Query 019011
Match_columns 347
No_of_seqs 204 out of 990
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 7.2E-61 2.4E-65 428.8 13.6 166 1-166 4-169 (171)
2 3ulx_A Stress-induced transcri 100.0 2.1E-60 7.3E-65 426.8 15.2 165 1-165 1-171 (174)
3 2c4b_A Barnase mcoeeti fusion; 20.2 71 0.0024 27.4 3.2 61 23-97 4-72 (143)
4 1ldd_A APC2WHB, anaphase promo 18.1 60 0.002 24.8 2.1 27 15-42 37-64 (74)
5 1cmb_A Met APO-repressor; DNA- 14.7 1.2E+02 0.0043 24.1 3.2 39 21-63 50-88 (104)
6 4dox_A Coat protein; all helix 13.0 93 0.0032 28.6 2.3 26 12-37 153-178 (226)
7 3nr5_A MAF1, repressor of RNA 10.8 49 0.0017 29.0 -0.3 12 46-57 119-130 (164)
8 3cpr_A Dihydrodipicolinate syn 10.6 1E+02 0.0035 28.6 1.8 19 13-32 117-135 (304)
9 3dz1_A Dihydrodipicolinate syn 10.3 1.2E+02 0.0042 28.2 2.2 18 13-32 108-125 (313)
10 2z2f_A Lysozyme C-2; stomach l 9.9 72 0.0025 26.6 0.4 26 295-320 31-64 (129)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.2e-61 Score=428.79 Aligned_cols=166 Identities=87% Similarity=1.528 Sum_probs=139.9
Q ss_pred CCCCCCCCCCCCCCCCCccccCChHHHHHHHHHHHHcCCCCCCcceeeccCCCCCCCCCCCcCccCceeEEEEcccCCcC
Q 019011 1 MGVPETDPLSQLNLPPGFRFYPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKY 80 (347)
Q Consensus 1 m~~~~~~p~~~~~LPPGfRF~PTDEELI~~YL~rKi~g~p~~~~iI~evDVY~~ePWeLP~~a~~ge~eWYFFs~r~rky 80 (347)
||+++.++..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++++|||||++++||
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCCCccccCCceeEeeCcceeEecCCeEEEEEEEEeeecCCCCCCCccCeEEeeEeecCCCCcCCCCCCCceEEEEEE
Q 019011 81 PNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIY 160 (347)
Q Consensus 81 ~~G~R~nR~tg~GyWK~tG~~k~I~~~G~~VG~KKtLvFy~gr~pkg~KT~WvMhEYrL~~~~~~~~~~~~~e~VLCRIy 160 (347)
++|.|+||+|++||||++|+++.|..++.+||+||+|+||.|++|++.||+|+||||+|......++....++|||||||
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred CCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence 99999999999999999999999988889999999999999999999999999999999987543334566899999999
Q ss_pred ecCCCC
Q 019011 161 KKHSGS 166 (347)
Q Consensus 161 kK~~~~ 166 (347)
+|+...
T Consensus 164 ~k~~~~ 169 (171)
T 1ut7_A 164 KKQSSA 169 (171)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 998654
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.1e-60 Score=426.83 Aligned_cols=165 Identities=67% Similarity=1.296 Sum_probs=140.3
Q ss_pred CC-CCCCCCCCCCCCCCCccccCChHHHHHHHHHHHHcCCCCCCcceeeccCCCCCCCCCCCcCccCceeEEEEcccCCc
Q 019011 1 MG-VPETDPLSQLNLPPGFRFYPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRK 79 (347)
Q Consensus 1 m~-~~~~~p~~~~~LPPGfRF~PTDEELI~~YL~rKi~g~p~~~~iI~evDVY~~ePWeLP~~a~~ge~eWYFFs~r~rk 79 (347)
|| +++.+...++.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..++++|||||+|++|
T Consensus 1 ~~~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~k 80 (174)
T 3ulx_A 1 MGMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRK 80 (174)
T ss_dssp --------CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-
T ss_pred CCcccccccccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccc
Confidence 88 88899999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CCCCCCCccccCCceeEeeCcceeEecCCeEEEEEEEEeeecCCCCCCCccCeEEeeEeecCCCCc-----CCCCCCCce
Q 019011 80 YPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLFEPSRK-----NGSSKLDDW 154 (347)
Q Consensus 80 y~~G~R~nR~tg~GyWK~tG~~k~I~~~G~~VG~KKtLvFy~gr~pkg~KT~WvMhEYrL~~~~~~-----~~~~~~~e~ 154 (347)
|++|.|+||+|++||||++|+++.|..+|.+||+||+|+||.|++|++.||+|+||||+|.+.... .+....++|
T Consensus 81 y~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 81 YPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp ----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred cCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 999999999999999999999999988899999999999999999999999999999999986432 122356899
Q ss_pred EEEEEEecCCC
Q 019011 155 VLCRIYKKHSG 165 (347)
Q Consensus 155 VLCRIykK~~~ 165 (347)
||||||+|+..
T Consensus 161 VlCrvf~K~~~ 171 (174)
T 3ulx_A 161 VLCRLYNKKNE 171 (174)
T ss_dssp EEEEEEESCC-
T ss_pred EEEEEEEcCCC
Confidence 99999998753
No 3
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=20.22 E-value=71 Score=27.44 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCccee--eccCCCCCCCC------CCCcCccCceeEEEEcccCCcCCCCCCCccccCCce
Q 019011 23 TDEELLVQYLCRKVAGQHFSLQIIG--EIDLYKFDPWV------LPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGY 94 (347)
Q Consensus 23 TDEELI~~YL~rKi~g~p~~~~iI~--evDVY~~ePWe------LP~~a~~ge~eWYFFs~r~rky~~G~R~nR~tg~Gy 94 (347)
|+.+-|..||.. -..+|..+|. +++--+.+|-. +|+++..|+. |..+.+.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~v----F~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDI----FSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEE----ECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCce----EecCCCcCCC-------CCCCE
Confidence 455666788876 3455666664 45666777754 5776554432 6666544443 23678
Q ss_pred eEe
Q 019011 95 WKA 97 (347)
Q Consensus 95 WK~ 97 (347)
|+.
T Consensus 70 y~E 72 (143)
T 2c4b_A 70 WRE 72 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=18.12 E-value=60 Score=24.78 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCccccC-ChHHHHHHHHHHHHcCCCCC
Q 019011 15 PPGFRFYP-TDEELLVQYLCRKVAGQHFS 42 (347)
Q Consensus 15 PPGfRF~P-TDEELI~~YL~rKi~g~p~~ 42 (347)
|.|+.|.. |++||- .||.+|+....+.
T Consensus 37 ~~~~~~~~it~~eL~-~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLE-GYLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHH-HHHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHH-HHHHHHHhCCeEE
Confidence 67899998 999996 6999999987654
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=14.73 E-value=1.2e+02 Score=24.14 Aligned_cols=39 Identities=28% Similarity=0.292 Sum_probs=32.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCcceeeccCCCCCCCCCCCcC
Q 019011 21 YPTDEELLVQYLCRKVAGQHFSLQIIGEIDLYKFDPWVLPSKA 63 (347)
Q Consensus 21 ~PTDEELI~~YL~rKi~g~p~~~~iI~evDVY~~ePWeLP~~a 63 (347)
|-|..||+..-...-..|+|+|.+ .|+-+..|.++|..+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D----~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD----ADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG----GGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc----hhhhhcCCccchHHH
Confidence 568888888777788899999874 799999999999765
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=12.98 E-value=93 Score=28.57 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=18.0
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHc
Q 019011 12 LNLPPGFRFYPTDEELLVQYLCRKVA 37 (347)
Q Consensus 12 ~~LPPGfRF~PTDEELI~~YL~rKi~ 37 (347)
+.-+-|..+.||++|+|.|=..+++.
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44456999999999999987666554
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=10.82 E-value=49 Score=28.98 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=10.7
Q ss_pred eeeccCCCCCCC
Q 019011 46 IGEIDLYKFDPW 57 (347)
Q Consensus 46 I~evDVY~~ePW 57 (347)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 678999999998
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=10.61 E-value=1e+02 Score=28.62 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.7
Q ss_pred CCCCCccccCChHHHHHHHH
Q 019011 13 NLPPGFRFYPTDEELLVQYL 32 (347)
Q Consensus 13 ~LPPGfRF~PTDEELI~~YL 32 (347)
-+|| |.+.||+++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3456 568899999998874
No 9
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.34 E-value=1.2e+02 Score=28.25 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=13.5
Q ss_pred CCCCCccccCChHHHHHHHH
Q 019011 13 NLPPGFRFYPTDEELLVQYL 32 (347)
Q Consensus 13 ~LPPGfRF~PTDEELI~~YL 32 (347)
-+|| | |.||+++|+.||-
T Consensus 108 v~~P-~-~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 108 IAPP-P-SLRTDEQITTYFR 125 (313)
T ss_dssp ECCC-T-TCCSHHHHHHHHH
T ss_pred ECCC-C-CCCCHHHHHHHHH
Confidence 3566 4 5699999998764
No 10
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C, bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Probab=9.91 E-value=72 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=18.9
Q ss_pred hHHHhhcccceeeC--------CCCccccCCccc
Q 019011 295 EEEVQSGLRNQRVD--------NSGLFQHNSAVL 320 (347)
Q Consensus 295 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 320 (347)
--+++|+.+|.-+. .-|+||+||.-+
T Consensus 31 iA~~ES~~nt~Av~~n~~~gS~dyGLfQINs~~w 64 (129)
T 2z2f_A 31 LTKWESSYNTKATNYNPSSESTDYGIFQINSKWW 64 (129)
T ss_dssp HHHHHHTTBTTCEEEETTTTEEEETTTTEETTTS
T ss_pred HHHHHcCCCCcCeeccCCCCCceeeeEeechhhh
Confidence 45678888877653 358999999654
Done!