BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019011
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 146/168 (86%), Positives = 160/168 (95%)
Query: 1 MGVPETDPLSQLNLPPGFRFYPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLP 60
MG+ ETDPL+QL+LPPGFRFYPTDEEL+VQYLCRK AG FSLQ+I EIDLYKFDPWVLP
Sbjct: 7 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 66
Query: 61 SKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFY 120
+KA+FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII+TEG++VGIKKALVFY
Sbjct: 67 NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY 126
Query: 121 VGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIYKKHSGSQK 168
+GKAPKGTKTNWIMHEYRL EPSR+NGS+KLDDWVLCRIYKK S +QK
Sbjct: 127 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 321 bits (823), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 146/168 (86%), Positives = 160/168 (95%)
Query: 1 MGVPETDPLSQLNLPPGFRFYPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLP 60
MG+ ETDPL+QL+LPPGFRFYPTDEEL+VQYLCRK AG FSLQ+I EIDLYKFDPWVLP
Sbjct: 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63
Query: 61 SKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFY 120
+KA+FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII+TEG++VGIKKALVFY
Sbjct: 64 NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY 123
Query: 121 VGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIYKKHSGSQK 168
+GKAPKGTKTNWIMHEYRL EPSR+NGS+KLDDWVLCRIYKK S +QK
Sbjct: 124 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/169 (65%), Positives = 130/169 (76%), Gaps = 5/169 (2%)
Query: 5 ETDPLSQLNLPPGFRFYPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLPSKAI 64
E D ++LNLPPGFRF+PTD+EL+ YLCRK AGQ + II E+DLYKFDPW LP +A+
Sbjct: 6 ERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL 65
Query: 65 FGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKA 124
FG +EWYFF+PRDRKYPNGSRPNR AG+GYWKATG DK + GR +GIKKALVFY GKA
Sbjct: 66 FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA 125
Query: 125 PKGTKTNWIMHEYRL-----FEPSRKNGSSKLDDWVLCRIYKKHSGSQK 168
P+G KT+WIMHEYRL K GS +LDDWVLCR+Y K + +K
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 48 EIDLYKFDPWVLPSKAIFGEKEWY---FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 104
E +L D W ++ +FG+ E + +FS Y +G R YW D ++
Sbjct: 461 EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVL 520
Query: 105 TTEGRKVG---IKKALVFY 120
G ++G I+ ALV +
Sbjct: 521 NVSGHRLGTAEIESALVAH 539
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,870,806
Number of Sequences: 62578
Number of extensions: 455981
Number of successful extensions: 655
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 12
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)