 173-220 (290)
134 PF08595 RXT2_N: RXT2-like, N- 41.1 23 0.0005 31.7 2.6 8 65-72 36-43 (149)
135 PRK14559 putative protein seri 40.4 19 0.00042 39.3 2.4 11 256-266 41-51 (645)
136 KOG2068 MOT2 transcription fac 39.9 20 0.00044 35.9 2.3 44 224-267 250-298 (327)
137 PF05605 zf-Di19: Drought indu 39.4 10 0.00022 27.5 0.1 36 223-265 2-40 (54)
138 KOG1812 Predicted E3 ubiquitin 37.9 15 0.00032 37.5 1.0 40 223-262 306-351 (384)
139 PF01363 FYVE: FYVE zinc finge 37.7 16 0.00034 27.5 0.9 34 221-254 7-44 (69)
140 PF12253 CAF1A: Chromatin asse 37.7 19 0.00042 28.7 1.4 11 93-103 52-62 (77)
141 PRK04023 DNA polymerase II lar 35.8 36 0.00078 39.1 3.6 44 223-267 626-674 (1121)
142 TIGR01562 FdhE formate dehydro 35.5 16 0.00035 36.3 0.8 43 223-265 184-233 (305)
143 PLN02189 cellulose synthase 35.3 26 0.00056 40.2 2.4 43 225-267 36-87 (1040)
144 cd00350 rubredoxin_like Rubred 33.7 29 0.00062 22.9 1.6 10 256-265 17-26 (33)
145 COG0068 HypF Hydrogenase matur 31.8 30 0.00065 38.2 2.1 48 220-267 98-184 (750)
146 PF06906 DUF1272: Protein of u 31.3 49 0.0011 25.1 2.6 44 225-269 7-54 (57)
147 KOG2034 Vacuolar sorting prote 31.1 18 0.00039 40.6 0.4 34 222-255 816-851 (911)
148 PLN02436 cellulose synthase A 30.9 34 0.00073 39.4 2.4 43 225-267 38-89 (1094)
149 PF10497 zf-4CXXC_R1: Zinc-fin 30.8 41 0.0009 28.1 2.4 24 242-265 37-70 (105)
150 PF06844 DUF1244: Protein of u 30.2 19 0.00042 28.1 0.3 12 244-255 11-22 (68)
151 smart00647 IBR In Between Ring 29.4 20 0.00044 25.9 0.3 19 240-258 45-63 (64)
152 KOG1824 TATA-binding protein-i 29.1 28 0.00061 39.7 1.4 8 81-88 308-315 (1233)
153 smart00064 FYVE Protein presen 29.1 35 0.00075 25.5 1.5 33 222-254 9-45 (68)
154 PF14569 zf-UDP: Zinc-binding 29.0 31 0.00067 27.9 1.3 43 225-267 11-62 (80)
155 PF10235 Cript: Microtubule-as 28.7 32 0.00068 28.4 1.3 36 224-267 45-80 (90)
156 PRK03564 formate dehydrogenase 28.6 29 0.00062 34.6 1.3 43 223-265 187-235 (309)
157 PRK11088 rrmA 23S rRNA methylt 28.4 32 0.0007 32.6 1.5 23 223-245 2-27 (272)
158 PF10571 UPF0547: Uncharacteri 28.2 33 0.00072 21.8 1.1 9 225-233 2-10 (26)
159 KOG4185 Predicted E3 ubiquitin 27.8 11 0.00024 36.2 -1.8 42 224-265 208-265 (296)
160 COG3076 Uncharacterized protei 27.8 31 0.00067 29.7 1.1 17 81-97 104-120 (135)
161 PF04147 Nop14: Nop14-like fam 26.3 43 0.00092 37.6 2.2 26 217-242 537-567 (840)
162 PF15234 LAT: Linker for activ 25.8 74 0.0016 29.8 3.3 17 61-77 83-100 (230)
163 cd00065 FYVE FYVE domain; Zinc 25.7 35 0.00075 24.4 1.0 30 225-254 4-37 (57)
164 PF04546 Sigma70_ner: Sigma-70 25.6 33 0.00072 31.7 1.0 6 43-48 27-32 (211)
165 KOG2231 Predicted E3 ubiquitin 25.5 43 0.00093 36.8 2.0 43 225-267 2-52 (669)
166 KOG4363 Putative growth respon 24.9 32 0.00069 33.5 0.8 29 87-115 43-71 (270)
167 PRK14714 DNA polymerase II lar 24.7 62 0.0013 38.1 3.1 45 223-267 667-720 (1337)
168 PTZ00007 (NAP-L) nucleosome as 24.5 56 0.0012 33.0 2.4 8 76-83 268-275 (337)
169 PLN03086 PRLI-interacting fact 24.4 66 0.0014 34.7 3.1 24 210-233 440-463 (567)
170 COG5183 SSM4 Protein involved 24.3 80 0.0017 35.7 3.7 46 222-267 11-66 (1175)
171 PF09538 FYDLN_acid: Protein o 24.0 43 0.00093 28.3 1.3 13 257-269 27-39 (108)
172 PF01485 IBR: IBR domain; Int 24.0 25 0.00054 25.4 -0.1 29 225-253 20-58 (64)
173 PRK11595 DNA utilization prote 23.7 57 0.0012 30.4 2.3 12 276-287 73-84 (227)
174 KOG2807 RNA polymerase II tran 23.3 32 0.00069 34.7 0.5 33 236-268 323-357 (378)
175 KOG2789 Putative Zn-finger pro 23.1 35 0.00075 35.3 0.7 33 222-254 73-107 (482)
176 KOG0468 U5 snRNP-specific prot 23.0 42 0.00092 37.2 1.3 17 84-100 10-26 (971)
177 KOG2140 Uncharacterized conser 22.7 39 0.00085 36.4 1.0 21 44-64 335-356 (739)
178 KOG3555 Ca2+-binding proteogly 22.5 48 0.001 33.9 1.5 6 42-47 332-337 (434)
179 KOG4718 Non-SMC (structural ma 22.1 37 0.00081 32.3 0.7 44 224-267 182-227 (235)
180 PF14446 Prok-RING_1: Prokaryo 21.8 63 0.0014 24.3 1.7 29 224-252 6-38 (54)
181 PF15387 DUF4611: Domain of un 21.5 38 0.00082 28.2 0.5 13 15-28 5-20 (96)
182 KOG0824 Predicted E3 ubiquitin 21.0 35 0.00076 34.1 0.2 47 221-267 103-151 (324)
183 COG3058 FdhE Uncharacterized p 21.0 62 0.0014 32.1 1.9 77 224-309 186-271 (308)
184 smart00132 LIM Zinc-binding do 20.9 96 0.0021 19.6 2.3 35 225-266 1-37 (39)
185 PF13240 zinc_ribbon_2: zinc-r 20.4 35 0.00076 21.0 0.1 7 258-264 15-21 (23)
186 PF05502 Dynactin_p62: Dynacti 20.0 54 0.0012 34.6 1.4 10 224-233 27-36 (483)
No 1
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.27 E-value=4.3e-12 Score=94.70 Aligned_cols=61 Identities=23% Similarity=0.478 Sum_probs=55.6
Q ss_pred ccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHH
Q 019010 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQA 283 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~ 283 (347)
.+.||||+++|.+||+++|||+||+.||..|++ ...||.|+.++...++.++..|+..++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 367999999999999999999999999999996 5689999999998999999999888753
No 2
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.22 E-value=9.4e-12 Score=97.07 Aligned_cols=67 Identities=27% Similarity=0.504 Sum_probs=55.9
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
.+.|.||||+++|.+||+++|||+|++.||..|++ ...||.|+.++...++.+|..|+..|+.+...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999997 47899999999999999999999999887664
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.16 E-value=1.1e-11 Score=87.25 Aligned_cols=37 Identities=32% Similarity=0.703 Sum_probs=30.0
Q ss_pred cccccCCcCCCeecCCCCccccccHHhhhc-----cCCCCCC
Q 019010 226 DPVTGNLMDDAMILPCGHSFGAAGVQHVIR-----MKACYTC 262 (347)
Q Consensus 226 CPIClell~dPVtl~CGHsFC~~CL~~~le-----~~~CP~C 262 (347)
||||+++|.+||+|+|||+||..||.++++ ...||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999996 2579987
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=3.9e-11 Score=120.63 Aligned_cols=72 Identities=17% Similarity=0.353 Sum_probs=64.7
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEEL 290 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~~ 290 (347)
.|+..+.|+||+++|.+|++++|||+||..||..|+. ...||.|+..+....+..|..|..||+.|+.....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhHH
Confidence 4577889999999999999999999999999999997 44799999999887899999999999999876654
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.3e-11 Score=110.56 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=48.2
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCCCCCCcCCCCcccH
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIAPNL 275 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~v~~~~l~pN~ 275 (347)
-..+.|.||+++.++||++.|||.|||.||.+|+. ...||+|+..++.+.+.|-+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45678999999999999999999999999999996 45899999999877666543
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=1.8e-10 Score=105.45 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=46.6
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc-----------------cCCCCCCCCCCcCCCCccc
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-----------------MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-----------------~~~CP~Cr~~v~~~~l~pN 274 (347)
...+.|+||++.+++|++++|||.||+.||..|+. ...||.|+..+....+.+.
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 45688999999999999999999999999999973 2479999999987666654
No 7
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.97 E-value=3.1e-10 Score=86.83 Aligned_cols=62 Identities=21% Similarity=0.448 Sum_probs=36.7
Q ss_pred ccccccccccccCCcCCCeec-CCCCccccccHHhhhccCCCCCCCCCCcCCCCcccHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAV 281 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~pN~~L~~LV 281 (347)
.++..+.|++|.++|+.||.+ .|.|.||+.||...+. ..||+|..+....+++.|..|..|+
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~-~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG-SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT-TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC-CCCCCcCChHHHHHHHhhhhhhccC
Confidence 356788999999999999975 5999999999998775 4699999999999999999998775
No 8
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.93 E-value=3.6e-10 Score=110.49 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=65.8
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEE 289 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~ 289 (347)
...|...|+|.||.++|.-||+++|+|+||.-||..++. ...||.|+..+....++.|..|..+|+.|...+.
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFARN 90 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999997 6689999999998899999999999999887664
No 9
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-09 Score=99.15 Aligned_cols=83 Identities=23% Similarity=0.448 Sum_probs=67.0
Q ss_pred cccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHHHh----h
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQ----F 292 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~~~----~ 292 (347)
..+.+.+.||||+++|.+|++++|||+||..||..++. ...||.|+. ... .+.+|..+..+++.+....... .
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~~~~~~ 85 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSRPLGSK 85 (386)
T ss_pred hhccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCccccccc
Confidence 34567889999999999999999999999999999885 468999996 333 7779999999999988765432 1
Q ss_pred hhhHHhhhhc
Q 019010 293 YRTCKRKREK 302 (347)
Q Consensus 293 ~~~Ck~h~E~ 302 (347)
...|..|.+.
T Consensus 86 ~~~c~~~~~~ 95 (386)
T KOG2177|consen 86 EELCEKHGEE 95 (386)
T ss_pred chhhhhcCCc
Confidence 2278888874
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.75 E-value=3.1e-09 Score=73.14 Aligned_cols=37 Identities=27% Similarity=0.663 Sum_probs=31.7
Q ss_pred cccccCCcCCC-eecCCCCccccccHHhhhc-cCCCCCC
Q 019010 226 DPVTGNLMDDA-MILPCGHSFGAAGVQHVIR-MKACYTC 262 (347)
Q Consensus 226 CPIClell~dP-Vtl~CGHsFC~~CL~~~le-~~~CP~C 262 (347)
|+||++.+.+| +.++|||+||..|+.+|++ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 5788999999999999987 5689987
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.1e-09 Score=100.60 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=44.6
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDS 270 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~ 270 (347)
+....|.||++...+|.-++|||.|||.||..|.. ...||.||..+.+..
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 55678999999999999999999999999999996 557999999987554
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.4e-09 Score=94.40 Aligned_cols=53 Identities=15% Similarity=0.406 Sum_probs=44.1
Q ss_pred ccccccccccCCcC--CCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcc
Q 019010 221 RAILSDPVTGNLMD--DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (347)
Q Consensus 221 ~e~L~CPIClell~--dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~p 273 (347)
...+.||||++.+. -|+.+.|||.||..||+..++ ...||+|+..+..+.+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 45588999999875 466788999999999999987 679999999888766543
No 13
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-08 Score=98.36 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=62.9
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEEL 290 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~~ 290 (347)
.|...++|-||..+++-|+.++|||+||.-||.+++. ...||+||.......+..+..++.+++.+....+.
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~~ 93 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNRDL 93 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhccHH
Confidence 4556789999999999999999999999999999997 67899999998877778888888888888776654
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.61 E-value=1.6e-08 Score=73.02 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=39.1
Q ss_pred ccccccccCCcCCCeecCCCCc-cccccHHhhhc-cCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
...|+||++...+++.++|||. ||..|+.+|+. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999999999999999 99999999986 679999999864
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.58 E-value=2.3e-08 Score=68.90 Aligned_cols=37 Identities=30% Similarity=0.671 Sum_probs=34.0
Q ss_pred cccccCCcCCCe-ecCCCCccccccHHhhhc---cCCCCCC
Q 019010 226 DPVTGNLMDDAM-ILPCGHSFGAAGVQHVIR---MKACYTC 262 (347)
Q Consensus 226 CPIClell~dPV-tl~CGHsFC~~CL~~~le---~~~CP~C 262 (347)
|+||++.+.+|+ +++|||+||..||.+|++ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 888999999999999986 4579987
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.55 E-value=1.7e-08 Score=70.96 Aligned_cols=39 Identities=23% Similarity=0.611 Sum_probs=33.0
Q ss_pred ccccccCCcC---CCeecCCCCccccccHHhhhc-cCCCCCCC
Q 019010 225 SDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR-MKACYTCS 263 (347)
Q Consensus 225 ~CPIClell~---dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr 263 (347)
.|+||++.+. .++.++|||.||..||..|++ ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4999999884 566788999999999999997 67999996
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.54 E-value=3.9e-08 Score=93.15 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=38.5
Q ss_pred cccccccccCCcCCC--------eecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDA--------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dP--------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
....|+||++.+.++ +.++|+|.||..||.+|++ ...||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 457899999977653 4567999999999999997 568999999875
No 18
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.5e-08 Score=100.22 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=46.7
Q ss_pred ccccccccCCcCCCeecCCCCccccccHHhhhc------cCCCCCCCCCCcCCCCcccHH
Q 019010 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLS 276 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHsFC~~CL~~~le------~~~CP~Cr~~v~~~~l~pN~~ 276 (347)
...||||++...-|+.+.|||.||..||.++|. ...||+|+..+..+++.+-..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 678999999999999999999999999999885 358999999998877766443
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.44 E-value=6.1e-08 Score=68.84 Aligned_cols=29 Identities=31% Similarity=0.706 Sum_probs=20.8
Q ss_pred cccccCCcCC----CeecCCCCccccccHHhhhc
Q 019010 226 DPVTGNLMDD----AMILPCGHSFGAAGVQHVIR 255 (347)
Q Consensus 226 CPIClell~d----PVtl~CGHsFC~~CL~~~le 255 (347)
||||.+ +.+ |+.|+|||+||+.||.++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 899999 888 99999999999999999885
No 20
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.44 E-value=1.2e-07 Score=64.39 Aligned_cols=42 Identities=21% Similarity=0.593 Sum_probs=36.3
Q ss_pred ccccccCCcCCCeecC-CCCccccccHHhhhc--cCCCCCCCCCC
Q 019010 225 SDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRPV 266 (347)
Q Consensus 225 ~CPIClell~dPVtl~-CGHsFC~~CL~~~le--~~~CP~Cr~~v 266 (347)
.|+||++.+.+++.++ |||.||..|+..|++ ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888777 999999999999986 46799998753
No 21
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.3e-08 Score=100.11 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=57.8
Q ss_pred CCCCccccccccccccccCCcCCCeecC-CCCccccccHHhhhc--cCCCCCCCCCCc-CCCCcccHHHHHHHHHH
Q 019010 213 ISGSGDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRPVL-EDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 213 ~s~~~~~L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le--~~~CP~Cr~~v~-~~~l~pN~~L~~LVe~~ 284 (347)
+-....++...+.||||+.+++..++++ |+|.||..||...++ ...||.||+.+. ...|.++.....|+..+
T Consensus 33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 3334567788899999999999999988 999999999998886 679999999875 55777766665555444
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.26 E-value=5.2e-07 Score=59.15 Aligned_cols=37 Identities=27% Similarity=0.730 Sum_probs=33.5
Q ss_pred cccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCC
Q 019010 226 DPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTC 262 (347)
Q Consensus 226 CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~C 262 (347)
|+||++....++.++|||.||..|+..|+. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999986 4579987
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.25 E-value=5.3e-07 Score=63.64 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=33.9
Q ss_pred ccccccCCc---CCCeecCCCCccccccHHhhh-ccCCCCCCCC
Q 019010 225 SDPVTGNLM---DDAMILPCGHSFGAAGVQHVI-RMKACYTCSR 264 (347)
Q Consensus 225 ~CPIClell---~dPVtl~CGHsFC~~CL~~~l-e~~~CP~Cr~ 264 (347)
.|+||.+.+ ..|+.++|||+||..|+.... ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999988 357788999999999999887 3568999974
No 24
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.25 E-value=3.2e-07 Score=89.78 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=56.1
Q ss_pred ccccccccccccCCcCCCeecC-CCCccccccHHhhhc-cCCCCCCCCCCcCC----CCcccHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLED----SIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~----~l~pN~~L~~LVe~~k~ 286 (347)
.+...+.|.+|..+|.||.|+. |.|+||++||.+++. ...||.|...+... .+..+..|+.+|-.+..
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVP 84 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVP 84 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcc
Confidence 4467789999999999999887 999999999999997 77999999887644 45667788777766543
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=98.21 E-value=5.5e-07 Score=84.24 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=37.3
Q ss_pred ccccccccccCCcCC---------CeecCCCCccccccHHhhhcc-------CCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDD---------AMILPCGHSFGAAGVQHVIRM-------KACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~d---------PVtl~CGHsFC~~CL~~~le~-------~~CP~Cr~~v~ 267 (347)
.++..|+||++...+ ++..+|+|+||..||..|.+. ..||.||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456789999987633 234469999999999999962 36999999875
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6e-07 Score=85.60 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=41.8
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHh-hhc--cCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQH-VIR--MKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~-~le--~~~CP~Cr~~v~~~ 269 (347)
...+.|+||++....|+.++|||.||+.||.. |-. .-.||.||+.+..+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 45788999999999999999999999999988 543 33599999987644
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.6e-07 Score=95.84 Aligned_cols=55 Identities=24% Similarity=0.427 Sum_probs=48.1
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcc
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAP 273 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~p 273 (347)
..+..|.||+|..-+++.|++.|||.||..|+.+.++ .+.||.|...|...++.+
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3467789999999999999999999999999999886 679999999998666543
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.09 E-value=2.6e-06 Score=86.32 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=83.0
Q ss_pred cccccccccccccCcccchhcccc-----------ccCCCCCCcCCCCcccccccChHHHHHhhhhcCCCCCCCCCCCc-
Q 019010 136 NCGILTAGVEKMGNGKAKNQLNFG-----------KIGNAGQNVNNGAIVTVAEADSDVYYSQYLQQGTEGSSGSGQKE- 203 (347)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~q~~~~-----------~~~n~~~~~~~~~~~~~~~~D~d~yys~~l~~~~~~~~~s~~k~- 203 (347)
+..|--.+++..++--+|++|... +-+-.|+ +--=|.-...+|++.||..|...+ |++.+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr--ymvLIkFr~q~da~~Fy~efNGk~----Fn~le~e~ 147 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR--YMVLIKFRDQADADTFYEEFNGKQ----FNSLEPEV 147 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce--EEEEEEeccchhHHHHHHHcCCCc----CCCCCccc
Confidence 445566778887887777777654 2222222 111122233389999999998743 3433322
Q ss_pred -------eeee-cCCCCCCCCccccccccccccccCCcCCCe----ecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 204 -------CVAV-DNGCGISGSGDSLRAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 204 -------~~~v-~~g~g~s~~~~~L~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
.+.+ ....+.+.....+-+..+||||++-|.+-+ ++.|.|+|-..|+..|+. .+||+||....
T Consensus 148 Chll~V~~ve~~~s~d~as~~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~-~scpvcR~~q~ 222 (493)
T KOG0804|consen 148 CHLLYVDRVEVTESEDGASEPPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD-SSCPVCRYCQS 222 (493)
T ss_pred eeEEEEEEEEEEecccCCCCCCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc-CcChhhhhhcC
Confidence 2222 333455556667788889999999998766 466999999999999984 58999998654
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.08 E-value=4.6e-06 Score=81.65 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=37.0
Q ss_pred ccccccccC--CcCCCe---ecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCC
Q 019010 223 ILSDPVTGN--LMDDAM---ILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (347)
Q Consensus 223 ~L~CPICle--ll~dPV---tl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l 271 (347)
...||+|+. ++..-+ +.+|||.||..||...+. ...||.|+..+....+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 357999997 333322 225999999999999774 4589999999886653
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.82 E-value=9.1e-06 Score=63.57 Aligned_cols=39 Identities=21% Similarity=0.517 Sum_probs=30.9
Q ss_pred ccccccCCcCC------------Ce-ecCCCCccccccHHhhhc-cCCCCCCC
Q 019010 225 SDPVTGNLMDD------------AM-ILPCGHSFGAAGVQHVIR-MKACYTCS 263 (347)
Q Consensus 225 ~CPIClell~d------------PV-tl~CGHsFC~~CL~~~le-~~~CP~Cr 263 (347)
.|+||++.|.+ ++ ..+|||.|...||.+|++ ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 49999998833 22 346999999999999997 56999997
No 31
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.9e-05 Score=80.02 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=43.0
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
...|.|.||..+|..|++++|||+||..||.+.+. ...||.|+..+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCcccccccc
Confidence 67889999999999999999999999999999775 568999999876
No 32
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.66 E-value=3.6e-05 Score=74.98 Aligned_cols=64 Identities=28% Similarity=0.545 Sum_probs=52.7
Q ss_pred cccccccCCcCCCeecC-CCCccccccHHhhhc--cCCCCCCCCC-CcCCCCcccHHHHHHHHHHHHH
Q 019010 224 LSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR--MKACYTCSRP-VLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 224 L~CPIClell~dPVtl~-CGHsFC~~CL~~~le--~~~CP~Cr~~-v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
|.||+|..+++.|+.++ |+|.||..||...+- .+.||.|... +..+.+.++.....-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 78999999999999986 999999999997763 6899999763 4566778888777777776553
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.3e-05 Score=84.05 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=40.7
Q ss_pred cccccccccCCcCC-----CeecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDD-----AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~d-----PVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
....|+||.+.|.. |..++|+|.||..|+..|++ ..+||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 35689999999988 78999999999999999997 679999999543
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.49 E-value=3.7e-05 Score=57.72 Aligned_cols=41 Identities=27% Similarity=0.489 Sum_probs=29.3
Q ss_pred ccccccccccCCcCCCeec-CCCCccccccHHhhhc---cCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR---MKACYT 261 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le---~~~CP~ 261 (347)
...+.|||.+..|.+||+. .|||+|.+..|..++. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3557899999999999985 6999999999999994 458998
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=4.7e-05 Score=75.98 Aligned_cols=46 Identities=24% Similarity=0.490 Sum_probs=38.6
Q ss_pred cccccccccCCc-C------------CCeecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLM-D------------DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell-~------------dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
.+-.|.||++-| . .|..++|||.+...|++.|++ ..+||+||.++.
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 445799999864 3 357899999999999999997 779999999954
No 36
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.44 E-value=5.2e-05 Score=70.15 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=44.7
Q ss_pred cccccccccCCcCCCeecCCCCccccccHHhhh-ccCCCCCCCCCCcCCCCcccHHHHHHH
Q 019010 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI-RMKACYTCSRPVLEDSIAPNLSLRAAV 281 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CGHsFC~~CL~~~l-e~~~CP~Cr~~v~~~~l~pN~~L~~LV 281 (347)
-.+.|.||.+-+..||.+.|||+||..|..+-. ....|-+|..... ..+.....|..|+
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~-G~f~V~~d~~kmL 254 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY-GRFWVVSDLQKML 254 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc-cceeHHhhHHHHH
Confidence 346899999999999999999999999976655 4778999987632 3344444455444
No 37
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.43 E-value=0.00013 Score=73.85 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=49.6
Q ss_pred cccccccccccCCcCCCeec-CCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcc-cHHHHHHH
Q 019010 220 LRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP-NLSLRAAV 281 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~p-N~~L~~LV 281 (347)
+...+.|++|...+.+|+.. .|||.||..|+..|+. ...||.|+..+......+ ...++.++
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~ 82 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRREL 82 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHH
Confidence 67889999999999999985 8999999999999997 579999988877554444 33334443
No 38
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=9.1e-05 Score=71.32 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=40.4
Q ss_pred ccccccccccCCcCCCeecC-CCCccccccHHhhhc---cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
.....||+|.+....|.++. |||.||..||..... .+.||.|...+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567999999999999876 999999999998764 679999998764
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00012 Score=71.28 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=39.7
Q ss_pred ccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCC
Q 019010 225 SDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLED 269 (347)
Q Consensus 225 ~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~ 269 (347)
.|+||+.-..-|+.+.|+|-||..||+.... ...|++||.++...
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 5999999999999999999999999997553 56799999998744
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00015 Score=72.14 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=37.4
Q ss_pred cccccccCCcCC--C-eecCCCCccccccHHhhhc-c-CCCCCCCCCCcCC
Q 019010 224 LSDPVTGNLMDD--A-MILPCGHSFGAAGVQHVIR-M-KACYTCSRPVLED 269 (347)
Q Consensus 224 L~CPIClell~d--P-Vtl~CGHsFC~~CL~~~le-~-~~CP~Cr~~v~~~ 269 (347)
..|.||++.+.. - ..|||.|.|...||..|+. . ..||+|+..+.+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 489999998863 2 2588999999999999996 3 4599999987643
No 41
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00017 Score=70.10 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=38.3
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCC
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPV 266 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v 266 (347)
+.|-||...+.+||++.|+|+||..|....++ ...|++|.+.+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceeccccc
Confidence 46999999999999999999999999877665 67999998864
No 42
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00029 Score=68.89 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=37.4
Q ss_pred ccccccccCCcC---CCeecCCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~---dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
...|.||+.-+. .-+.+||.|.|...|+.+|+- ...||+||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 367999998664 245789999999999999995 568999999875
No 43
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.75 E-value=0.00044 Score=71.82 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=42.7
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc------cCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR------MKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le------~~~CP~Cr~~v~~~ 269 (347)
.....|.+|.+...+++..+|-|.||+.||..++. ...||.|...++.+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34567999999999999999999999999998885 46999999887744
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.72 E-value=0.00099 Score=54.02 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=30.3
Q ss_pred cccccCCcCC-Ceec-CCCCccccccHHhhhc----cCCCCCCCCCCc
Q 019010 226 DPVTGNLMDD-AMIL-PCGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (347)
Q Consensus 226 CPIClell~d-PVtl-~CGHsFC~~CL~~~le----~~~CP~Cr~~v~ 267 (347)
||.|...-.+ |+.+ .|+|.|...||.+|++ ...||.||++..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4444433233 4443 5999999999999996 358999999864
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0011 Score=67.09 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=46.5
Q ss_pred cccccccCCcCCCe-----ecCCCCccccccHHhhhc---cCCCCCCCCCCcCCCCcccHHHHHHH
Q 019010 224 LSDPVTGNLMDDAM-----ILPCGHSFGAAGVQHVIR---MKACYTCSRPVLEDSIAPNLSLRAAV 281 (347)
Q Consensus 224 L~CPIClell~dPV-----tl~CGHsFC~~CL~~~le---~~~CP~Cr~~v~~~~l~pN~~L~~LV 281 (347)
-+||||++.+.-|+ .+.|||.|...||++|+. .+.||.|.....+..+.+-..++...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 46999999876654 456999999999999995 46899999888777777777664433
No 46
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.35 E-value=0.0012 Score=67.38 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=31.2
Q ss_pred cccccccccccCCcCCCeecCCCCccccccHHhhh
Q 019010 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI 254 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~l 254 (347)
++++|.||||...+.+|++|+|+|+.|+.|....+
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 36789999999999999999999999999986543
No 47
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0019 Score=64.25 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=38.4
Q ss_pred ccccccccCCcCCCeecCCCCc-cccccHHhhh-ccCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVI-RMKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHs-FC~~CL~~~l-e~~~CP~Cr~~v~ 267 (347)
...|-||+.-.++-+.|||.|. .|..|.+... ....||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4569999999999999999996 7999987654 3668999999875
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.00073 Score=50.61 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=36.7
Q ss_pred cccccccCCcCCCeecCCCCc-cccccHHhhhc--cCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHs-FC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
-.|.||.+-..+.|...|||. .|..|-.+.++ .-.||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 359999998888888899995 79999877775 558999999853
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.00099 Score=64.30 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=40.2
Q ss_pred cccccccCCcCCCe----------ecCCCCccccccHHhhhc---cCCCCCCCCCCcCCCCccc
Q 019010 224 LSDPVTGNLMDDAM----------ILPCGHSFGAAGVQHVIR---MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 224 L~CPIClell~dPV----------tl~CGHsFC~~CL~~~le---~~~CP~Cr~~v~~~~l~pN 274 (347)
-.|.||...+...+ +|+|+|+|..-||..|.- ..+||.|+..+..+.+..|
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 35999998775443 688999999999999973 5699999999875555444
No 50
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0022 Score=66.24 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=36.3
Q ss_pred ccccccccccCCcC-----------------CCeecCCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMD-----------------DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~-----------------dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
+...-|+||+.... .-+.+||-|.|...||++|+. ...||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34457999986442 234568999999999999998 347999999875
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0039 Score=62.34 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=36.8
Q ss_pred cccccccccCCcCCCe-------e-cCCCCccccccHHhhhc--------cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAM-------I-LPCGHSFGAAGVQHVIR--------MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPV-------t-l~CGHsFC~~CL~~~le--------~~~CP~Cr~~v~ 267 (347)
....|.||++...+.. + .+|.|.||..||..|.. .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4567999999766655 2 34999999999999983 479999998754
No 52
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0045 Score=60.42 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=34.3
Q ss_pred ccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPV 266 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v 266 (347)
...|.||.+...|.+.|+|||. -|..|-.+ ...||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr---m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR---MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc---cccCchHHHHH
Confidence 5579999999999999999995 58888654 34899999864
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.56 E-value=0.001 Score=71.71 Aligned_cols=46 Identities=17% Similarity=0.053 Sum_probs=37.1
Q ss_pred ccccccccCCcCCCee---cCCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 223 ILSDPVTGNLMDDAMI---LPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 223 ~L~CPIClell~dPVt---l~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
.-.||+|+.-+.+-.. .+|+|.||..||..|-+ ..+||+||..+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3479999877665443 45999999999999987 5699999998763
No 54
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.53 E-value=0.0042 Score=48.30 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=22.2
Q ss_pred ccccccccCCcC-C---Cee----cCCCCccccccHHhhhc------------cCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMD-D---AMI----LPCGHSFGAAGVQHVIR------------MKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~-d---PVt----l~CGHsFC~~CL~~~le------------~~~CP~Cr~~v~ 267 (347)
.+.|+||...+. + |.. ..|++.|...||..|+. .-.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999998654 2 222 24999999999999984 126999998875
No 55
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.51 E-value=0.011 Score=44.27 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=37.7
Q ss_pred cccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCcCCC
Q 019010 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDS 270 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~ 270 (347)
....|-.|...-...++++|||..|..|..-.. ...||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r-YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER-YNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh-ccCCCCCCCcccCCC
Confidence 345678888877788899999999999976433 458999999987543
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.42 E-value=0.0046 Score=62.58 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=37.9
Q ss_pred ccccccCCcCCCeecCCCCccccccHHhhhc---cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~dPVtl~CGHsFC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
.|.||-+-=++-.+-+|||..|..||..|.. ...||.||..+.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 5999999888877778999999999999984 579999998876
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.0083 Score=60.55 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=35.0
Q ss_pred cccccccCCcCCCe---ecC-CCCccccccHHhhhc----cCCCCCCCCCCcCCCCc
Q 019010 224 LSDPVTGNLMDDAM---ILP-CGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIA 272 (347)
Q Consensus 224 L~CPIClell~dPV---tl~-CGHsFC~~CL~~~le----~~~CP~Cr~~v~~~~l~ 272 (347)
..|.||.+.+-.-- .+. |||+|...|+..|++ .+.||+|+..+....+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 35999966543211 233 999999999999997 36899999666544443
No 58
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.0095 Score=59.51 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=37.2
Q ss_pred cccccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
+.....|-||++-.++.+-++|||.-| |..-......||+||+.+.
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHHHhhCCCCchhHHHHH
Confidence 345567999999999999999999976 7765555667999998764
No 59
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.08 E-value=0.017 Score=55.25 Aligned_cols=53 Identities=26% Similarity=0.586 Sum_probs=41.5
Q ss_pred cccccccccccCCcCC---Ce-ecCCCCccccccHHhhhccCCCCCCCCCCcCCCCc
Q 019010 220 LRAILSDPVTGNLMDD---AM-ILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIA 272 (347)
Q Consensus 220 L~e~L~CPIClell~d---PV-tl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~ 272 (347)
....+.|||+...|.. -| ..+|||+|+..+|........||+|..++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCEE
Confidence 3567899999998843 22 24799999999999875355799999999866654
No 60
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.023 Score=54.72 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=44.8
Q ss_pred ccccccccCCcC------CCeecCCCCccccccHHhhhc--cCCCCCCCCCCc-----CCCCcccHHHHHHHHHH
Q 019010 223 ILSDPVTGNLMD------DAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL-----EDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 223 ~L~CPIClell~------dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~-----~~~l~pN~~L~~LVe~~ 284 (347)
.+.|-||.+.+. -|..+.|||++|..|+.+.+. ...||.||.+.. ...+..|+.+..++..+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 356899987664 477788999999999999886 447899999842 23455566665555444
No 61
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.42 E-value=0.0059 Score=65.97 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=39.3
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhc---cCCCCCCCCCCcCC
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRPVLED 269 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le---~~~CP~Cr~~v~~~ 269 (347)
+.|++|.+ ...++.+.|+|.||..|+...+. ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 88899999999999999999886 34799999887643
No 62
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.024 Score=54.31 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=43.6
Q ss_pred cccccccccCCcCCCee----cCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcc
Q 019010 222 AILSDPVTGNLMDDAMI----LPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (347)
Q Consensus 222 e~L~CPIClell~dPVt----l~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~p 273 (347)
..+.||+|.+.|...+. -+|||.||..|+++.+. -..||+|..++..++++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 66899999999987553 35999999999999986 678999999988776654
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.022 Score=57.06 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=39.2
Q ss_pred cccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
++-.||||-.--..+|..||+|.-|+.||.+++- .+.|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4557999998888889999999999999998874 678999987654
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.01 E-value=0.035 Score=40.31 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=31.0
Q ss_pred ccccccC--CcCCCeecCCC-----CccccccHHhhhc---cCCCCCCC
Q 019010 225 SDPVTGN--LMDDAMILPCG-----HSFGAAGVQHVIR---MKACYTCS 263 (347)
Q Consensus 225 ~CPICle--ll~dPVtl~CG-----HsFC~~CL~~~le---~~~CP~Cr 263 (347)
.|.||++ .-.+|+..||. |.+...||.+|+. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 44577888875 7899999999995 44899995
No 65
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.32 E-value=0.042 Score=54.85 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=34.6
Q ss_pred ccccccCCcC--CCee--cCCCCccccccHHhhhc--cCCCCCCCCCCcCCCC
Q 019010 225 SDPVTGNLMD--DAMI--LPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (347)
Q Consensus 225 ~CPIClell~--dPVt--l~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l 271 (347)
.||+|.+.|. |--. -+||-..|+-|.....+ .-.||.||.....+..
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 4999999875 2222 35888889999877665 5689999998775543
No 66
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.027 Score=60.09 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=32.5
Q ss_pred cccccccccccCCc----CCCeecCCCCccccccHHhhhccCCCC
Q 019010 220 LRAILSDPVTGNLM----DDAMILPCGHSFGAAGVQHVIRMKACY 260 (347)
Q Consensus 220 L~e~L~CPIClell----~dPVtl~CGHsFC~~CL~~~le~~~CP 260 (347)
+...+.|+||+.+| ..||.+.|||+.|+.|++... ...||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly-n~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY-NASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh-hccCC
Confidence 45677899997766 379999999999999998655 55788
No 67
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.70 E-value=0.034 Score=59.94 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=48.7
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCCCCCCcCCCCcccHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSIAPNLSLRAAVQ 282 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~v~~~~l~pN~~L~~LVe 282 (347)
.+...+.||||...+++|+.+.|-|.||..|+...+. ...||+|+..+.+..++--.....+++
T Consensus 17 ~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 17 AMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred HHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHH
Confidence 3467788999999999999999999999999887664 457999998777555544333334443
No 68
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.58 E-value=0.1 Score=51.40 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccccccccccccCCcCCCeec-CCCCccccccHHhhhccCCCCCCCCCCcCCCCcccHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~ 286 (347)
..-+.+.||||...+..|+.- .=||..|..|-.+. ...||.|+.++.. ...+++.++++....
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~--~~~CP~Cr~~~g~---~R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV--SNKCPTCRLPIGN---IRCRAMEKVAEAVLV 107 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh--cccCCcccccccc---HHHHHHHHHHHhcee
Confidence 345678899999999988632 35899999997543 4589999999872 366666666655433
No 69
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.059 Score=54.60 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=37.1
Q ss_pred ccccccccccCCcC---CCeecCCCCccccccHHhhhc----cCCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR----MKACYTCSRPV 266 (347)
Q Consensus 221 ~e~L~CPIClell~---dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~v 266 (347)
...+.|||-.+.-. .|+.+.|||+.|+.-|.+... .+.||.|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 56679999877554 589999999999999988775 47899996543
No 70
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.46 E-value=0.029 Score=62.16 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=34.4
Q ss_pred cccccccccCCcC--C---Ce--ecCCCCccccccHHhhhc---cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMD--D---AM--ILPCGHSFGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~--d---PV--tl~CGHsFC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
..-.|+||-.++. + |- ...|.|-|..+||.+|++ ...||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3346999987664 1 11 123999999999999997 568999997764
No 71
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.19 Score=47.79 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=35.5
Q ss_pred ccccccCCcC--CCeecCCCCccccccHHhhhc---------cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMD--DAMILPCGHSFGAAGVQHVIR---------MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~--dPVtl~CGHsFC~~CL~~~le---------~~~CP~Cr~~v~ 267 (347)
-|.+|...+. +.+.|-|-|.|.+.|+..|.. ...||.|...+-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4999998775 666778999999999998874 468999988764
No 72
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.78 E-value=0.081 Score=50.36 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=31.7
Q ss_pred cccccccCCc-CCCeec-CCCCccccccHHhhhccCCCCCCCCCCcCC
Q 019010 224 LSDPVTGNLM-DDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (347)
Q Consensus 224 L~CPIClell-~dPVtl-~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~ 269 (347)
+.|..|...- .+|..| .|+|+||..|..... ...||+|+.++...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-PDVCPLCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCC-ccccccccceeeee
Confidence 4577776432 455544 599999999987543 23899999997643
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.65 E-value=0.1 Score=38.12 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=20.6
Q ss_pred cccccCCcC--CCeecC--CCCccccccHHhhhc--cCCCCCCCCCC
Q 019010 226 DPVTGNLMD--DAMILP--CGHSFGAAGVQHVIR--MKACYTCSRPV 266 (347)
Q Consensus 226 CPIClell~--dPVtl~--CGHsFC~~CL~~~le--~~~CP~Cr~~v 266 (347)
||+|.+.+. +--..| ||+-.|+-|..+.++ ...||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988773 222344 999999999999885 67999999864
No 74
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.062 Score=53.34 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred ccccccccccCCcCCCeecC-CCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
...-.||||+.--..|..+. .|-.||+.|+-.++. ...||+...+..
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 34457999999888888777 699999999999886 668998877654
No 75
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.79 E-value=0.14 Score=44.96 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=40.6
Q ss_pred cccccccccCCcCCCeecC----CCCccccccHHhhhc----cCCCCCCCCCCcCC
Q 019010 222 AILSDPVTGNLMDDAMILP----CGHSFGAAGVQHVIR----MKACYTCSRPVLED 269 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~----CGHsFC~~CL~~~le----~~~CP~Cr~~v~~~ 269 (347)
..+.|.||.+...+...|. ||-..|..|....|+ ...||.|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 6678999999988888775 999999999988886 46899999987643
No 76
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.16 Score=49.80 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=35.0
Q ss_pred ccccccC-CcCCCe----ecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCc
Q 019010 225 SDPVTGN-LMDDAM----ILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIA 272 (347)
Q Consensus 225 ~CPICle-ll~dPV----tl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~ 272 (347)
.||+|.. .+..|- +-+|+|..|.+|+.+.+. ...||.|...+.+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR 56 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence 4999974 233332 226999999999999885 56899999887755443
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.23 Score=50.81 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=31.9
Q ss_pred ccccccccccCCcCC--C-eecCCCCccccccHHhhhc---------cCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDD--A-MILPCGHSFGAAGVQHVIR---------MKACYTCSR 264 (347)
Q Consensus 221 ~e~L~CPIClell~d--P-Vtl~CGHsFC~~CL~~~le---------~~~CP~Cr~ 264 (347)
...+.|.||.+...- . +.++|+|.||+.|+..+.. ...||.+.-
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 345689999875532 2 2578999999999999884 246775544
No 78
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.10 E-value=0.23 Score=36.24 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=21.7
Q ss_pred cccccccCCcCCCeecC-CCCccccccHHhhhc------cCCCCCCCCC
Q 019010 224 LSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR------MKACYTCSRP 265 (347)
Q Consensus 224 L~CPIClell~dPVtl~-CGHsFC~~CL~~~le------~~~CP~Cr~~ 265 (347)
|.|||....+.-|+... |.|.-|-. +..++. ...||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 67999999999999765 99987743 333442 4579999763
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.47 E-value=0.087 Score=53.54 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=34.7
Q ss_pred cccccccccCCcC-CCe---ecCCCCccccccHHhhhc---cCCCCCCCC
Q 019010 222 AILSDPVTGNLMD-DAM---ILPCGHSFGAAGVQHVIR---MKACYTCSR 264 (347)
Q Consensus 222 e~L~CPIClell~-dPV---tl~CGHsFC~~CL~~~le---~~~CP~Cr~ 264 (347)
-.|.|..|.+.+. .|- .+||.|+|...|+..+++ ..+||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4578999998763 122 478999999999999986 679999994
No 80
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.94 E-value=0.097 Score=41.88 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=29.6
Q ss_pred cccccCCcCC-CeecC-CCCccccccHHhhhc----cCCCCCCCCCCc
Q 019010 226 DPVTGNLMDD-AMILP-CGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (347)
Q Consensus 226 CPIClell~d-PVtl~-CGHsFC~~CL~~~le----~~~CP~Cr~~v~ 267 (347)
||-|.-.=.+ |+++- |.|.|-.-||.+|+. ...||.||+...
T Consensus 34 Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 34 CPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4444432222 44443 999999999999996 358999998764
No 81
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=88.78 E-value=0.27 Score=39.70 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCCCccccccHHhhhcc-CCCCCCCCCCc
Q 019010 240 PCGHSFGAAGVQHVIRM-KACYTCSRPVL 267 (347)
Q Consensus 240 ~CGHsFC~~CL~~~le~-~~CP~Cr~~v~ 267 (347)
.|.|.|..-||.+|+.+ ..||.+++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 39999999999999984 48999998864
No 82
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=0.3 Score=47.04 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=32.5
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhh
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI 254 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~l 254 (347)
.+++...--|++|+..+.+||+++=||.||+.||..++
T Consensus 37 rDsiK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred ccccCCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 34445555789999999999999999999999999876
No 83
>PHA03096 p28-like protein; Provisional
Probab=87.07 E-value=0.25 Score=48.33 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=29.5
Q ss_pred cccccccCCcC-CCe------ecC-CCCccccccHHhhhc----cCCCCCCCCC
Q 019010 224 LSDPVTGNLMD-DAM------ILP-CGHSFGAAGVQHVIR----MKACYTCSRP 265 (347)
Q Consensus 224 L~CPIClell~-dPV------tl~-CGHsFC~~CL~~~le----~~~CP~Cr~~ 265 (347)
..|.||++... .++ +|+ |-|.||..|+..|.. ...||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 56999998443 222 344 999999999999984 3456666554
No 84
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.02 E-value=0.37 Score=48.44 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=37.1
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc---cCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRP 265 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le---~~~CP~Cr~~ 265 (347)
++.-.|-||-.-+.-...+||+|..|..|..+... .+.||.||..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 55667999998777667899999999999876553 7799999975
No 85
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.95 E-value=0.12 Score=59.01 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred CccccccccccccccCCcC-CCeecCCCCccccccHHhhhc-cCCCCCCCCC
Q 019010 216 SGDSLRAILSDPVTGNLMD-DAMILPCGHSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~-dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
+...+.....|+||++.+. .-.+..|||.+|..|+..|+. ...||.|...
T Consensus 1146 y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1146 YLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 3345566779999999998 677788999999999999997 6789999754
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.92 E-value=0.33 Score=39.15 Aligned_cols=31 Identities=19% Similarity=0.502 Sum_probs=24.5
Q ss_pred cccccccccCCcCCCe--ecCCCCccccccHHh
Q 019010 222 AILSDPVTGNLMDDAM--ILPCGHSFGAAGVQH 252 (347)
Q Consensus 222 e~L~CPIClell~dPV--tl~CGHsFC~~CL~~ 252 (347)
..-.|++|...+...+ +.||||.|...|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 3446999999887655 468999999999763
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=86.23 E-value=0.43 Score=43.07 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.4
Q ss_pred ccccccccCCcCCCeecCCC
Q 019010 223 ILSDPVTGNLMDDAMILPCG 242 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CG 242 (347)
..+||||++...++|.|.|.
T Consensus 2 d~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CccCceeccCCCceEEEEec
Confidence 46899999999999988765
No 88
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=86.04 E-value=0.11 Score=40.76 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=25.0
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
+.||.|...|. ..=+|.+|..|-..+.....||.|..++.
T Consensus 2 ~~CP~C~~~L~----~~~~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE----WQGGHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE----EETTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccE----EeCCEEECccccccceecccCCCcccHHH
Confidence 57999997654 22389999999988777778999998865
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=0.71 Score=51.02 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=32.6
Q ss_pred cccccccCCcCCCee-cCCCCccccccHHhhhccCCCCCCCC
Q 019010 224 LSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIRMKACYTCSR 264 (347)
Q Consensus 224 L~CPIClell~dPVt-l~CGHsFC~~CL~~~le~~~CP~Cr~ 264 (347)
-.|..|.-.|.-|++ ..|||+|...|+.+ ....||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~--~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLED--KEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhcc--CcccCCccch
Confidence 479999999998875 56999999999982 2468999976
No 90
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=85.07 E-value=0.77 Score=44.62 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=3.7
Q ss_pred cccCCCCc
Q 019010 16 VFQDDPLR 23 (347)
Q Consensus 16 ~~~~~~~~ 23 (347)
-|=|+-+|
T Consensus 191 cfCddHvr 198 (314)
T PF06524_consen 191 CFCDDHVR 198 (314)
T ss_pred eehhhhhh
Confidence 34444444
No 91
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=0.75 Score=46.77 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=32.7
Q ss_pred ccccccccc-CCcCCCe---ecCCCCccccccHHhhhc-------cCCCC--CCCCCCcCC
Q 019010 222 AILSDPVTG-NLMDDAM---ILPCGHSFGAAGVQHVIR-------MKACY--TCSRPVLED 269 (347)
Q Consensus 222 e~L~CPICl-ell~dPV---tl~CGHsFC~~CL~~~le-------~~~CP--~Cr~~v~~~ 269 (347)
....|.||. +...... +..|+|.||..|+.++++ ...|| .|...++..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence 355799999 4433212 355999999999999986 34676 565555533
No 92
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.30 E-value=0.54 Score=46.77 Aligned_cols=47 Identities=19% Similarity=0.430 Sum_probs=37.0
Q ss_pred ccccccccccccCCcC---CCeecCCCCccccccHHhhhc----cCCCCCCCCC
Q 019010 219 SLRAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR----MKACYTCSRP 265 (347)
Q Consensus 219 ~L~e~L~CPIClell~---dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~ 265 (347)
.....+.||+-.+.-. .|+++.|||..-..-+.+.-+ .+.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4467789999877654 589999999998888877654 6799999654
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.37 E-value=0.5 Score=46.87 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=31.8
Q ss_pred ccccccccCCcC-CCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMD-DAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~-dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
...|--|...+. --.+++|.|.||..|....- .+.||.|..++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~-dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS-DKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCc-cccCcCcccHHH
Confidence 456888876443 23468999999999975332 568999987764
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=0.93 Score=42.43 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=30.4
Q ss_pred cccccCCcCCCeecCCCC-ccccccHHhhhccCCCCCCCCCCc
Q 019010 226 DPVTGNLMDDAMILPCGH-SFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 226 CPIClell~dPVtl~CGH-sFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
|-+|.+--..-+.+||.| .+|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~---~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES---LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc---CccCCCCcChhh
Confidence 999998766666789999 589999654 346999987643
No 95
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=79.02 E-value=2.3 Score=49.92 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=41.9
Q ss_pred cccccccccC-CcC--CCeecCCCCccccccHHhhhc-----------cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 222 AILSDPVTGN-LMD--DAMILPCGHSFGAAGVQHVIR-----------MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 222 e~L~CPICle-ll~--dPVtl~CGHsFC~~CL~~~le-----------~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
..-.|-||.. .+. ..+.|-|+|.|...|..+.++ -..||+|..++. ...|+.|++-++.+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In------H~~LkDLldPiKel 3558 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN------HIVLKDLLDPIKEL 3558 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh------hHHHHHHHHHHHHH
Confidence 4457999974 332 345678999999999877764 148999988753 33556666666665
Q ss_pred H
Q 019010 288 E 288 (347)
Q Consensus 288 ~ 288 (347)
.
T Consensus 3559 ~ 3559 (3738)
T KOG1428|consen 3559 Y 3559 (3738)
T ss_pred H
Confidence 4
No 96
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.52 E-value=1.6 Score=42.26 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=59.7
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
.+.+-|.|-+++|++|++++-|-+|-+.=|..+++ ...=|+-+.++...++.||..|...|..|..+.
T Consensus 209 pd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 209 PDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred cchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 45567889999999999999999999999998886 456799999999999999999999998887754
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=75.76 E-value=0.88 Score=43.79 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=32.2
Q ss_pred ccccccccC--CcCCCeec---C-CCCccccccHHhhhc--cCCCC--CCCCCCc
Q 019010 223 ILSDPVTGN--LMDDAMIL---P-CGHSFGAAGVQHVIR--MKACY--TCSRPVL 267 (347)
Q Consensus 223 ~L~CPICle--ll~dPVtl---~-CGHsFC~~CL~~~le--~~~CP--~Cr~~v~ 267 (347)
.-.||||.. +|..-|.+ | |-|..|-+|+.+.+. ...|| -|...+.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 347999984 33333322 3 999999999999886 56898 7866544
No 98
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=74.08 E-value=1 Score=40.05 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.3
Q ss_pred eccccccCCCCCccc
Q 019010 53 VDRDRYFRPQPTMFT 67 (347)
Q Consensus 53 ~~~~~~~~~~~~~~~ 67 (347)
|.-|=||...+-.|+
T Consensus 77 vsL~~~~~~ppVtf~ 91 (149)
T PF03066_consen 77 VSLDGFEITPPVTFR 91 (149)
T ss_dssp EEEEEEEESSSEEEE
T ss_pred EEcCCcccCCCEEEE
Confidence 333445533344454
No 99
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=1.7 Score=36.73 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCCccccccHHhhhc-cCCCCCCCCC
Q 019010 241 CGHSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 241 CGHsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
|.|.|..-||.+|++ ...||+|.+.
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 999999999999998 4589999765
No 100
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=72.04 E-value=1.8 Score=42.29 Aligned_cols=40 Identities=28% Similarity=0.575 Sum_probs=32.2
Q ss_pred ccccccCCc----CCCeecCCCCccccccHHhhhc-cCCCCCCCC
Q 019010 225 SDPVTGNLM----DDAMILPCGHSFGAAGVQHVIR-MKACYTCSR 264 (347)
Q Consensus 225 ~CPIClell----~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~ 264 (347)
.||||.+.+ ..|..++|||..-..|+..... ...||+|..
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 499998755 3566788999988888887663 689999977
No 101
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.17 E-value=0.87 Score=45.08 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=33.4
Q ss_pred ccccccCCcC-CC-e-ecCCCCccccccHHhhhc------------------------cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMD-DA-M-ILPCGHSFGAAGVQHVIR------------------------MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~-dP-V-tl~CGHsFC~~CL~~~le------------------------~~~CP~Cr~~v~ 267 (347)
.|.||+--|. .| . .+.|-|.|...|+.+++. ...||+||..+.
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 7999997654 34 3 467999999999998872 137999999876
No 102
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.16 E-value=2.4 Score=46.79 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=34.1
Q ss_pred ccccccccccCCcCCCe----ecC---CCCccccccHHhhhc-------cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAM----ILP---CGHSFGAAGVQHVIR-------MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPV----tl~---CGHsFC~~CL~~~le-------~~~CP~Cr~~v~ 267 (347)
....+|++|..-+.+|+ ..+ |+|.||..||..|.. ...|+.|...|.
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 45567888887777754 233 999999999999984 346777766543
No 103
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=70.72 E-value=1.9 Score=44.60 Aligned_cols=7 Identities=43% Similarity=0.245 Sum_probs=3.3
Q ss_pred cccccCh
Q 019010 175 TVAEADS 181 (347)
Q Consensus 175 ~~~~~D~ 181 (347)
+..++|+
T Consensus 186 tP~LPDS 192 (458)
T PF10446_consen 186 TPELPDS 192 (458)
T ss_pred CCCCCCc
Confidence 4444444
No 104
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=4.2 Score=39.51 Aligned_cols=55 Identities=27% Similarity=0.491 Sum_probs=41.1
Q ss_pred ccccccccccccccCCcCCCe----ecCCCCccccccHHhhhccCCCCCCCCCCcCCCCc
Q 019010 217 GDSLRAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIA 272 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~ 272 (347)
.+.-+..+.|||-.-.|..-. ...|||.|-..-|.+.. ...|++|.+.+...+..
T Consensus 105 ~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 105 DDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cccccceeecccccceecceEEEEEEeccceeccHHHHHHhh-hccccccCCcccccCeE
Confidence 334467789999987776533 45699999988887765 56899999999865543
No 105
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.02 E-value=2.7 Score=43.14 Aligned_cols=6 Identities=50% Similarity=0.811 Sum_probs=2.8
Q ss_pred CCCCcc
Q 019010 34 DPGPKT 39 (347)
Q Consensus 34 ~~~~~~ 39 (347)
+|-|+|
T Consensus 203 ~skP~~ 208 (514)
T KOG3130|consen 203 DSKPDT 208 (514)
T ss_pred CCCchh
Confidence 444444
No 106
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=68.76 E-value=2.2 Score=44.17 Aligned_cols=8 Identities=13% Similarity=-0.558 Sum_probs=4.8
Q ss_pred CCcccccc
Q 019010 171 GAIVTVAE 178 (347)
Q Consensus 171 ~~~~~~~~ 178 (347)
...|+-.|
T Consensus 189 LPDSTDFV 196 (458)
T PF10446_consen 189 LPDSTDFV 196 (458)
T ss_pred CCCccccc
Confidence 45666666
No 107
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=68.50 E-value=4.1 Score=28.73 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=22.0
Q ss_pred cccccCCcCCCeecC---CCCccccccHHhhhcc---CCCCCC
Q 019010 226 DPVTGNLMDDAMILP---CGHSFGAAGVQHVIRM---KACYTC 262 (347)
Q Consensus 226 CPIClell~dPVtl~---CGHsFC~~CL~~~le~---~~CP~C 262 (347)
|.+|.++...-+.=+ |+-.+...|+..+++. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877666544 8888999999999862 259987
No 108
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=68.19 E-value=5.3 Score=43.30 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=47.7
Q ss_pred CCCCCccccccccccccccCCcCCCee-cCCCCccccccHHhhhc------cCCCCCCCCCCcCCCCcccHHHHHHHHHH
Q 019010 212 GISGSGDSLRAILSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 212 g~s~~~~~L~e~L~CPIClell~dPVt-l~CGHsFC~~CL~~~le------~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~ 284 (347)
........+.-.|.|||+...+.-|.. ..|.|.-|-.-+. ++. +..||+|...+..+.+.....+..++..+
T Consensus 295 d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~ 373 (636)
T KOG2169|consen 295 DSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSC 373 (636)
T ss_pred cccceeccceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhc
Confidence 333445566778899999876654443 3366654433221 111 57999999998888888877777666554
Q ss_pred HH
Q 019010 285 RR 286 (347)
Q Consensus 285 k~ 286 (347)
..
T Consensus 374 ~~ 375 (636)
T KOG2169|consen 374 QA 375 (636)
T ss_pred cC
Confidence 43
No 109
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=2.6 Score=39.06 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=32.1
Q ss_pred cccccccCCcCCC-----e--ecCCCCccccccHHhhhc-------c-----CCCCCCCCCCcCC
Q 019010 224 LSDPVTGNLMDDA-----M--ILPCGHSFGAAGVQHVIR-------M-----KACYTCSRPVLED 269 (347)
Q Consensus 224 L~CPIClell~dP-----V--tl~CGHsFC~~CL~~~le-------~-----~~CP~Cr~~v~~~ 269 (347)
-.|.||..+--+- + .+.||..|..-||..|++ + -.||.|..++..+
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3577776543221 1 256999999999999996 1 3799999987643
No 110
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.56 E-value=4.6 Score=41.67 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=35.3
Q ss_pred ccccccccccCCcCC-CeecCCCCccccccHHhhhc-------c--CCCC--CCCCCCc
Q 019010 221 RAILSDPVTGNLMDD-AMILPCGHSFGAAGVQHVIR-------M--KACY--TCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~d-PVtl~CGHsFC~~CL~~~le-------~--~~CP--~Cr~~v~ 267 (347)
.....|.||.+.+.. .+.+.|||.||..|+..++. . ..|| .|.+.+.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 455789999988775 55677999999999999884 1 3465 6666554
No 111
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=4.6 Score=42.06 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=49.1
Q ss_pred cccccccccc-cCCcCCCeecC--CCCccccccHHhhhccCCCCCCCCCCc-CCCCcccHHHHHHHHHHHHH
Q 019010 220 LRAILSDPVT-GNLMDDAMILP--CGHSFGAAGVQHVIRMKACYTCSRPVL-EDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 220 L~e~L~CPIC-lell~dPVtl~--CGHsFC~~CL~~~le~~~CP~Cr~~v~-~~~l~pN~~L~~LVe~~k~~ 287 (347)
+.+.+.|++| .+.|.+...+. |..+||..||.+.+....|+.|...-. -..+.++..++.........
T Consensus 216 ~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~~~~~~~p~~~r~~~n~~~a~ 287 (448)
T KOG0314|consen 216 LPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVLADDLLPPKTLRDTINRILAS 287 (448)
T ss_pred CCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcccccccCCchhhHHHHHHHHhh
Confidence 4677899999 77787777764 899999999999887677777766433 33456666666655554443
No 112
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=63.27 E-value=5 Score=45.23 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.8
Q ss_pred ceeeecc
Q 019010 49 KMFSVDR 55 (347)
Q Consensus 49 ~~~~~~~ 55 (347)
+|-.|+.
T Consensus 1373 ~l~vIe~ 1379 (1516)
T KOG1832|consen 1373 FLGVIEM 1379 (1516)
T ss_pred eEEEEec
Confidence 3334443
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=62.98 E-value=3.5 Score=41.74 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=22.4
Q ss_pred CCCccccccHHhhhc--------------cCCCCCCCCCCcCCC
Q 019010 241 CGHSFGAAGVQHVIR--------------MKACYTCSRPVLEDS 270 (347)
Q Consensus 241 CGHsFC~~CL~~~le--------------~~~CP~Cr~~v~~~~ 270 (347)
|.-..|..|+.+|+. ...||.||+++...+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 444568889999983 248999999987543
No 114
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=3.5 Score=47.74 Aligned_cols=12 Identities=50% Similarity=0.681 Sum_probs=6.1
Q ss_pred CCccccCCCCCC
Q 019010 76 PPQAREWSGNAT 87 (347)
Q Consensus 76 ~~~~~~~~~~~~ 87 (347)
|-+.|--+||.+
T Consensus 1702 prrrrllsgntt 1713 (3015)
T KOG0943|consen 1702 PRRRRLLSGNTT 1713 (3015)
T ss_pred chhhhhccCCcc
Confidence 344455566554
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.90 E-value=2.1 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=22.6
Q ss_pred cccccCCcCCCeecCCC-CccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 226 DPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 226 CPIClell~dPVtl~CG-HsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
|.-|-- .+--.+.|. |..|..||...+. +..||+|..+++.
T Consensus 5 CKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 5 CKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred Chhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 444542 233345565 7789999998886 6689999988754
No 116
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=60.56 E-value=5.6 Score=39.99 Aligned_cols=12 Identities=33% Similarity=0.687 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCC
Q 019010 92 DESDGEDDDVDD 103 (347)
Q Consensus 92 ~~~~~~~~~~dd 103 (347)
||||+||+++++
T Consensus 261 eE~e~Eee~~~~ 272 (348)
T KOG2652|consen 261 EEDENEEEDDDP 272 (348)
T ss_pred ccccccccccCc
Confidence 445555444433
No 117
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=59.98 E-value=13 Score=42.14 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=58.9
Q ss_pred cccccccccccCCcCCCeecC-CCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
..+.+.-|+-..+|.+||.+| -+++.|+.=|.+++- ..+=|.||.+++.+.+.++..|+.-+..+...+
T Consensus 867 vpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 867 VPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred CchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 467788999999999999999 999999999998874 445599999999999999999988887766544
No 118
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=59.89 E-value=4.1 Score=48.54 Aligned_cols=6 Identities=50% Similarity=1.204 Sum_probs=2.3
Q ss_pred CcccCC
Q 019010 322 RGVQFP 327 (347)
Q Consensus 322 kgvqfp 327 (347)
.|+-||
T Consensus 467 ggi~fp 472 (2849)
T PTZ00415 467 GGILFP 472 (2849)
T ss_pred cceecc
Confidence 333333
No 119
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=58.22 E-value=2.8 Score=36.85 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=24.8
Q ss_pred ccccccccCCcCC--Ce-ecCCC------CccccccHHhhhc
Q 019010 223 ILSDPVTGNLMDD--AM-ILPCG------HSFGAAGVQHVIR 255 (347)
Q Consensus 223 ~L~CPIClell~d--PV-tl~CG------HsFC~~CL~~~le 255 (347)
...|.||.+.+.+ -| .++|| |.||..|+.+|.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 3459999987765 33 35576 7899999999953
No 120
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=56.22 E-value=9 Score=34.73 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred cccccccccCCcCCCeecCCC--Cc---cccccHHhhhc---cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMILPCG--HS---FGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CG--Hs---FC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
....|-||.+-.. +..-||. .+ ....|+++|+. ...|+.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3446999987643 3445654 32 37899999995 568999998865
No 121
>PF14353 CpXC: CpXC protein
Probab=56.18 E-value=5.2 Score=33.92 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=25.1
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~v~ 267 (347)
++||.|...+.-.+-+.-.-..=..-....+. ...||.|+..+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 57999988776544333221111222233332 468999998875
No 122
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=52.04 E-value=6 Score=38.41 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=33.9
Q ss_pred ccccccccCCcCCCeecC-CCCccccccHHhhhc---cCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSR 264 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le---~~~CP~Cr~ 264 (347)
.++|||-..+...|+.-. |||.|-+.-|..++. +..||+-..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 458999999999998654 999999999998874 557885443
No 123
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.94 E-value=4.9 Score=39.81 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCccccccHHhhhc--------------cCCCCCCCCCCcCCC
Q 019010 241 CGHSFGAAGVQHVIR--------------MKACYTCSRPVLEDS 270 (347)
Q Consensus 241 CGHsFC~~CL~~~le--------------~~~CP~Cr~~v~~~~ 270 (347)
|....|++||.+|+. ...||.||+.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 555678899999872 458999999987543
No 124
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=51.53 E-value=16 Score=35.28 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=40.8
Q ss_pred ccccccccCCcCCCee-cCCCCccccccHHhhhc---cCCCC--CCCCCCcCCCCcccHHH
Q 019010 223 ILSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIR---MKACY--TCSRPVLEDSIAPNLSL 277 (347)
Q Consensus 223 ~L~CPIClell~dPVt-l~CGHsFC~~CL~~~le---~~~CP--~Cr~~v~~~~l~pN~~L 277 (347)
..+|||-+....-|+. ..|.|.|-+.-|...+. +.-|| .|.+.+....+.....|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 3589998887777764 45999999999998886 56788 67666666555555444
No 125
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.23 E-value=10 Score=37.48 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.5
Q ss_pred cccccccccCCcCCCeecCC----CCccccccHHhhhc
Q 019010 222 AILSDPVTGNLMDDAMILPC----GHSFGAAGVQHVIR 255 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~C----GHsFC~~CL~~~le 255 (347)
.-|.|.+|.+.|.|--...| .|-||-.|-...++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 45889999999998776666 59999999888775
No 126
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.48 E-value=12 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=21.7
Q ss_pred cccccCCcC--CCeecCCCC-----ccccccHHhhhc---cCCCCCC
Q 019010 226 DPVTGNLMD--DAMILPCGH-----SFGAAGVQHVIR---MKACYTC 262 (347)
Q Consensus 226 CPIClell~--dPVtl~CGH-----sFC~~CL~~~le---~~~CP~C 262 (347)
|-||++.-. .|++.||.- .....||.+|+. ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 567775432 257778652 347789999996 4578877
No 127
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=48.20 E-value=8 Score=43.14 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=34.5
Q ss_pred ccccccccccCCcC--CCee--cCCCCccccccHHhhhc--------cCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMD--DAMI--LPCGHSFGAAGVQHVIR--------MKACYTCSRP 265 (347)
Q Consensus 221 ~e~L~CPIClell~--dPVt--l~CGHsFC~~CL~~~le--------~~~CP~Cr~~ 265 (347)
...+.|.||.+.+. .||- ..|-|+|...||.+|.+ ...||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 45678999999775 3431 23889999999999984 4689999844
No 128
>PHA02862 5L protein; Provisional
Probab=48.00 E-value=12 Score=33.56 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred ccccccCCcCCCeecCCCC-----ccccccHHhhhc---cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMDDAMILPCGH-----SFGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~dPVtl~CGH-----sFC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
.|-||.+.-.+. .-||.- -....||.+|+. ...|+.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 589999865444 456543 246889999996 568999999875
No 129
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=25 Score=28.14 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=34.8
Q ss_pred cccccCCc----CCCeecCCCCccccccHHhhhccCCCCCCCCCCcCCCCcccHHH
Q 019010 226 DPVTGNLM----DDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSL 277 (347)
Q Consensus 226 CPIClell----~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~pN~~L 277 (347)
|--|-.-| .++++-.=.|+||..|....+. -.||-|.-.+....+.|...|
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~-g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRLH-GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc-CcCCCCCchhhcCcCChHHHH
Confidence 55555433 2444444457899999987774 489999998877766765544
No 130
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.87 E-value=12 Score=34.52 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCCchhhhh
Q 019010 91 TDESDGEDDDVDDDEDDDDVDE 112 (347)
Q Consensus 91 ~~~~~~~~~~~ddd~~d~~~~~ 112 (347)
++.+.+||+||.|+.||.+|+.
T Consensus 130 ~~~~~dEDdedvd~~dd~evda 151 (184)
T KOG4032|consen 130 GGSESDEDDEDVDEEDDEEVDA 151 (184)
T ss_pred CCCcccccccccccchhhhhcc
Confidence 3344444555555555555554
No 131
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.84 E-value=13 Score=38.85 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=39.6
Q ss_pred ccccccCCcCCCeecC-CCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 225 SDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 225 ~CPIClell~dPVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
.|.|..+...+||.-+ -||.|-++-|.+++. ...||+-..+++.+
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~e 48 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIE 48 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHH
Confidence 5999999999999877 999999999999986 77899998887743
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=41.66 E-value=30 Score=36.99 Aligned_cols=13 Identities=31% Similarity=0.366 Sum_probs=6.1
Q ss_pred eccccccCCCCCcc
Q 019010 53 VDRDRYFRPQPTMF 66 (347)
Q Consensus 53 ~~~~~~~~~~~~~~ 66 (347)
|.||= |.|.+..+
T Consensus 82 v~rd~-m~~~~~~s 94 (641)
T KOG0772|consen 82 VSRDV-MGPPRVSS 94 (641)
T ss_pred ccccc-cCCCCCcc
Confidence 44554 44444444
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=41.52 E-value=6.3 Score=38.23 Aligned_cols=42 Identities=12% Similarity=-0.072 Sum_probs=19.9
Q ss_pred cccccccCCcCCCeecCC-----CCccccccHHhhhc-cCCCCCCCCC
Q 019010 224 LSDPVTGNLMDDAMILPC-----GHSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 224 L~CPIClell~dPVtl~C-----GHsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
-.||||...-.-.+...= .|.+|.-|-..|.- ...||.|...
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 479999975443333322 35679999888864 4589999876
No 134
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=41.10 E-value=23 Score=31.66 Aligned_cols=8 Identities=0% Similarity=-0.363 Sum_probs=3.4
Q ss_pred cccccCCC
Q 019010 65 MFTEHHPE 72 (347)
Q Consensus 65 ~~~~~~~~ 72 (347)
+.+|.++.
T Consensus 36 G~~r~vL~ 43 (149)
T PF08595_consen 36 GSERSVLQ 43 (149)
T ss_pred CeeeeEee
Confidence 33444444
No 135
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=40.43 E-value=19 Score=39.26 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=6.1
Q ss_pred cCCCCCCCCCC
Q 019010 256 MKACYTCSRPV 266 (347)
Q Consensus 256 ~~~CP~Cr~~v 266 (347)
.+.||.|+..+
T Consensus 41 ~~fC~~CG~~~ 51 (645)
T PRK14559 41 EAHCPNCGAET 51 (645)
T ss_pred cccccccCCcc
Confidence 34566666554
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.89 E-value=20 Score=35.93 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=32.6
Q ss_pred cccccccCCc--CCCeec--CCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 224 LSDPVTGNLM--DDAMIL--PCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell--~dPVtl--~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
-.||+|.+.+ .+--.+ +|++..|..|+..... ...||.|+.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 4699999866 233334 4899989999887765 568999997654
No 137
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=39.44 E-value=10 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=20.2
Q ss_pred ccccccccCCcCCCeecCCCCccccccHHhhhc---cCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR---MKACYTCSRP 265 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHsFC~~CL~~~le---~~~CP~Cr~~ 265 (347)
.+.||.|.+.+... .++.-|...... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 57899999844321 122223333322 4579999753
No 138
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.94 E-value=15 Score=37.49 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=26.9
Q ss_pred ccccccccCCcC-----CCeecCCCCccccccHHhhhccC-CCCCC
Q 019010 223 ILSDPVTGNLMD-----DAMILPCGHSFGAAGVQHVIRMK-ACYTC 262 (347)
Q Consensus 223 ~L~CPIClell~-----dPVtl~CGHsFC~~CL~~~le~~-~CP~C 262 (347)
-..||+|.-.+. ..++-.|||-||+.|...|.... .|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 347999986542 34454599999999998887533 34433
No 139
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=37.73 E-value=16 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=16.6
Q ss_pred ccccccccccCCcCCCe---e-cCCCCccccccHHhhh
Q 019010 221 RAILSDPVTGNLMDDAM---I-LPCGHSFGAAGVQHVI 254 (347)
Q Consensus 221 ~e~L~CPIClell~dPV---t-l~CGHsFC~~CL~~~l 254 (347)
.+.-.|.+|...|.--. . -.||+.||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 44567999998773211 1 2499999999986543
No 140
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=37.72 E-value=19 Score=28.75 Aligned_cols=11 Identities=55% Similarity=0.864 Sum_probs=4.7
Q ss_pred CCCCCCCCCCC
Q 019010 93 ESDGEDDDVDD 103 (347)
Q Consensus 93 ~~~~~~~~~dd 103 (347)
++++||.++++
T Consensus 52 ~e~GEdl~~~e 62 (77)
T PF12253_consen 52 EEEGEDLDSDE 62 (77)
T ss_pred CCCCccccccc
Confidence 34444444433
No 141
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.76 E-value=36 Score=39.06 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=29.3
Q ss_pred ccccccccCCcCCCeecCCCC-----ccccccHHhhhccCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMDDAMILPCGH-----SFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGH-----sFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
...||-|.........-.||. .||..|-... ....||.|...+.
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~-~~y~CPKCG~El~ 674 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV-EEDECEKCGREPT 674 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC-CCCcCCCCCCCCC
Confidence 347999988754333334874 5899994332 2457999998876
No 142
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.51 E-value=16 Score=36.26 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=28.7
Q ss_pred ccccccccCCcCCCeec----CCC--CccccccHHhhhc-cCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMIL----PCG--HSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 223 ~L~CPIClell~dPVtl----~CG--HsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
.-.||||...-.-.++. .=| +.+|.-|-..|-- ...||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34799999754433322 233 4568899888864 4589999874
No 143
>PLN02189 cellulose synthase
Probab=35.32 E-value=26 Score=40.18 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccccccCCcC-----CCee--cCCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMD-----DAMI--LPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~-----dPVt--l~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
.|.||.+-+. ++-+ --|+--.|+.|.+--.+ ...||.|+....
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999998654 2222 12777899999964333 679999998876
No 144
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.70 E-value=29 Score=22.90 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=7.2
Q ss_pred cCCCCCCCCC
Q 019010 256 MKACYTCSRP 265 (347)
Q Consensus 256 ~~~CP~Cr~~ 265 (347)
...||+|...
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4578988764
No 145
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=30 Score=38.21 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=36.0
Q ss_pred cccccccccccCCcCCCee----------cCCCCcc--------------------ccccHHhhhc---------cCCCC
Q 019010 220 LRAILSDPVTGNLMDDAMI----------LPCGHSF--------------------GAAGVQHVIR---------MKACY 260 (347)
Q Consensus 220 L~e~L~CPIClell~dPVt----------l~CGHsF--------------------C~~CL~~~le---------~~~CP 260 (347)
+.+.-.|+-|++-+.||-. +.||-.| |..|...+.. ...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 3566789999988777642 4588666 9999988763 46899
Q ss_pred CCCCCCc
Q 019010 261 TCSRPVL 267 (347)
Q Consensus 261 ~Cr~~v~ 267 (347)
.|.-.+.
T Consensus 178 ~CGP~~~ 184 (750)
T COG0068 178 KCGPHLF 184 (750)
T ss_pred ccCCCeE
Confidence 9988765
No 146
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=31.26 E-value=49 Score=25.10 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=29.2
Q ss_pred ccccccCCcCCC--eecCCC--CccccccHHhhhccCCCCCCCCCCcCC
Q 019010 225 SDPVTGNLMDDA--MILPCG--HSFGAAGVQHVIRMKACYTCSRPVLED 269 (347)
Q Consensus 225 ~CPIClell~dP--Vtl~CG--HsFC~~CL~~~le~~~CP~Cr~~v~~~ 269 (347)
.|-.|...|-.. -..-|. .+||..|....+ ...||-|.-.+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l-~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML-NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh-cCcCcCCCCccccC
Confidence 477776654321 122244 379999999887 45899999877544
No 147
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.09 E-value=18 Score=40.59 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.8
Q ss_pred cccccccccCC-cCCCe-ecCCCCccccccHHhhhc
Q 019010 222 AILSDPVTGNL-MDDAM-ILPCGHSFGAAGVQHVIR 255 (347)
Q Consensus 222 e~L~CPIClel-l~dPV-tl~CGHsFC~~CL~~~le 255 (347)
..-.|.+|... +..|- ..+|||.|.+.||.+...
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 34479999874 44565 457999999999998763
No 148
>PLN02436 cellulose synthase A
Probab=30.88 E-value=34 Score=39.44 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=30.8
Q ss_pred ccccccCCcC-----CCeec--CCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~-----dPVtl--~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
.|-||.+-+. ++-+. -|+--.|+.|.+--.+ ...||.|+....
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 6999998653 22221 2888899999964333 679999998876
No 149
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.79 E-value=41 Score=28.15 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=18.3
Q ss_pred CCccccccHHhhhc----------cCCCCCCCCC
Q 019010 242 GHSFGAAGVQHVIR----------MKACYTCSRP 265 (347)
Q Consensus 242 GHsFC~~CL~~~le----------~~~CP~Cr~~ 265 (347)
.-.||..||..... ...||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 66799999876652 3579999874
No 150
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.22 E-value=19 Score=28.12 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=8.7
Q ss_pred ccccccHHhhhc
Q 019010 244 SFGAAGVQHVIR 255 (347)
Q Consensus 244 sFC~~CL~~~le 255 (347)
.||+.||.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 151
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=29.42 E-value=20 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=13.9
Q ss_pred CCCCccccccHHhhhccCC
Q 019010 240 PCGHSFGAAGVQHVIRMKA 258 (347)
Q Consensus 240 ~CGHsFC~~CL~~~le~~~ 258 (347)
.|++.||..|...|-...+
T Consensus 45 ~C~~~fC~~C~~~~H~~~~ 63 (64)
T smart00647 45 KCGFSFCFRCKVPWHSPVS 63 (64)
T ss_pred CCCCeECCCCCCcCCCCCC
Confidence 4899999999877643333
No 152
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=29.08 E-value=28 Score=39.72 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=5.3
Q ss_pred cCCCCCCC
Q 019010 81 EWSGNATS 88 (347)
Q Consensus 81 ~~~~~~~~ 88 (347)
-+++|.+.
T Consensus 308 sYDPNy~y 315 (1233)
T KOG1824|consen 308 SYDPNYNY 315 (1233)
T ss_pred ccCCCCCC
Confidence 35777775
No 153
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.04 E-value=31 Score=27.86 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=17.1
Q ss_pred ccccccCCcC-----CCeec--CCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMD-----DAMIL--PCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~-----dPVtl--~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
.|-||.+-.. ++.+. -|+--.|+.|..--.+ ...||.|+.+..
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 5999987542 22221 3777889999874433 679999997754
No 155
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=28.66 E-value=32 Score=28.41 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=27.2
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
-.|-||...+..+ ||.||..|..+ .-.|..|...+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk---kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK---KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc---cCcccccCCeec
Confidence 3699998765543 88999999653 348999998874
No 156
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.59 E-value=29 Score=34.62 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=28.8
Q ss_pred ccccccccCCcCCCee-c--CCC--CccccccHHhhhc-cCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMI-L--PCG--HSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 223 ~L~CPIClell~dPVt-l--~CG--HsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
.-.||+|...-.-.+. + .=| +.+|.-|-..|-- ...||.|...
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 4579999976543332 1 233 4568889888764 4589999863
No 157
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.37 E-value=32 Score=32.61 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=15.0
Q ss_pred ccccccccCCcC-CCeec--CCCCcc
Q 019010 223 ILSDPVTGNLMD-DAMIL--PCGHSF 245 (347)
Q Consensus 223 ~L~CPIClell~-dPVtl--~CGHsF 245 (347)
.|.||+|...|. .+-.+ ..+|+|
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCC
Confidence 378999999874 22233 356776
No 158
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.24 E-value=33 Score=21.80 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.1
Q ss_pred ccccccCCc
Q 019010 225 SDPVTGNLM 233 (347)
Q Consensus 225 ~CPIClell 233 (347)
.||-|...+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666543
No 159
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=11 Score=36.21 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=32.2
Q ss_pred cccccccCCcC------CCeecC--------CCCccccccHHhhhc--cCCCCCCCCC
Q 019010 224 LSDPVTGNLMD------DAMILP--------CGHSFGAAGVQHVIR--MKACYTCSRP 265 (347)
Q Consensus 224 L~CPIClell~------dPVtl~--------CGHsFC~~CL~~~le--~~~CP~Cr~~ 265 (347)
..|.||...+. .|..+. |||+.|..|+...+. ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 35888876554 466666 999999999998775 4589999864
No 160
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=31 Score=29.73 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=7.7
Q ss_pred cCCCCCCCCCCCCCCCC
Q 019010 81 EWSGNATSPSTDESDGE 97 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (347)
+++|-++-=++...+++
T Consensus 104 ~YDGWGTY~EdpnA~dd 120 (135)
T COG3076 104 EYDGWGTYFEDPNAEDD 120 (135)
T ss_pred eecCceeeccCCCcccc
Confidence 44455554444444443
No 161
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=26.27 E-value=43 Score=37.65 Aligned_cols=26 Identities=19% Similarity=0.269 Sum_probs=11.5
Q ss_pred ccccccccccccccCCc-----CCCeecCCC
Q 019010 217 GDSLRAILSDPVTGNLM-----DDAMILPCG 242 (347)
Q Consensus 217 ~~~L~e~L~CPIClell-----~dPVtl~CG 242 (347)
|+++...+...+...+| ..||++||-
T Consensus 537 ~P~l~~Lvllklv~~lFPTSD~~HpVVTPal 567 (840)
T PF04147_consen 537 WPSLSDLVLLKLVGTLFPTSDFRHPVVTPAL 567 (840)
T ss_pred CCChhHHHHHHHHHHhcCcccccCcchhHHH
Confidence 44444444444433332 345555543
No 162
>PF15234 LAT: Linker for activation of T-cells
Probab=25.82 E-value=74 Score=29.79 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=11.6
Q ss_pred CCCCcccccCCC-CCCCC
Q 019010 61 PQPTMFTEHHPE-RRDPP 77 (347)
Q Consensus 61 ~~~~~~~~~~~~-~~~~~ 77 (347)
||+++=-+.|++ |++.-
T Consensus 83 PQp~ggShrmpSSrqdsd 100 (230)
T PF15234_consen 83 PQPPGGSHRMPSSRQDSD 100 (230)
T ss_pred CCCCCCcccCcccccCCC
Confidence 787777777766 66543
No 163
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.72 E-value=35 Score=24.43 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=20.1
Q ss_pred ccccccCCcCC----CeecCCCCccccccHHhhh
Q 019010 225 SDPVTGNLMDD----AMILPCGHSFGAAGVQHVI 254 (347)
Q Consensus 225 ~CPIClell~d----PVtl~CGHsFC~~CL~~~l 254 (347)
.|.+|...|.- .--..||+.||..|.....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 48888765542 1123599999999987543
No 164
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=25.55 E-value=33 Score=31.69 Aligned_cols=6 Identities=67% Similarity=1.198 Sum_probs=2.1
Q ss_pred cccccc
Q 019010 43 TGFIDD 48 (347)
Q Consensus 43 ~~~~~~ 48 (347)
.||||.
T Consensus 27 ~gf~d~ 32 (211)
T PF04546_consen 27 DGFIDP 32 (211)
T ss_dssp EEE-S-
T ss_pred hhcccc
Confidence 455554
No 165
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=43 Score=36.77 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=34.2
Q ss_pred ccccccCCcCCCeecCCCC-ccccccHHhhhc-------cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMDDAMILPCGH-SFGAAGVQHVIR-------MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~dPVtl~CGH-sFC~~CL~~~le-------~~~CP~Cr~~v~ 267 (347)
.|+||-.-+.-++.-.||| ..|..|..+... ...||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 4999998888777788999 899999887663 346799988543
No 166
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=24.85 E-value=32 Score=33.48 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhhhhh
Q 019010 87 TSPSTDESDGEDDDVDDDEDDDDVDEAEK 115 (347)
Q Consensus 87 ~~~~~~~~~~~~~~~ddd~~d~~~~~~~~ 115 (347)
-++++||+++||+++.+++|..+++.+.+
T Consensus 43 ~g~~de~d~g~d~e~~~ee~~~~vdn~dd 71 (270)
T KOG4363|consen 43 KGTGDEEDYGEDEEWPNEEEEGEVDNGDD 71 (270)
T ss_pred cCCchhhhcCCccccCChhhccccccCcc
Confidence 36788888888888877777777766433
No 167
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.75 E-value=62 Score=38.07 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=27.3
Q ss_pred ccccccccCCcCCCeecCCCCc-----cccccHHhhhc----cCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMDDAMILPCGHS-----FGAAGVQHVIR----MKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~CGHs-----FC~~CL~~~le----~~~CP~Cr~~v~ 267 (347)
.+.||-|.........-.||+. +|..|=...-. ...||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 3578888875444333337754 37777554321 237999988765
No 168
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=24.47 E-value=56 Score=33.01 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=5.0
Q ss_pred CCccccCC
Q 019010 76 PPQAREWS 83 (347)
Q Consensus 76 ~~~~~~~~ 83 (347)
-|.|..|=
T Consensus 268 IP~AV~yf 275 (337)
T PTZ00007 268 IPYAVYWF 275 (337)
T ss_pred ccccHHhh
Confidence 46666675
No 169
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.40 E-value=66 Score=34.71 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCCCCCCccccccccccccccCCc
Q 019010 210 GCGISGSGDSLRAILSDPVTGNLM 233 (347)
Q Consensus 210 g~g~s~~~~~L~e~L~CPIClell 233 (347)
+|+.......+...+.|+.|...+
T Consensus 440 ~Cg~v~~r~el~~H~~C~~Cgk~f 463 (567)
T PLN03086 440 GCGIVLRVEEAKNHVHCEKCGQAF 463 (567)
T ss_pred cccceeeccccccCccCCCCCCcc
Confidence 455555555666777788886655
No 170
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.35 E-value=80 Score=35.69 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=34.7
Q ss_pred cccccccccC--CcCCCeecCCCCc-----cccccHHhhhc---cCCCCCCCCCCc
Q 019010 222 AILSDPVTGN--LMDDAMILPCGHS-----FGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPICle--ll~dPVtl~CGHs-----FC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
+.-+|.||.. .-.+|..-||..+ ..+.|+..|++ ...|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3457999973 5567877776643 37889999996 568999998876
No 171
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.96 E-value=43 Score=28.33 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.6
Q ss_pred CCCCCCCCCCcCC
Q 019010 257 KACYTCSRPVLED 269 (347)
Q Consensus 257 ~~CP~Cr~~v~~~ 269 (347)
..||.|+..+...
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3588887776544
No 172
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=23.95 E-value=25 Score=25.37 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=16.4
Q ss_pred cccc--ccCCcC-----CC--eecC-CCCccccccHHhh
Q 019010 225 SDPV--TGNLMD-----DA--MILP-CGHSFGAAGVQHV 253 (347)
Q Consensus 225 ~CPI--Clell~-----dP--Vtl~-CGHsFC~~CL~~~ 253 (347)
.||- |...+. .. |+=+ |++.||..|...|
T Consensus 20 ~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 20 WCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp --TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 6876 876553 12 4444 9999999998765
No 173
>PRK11595 DNA utilization protein GntX; Provisional
Probab=23.71 E-value=57 Score=30.41 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 019010 276 SLRAAVQAFRRE 287 (347)
Q Consensus 276 ~L~~LVe~~k~~ 287 (347)
.++.++..++-.
T Consensus 73 ~~r~lI~~~Ky~ 84 (227)
T PRK11595 73 PLSGLIHQLKFS 84 (227)
T ss_pred HHHHHHHHHHHC
Confidence 456666665543
No 174
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.33 E-value=32 Score=34.74 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=21.5
Q ss_pred CeecCCCCccccccHHhhhc--cCCCCCCCCCCcC
Q 019010 236 AMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE 268 (347)
Q Consensus 236 PVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~ 268 (347)
|.+..=+-.||..|-...+. ...|+.|+..+..
T Consensus 323 p~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCl 357 (378)
T KOG2807|consen 323 PETEYNGSRFCFACQGELLSSGRYRCESCKNVFCL 357 (378)
T ss_pred cccccCCCcceeeeccccCCCCcEEchhccceeec
Confidence 44444567789999444332 4578999887764
No 175
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=23.12 E-value=35 Score=35.33 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=24.6
Q ss_pred cccccccccCCcCCCeecC--CCCccccccHHhhh
Q 019010 222 AILSDPVTGNLMDDAMILP--CGHSFGAAGVQHVI 254 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~--CGHsFC~~CL~~~l 254 (347)
....||||.-++-....+. |..+.|..|+....
T Consensus 73 r~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 73 RKTECPICFLYYPSAKNLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccccCceeeeecccccchhhhhccchhhhheeccc
Confidence 3457999997766555443 99999999987654
No 176
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=42 Score=37.21 Aligned_cols=17 Identities=41% Similarity=0.693 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q 019010 84 GNATSPSTDESDGEDDD 100 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (347)
||.-||+-|+||+|++.
T Consensus 10 GNyiGpe~dsDee~~~~ 26 (971)
T KOG0468|consen 10 GNYIGPELDSDEEEDDS 26 (971)
T ss_pred ccccCCccCCccccccc
Confidence 56667777777766663
No 177
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.70 E-value=39 Score=36.40 Aligned_cols=21 Identities=14% Similarity=0.559 Sum_probs=13.7
Q ss_pred cccccceeeecccccc-CCCCC
Q 019010 44 GFIDDKMFSVDRDRYF-RPQPT 64 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~~~~ 64 (347)
.|+=+-||.|-.|.|= +|+..
T Consensus 335 qy~iEtlf~iRkdkfk~~p~v~ 356 (739)
T KOG2140|consen 335 QYMIETLFQIRKDKFKSHPAVL 356 (739)
T ss_pred HHHHHHHHHHHHHhhccCCccc
Confidence 3455667888888776 56553
No 178
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=22.53 E-value=48 Score=33.86 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=4.1
Q ss_pred cccccc
Q 019010 42 LTGFID 47 (347)
Q Consensus 42 ~~~~~~ 47 (347)
|+.||-
T Consensus 332 lG~fiP 337 (434)
T KOG3555|consen 332 LGAFIP 337 (434)
T ss_pred cccccC
Confidence 677774
No 179
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.08 E-value=37 Score=32.31 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=33.7
Q ss_pred cccccccCCcCCCee-cCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVt-l~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
..|.+|..++..-+. -.|+-.+...|++.++. ...||.|..-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 479999998776553 35777888999999986 568999965443
No 180
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.80 E-value=63 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=22.4
Q ss_pred cccccccCCc--CCCeec-C-CCCccccccHHh
Q 019010 224 LSDPVTGNLM--DDAMIL-P-CGHSFGAAGVQH 252 (347)
Q Consensus 224 L~CPIClell--~dPVtl-~-CGHsFC~~CL~~ 252 (347)
-.|++|.+.| .+.++. + ||-.|.+.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4699999988 555543 4 999999999764
No 181
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=21.49 E-value=38 Score=28.19 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=6.7
Q ss_pred ccccCC---CCcccccc
Q 019010 15 LVFQDD---PLRSFNCQ 28 (347)
Q Consensus 15 ~~~~~~---~~~~~~~~ 28 (347)
+|++|- -|| .+|.
T Consensus 5 yv~rDGq~q~lr-v~ce 20 (96)
T PF15387_consen 5 YVGRDGQPQRLR-VPCE 20 (96)
T ss_pred ccccCCCcceEE-Eeee
Confidence 455543 355 5664
No 182
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=35 Score=34.06 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.0
Q ss_pred ccccccccccCCcCCCeecC-CCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
...-.|-||...+.-|.... |+|-||.-|...|.+ ...||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 34457999999998887766 999999999998886 457887776543
No 183
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=62 Score=32.05 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=43.6
Q ss_pred cccccccCCcCCCeecC----CCCc--cccccHHhhhc-cCCCCCCCCCCcC--CCCcccHHHHHHHHHHHHHHHHhhhh
Q 019010 224 LSDPVTGNLMDDAMILP----CGHS--FGAAGVQHVIR-MKACYTCSRPVLE--DSIAPNLSLRAAVQAFRREEELQFYR 294 (347)
Q Consensus 224 L~CPIClell~dPVtl~----CGHs--FC~~CL~~~le-~~~CP~Cr~~v~~--~~l~pN~~L~~LVe~~k~~~~~~~~~ 294 (347)
-.||+|......-|+.- =|-. -|.-|...|.. ...|--|...-.. ..+... -...++.+. ..
T Consensus 186 ~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~~l~y~sl~s~-----E~A~vkAEt----C~ 256 (308)
T COG3058 186 QYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSKKLHYWSLESS-----ELAAVKAET----CG 256 (308)
T ss_pred ccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccCCccceeccch-----hhhHhhhhc----CC
Confidence 36999997654444322 2333 38899999886 3479999765221 111111 111222222 45
Q ss_pred hHHhhhhcccccCCC
Q 019010 295 TCKRKREKFDQDKGS 309 (347)
Q Consensus 295 ~Ck~h~E~Ldq~k~s 309 (347)
.|....+.+.|.|..
T Consensus 257 ~C~sYlKilyqekdp 271 (308)
T COG3058 257 DCNSYLKILYQEKDP 271 (308)
T ss_pred cHHHHHHHHHHhcCC
Confidence 688888888886543
No 184
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=20.91 E-value=96 Score=19.62 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=18.1
Q ss_pred ccccccCCcCCC--eecCCCCccccccHHhhhccCCCCCCCCCC
Q 019010 225 SDPVTGNLMDDA--MILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (347)
Q Consensus 225 ~CPIClell~dP--Vtl~CGHsFC~~CL~~~le~~~CP~Cr~~v 266 (347)
.|..|.+.+... +...=+..|...| +.|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C-------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC-------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC-------CCCcccCCcC
Confidence 377777766553 2222334444443 2566666554
No 185
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.36 E-value=35 Score=20.98 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 019010 258 ACYTCSR 264 (347)
Q Consensus 258 ~CP~Cr~ 264 (347)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 186
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.01 E-value=54 Score=34.56 Aligned_cols=10 Identities=10% Similarity=-0.293 Sum_probs=5.2
Q ss_pred cccccccCCc
Q 019010 224 LSDPVTGNLM 233 (347)
Q Consensus 224 L~CPIClell 233 (347)
+.||-|+.-+
T Consensus 27 ~yCp~CL~~~ 36 (483)
T PF05502_consen 27 YYCPNCLFEV 36 (483)
T ss_pred eECccccccC
Confidence 3455665544
Done!