Query 019010
Match_columns 347
No_of_seqs 242 out of 1374
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 99.6 3E-15 1E-19 118.4 5.8 70 219-288 10-80 (85)
2 1t1h_A Gspef-atpub14, armadill 99.5 3E-15 1E-19 114.9 4.1 69 219-287 4-74 (78)
3 3ztg_A E3 ubiquitin-protein li 99.5 9.2E-15 3.1E-19 115.5 6.7 72 217-288 7-83 (92)
4 2kre_A Ubiquitin conjugation f 99.5 6.3E-15 2.1E-19 120.3 5.5 70 218-287 24-94 (100)
5 1wgm_A Ubiquitin conjugation f 99.5 9.8E-15 3.3E-19 118.7 6.1 71 218-288 17-89 (98)
6 1jm7_B BARD1, BRCA1-associated 99.5 2.6E-14 9E-19 118.4 5.5 84 217-301 16-103 (117)
7 3fl2_A E3 ubiquitin-protein li 99.4 5E-14 1.7E-18 117.5 4.6 70 217-286 46-118 (124)
8 2yu4_A E3 SUMO-protein ligase 99.4 5.3E-14 1.8E-18 112.9 4.0 67 220-286 4-81 (94)
9 2y43_A E3 ubiquitin-protein li 99.4 6.8E-14 2.3E-18 112.2 4.6 73 217-289 16-90 (99)
10 3lrq_A E3 ubiquitin-protein li 99.4 3.8E-14 1.3E-18 114.6 2.7 73 216-288 15-90 (100)
11 2c2l_A CHIP, carboxy terminus 99.4 1E-13 3.5E-18 128.1 5.7 66 221-286 206-273 (281)
12 2egp_A Tripartite motif-contai 99.4 7.1E-15 2.4E-19 112.5 -1.7 66 215-280 4-77 (79)
13 2ckl_B Ubiquitin ligase protei 99.4 9.5E-14 3.3E-18 121.2 3.1 85 216-305 47-135 (165)
14 2f42_A STIP1 homology and U-bo 99.4 2.9E-13 1E-17 121.6 5.5 69 219-287 102-172 (179)
15 1z6u_A NP95-like ring finger p 99.4 2.6E-13 8.9E-18 117.9 4.7 69 218-286 73-144 (150)
16 2ckl_A Polycomb group ring fin 99.4 3.6E-13 1.2E-17 109.7 4.5 70 217-286 9-84 (108)
17 2csy_A Zinc finger protein 183 99.4 7.1E-13 2.4E-17 102.5 5.9 60 217-277 9-69 (81)
18 2djb_A Polycomb group ring fin 99.3 9.7E-13 3.3E-17 99.7 5.8 59 216-274 8-68 (72)
19 3l11_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 108.4 5.9 71 218-288 10-89 (115)
20 4ayc_A E3 ubiquitin-protein li 99.3 2.2E-13 7.6E-18 116.0 2.3 50 220-269 50-100 (138)
21 1jm7_A BRCA1, breast cancer ty 99.3 3.6E-13 1.2E-17 109.4 3.0 69 219-287 17-89 (112)
22 2ecw_A Tripartite motif-contai 99.3 1.6E-13 5.3E-18 105.6 0.5 64 217-280 13-83 (85)
23 2ecv_A Tripartite motif-contai 99.3 1.9E-13 6.6E-18 105.1 0.8 64 217-280 13-83 (85)
24 2yur_A Retinoblastoma-binding 99.3 2.5E-12 8.5E-17 98.2 6.0 52 216-267 8-63 (74)
25 2ecy_A TNF receptor-associated 99.3 3E-12 1E-16 95.3 5.0 55 217-271 9-65 (66)
26 2ysl_A Tripartite motif-contai 99.3 3.6E-12 1.2E-16 96.1 5.4 55 217-271 14-72 (73)
27 3hct_A TNF receptor-associated 99.3 2.1E-12 7.3E-17 107.0 4.4 69 217-285 12-82 (118)
28 3htk_C E3 SUMO-protein ligase 99.2 7.6E-12 2.6E-16 118.3 3.5 69 219-287 177-251 (267)
29 2d8t_A Dactylidin, ring finger 99.2 1.2E-11 4E-16 93.5 3.7 48 221-268 13-61 (71)
30 2ect_A Ring finger protein 126 99.2 3.8E-11 1.3E-15 91.8 5.9 58 217-274 9-70 (78)
31 2ysj_A Tripartite motif-contai 99.1 2.4E-11 8.3E-16 89.4 4.5 47 216-262 13-63 (63)
32 2ea6_A Ring finger protein 4; 99.1 1.4E-11 4.7E-16 91.4 3.2 52 217-268 9-68 (69)
33 2ct2_A Tripartite motif protei 99.1 3E-11 1E-15 93.8 5.1 53 217-269 9-69 (88)
34 1rmd_A RAG1; V(D)J recombinati 99.1 1.4E-11 4.9E-16 101.3 3.3 65 217-281 17-84 (116)
35 3ng2_A RNF4, snurf, ring finge 99.1 1.1E-11 3.7E-16 92.8 1.7 54 221-274 8-69 (71)
36 3hcs_A TNF receptor-associated 99.1 2.3E-11 7.8E-16 106.4 3.8 68 217-284 12-81 (170)
37 1g25_A CDK-activating kinase a 99.1 2.4E-11 8.2E-16 90.1 2.9 53 222-274 2-61 (65)
38 3knv_A TNF receptor-associated 99.1 8.9E-12 3.1E-16 107.2 0.6 69 216-284 24-103 (141)
39 2ecj_A Tripartite motif-contai 99.1 4.6E-11 1.6E-15 85.9 4.2 47 216-262 8-58 (58)
40 2xeu_A Ring finger protein 4; 99.0 2.6E-11 8.9E-16 88.6 0.7 52 222-273 2-61 (64)
41 1bor_A Transcription factor PM 99.0 1.3E-10 4.6E-15 84.4 3.6 47 221-269 4-50 (56)
42 1e4u_A Transcriptional repress 99.0 1.9E-10 6.6E-15 89.7 4.6 54 218-271 6-65 (78)
43 2ecn_A Ring finger protein 141 99.0 9.7E-11 3.3E-15 87.7 1.8 52 217-269 9-61 (70)
44 1iym_A EL5; ring-H2 finger, ub 99.0 4.6E-10 1.6E-14 80.1 4.4 47 221-267 3-54 (55)
45 1chc_A Equine herpes virus-1 r 98.9 3.9E-10 1.3E-14 83.8 3.8 46 222-267 4-51 (68)
46 2ecm_A Ring finger and CHY zin 98.9 4.8E-10 1.7E-14 79.8 3.8 46 222-267 4-54 (55)
47 2ep4_A Ring finger protein 24; 98.9 6.4E-10 2.2E-14 84.1 4.5 50 219-268 11-64 (74)
48 2kiz_A E3 ubiquitin-protein li 98.9 9.9E-10 3.4E-14 81.9 4.4 49 221-269 12-64 (69)
49 4ap4_A E3 ubiquitin ligase RNF 98.9 3.1E-10 1.1E-14 93.7 1.6 53 221-273 5-65 (133)
50 1x4j_A Ring finger protein 38; 98.9 7.4E-10 2.5E-14 84.2 3.0 48 221-268 21-72 (75)
51 2l0b_A E3 ubiquitin-protein li 98.9 7.1E-10 2.4E-14 87.9 2.8 48 221-268 38-89 (91)
52 4ic3_A E3 ubiquitin-protein li 98.9 5.7E-10 2E-14 85.4 1.9 48 218-268 19-67 (74)
53 2bay_A PRE-mRNA splicing facto 98.8 1.3E-09 4.5E-14 81.2 2.0 53 223-275 3-57 (61)
54 1v87_A Deltex protein 2; ring- 98.8 2.5E-09 8.5E-14 87.3 2.9 46 223-268 25-94 (114)
55 2ecg_A Baculoviral IAP repeat- 98.7 2.4E-09 8.4E-14 81.9 2.2 47 219-268 21-68 (75)
56 4ap4_A E3 ubiquitin ligase RNF 98.7 1.9E-09 6.4E-14 88.9 0.1 54 221-274 70-131 (133)
57 2y1n_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 101.6 3.4 49 221-269 330-380 (389)
58 2ecl_A Ring-box protein 2; RNF 98.6 1.4E-08 4.8E-13 78.9 3.2 48 222-269 14-77 (81)
59 2ea5_A Cell growth regulator w 98.6 3.2E-08 1.1E-12 75.0 5.0 45 221-268 13-58 (68)
60 2yho_A E3 ubiquitin-protein li 98.5 1.3E-08 4.3E-13 79.3 1.0 46 219-267 14-60 (79)
61 1wim_A KIAA0161 protein; ring 98.5 1.2E-08 4.2E-13 81.0 0.5 44 222-265 4-61 (94)
62 3t6p_A Baculoviral IAP repeat- 98.5 3.4E-08 1.1E-12 96.7 2.8 48 218-268 290-338 (345)
63 2vje_A E3 ubiquitin-protein li 98.5 4.3E-08 1.5E-12 73.1 2.2 46 222-267 7-56 (64)
64 2vje_B MDM4 protein; proto-onc 98.4 5.2E-08 1.8E-12 72.4 2.0 46 222-267 6-55 (63)
65 3dpl_R Ring-box protein 1; ubi 98.4 1.9E-07 6.5E-12 76.8 3.6 46 222-267 36-100 (106)
66 2d8s_A Cellular modulator of i 98.1 2.6E-06 9E-11 66.6 5.6 49 221-269 13-71 (80)
67 4a0k_B E3 ubiquitin-protein li 98.0 6.5E-07 2.2E-11 75.1 0.0 45 223-267 48-111 (117)
68 3m62_A Ubiquitin conjugation f 97.6 4.5E-05 1.5E-09 83.0 5.7 71 218-288 886-958 (968)
69 2ct0_A Non-SMC element 1 homol 97.6 7.9E-05 2.7E-09 57.6 5.4 46 222-267 14-63 (74)
70 3vk6_A E3 ubiquitin-protein li 97.1 0.0002 6.9E-09 58.5 2.3 43 225-267 3-48 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 96.8 0.00063 2.2E-08 50.2 2.9 46 222-267 5-58 (60)
72 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00047 1.6E-08 67.7 2.0 46 222-267 307-372 (381)
73 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0026 9E-08 50.3 1.4 32 222-253 2-36 (101)
74 3nw0_A Non-structural maintena 93.2 0.062 2.1E-06 49.7 3.9 46 223-268 180-229 (238)
75 3i2d_A E3 SUMO-protein ligase 92.1 0.092 3.1E-06 51.8 3.8 65 220-284 246-316 (371)
76 4fo9_A E3 SUMO-protein ligase 91.0 0.14 4.8E-06 50.3 3.8 63 220-283 212-281 (360)
77 2cs3_A Protein C14ORF4, MY039 81.6 1.7 5.7E-05 34.2 4.3 35 221-255 13-51 (93)
78 2ko5_A Ring finger protein Z; 78.0 0.88 3E-05 36.7 1.7 49 220-269 25-74 (99)
79 2jne_A Hypothetical protein YF 68.8 0.54 1.8E-05 38.1 -1.6 40 224-267 33-72 (101)
80 1wd2_A Ariadne-1 protein homol 57.3 2.4 8.2E-05 30.9 0.2 32 224-255 7-46 (60)
81 1x4u_A Zinc finger, FYVE domai 54.8 7.6 0.00026 29.7 2.7 36 217-252 8-47 (84)
82 1ayz_A UBC2, ubiquitin-conjuga 52.4 3.3 0.00011 36.0 0.3 7 81-87 95-101 (169)
83 2jrp_A Putative cytoplasmic pr 52.1 2 7E-05 33.5 -1.0 40 224-267 3-42 (81)
84 3mjh_B Early endosome antigen 51.3 2.1 7.2E-05 28.1 -0.9 16 222-237 4-19 (34)
85 2ayu_A Nucleosome assembly pro 51.1 3.2 0.00011 41.4 0.0 6 77-82 354-359 (417)
86 2iu1_A EIF5, eukaryotic transl 50.9 7 0.00024 35.3 2.2 7 105-111 167-173 (208)
87 1weo_A Cellulose synthase, cat 49.3 14 0.00048 29.4 3.4 44 224-267 17-69 (93)
88 1m3v_A FLIN4, fusion of the LI 48.3 7.9 0.00027 31.2 2.0 49 221-269 30-82 (122)
89 2ct7_A Ring finger protein 31; 48.2 6.3 0.00022 30.3 1.3 30 224-253 26-61 (86)
90 1y02_A CARP2, FYVE-ring finger 47.6 2.5 8.6E-05 35.1 -1.2 44 221-264 17-65 (120)
91 1joc_A EEA1, early endosomal a 45.6 9.9 0.00034 31.4 2.2 33 221-253 67-103 (125)
92 2jmo_A Parkin; IBR, E3 ligase, 44.8 7.7 0.00026 29.5 1.3 37 223-260 25-74 (80)
93 2lv9_A Histone-lysine N-methyl 42.2 28 0.00097 27.3 4.3 42 222-264 27-75 (98)
94 2lri_C Autoimmune regulator; Z 39.4 29 0.001 25.5 3.7 42 223-266 12-60 (66)
95 3mpx_A FYVE, rhogef and PH dom 39.0 6.4 0.00022 38.0 0.0 34 221-254 373-410 (434)
96 1z2q_A LM5-1; membrane protein 38.3 19 0.00064 27.5 2.6 38 216-253 14-55 (84)
97 2xqn_T Testin, TESS; metal-bin 38.3 15 0.00051 29.3 2.1 47 221-268 28-75 (126)
98 2gmg_A Hypothetical protein PF 37.8 11 0.00037 30.8 1.2 30 233-266 65-94 (105)
99 2yw8_A RUN and FYVE domain-con 37.6 15 0.00051 27.9 1.9 33 221-253 17-53 (82)
100 1rut_X Flinc4, fusion protein 35.6 7.6 0.00026 33.6 -0.1 48 221-268 30-81 (188)
101 3t7l_A Zinc finger FYVE domain 35.5 19 0.00063 28.0 2.2 34 221-254 18-55 (90)
102 2rgt_A Fusion of LIM/homeobox 33.8 28 0.00094 29.4 3.2 45 221-266 31-75 (169)
103 1wfk_A Zinc finger, FYVE domai 33.4 19 0.00064 27.9 1.9 32 222-253 8-43 (88)
104 1x62_A C-terminal LIM domain p 33.1 46 0.0016 24.2 4.0 39 222-267 14-52 (79)
105 2jtn_A LIM domain-binding prot 31.5 33 0.0011 29.2 3.4 48 221-269 85-132 (182)
106 2xjy_A Rhombotin-2; oncoprotei 31.5 18 0.00062 28.9 1.6 48 221-268 27-78 (131)
107 3bbo_G Ribosomal protein L4; l 31.3 10 0.00034 36.2 0.0 12 35-46 183-194 (293)
108 2cup_A Skeletal muscle LIM-pro 31.2 18 0.00062 27.5 1.5 47 221-268 31-78 (101)
109 1dvp_A HRS, hepatocyte growth 31.2 16 0.00055 32.5 1.3 32 222-253 160-195 (220)
110 3lqh_A Histone-lysine N-methyl 31.0 19 0.00066 31.7 1.8 42 225-266 4-64 (183)
111 4g9i_A Hydrogenase maturation 29.8 23 0.00079 37.8 2.4 47 221-267 104-189 (772)
112 2fiy_A Protein FDHE homolog; F 29.7 11 0.00037 36.1 -0.1 43 223-265 182-231 (309)
113 1vfy_A Phosphatidylinositol-3- 29.5 26 0.00089 25.9 2.0 30 224-253 12-45 (73)
114 1wil_A KIAA1045 protein; ring 27.4 64 0.0022 25.4 3.9 42 222-264 14-75 (89)
115 3zyq_A Hepatocyte growth facto 26.4 27 0.00092 31.4 1.9 31 223-253 164-198 (226)
116 1iml_A CRIP, cysteine rich int 25.8 52 0.0018 23.7 3.1 45 221-266 25-71 (76)
117 1z60_A TFIIH basal transcripti 25.8 36 0.0012 24.8 2.1 38 225-262 17-58 (59)
118 3fyb_A Protein of unknown func 25.4 18 0.0006 29.3 0.4 12 244-255 41-52 (104)
119 2o35_A Hypothetical protein DU 25.3 18 0.00061 29.4 0.4 12 244-255 42-53 (105)
120 2jr6_A UPF0434 protein NMA0874 24.7 29 0.00098 25.9 1.5 16 219-234 4-19 (68)
121 1f62_A Transcription factor WS 23.5 40 0.0014 22.9 2.0 41 225-265 2-50 (51)
122 1oy3_D Transcription factor in 23.4 25 0.00085 30.2 1.1 12 72-83 246-257 (282)
123 2pv0_B DNA (cytosine-5)-methyl 23.2 63 0.0022 31.8 4.0 43 224-266 94-149 (386)
124 3vth_A Hydrogenase maturation 23.1 28 0.00095 37.2 1.5 47 221-267 109-194 (761)
125 2eps_A POZ-, at HOOK-, and zin 22.9 65 0.0022 21.0 3.0 36 221-267 10-52 (54)
126 1mm2_A MI2-beta; PHD, zinc fin 22.8 66 0.0023 22.9 3.1 42 222-265 8-56 (61)
127 2k16_A Transcription initiatio 22.8 28 0.00097 25.6 1.1 46 221-266 16-69 (75)
128 1wep_A PHF8; structural genomi 21.8 77 0.0026 23.6 3.5 45 222-267 11-65 (79)
129 2epr_A POZ-, at HOOK-, and zin 21.5 52 0.0018 20.8 2.2 16 221-236 10-25 (48)
130 3ttc_A HYPF, transcriptional r 20.4 23 0.00077 37.3 0.2 46 221-266 15-99 (657)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.56 E-value=3e-15 Score=118.39 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=64.2
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
.+.+.+.||||+++|.+||+++|||+||+.||..|+. ...||.|+.++....+.+|..|+.+++.+....
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999999999996 678999999999899999999999998887654
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.53 E-value=3e-15 Score=114.87 Aligned_cols=69 Identities=19% Similarity=0.445 Sum_probs=62.5
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
.+.+.+.||||+++|.+|++++|||+||+.||.+|+. ...||.|+..+....+.+|..|+.+++.+...
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES 74 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999996 56899999999988999999999999887753
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.53 E-value=9.2e-15 Score=115.50 Aligned_cols=72 Identities=28% Similarity=0.522 Sum_probs=63.5
Q ss_pred ccccccccccccccCCcCCCeecC-CCCccccccHHhhhc---cCCCCCCCCCC-cCCCCcccHHHHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPV-LEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le---~~~CP~Cr~~v-~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
...+.+.+.||||+++|.+|++++ |||+||..||..|+. ...||.||..+ ....+.+|..|..+++.++...
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 345678899999999999999999 999999999999985 36899999997 5678999999999998887754
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.53 E-value=6.3e-15 Score=120.26 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=63.9
Q ss_pred cccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
..+...+.||||+++|.+||+++|||+||+.||.+|+. ...||.|+.++....+.+|..|+.+++.+...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999996 67899999999999999999999999877654
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.52 E-value=9.8e-15 Score=118.71 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=64.0
Q ss_pred cccccccccccccCCcCCCeecCCC-CccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CG-HsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
..+.+.+.||||+++|.+||+++|| |+||+.||.+|+. ...||.|+.++....+.+|..|+.+|+.+....
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 3457889999999999999999999 9999999999996 668999999999999999999999998776543
No 6
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=2.6e-14 Score=118.37 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=67.0
Q ss_pred ccccccccccccccCCcCCCeec-CCCCccccccHHhhhccCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHHHhh---
Q 019010 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEELQF--- 292 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~~~~--- 292 (347)
...+.+.+.||||+++|.+|+++ +|||+||..||..|+. ..||.|+..+....+.+|..|..+++.+........
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~~~~~~~ 94 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLLHDNE 94 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCccccccccHHHHHHHHHHHHHHHHHhhcc
Confidence 34567889999999999999999 8999999999999997 789999999988899999999999998887664321
Q ss_pred hhhHHhhhh
Q 019010 293 YRTCKRKRE 301 (347)
Q Consensus 293 ~~~Ck~h~E 301 (347)
...|..|.+
T Consensus 95 ~~~c~~h~~ 103 (117)
T 1jm7_B 95 LSDLKEDKP 103 (117)
T ss_dssp CCC------
T ss_pred ccccccccc
Confidence 234555554
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.44 E-value=5e-14 Score=117.52 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=61.5
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcC-CCCcccHHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE-DSIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~-~~l~pN~~L~~LVe~~k~ 286 (347)
...+...+.||||+++|.+|++++|||+||..||..|+. ...||.||..+.. ..+.+|..|..+++.+..
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 345577889999999999999999999999999999996 4589999999986 788999999999977654
No 8
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.3e-14 Score=112.92 Aligned_cols=67 Identities=19% Similarity=0.421 Sum_probs=59.1
Q ss_pred cccccccccccCCcCCCeecC-CCCccccccHHhhhcc-------CCCCC--CCCC-CcCCCCcccHHHHHHHHHHHH
Q 019010 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRM-------KACYT--CSRP-VLEDSIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le~-------~~CP~--Cr~~-v~~~~l~pN~~L~~LVe~~k~ 286 (347)
+...+.||||+++|.+||+++ |||+||+.||..|+.. ..||+ |+.. +....+.+|..|+.+|+.++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 356789999999999999996 9999999999999962 48999 8877 888899999999999977654
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.43 E-value=6.8e-14 Score=112.23 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=65.1
Q ss_pred ccccccccccccccCCcCCCeec-CCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREEE 289 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~~ 289 (347)
...+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ...||.||..+....+.+|..|..+++.++....
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 34556788999999999999998 8999999999999997 5689999999998889999999999999887663
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=3.8e-14 Score=114.65 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=64.8
Q ss_pred CccccccccccccccCCcCCCee-cCCCCccccccHHhhhc-c-CCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIR-M-KACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVt-l~CGHsFC~~CL~~~le-~-~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
....+.+.+.|+||+++|.+|++ ++|||+||..||.+|+. . ..||.||.++....+..+..+..+++.+..+.
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred ccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 34567788999999999999999 99999999999999997 3 58999999999889999999988888877664
No 11
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.42 E-value=1e-13 Score=128.07 Aligned_cols=66 Identities=18% Similarity=0.389 Sum_probs=59.8
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHHH
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~ 286 (347)
...+.||||+++|.+||+++|||+||+.||.+|+. ...||.|+.++....+.+|..|+.+|+.+..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 57789999999999999999999999999999996 3459999999998899999999999976654
No 12
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=7.1e-15 Score=112.52 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=55.9
Q ss_pred CCccccccccccccccCCcCCCeecCCCCccccccHHhhhc--------cCCCCCCCCCCcCCCCcccHHHHHH
Q 019010 215 GSGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--------MKACYTCSRPVLEDSIAPNLSLRAA 280 (347)
Q Consensus 215 ~~~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--------~~~CP~Cr~~v~~~~l~pN~~L~~L 280 (347)
.....+.+.+.|+||++.+.+|++++|||+||..||..|+. ...||.||..+....+.+|..|.++
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 34456678899999999999999999999999999999985 3589999999988878877766443
No 13
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.39 E-value=9.5e-14 Score=121.20 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=60.0
Q ss_pred CccccccccccccccCCcCCCeec-CCCCccccccHHhhhc--cCCCCCCCCCCc-CCCCcccHHHHHHHHHHHHHHHHh
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR--MKACYTCSRPVL-EDSIAPNLSLRAAVQAFRREEELQ 291 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le--~~~CP~Cr~~v~-~~~l~pN~~L~~LVe~~k~~~~~~ 291 (347)
....+...+.||||++.|.+|+++ +|||+||..||..|+. ...||.||..+. ...+.++..|..++..+....
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~--- 123 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR--- 123 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC------
T ss_pred chhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch---
Confidence 345567888999999999999998 8999999999999996 568999999985 567889999999998886643
Q ss_pred hhhhHHhhhhcccc
Q 019010 292 FYRTCKRKREKFDQ 305 (347)
Q Consensus 292 ~~~~Ck~h~E~Ldq 305 (347)
..|..|.+.+..
T Consensus 124 --~~~~~~~e~~~~ 135 (165)
T 2ckl_B 124 --DEYEAHQERVLA 135 (165)
T ss_dssp --------------
T ss_pred --hHHHHHHHHHHH
Confidence 235666655433
No 14
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.37 E-value=2.9e-13 Score=121.55 Aligned_cols=69 Identities=20% Similarity=0.415 Sum_probs=62.1
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
.+...+.||||+++|.+||+++|||+||+.||..|+. ...||.|+.++....+.||..|+.+++.+...
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999996 34699999999988999999999999877653
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=117.91 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=61.3
Q ss_pred cccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCC-CCcccHHHHHHHHHHHH
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLED-SIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~-~l~pN~~L~~LVe~~k~ 286 (347)
..+.+.+.|+||+++|.+|++++|||+||..||..|+. ...||+||..+... .+.+|..|..+++.+..
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 34567789999999999999999999999999999996 34899999999877 88999999999987754
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=3.6e-13 Score=109.75 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=61.4
Q ss_pred ccccccccccccccCCcCCCeec-CCCCccccccHHhhhc-cCCCCCCCCCCcCC----CCcccHHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLED----SIAPNLSLRAAVQAFRR 286 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~----~l~pN~~L~~LVe~~k~ 286 (347)
...+.+.+.|+||++++.+|+++ +|||+||..||..|+. ...||.|+..+... .+.+|..|..+++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 34567889999999999999998 9999999999999997 57899999998865 67889999999988755
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=102.53 Aligned_cols=60 Identities=17% Similarity=0.360 Sum_probs=50.9
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSL 277 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L 277 (347)
.+.....+.|+||++.+.+|++++|||+||..||..|+. ...||+||..+. ..+.++..|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHH
Confidence 344567789999999999999999999999999999997 678999999986 556666544
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.7e-13 Score=99.73 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=50.9
Q ss_pred CccccccccccccccCCcCCCeec-CCCCccccccHHhhhc-cCCCCCCCCCCcCCCCccc
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN 274 (347)
....+...+.|+||++.+.+|+++ +|||+||..||..|+. ...||+||..+...++..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 345567889999999999999997 8999999999999997 6789999999987766543
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.34 E-value=8.8e-13 Score=108.41 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=59.6
Q ss_pred cccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcC-------CCCcccHHHHHHHHHHHHHH
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE-------DSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~-------~~l~pN~~L~~LVe~~k~~~ 288 (347)
..+.+.+.|+||++++.+|++++|||+||..||.+|+. ...||.||..+.. ..+..+..|..+++.+....
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~ 89 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRE 89 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHH
Confidence 34467889999999999999999999999999999985 5689999999863 56778888888887765443
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=2.2e-13 Score=116.00 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=44.8
Q ss_pred cccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
+...+.|+||++.|.+|++++|||+||..||..|+. ...||.||.++...
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456788999999999999999999999999999997 66899999998643
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=3.6e-13 Score=109.45 Aligned_cols=69 Identities=16% Similarity=0.364 Sum_probs=59.9
Q ss_pred ccccccccccccCCcCCCeecCCCCccccccHHhhhcc----CCCCCCCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM----KACYTCSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~----~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
.+...+.|+||++.+.+|++++|||+||..||..|+.. ..||.|+..+....+.++..+..+++.+...
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999963 4899999999988888888887787777654
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=1.6e-13 Score=105.64 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=54.8
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc-------cCCCCCCCCCCcCCCCcccHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVLEDSIAPNLSLRAA 280 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-------~~~CP~Cr~~v~~~~l~pN~~L~~L 280 (347)
...+...+.|+||++.+.+|++++|||+||..||..|+. ...||.||..+....+.+|..|.++
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345677889999999999999999999999999999985 3589999999998888887766443
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-13 Score=105.11 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=54.8
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc-------cCCCCCCCCCCcCCCCcccHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVLEDSIAPNLSLRAA 280 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-------~~~CP~Cr~~v~~~~l~pN~~L~~L 280 (347)
...+...+.|+||++.+.+|++++|||+||..||..|+. ...||.||..+....+.+|..|..+
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 345677889999999999999999999999999999985 4689999999998888887765443
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=98.21 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=45.8
Q ss_pred CccccccccccccccCCcCCCeecC-CCCccccccHHhhhcc---CCCCCCCCCCc
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRM---KACYTCSRPVL 267 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le~---~~CP~Cr~~v~ 267 (347)
....+.+.+.|+||+++|.+|++++ |||+||..||..|+.. ..||+||..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3445678899999999999999999 9999999999999962 58999999865
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=95.30 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=47.6
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCC
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l 271 (347)
...+.+.+.|+||++.+.+|++++|||+||..||.+|+. ...||.||..+....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 344567889999999999999999999999999999994 5689999999876543
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=96.09 Aligned_cols=55 Identities=18% Similarity=0.445 Sum_probs=47.8
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCCCCCCcCCCC
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSI 271 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~Cr~~v~~~~l 271 (347)
...+.+.+.|+||++.+.+|++++|||+||..||..|+. ...||+||..+....+
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345677889999999999999999999999999999995 4589999999876543
No 27
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.27 E-value=2.1e-12 Score=106.98 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=59.7
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAFR 285 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k 285 (347)
...+.+.+.|+||++++.+|++++|||+||..||..|+. ...||.||..+....+.++..+..++..+.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 345678899999999999999999999999999999996 348999999999888888888877775543
No 28
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.17 E-value=7.6e-12 Score=118.30 Aligned_cols=69 Identities=19% Similarity=0.374 Sum_probs=61.5
Q ss_pred ccccccccccccCCcCCCeec-CCCCccccccHHhhhc---cCCCCC--CCCCCcCCCCcccHHHHHHHHHHHHH
Q 019010 219 SLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR---MKACYT--CSRPVLEDSIAPNLSLRAAVQAFRRE 287 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le---~~~CP~--Cr~~v~~~~l~pN~~L~~LVe~~k~~ 287 (347)
.....+.||||+++|.+||++ .|||+||+.||..|++ ...||+ |+..+...++.+|..|.++++.++..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 347888999999999999985 8999999999999996 358999 99999999999999999999887553
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=93.48 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=43.5
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
...+.|+||++.+.+|++++|||.||..||..|+. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 56678999999999999999999999999999986 5689999998764
No 30
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=3.8e-11 Score=91.79 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=47.2
Q ss_pred ccccccccccccccCCcCCC---eecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCccc
Q 019010 217 GDSLRAILSDPVTGNLMDDA---MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dP---Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN 274 (347)
...+...+.|+||++.|..+ +.++|+|.||..||.+|++ ...||+||..+....+.++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 33446678899999999866 4568999999999999997 5689999999987665543
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=89.40 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=41.4
Q ss_pred CccccccccccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCC
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~C 262 (347)
....+.+.+.|+||++.+.+|++++|||+||..||.+|++ ...||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3445678899999999999999999999999999999995 3589998
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=91.42 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=45.0
Q ss_pred ccccccccccccccCCcCCC-------eecCCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 217 GDSLRAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dP-------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
...+...+.|+||++.+.+| +.++|||.||..||..|+. ...||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34456788999999999887 8899999999999999996 6689999998753
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=93.85 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=46.2
Q ss_pred ccccccccccccccCCcCC----CeecCCCCccccccHHhhhcc----CCCCCCCCCCcCC
Q 019010 217 GDSLRAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIRM----KACYTCSRPVLED 269 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~d----PVtl~CGHsFC~~CL~~~le~----~~CP~Cr~~v~~~ 269 (347)
...+.+.+.|+||++.+.+ |++++|||+||..||..|+.. ..||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3455778899999999998 999999999999999999962 6899999988654
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=1.4e-11 Score=101.30 Aligned_cols=65 Identities=14% Similarity=0.294 Sum_probs=53.0
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcc-cHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAP-NLSLRAAV 281 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~p-N~~L~~LV 281 (347)
...+.+.+.||||++++.+|++++|||+||..||.+|+. ...||.||..+....+.+ +..+..++
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i 84 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred HHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHH
Confidence 345677889999999999999999999999999999996 468999999998766543 44444444
No 35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=1.1e-11 Score=92.82 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=47.1
Q ss_pred ccccccccccCCcCCC-------eecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCccc
Q 019010 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 221 ~e~L~CPIClell~dP-------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN 274 (347)
.+.+.|+||++.+.+| +.++|||+||..||.+|+. ...||.||..+....+.+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 4667899999999988 8899999999999999996 6799999999987766553
No 36
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=106.42 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=59.0
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCcccHHHHHHHHHH
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~ 284 (347)
...+.+.+.||||+++|.+|++++|||+||..||.+|+. ...||.||..+....+.++..+..++..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 345678899999999999999999999999999999996 45999999999988888888887766543
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=2.4e-11 Score=90.12 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=45.0
Q ss_pred cccccccccC-CcCCC----eecCCCCccccccHHhhhc--cCCCCCCCCCCcCCCCccc
Q 019010 222 AILSDPVTGN-LMDDA----MILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 222 e~L~CPICle-ll~dP----Vtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l~pN 274 (347)
+.+.||||++ ++.+| ++++|||+||..||.+|+. ...||.||..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 3567999999 99999 4689999999999999974 4689999999987776654
No 38
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=8.9e-12 Score=107.24 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=54.8
Q ss_pred CccccccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCc---------CCCCcccHHHHHHHHHH
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVL---------EDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~---------~~~l~pN~~L~~LVe~~ 284 (347)
....+.+.+.|+||+++|.+|++++|||+||+.||.+|+. ...||.||..+. ...+.++..+.+++..+
T Consensus 24 ~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 24 LGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp TGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 3456788999999999999999999999999999999996 348999998753 22345676666665443
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=85.94 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=40.9
Q ss_pred CccccccccccccccCCcCCCeecCCCCccccccHHhhhc----cCCCCCC
Q 019010 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le----~~~CP~C 262 (347)
....+.+.+.|+||++.+.+|++++|||+||..||.+|+. ...||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445677889999999999999999999999999999964 4689988
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=2.6e-11 Score=88.62 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=44.8
Q ss_pred cccccccccCCcCCC-------eecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcc
Q 019010 222 AILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (347)
Q Consensus 222 e~L~CPIClell~dP-------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~p 273 (347)
+.+.|+||++.+.+| +.++|||.||..||.+|++ ...||.||..+....+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 356799999999887 7889999999999999996 678999999988765544
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.3e-10 Score=84.40 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=41.2
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~ 269 (347)
.+.+.|+||++.+.+|++++|||+||..||..+ ...||.||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~--~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS--GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS--SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC--CCCCCcCCcEeecC
Confidence 456789999999999999999999999999873 56899999988643
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=1.9e-10 Score=89.73 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=43.7
Q ss_pred cccccccccccccCCc--CCCeecC--CCCccccccHHhhhc--cCCCCCCCCCCcCCCC
Q 019010 218 DSLRAILSDPVTGNLM--DDAMILP--CGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (347)
Q Consensus 218 ~~L~e~L~CPIClell--~dPVtl~--CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~~l 271 (347)
..+.+.+.||||++.+ .+++.++ |||+||+.||.+++. ...||.||.++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3457788999999988 4556665 999999999999884 5689999999875543
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.7e-11 Score=87.73 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=45.0
Q ss_pred ccccccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
...+...+.|+||++.+.+ ++++|||.||..||.+|+. ...||.||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3445677899999999999 9999999999999999987 67899999988744
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=4.6e-10 Score=80.08 Aligned_cols=47 Identities=30% Similarity=0.472 Sum_probs=40.8
Q ss_pred ccccccccccCCcCC---CeecC-CCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDD---AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~d---PVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
.+...|+||++.+.+ ++.++ |||.||..||.+|++ ...||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999887 78887 999999999999997 668999998764
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.95 E-value=3.9e-10 Score=83.83 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=40.9
Q ss_pred cccccccccCCcCCC-eecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDA-MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dP-Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
....|+||++.+.+| +.++|||.||..||.+|++ ...||.||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 445799999999997 7789999999999999997 678999999876
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.94 E-value=4.8e-10 Score=79.82 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=39.7
Q ss_pred cccccccccCCcCC----CeecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~d----PVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
....|+||++.+.+ ++.++|||.||..||.+|+. ...||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34679999999866 77889999999999999996 678999998764
No 47
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.4e-10 Score=84.10 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=42.4
Q ss_pred ccccccccccccCCcCCCeec---CCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 219 SLRAILSDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl---~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
.+.....|+||++.+..+..+ +|+|.||..||.+|++ ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345677899999999877654 8999999999999997 5689999998763
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.90 E-value=9.9e-10 Score=81.95 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=41.2
Q ss_pred ccccccccccCCcC---CCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMD---DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~---dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
.....|+||++.+. .++.++|||.||..||..|+. ...||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999874 457789999999999999996 66899999987643
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=3.1e-10 Score=93.67 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=46.2
Q ss_pred ccccccccccCCcCCC-------eecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcc
Q 019010 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAP 273 (347)
Q Consensus 221 ~e~L~CPIClell~dP-------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~p 273 (347)
...+.|+||++.+.+| ++++|||+||..||.+|++ ...||.|+..+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 4567899999999998 8999999999999999996 568999999988665544
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=7.4e-10 Score=84.21 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=41.8
Q ss_pred ccccccccccCCcCCC---eecCCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDDA---MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~dP---Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
.....|+||++.+..+ +.++|+|.||..||.+|++ ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999998877 6789999999999999996 6689999998764
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.87 E-value=7.1e-10 Score=87.93 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=41.7
Q ss_pred ccccccccccCCcCC---CeecCCCCccccccHHhhhc-cCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~d---PVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~ 268 (347)
.....|+||++.+.. +++++|||.||..||..|+. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999998877 77899999999999999997 5689999998753
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.86 E-value=5.7e-10 Score=85.44 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=42.7
Q ss_pred cccccccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCCcC
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
..+.+.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 345677899999999999999999999 999999987 689999998763
No 53
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.79 E-value=1.3e-09 Score=81.24 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=46.8
Q ss_pred ccccccccCCcCCCeec-CCCCccccccHHhhhc-cCCCCCCCCCCcCCCCcccH
Q 019010 223 ILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (347)
Q Consensus 223 ~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~ 275 (347)
.+.||||+++|.+||++ +|||+||+.||.+|+. ...||+++.++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 46799999999999999 8999999999999996 45799999999888877653
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.77 E-value=2.5e-09 Score=87.29 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=38.9
Q ss_pred ccccccccCCcCCCe------------------ecCCCCccccccHHhhhc------cCCCCCCCCCCcC
Q 019010 223 ILSDPVTGNLMDDAM------------------ILPCGHSFGAAGVQHVIR------MKACYTCSRPVLE 268 (347)
Q Consensus 223 ~L~CPIClell~dPV------------------tl~CGHsFC~~CL~~~le------~~~CP~Cr~~v~~ 268 (347)
...|+||++.|.+|+ .++|+|.||..||..|+. ...||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 347999999997765 678999999999999993 4589999998763
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.4e-09 Score=81.88 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=41.1
Q ss_pred ccccccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCCcC
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
.+.+.+.|+||++.+.+|+.++|||. ||..|+.. ...||+||.++..
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---CSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---CCCCccCCceecC
Confidence 44667789999999999999999999 99999975 3689999998864
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.69 E-value=1.9e-09 Score=88.95 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=46.7
Q ss_pred ccccccccccCCcCCC-------eecCCCCccccccHHhhhc-cCCCCCCCCCCcCCCCccc
Q 019010 221 RAILSDPVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (347)
Q Consensus 221 ~e~L~CPIClell~dP-------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN 274 (347)
...+.|+||++.+.+| +.++|||.||..||.+|++ ...||+||..+...++.+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 4667899999999887 8889999999999999997 6799999999987766543
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.63 E-value=1.1e-08 Score=101.59 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=43.4
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhc--cCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~~~ 269 (347)
.....|+||++.+.+|+.++|||.||..|+..|+. ...||.||..+...
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34478999999999999999999999999999986 57899999988743
No 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=78.94 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=39.3
Q ss_pred cccccccccCCcCC--------------CeecC-CCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 222 AILSDPVTGNLMDD--------------AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 222 e~L~CPIClell~d--------------PVtl~-CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
+...|+||++.|.+ ++.++ |+|.|+..||.+|+. ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45679999998876 45555 999999999999997 56899999987643
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.2e-08 Score=74.96 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=39.9
Q ss_pred ccccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
.....|+||++...+++.++|||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---CCCCCCCCcchhc
Confidence 456789999999999999999999 99999985 4689999998863
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.55 E-value=1.3e-08 Score=79.27 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=41.0
Q ss_pred ccccccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCCc
Q 019010 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 219 ~L~e~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
.+.+...|+||++.+.+++.++|||. ||..|+..+. .||.||..+.
T Consensus 14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~---~CP~Cr~~i~ 60 (79)
T 2yho_A 14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ---SCPVCRSRVE 60 (79)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS---BCTTTCCBCC
T ss_pred cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC---cCCCCCchhh
Confidence 34566789999999999999999999 9999998764 8999999886
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.2e-08 Score=80.99 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=37.5
Q ss_pred cccccccccCCcCCCeec---CCCCccccccHHhhhc---------cCCCCC--CCCC
Q 019010 222 AILSDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR---------MKACYT--CSRP 265 (347)
Q Consensus 222 e~L~CPIClell~dPVtl---~CGHsFC~~CL~~~le---------~~~CP~--Cr~~ 265 (347)
..+.|+||++.+..|+++ +|||.||..||..+++ ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999988765 6999999999999985 147999 9987
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.50 E-value=3.4e-08 Score=96.66 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=42.8
Q ss_pred cccccccccccccCCcCCCeecCCCCc-cccccHHhhhccCCCCCCCCCCcC
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CGHs-FC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
..+.+.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||.++..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence 345677899999999999999999999 999999987 689999998763
No 63
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.47 E-value=4.3e-08 Score=73.10 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=40.7
Q ss_pred cccccccccCCcCCCeec--CCCCc-cccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl--~CGHs-FC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
+...|+||++...+++.+ +|||. ||..|+.+|+. ...||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 455799999999999987 99999 89999999886 568999999875
No 64
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.45 E-value=5.2e-08 Score=72.45 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=40.2
Q ss_pred cccccccccCCcCCCeec--CCCCc-cccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl--~CGHs-FC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
....|+||++...+++.+ +|||. ||..|+.++++ ...||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345799999999999887 99998 99999999885 568999999875
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.36 E-value=1.9e-07 Score=76.79 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=38.8
Q ss_pred cccccccccCCcCCC------------------eecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDA------------------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dP------------------Vtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
..-.|+||++.|.++ +.++|+|.|+..||.+|+. ...||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456799999988865 3468999999999999997 568999999864
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.6e-06 Score=66.56 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=40.3
Q ss_pred ccccccccccCCc--CCCeecCCC-----CccccccHHhhhc---cCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLM--DDAMILPCG-----HSFGAAGVQHVIR---MKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell--~dPVtl~CG-----HsFC~~CL~~~le---~~~CP~Cr~~v~~~ 269 (347)
.....|.||++.+ .++++++|. |.|...||.+|+. ...||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3456799999866 468888996 9999999999996 25899999998643
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.03 E-value=6.5e-07 Score=75.05 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=0.4
Q ss_pred ccccccccCCcCCC-----------------e-ecCCCCccccccHHhhhc-cCCCCCCCCCCc
Q 019010 223 ILSDPVTGNLMDDA-----------------M-ILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (347)
Q Consensus 223 ~L~CPIClell~dP-----------------V-tl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~ 267 (347)
.-.|+||++.|.++ + .++|+|.|+..||.+|+. ...||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45799999988763 2 247999999999999997 568999999864
No 68
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.61 E-value=4.5e-05 Score=82.99 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=62.7
Q ss_pred cccccccccccccCCcCCCeecCCC-CccccccHHhhhc-cCCCCCCCCCCcCCCCcccHHHHHHHHHHHHHH
Q 019010 218 DSLRAILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNLSLRAAVQAFRREE 288 (347)
Q Consensus 218 ~~L~e~L~CPIClell~dPVtl~CG-HsFC~~CL~~~le-~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~k~~~ 288 (347)
...++.+.|||.+++|.|||+++.| ++|-+.+|.+|+. ...||.-+.++....+.||..|+.+|+.+....
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 3457789999999999999999998 6999999999996 668999999999999999999999997665543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=7.9e-05 Score=57.59 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=37.7
Q ss_pred cccccccccCCcCCCeec-CCCCccccccHHhhhcc---CCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRM---KACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl-~CGHsFC~~CL~~~le~---~~CP~Cr~~v~ 267 (347)
..-.|.||..++..-+.- .|+|.|...||.+|++. ..||.|+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 445799999988754443 69999999999999973 58999998875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.08 E-value=0.0002 Score=58.49 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=35.8
Q ss_pred ccccccCCcCCC-eecCCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 225 SDPVTGNLMDDA-MILPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 225 ~CPIClell~dP-Vtl~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
.|++|.-.+..- .++||.|.||..|+..|.+ ...||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 599998776543 4689999999999999874 579999999886
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.82 E-value=0.00063 Score=50.15 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=37.3
Q ss_pred cccccccccCCcCCCeecCCC--C---ccccccHHhhhc---cCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMILPCG--H---SFGAAGVQHVIR---MKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CG--H---sFC~~CL~~~le---~~~CP~Cr~~v~ 267 (347)
....|.||+....++..+||. + .|...||.+|+. ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345699999877778888854 4 789999999995 468999998865
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.72 E-value=0.00047 Score=67.68 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=36.3
Q ss_pred cccccccccCCcCC----Ce----ecCCCCccccccHHhhhcc------------CCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDD----AM----ILPCGHSFGAAGVQHVIRM------------KACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~d----PV----tl~CGHsFC~~CL~~~le~------------~~CP~Cr~~v~ 267 (347)
....|+||...+.+ |. ...|+|.|...||.+|++. ..||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44569999988765 21 2369999999999999961 37999999876
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.81 E-value=0.0026 Score=50.34 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=27.5
Q ss_pred cccccccccC-CcCCCee--cCCCCccccccHHhh
Q 019010 222 AILSDPVTGN-LMDDAMI--LPCGHSFGAAGVQHV 253 (347)
Q Consensus 222 e~L~CPICle-ll~dPVt--l~CGHsFC~~CL~~~ 253 (347)
+.+.|+||.+ ++.+|+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 3578999996 4788888 899999999999973
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.16 E-value=0.062 Score=49.68 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=37.3
Q ss_pred ccccccccCCcCCCeecC-CCCccccccHHhhhc---cCCCCCCCCCCcC
Q 019010 223 ILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR---MKACYTCSRPVLE 268 (347)
Q Consensus 223 ~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le---~~~CP~Cr~~v~~ 268 (347)
...|.||.+++..-+.-+ |+|.|...|+..|++ ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 457999999887655444 999999999999986 3489999987653
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.092 Score=51.77 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred cccccccccccCCcCCCeecC-CCCcccccc--HHhhhc---cCCCCCCCCCCcCCCCcccHHHHHHHHHH
Q 019010 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAG--VQHVIR---MKACYTCSRPVLEDSIAPNLSLRAAVQAF 284 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~-CGHsFC~~C--L~~~le---~~~CP~Cr~~v~~~~l~pN~~L~~LVe~~ 284 (347)
+.-.|.|||....|..|+... |.|.-|-.- +..... ...||+|...+...+|..+..+..++...
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 355688999999999999765 999966543 222211 57999999999999999998887776543
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.04 E-value=0.14 Score=50.27 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred cccccccccccCCcCCCeecC-CCCccccccHHhhhc------cCCCCCCCCCCcCCCCcccHHHHHHHHH
Q 019010 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIR------MKACYTCSRPVLEDSIAPNLSLRAAVQA 283 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~-CGHsFC~~CL~~~le------~~~CP~Cr~~v~~~~l~pN~~L~~LVe~ 283 (347)
+.-.|.|||....|..|+... |.|.-|-.- ..++. ...||+|...+...+|..+..+..++..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 455678999999999999765 999966432 22221 5699999999999999999888777754
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=81.59 E-value=1.7 Score=34.24 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=28.9
Q ss_pred ccccccccccCCcCCCeecCC----CCccccccHHhhhc
Q 019010 221 RAILSDPVTGNLMDDAMILPC----GHSFGAAGVQHVIR 255 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~C----GHsFC~~CL~~~le 255 (347)
...|.|.+|.+-|.+.-...| .|.||-.|-...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 577899999999988665554 69999999988875
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.01 E-value=0.88 Score=36.70 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=35.7
Q ss_pred cccccccccccCCcCCCeecCCCCccccccHHhhhc-cCCCCCCCCCCcCC
Q 019010 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (347)
Q Consensus 220 L~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le-~~~CP~Cr~~v~~~ 269 (347)
+-.-+.|..|....+. .+.=..|.+|..||...+. +..||+|..++..+
T Consensus 25 ~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC-eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3445679999865552 3333568999999998886 66899999887643
No 79
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=68.77 E-value=0.54 Score=38.11 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=30.3
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
+.||+|...|.. .=++.+|..|-..+.....||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhccccCcchhhHHH
Confidence 789999976652 2345569999887766778999998875
No 80
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.26 E-value=2.4 Score=30.94 Aligned_cols=32 Identities=13% Similarity=0.087 Sum_probs=21.7
Q ss_pred cccccccCCcCC-----CeecC---CCCccccccHHhhhc
Q 019010 224 LSDPVTGNLMDD-----AMILP---CGHSFGAAGVQHVIR 255 (347)
Q Consensus 224 L~CPIClell~d-----PVtl~---CGHsFC~~CL~~~le 255 (347)
-.||-|..++.. -|+-. |++.||+.|+..|..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 358988876642 33333 788888888877664
No 81
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.77 E-value=7.6 Score=29.70 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=24.1
Q ss_pred ccccccccccccccCCcCCCe----ecCCCCccccccHHh
Q 019010 217 GDSLRAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQH 252 (347)
Q Consensus 217 ~~~L~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~ 252 (347)
|..-.+...|.+|...|.--. --.||.+||..|...
T Consensus 8 W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 333345567999998774211 134999999999754
No 82
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=52.40 E-value=3.3 Score=35.99 Aligned_cols=7 Identities=14% Similarity=0.610 Sum_probs=3.6
Q ss_pred cCCCCCC
Q 019010 81 EWSGNAT 87 (347)
Q Consensus 81 ~~~~~~~ 87 (347)
.|++..+
T Consensus 95 ~WsP~~~ 101 (169)
T 1ayz_A 95 RWTPTYD 101 (169)
T ss_dssp TCCTTCC
T ss_pred CCCCcCc
Confidence 4665544
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.09 E-value=2 Score=33.52 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=22.0
Q ss_pred cccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
+.||.|...|.. .=++.+|..|-..+.....||.|.+++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCCcccCcchhhHHH
Confidence 468888765532 1123346666554444346777776653
No 84
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=51.33 E-value=2.1 Score=28.13 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=10.7
Q ss_pred cccccccccCCcCCCe
Q 019010 222 AILSDPVTGNLMDDAM 237 (347)
Q Consensus 222 e~L~CPIClell~dPV 237 (347)
+.+.||+|+..|..+-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4577888877666553
No 85
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=51.06 E-value=3.2 Score=41.41 Aligned_cols=6 Identities=50% Similarity=1.464 Sum_probs=2.4
Q ss_pred CccccC
Q 019010 77 PQAREW 82 (347)
Q Consensus 77 ~~~~~~ 82 (347)
|++-.|
T Consensus 354 P~AV~y 359 (417)
T 2ayu_A 354 PRAVDW 359 (417)
T ss_dssp TTHHHH
T ss_pred ccHHHH
Confidence 334444
No 86
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=50.95 E-value=7 Score=35.29 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=2.7
Q ss_pred CCchhhh
Q 019010 105 EDDDDVD 111 (347)
Q Consensus 105 ~~d~~~~ 111 (347)
|+|.++.
T Consensus 167 d~~~e~~ 173 (208)
T 2iu1_A 167 DENIEVV 173 (208)
T ss_dssp SCHHHHH
T ss_pred cccccee
Confidence 3334433
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.32 E-value=14 Score=29.41 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.0
Q ss_pred cccccccCCcC-----CCee--cCCCCccccccHHhhhc--cCCCCCCCCCCc
Q 019010 224 LSDPVTGNLMD-----DAMI--LPCGHSFGAAGVQHVIR--MKACYTCSRPVL 267 (347)
Q Consensus 224 L~CPIClell~-----dPVt--l~CGHsFC~~CL~~~le--~~~CP~Cr~~v~ 267 (347)
-.|-||.+-.- ++.+ --|+-..|+.|+.--.+ ...||.|+.++.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 46999987542 1211 23888899999874443 679999999875
No 88
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.31 E-value=7.9 Score=31.16 Aligned_cols=49 Identities=8% Similarity=-0.077 Sum_probs=37.4
Q ss_pred ccccccccccCCcCC---CeecCCCCccccccHHhhhccC-CCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~d---PVtl~CGHsFC~~CL~~~le~~-~CP~Cr~~v~~~ 269 (347)
..-|.|..|...|.+ .....=|..||..|..+.+... .|..|..+|...
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 356889999998863 3445578889999998877532 799999988744
No 89
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=48.18 E-value=6.3 Score=30.27 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=21.1
Q ss_pred cccccccCCcC-----CCeecC-CCCccccccHHhh
Q 019010 224 LSDPVTGNLMD-----DAMILP-CGHSFGAAGVQHV 253 (347)
Q Consensus 224 L~CPIClell~-----dPVtl~-CGHsFC~~CL~~~ 253 (347)
.-||-|..++. .+|+-+ |++.||..|-..|
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 34888877542 234554 9999999998776
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.64 E-value=2.5 Score=35.15 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccccccccccCCcCCCe----ecCCCCccccccHHhhhc-cCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHVIR-MKACYTCSR 264 (347)
Q Consensus 221 ~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~le-~~~CP~Cr~ 264 (347)
.....|..|...|.--. --.||..||..|...... .+.|-.|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 34457999998775211 135999999999775543 456777744
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.58 E-value=9.9 Score=31.41 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=23.0
Q ss_pred ccccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 221 RAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 221 ~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
.....|.+|...|.--. --.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 44557999998775211 1349999999997653
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=44.78 E-value=7.7 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=24.7
Q ss_pred cccccc--ccCCcC-----CCeec------CCCCccccccHHhhhccCCCC
Q 019010 223 ILSDPV--TGNLMD-----DAMIL------PCGHSFGAAGVQHVIRMKACY 260 (347)
Q Consensus 223 ~L~CPI--Clell~-----dPVtl------~CGHsFC~~CL~~~le~~~CP 260 (347)
...||- |...+. ..++= .|++.||..|...|-. ..|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECS 74 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Cccc
Confidence 445877 776543 12333 5899999999988755 5554
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=42.17 E-value=28 Score=27.32 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=27.1
Q ss_pred cccccccccCCcCCCeecC---CCCccccccHHhhhc----cCCCCCCCC
Q 019010 222 AILSDPVTGNLMDDAMILP---CGHSFGAAGVQHVIR----MKACYTCSR 264 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~---CGHsFC~~CL~~~le----~~~CP~Cr~ 264 (347)
+.+.| ||.....+-.++. |..-|...|+..... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45668 8987655444454 666677777754332 468999964
No 94
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.41 E-value=29 Score=25.47 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=28.9
Q ss_pred ccccccccCCcCCCeec--CCCCccccccHHhhhc-----cCCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMIL--PCGHSFGAAGVQHVIR-----MKACYTCSRPV 266 (347)
Q Consensus 223 ~L~CPIClell~dPVtl--~CGHsFC~~CL~~~le-----~~~CP~Cr~~v 266 (347)
.-.|.||.+- .-+.+ .|...|...|+...+. ...||.|....
T Consensus 12 ~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3459999863 22222 3888999999976653 45899997643
No 95
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.99 E-value=6.4 Score=38.03 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=0.0
Q ss_pred ccccccccccCCcCCC----eecCCCCccccccHHhhh
Q 019010 221 RAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHVI 254 (347)
Q Consensus 221 ~e~L~CPIClell~dP----Vtl~CGHsFC~~CL~~~l 254 (347)
...-.|.+|...|.-- --..||+.||..|.....
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp --------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3455799999876521 123499999999986543
No 96
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.27 E-value=19 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=25.5
Q ss_pred CccccccccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 216 SGDSLRAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 216 ~~~~L~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
.|..-.+...|.+|...|.--. --.||+.||..|....
T Consensus 14 ~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 14 YWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3433355668999998765211 1349999999997654
No 97
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.27 E-value=15 Score=29.31 Aligned_cols=47 Identities=4% Similarity=0.018 Sum_probs=36.0
Q ss_pred ccccccccccCCcCC-CeecCCCCccccccHHhhhccCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDD-AMILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~d-PVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
..-+.|..|...|.. +....=|..||..|..+.. ...|..|..+|..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-CccCcccCCcCCc
Confidence 466899999988865 3445578889999987654 4579999998874
No 98
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.82 E-value=11 Score=30.77 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=19.1
Q ss_pred cCCCeecCCCCccccccHHhhhccCCCCCCCCCC
Q 019010 233 MDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (347)
Q Consensus 233 l~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v 266 (347)
+..|.-..||+.|+ ........||.|+..-
T Consensus 65 v~p~~C~~CG~~F~----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp ECCCBBTTTCCBCC----CCSSCCSSCSSSCCCC
T ss_pred EECcChhhCcCeec----ccCCCCCCCcCCCCCc
Confidence 34555567888882 2222356899998763
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.58 E-value=15 Score=27.91 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=23.1
Q ss_pred ccccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 221 RAILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 221 ~e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
.+...|.+|...|.--. --.||..||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44557999998775211 1349999999998653
No 100
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.62 E-value=7.6 Score=33.63 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=34.6
Q ss_pred ccccccccccCCcCC---CeecCCCCccccccHHhhhccC-CCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~d---PVtl~CGHsFC~~CL~~~le~~-~CP~Cr~~v~~ 268 (347)
..-|.|..|...|.. +....=|..||..|..+.+... .|..|..+|..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 466889999888764 4555577888988887766433 68888887653
No 101
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=35.47 E-value=19 Score=27.97 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=23.4
Q ss_pred ccccccccccCCcCCC----eecCCCCccccccHHhhh
Q 019010 221 RAILSDPVTGNLMDDA----MILPCGHSFGAAGVQHVI 254 (347)
Q Consensus 221 ~e~L~CPIClell~dP----Vtl~CGHsFC~~CL~~~l 254 (347)
.+...|.+|...|.-- --..||+.||..|.....
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4456799999866421 113499999999976543
No 102
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.76 E-value=28 Score=29.39 Aligned_cols=45 Identities=7% Similarity=0.037 Sum_probs=27.9
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v 266 (347)
..-|.|..|...|.......=|..||..|..+.+ ...|..|...|
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-~~~C~~C~~~I 75 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-GTKCAACQLGI 75 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH-SCBCTTTCCBC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc-ccccccccccc
Confidence 4567888998877654334466778887776544 23455554444
No 103
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=33.41 E-value=19 Score=27.95 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=21.8
Q ss_pred cccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 222 AILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 222 e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
+...|.+|...|.--. --.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3446999998765211 1349999999997643
No 104
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.06 E-value=46 Score=24.23 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=26.0
Q ss_pred cccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~ 267 (347)
....|..|.+.+...++..-+..|...| +.|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C-------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC-------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT-------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc-------CeeCCCCCCCC
Confidence 4457999998776655555666665555 35778877654
No 105
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.50 E-value=33 Score=29.25 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=34.6
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhhccCCCCCCCCCCcCC
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLED 269 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~~ 269 (347)
..-|.|..|...|.......=|..||..|..+.+ ...|..|..++...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f-~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF-GTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT-SCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc-ccccccCCCccCCC
Confidence 4668899998887654334467788988877655 45799999887643
No 106
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=31.49 E-value=18 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=36.3
Q ss_pred ccccccccccCCcCC---CeecCCCCccccccHHhhhccC-CCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDD---AMILPCGHSFGAAGVQHVIRMK-ACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~d---PVtl~CGHsFC~~CL~~~le~~-~CP~Cr~~v~~ 268 (347)
..-|.|..|...|.. +....=|..||..|..+.+... .|..|..+|..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 467899999988853 4455678889999988766432 79999988753
No 107
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.34 E-value=10 Score=36.15 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.8
Q ss_pred CCCccccccccc
Q 019010 35 PGPKTRELTGFI 46 (347)
Q Consensus 35 ~~~~~~~~~~~~ 46 (347)
+.|||+++..|+
T Consensus 183 ~~~KTK~~~~~L 194 (293)
T 3bbo_G 183 EKPKTKDFIAAM 194 (293)
T ss_dssp TCCSSHHHHTTH
T ss_pred cCCCHHHHHHHH
Confidence 678999888776
No 108
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=31.20 E-value=18 Score=27.53 Aligned_cols=47 Identities=4% Similarity=0.064 Sum_probs=34.4
Q ss_pred ccccccccccCCcCCC-eecCCCCccccccHHhhhccCCCCCCCCCCcC
Q 019010 221 RAILSDPVTGNLMDDA-MILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (347)
Q Consensus 221 ~e~L~CPIClell~dP-Vtl~CGHsFC~~CL~~~le~~~CP~Cr~~v~~ 268 (347)
..-|.|..|...|... ....=|..||..|..+.+ ...|..|..+|..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~-~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED-SPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC-CCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc-CCccccCCCcccc
Confidence 4567899999888643 334467889998876544 4589999988863
No 109
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.18 E-value=16 Score=32.50 Aligned_cols=32 Identities=9% Similarity=-0.091 Sum_probs=22.2
Q ss_pred cccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 222 AILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 222 e~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
..-.|++|...|.--. --.||+.||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 3468999998775211 1349999999997643
No 110
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.00 E-value=19 Score=31.72 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=27.2
Q ss_pred ccccccCCcCCCe----ecC---CCCccccccHHhh------hc------cCCCCCCCCCC
Q 019010 225 SDPVTGNLMDDAM----ILP---CGHSFGAAGVQHV------IR------MKACYTCSRPV 266 (347)
Q Consensus 225 ~CPIClell~dPV----tl~---CGHsFC~~CL~~~------le------~~~CP~Cr~~v 266 (347)
.||||...+.+.- ++. |..-|...|+.-. +. ...||.|+...
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 5999998876542 454 6656666665321 11 47999998763
No 111
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=29.85 E-value=23 Score=37.83 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=35.5
Q ss_pred ccccccccccCCcCCCee----------cCCCCcc--------------------ccccHHhhhc---------cCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMI----------LPCGHSF--------------------GAAGVQHVIR---------MKACYT 261 (347)
Q Consensus 221 ~e~L~CPIClell~dPVt----------l~CGHsF--------------------C~~CL~~~le---------~~~CP~ 261 (347)
.+.-.|+-|+.-|.||-- +.||-.| |..|...+.. ...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 566689999988777652 4477555 9999988873 458999
Q ss_pred CCCCCc
Q 019010 262 CSRPVL 267 (347)
Q Consensus 262 Cr~~v~ 267 (347)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 998765
No 112
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.65 E-value=11 Score=36.06 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=29.2
Q ss_pred ccccccccCCcCCCeec----CCC--CccccccHHhhhc-cCCCCCCCCC
Q 019010 223 ILSDPVTGNLMDDAMIL----PCG--HSFGAAGVQHVIR-MKACYTCSRP 265 (347)
Q Consensus 223 ~L~CPIClell~dPVtl----~CG--HsFC~~CL~~~le-~~~CP~Cr~~ 265 (347)
.-.||+|.....-.+.. .=| +.+|..|-..|.- ...||.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 44799999765433332 234 4568889887764 4589999886
No 113
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.54 E-value=26 Score=25.94 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=20.9
Q ss_pred cccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 224 LSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 224 L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
-.|.+|...|.--. --.||+.||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 36999998765211 1349999999997643
No 114
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.36 E-value=64 Score=25.42 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=29.0
Q ss_pred cccccccccCCcCCCeecC---CCCccccccHHhhh--------c---------cCCCCCCCC
Q 019010 222 AILSDPVTGNLMDDAMILP---CGHSFGAAGVQHVI--------R---------MKACYTCSR 264 (347)
Q Consensus 222 e~L~CPIClell~dPVtl~---CGHsFC~~CL~~~l--------e---------~~~CP~Cr~ 264 (347)
.+-.|.||...-.+ ..++ |+..|...||.+.- + ..+||.|..
T Consensus 14 ~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 44579999854332 3444 88899999999851 1 358999954
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.37 E-value=27 Score=31.38 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=21.9
Q ss_pred ccccccccCCcCCCe----ecCCCCccccccHHhh
Q 019010 223 ILSDPVTGNLMDDAM----ILPCGHSFGAAGVQHV 253 (347)
Q Consensus 223 ~L~CPIClell~dPV----tl~CGHsFC~~CL~~~ 253 (347)
.-.|.+|...|.--. --.||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 457999998765211 1349999999997643
No 116
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.79 E-value=52 Score=23.65 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=32.8
Q ss_pred ccccccccccCCcCC-CeecCCCCcccc-ccHHhhhccCCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDD-AMILPCGHSFGA-AGVQHVIRMKACYTCSRPV 266 (347)
Q Consensus 221 ~e~L~CPIClell~d-PVtl~CGHsFC~-~CL~~~le~~~CP~Cr~~v 266 (347)
..-+.|..|...|.. +....=+..||. .|..+.+ ...|..|...+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh-CccCCCcCCce
Confidence 456889999988765 445557788999 6987665 34688887654
No 117
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.77 E-value=36 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=26.3
Q ss_pred ccccccCCcCCCee---cCCCCccccccHHhhhc-cCCCCCC
Q 019010 225 SDPVTGNLMDDAMI---LPCGHSFGAAGVQHVIR-MKACYTC 262 (347)
Q Consensus 225 ~CPIClell~dPVt---l~CGHsFC~~CL~~~le-~~~CP~C 262 (347)
.|-.|+..+.+... ..|.+.||..|=.=.-+ ...||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 48889888866543 34999999999432222 4579988
No 118
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=25.41 E-value=18 Score=29.34 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=10.6
Q ss_pred ccccccHHhhhc
Q 019010 244 SFGAAGVQHVIR 255 (347)
Q Consensus 244 sFC~~CL~~~le 255 (347)
.||+.||.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=25.31 E-value=18 Score=29.37 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.6
Q ss_pred ccccccHHhhhc
Q 019010 244 SFGAAGVQHVIR 255 (347)
Q Consensus 244 sFC~~CL~~~le 255 (347)
.||+.||.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 120
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.71 E-value=29 Score=25.88 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.1
Q ss_pred ccccccccccccCCcC
Q 019010 219 SLRAILSDPVTGNLMD 234 (347)
Q Consensus 219 ~L~e~L~CPIClell~ 234 (347)
.|-+.+.||+|...|.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 3567889999997554
No 121
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.46 E-value=40 Score=22.85 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=24.5
Q ss_pred ccccccCCcCCCeec---CCCCccccccHHhhhc-----cCCCCCCCCC
Q 019010 225 SDPVTGNLMDDAMIL---PCGHSFGAAGVQHVIR-----MKACYTCSRP 265 (347)
Q Consensus 225 ~CPIClell~dPVtl---~CGHsFC~~CL~~~le-----~~~CP~Cr~~ 265 (347)
.|.||...-..-.++ .|...|...|+..-+. ...||.|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 377787542222222 3777888888865442 4579999653
No 122
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=23.37 E-value=25 Score=30.22 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=4.2
Q ss_pred CCCCCCccccCC
Q 019010 72 ERRDPPQAREWS 83 (347)
Q Consensus 72 ~~~~~~~~~~~~ 83 (347)
+.++.+..++..
T Consensus 246 ~~ga~~~~~~~~ 257 (282)
T 1oy3_D 246 AHGAPEPEDGGD 257 (282)
T ss_dssp HTTCCCCCCC--
T ss_pred HcCCCcCcCCCc
Confidence 344444444433
No 123
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=23.24 E-value=63 Score=31.80 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=28.2
Q ss_pred cccccccCCcC--CCeecCCCCccccccHHhhhc-----------cCCCCCCCCCC
Q 019010 224 LSDPVTGNLMD--DAMILPCGHSFGAAGVQHVIR-----------MKACYTCSRPV 266 (347)
Q Consensus 224 L~CPIClell~--dPVtl~CGHsFC~~CL~~~le-----------~~~CP~Cr~~v 266 (347)
..|.+|.+--. -.-.-.|...||..||.+.+. ...|-.|...-
T Consensus 94 ~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 94 SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 35888875211 000125889999999999883 45899997553
No 124
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=23.05 E-value=28 Score=37.20 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=34.8
Q ss_pred ccccccccccCCcCCCee----------cCCCCcc--------------------ccccHHhhhc---------cCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMI----------LPCGHSF--------------------GAAGVQHVIR---------MKACYT 261 (347)
Q Consensus 221 ~e~L~CPIClell~dPVt----------l~CGHsF--------------------C~~CL~~~le---------~~~CP~ 261 (347)
.+.-.|+-|+.-|.||-- +.||-.| |..|...+-. ...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 556689999988777652 4477444 9999988863 458999
Q ss_pred CCCCCc
Q 019010 262 CSRPVL 267 (347)
Q Consensus 262 Cr~~v~ 267 (347)
|.-.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 988764
No 125
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.87 E-value=65 Score=20.99 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=22.5
Q ss_pred ccccccccccCCcCCCeecCCCCccccccHHhhh-------ccCCCCCCCCCCc
Q 019010 221 RAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVI-------RMKACYTCSRPVL 267 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~CGHsFC~~CL~~~l-------e~~~CP~Cr~~v~ 267 (347)
...+.|++|...|..... |..++ ....|+.|...+.
T Consensus 10 ~k~~~C~~C~k~f~~~~~-----------L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDH-----------LNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHH-----------HHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHH-----------HHHHHHHhcCCCCCccCCCCCCCCC
Confidence 345779998877765432 22221 1468999988764
No 126
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.78 E-value=66 Score=22.88 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=27.1
Q ss_pred cccccccccCCcCCCeec--CCCCccccccHHhhhc-----cCCCCCCCCC
Q 019010 222 AILSDPVTGNLMDDAMIL--PCGHSFGAAGVQHVIR-----MKACYTCSRP 265 (347)
Q Consensus 222 e~L~CPIClell~dPVtl--~CGHsFC~~CL~~~le-----~~~CP~Cr~~ 265 (347)
....|.||... .-+.+ .|...|...|+...+. ...||.|...
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 34569999862 11211 2777888888875443 4579999765
No 127
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=22.76 E-value=28 Score=25.58 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=29.0
Q ss_pred ccccccccccCCcCCCeecC---CCCccccccHHhhhc-----cCCCCCCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMILP---CGHSFGAAGVQHVIR-----MKACYTCSRPV 266 (347)
Q Consensus 221 ~e~L~CPIClell~dPVtl~---CGHsFC~~CL~~~le-----~~~CP~Cr~~v 266 (347)
.....|+||...-..-.++. |..-|...|+..... ...||.|...+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34567999987654323343 666777777764332 45799996543
No 128
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.79 E-value=77 Score=23.56 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=26.0
Q ss_pred cccccccccCCcC-CCeecC---CCCccccccHHhh---h---ccCCCCCCCCCCc
Q 019010 222 AILSDPVTGNLMD-DAMILP---CGHSFGAAGVQHV---I---RMKACYTCSRPVL 267 (347)
Q Consensus 222 e~L~CPIClell~-dPVtl~---CGHsFC~~CL~~~---l---e~~~CP~Cr~~v~ 267 (347)
+.+.| ||..... +-.++. |..=|...|+.-. . ..+.||.|+....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 44567 8988763 223444 5555555665321 1 2578999987643
No 129
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.53 E-value=52 Score=20.80 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=11.4
Q ss_pred ccccccccccCCcCCC
Q 019010 221 RAILSDPVTGNLMDDA 236 (347)
Q Consensus 221 ~e~L~CPIClell~dP 236 (347)
...+.|++|...|...
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 10 RKQVACEICGKIFRDV 25 (48)
T ss_dssp CCSEEETTTTEEESSH
T ss_pred CcCeeCCCCCcccCCH
Confidence 4567899988777654
No 130
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=20.39 E-value=23 Score=37.28 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=33.7
Q ss_pred ccccccccccCCcCCCee----------cCCCCcc--------------------ccccHHhhhc---------cCCCCC
Q 019010 221 RAILSDPVTGNLMDDAMI----------LPCGHSF--------------------GAAGVQHVIR---------MKACYT 261 (347)
Q Consensus 221 ~e~L~CPIClell~dPVt----------l~CGHsF--------------------C~~CL~~~le---------~~~CP~ 261 (347)
.+.-.|+-|+.-|.||-- +.||-.| |..|...+.. ...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 455679999877766542 3477554 9999988863 458999
Q ss_pred CCCCC
Q 019010 262 CSRPV 266 (347)
Q Consensus 262 Cr~~v 266 (347)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 98877
Done!