Query 019014
Match_columns 347
No_of_seqs 148 out of 1223
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.9E-90 6.4E-95 665.7 22.2 310 31-346 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 4E-47 8.6E-52 349.4 23.8 248 28-338 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 4.5E-09 9.8E-14 102.6 18.3 245 45-345 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.9 1.5E-08 3.2E-13 97.3 13.4 195 31-277 30-252 (314)
5 COG3867 Arabinogalactan endo-1 98.5 4.7E-06 1E-10 79.3 15.7 249 44-345 64-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00019 4.1E-09 75.7 24.1 237 47-343 317-584 (604)
7 PF00150 Cellulase: Cellulase 98.2 8.9E-05 1.9E-09 69.3 17.6 125 31-157 11-166 (281)
8 smart00633 Glyco_10 Glycosyl h 97.7 0.006 1.3E-07 57.4 19.3 188 96-344 56-251 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.2 0.045 9.8E-07 52.4 19.1 56 31-86 18-81 (298)
10 PF11790 Glyco_hydro_cc: Glyco 97.1 0.024 5.3E-07 53.0 15.6 212 56-340 19-232 (239)
11 TIGR03356 BGL beta-galactosida 97.1 0.087 1.9E-06 53.5 20.2 72 261-339 335-414 (427)
12 PF02449 Glyco_hydro_42: Beta- 96.7 0.19 4.2E-06 49.8 19.5 83 45-127 12-140 (374)
13 PLN02998 beta-glucosidase 95.6 0.72 1.6E-05 47.9 17.1 73 261-339 390-466 (497)
14 PLN02814 beta-glucosidase 95.4 1.9 4E-05 45.0 19.6 72 261-339 385-461 (504)
15 PLN02849 beta-glucosidase 94.5 6.7 0.00014 40.9 20.5 73 261-339 383-461 (503)
16 PRK09593 arb 6-phospho-beta-gl 94.0 8.5 0.00019 39.8 22.2 70 264-339 369-448 (478)
17 PRK10340 ebgA cryptic beta-D-g 94.0 2.1 4.5E-05 48.4 16.7 96 31-126 337-451 (1021)
18 PF00232 Glyco_hydro_1: Glycos 92.7 0.084 1.8E-06 54.0 3.0 284 45-343 60-442 (455)
19 PRK09936 hypothetical protein; 91.7 13 0.00029 35.9 17.0 61 28-88 19-96 (296)
20 PF01229 Glyco_hydro_39: Glyco 85.6 47 0.001 34.3 17.2 252 47-341 44-350 (486)
21 COG3934 Endo-beta-mannanase [C 83.3 2.8 6.1E-05 43.1 6.3 186 100-344 123-312 (587)
22 cd02875 GH18_chitobiase Chitob 82.2 10 0.00023 37.5 9.9 136 56-212 55-191 (358)
23 PRK13511 6-phospho-beta-galact 77.8 3.1 6.6E-05 42.9 4.6 72 261-339 365-446 (469)
24 PF03662 Glyco_hydro_79n: Glyc 74.5 18 0.00039 35.6 8.7 86 68-153 113-203 (319)
25 smart00481 POLIIIAc DNA polyme 69.3 16 0.00035 26.6 5.6 45 42-86 14-63 (67)
26 cd02874 GH18_CFLE_spore_hydrol 68.0 28 0.00062 33.4 8.5 83 67-155 48-138 (313)
27 PRK09525 lacZ beta-D-galactosi 66.7 56 0.0012 37.2 11.5 92 31-125 353-463 (1027)
28 PRK09589 celA 6-phospho-beta-g 64.2 16 0.00035 37.8 6.3 71 263-339 367-447 (476)
29 PF14488 DUF4434: Domain of un 62.0 1.1E+02 0.0024 26.9 10.5 42 46-87 23-88 (166)
30 cd00598 GH18_chitinase-like Th 60.2 31 0.00067 30.5 6.7 84 69-155 54-142 (210)
31 PF00925 GTP_cyclohydro2: GTP 59.7 9.7 0.00021 33.7 3.3 37 49-85 132-168 (169)
32 PF06117 DUF957: Enterobacteri 59.3 29 0.00063 25.9 5.1 47 95-153 9-55 (65)
33 COG4782 Uncharacterized protei 58.9 27 0.00058 35.0 6.4 55 240-297 124-184 (377)
34 PRK09852 cryptic 6-phospho-bet 54.3 30 0.00065 35.8 6.2 71 263-339 365-444 (474)
35 TIGR00505 ribA GTP cyclohydrol 54.0 17 0.00036 32.9 3.9 33 49-81 131-163 (191)
36 PRK00393 ribA GTP cyclohydrola 53.4 17 0.00037 33.0 3.9 33 49-81 134-166 (197)
37 TIGR01233 lacG 6-phospho-beta- 53.1 29 0.00064 35.8 6.0 73 261-339 364-444 (467)
38 PF06180 CbiK: Cobalt chelatas 52.6 1.5E+02 0.0033 28.2 10.3 140 41-213 56-208 (262)
39 PRK13347 coproporphyrinogen II 49.9 32 0.0007 35.1 5.7 104 46-156 152-282 (453)
40 cd04743 NPD_PKS 2-Nitropropane 49.6 1E+02 0.0022 30.4 8.7 80 28-125 55-134 (320)
41 PRK15014 6-phospho-beta-glucos 48.0 31 0.00068 35.7 5.2 71 263-339 368-448 (477)
42 PF04909 Amidohydro_2: Amidohy 47.9 51 0.0011 30.0 6.2 52 141-207 85-137 (273)
43 PF05990 DUF900: Alpha/beta hy 47.4 42 0.00092 31.1 5.6 38 257-297 43-86 (233)
44 cd06598 GH31_transferase_CtsZ 44.6 3E+02 0.0065 26.6 11.6 71 135-213 22-96 (317)
45 KOG0626 Beta-glucosidase, lact 44.4 48 0.001 34.7 5.8 77 260-343 404-498 (524)
46 PRK12485 bifunctional 3,4-dihy 44.4 25 0.00054 35.2 3.7 33 49-82 331-363 (369)
47 PLN03059 beta-galactosidase; P 43.9 5E+02 0.011 29.1 13.7 116 46-166 62-223 (840)
48 cd00641 GTP_cyclohydro2 GTP cy 43.3 30 0.00065 31.2 3.8 33 49-81 133-165 (193)
49 COG1433 Uncharacterized conser 43.2 42 0.00091 28.3 4.3 39 47-85 56-94 (121)
50 TIGR03632 bact_S11 30S ribosom 42.5 51 0.0011 27.0 4.7 37 46-82 50-91 (108)
51 cd06545 GH18_3CO4_chitinase Th 41.8 78 0.0017 29.4 6.5 81 68-155 50-133 (253)
52 PRK14019 bifunctional 3,4-dihy 40.8 30 0.00065 34.6 3.7 35 49-84 328-362 (367)
53 PF14871 GHL6: Hypothetical gl 39.9 55 0.0012 27.8 4.7 44 44-87 1-67 (132)
54 PF02055 Glyco_hydro_30: O-Gly 39.9 3.5E+02 0.0076 28.3 11.4 63 101-163 208-278 (496)
55 PF12876 Cellulase-like: Sugar 39.0 57 0.0012 25.3 4.3 50 113-164 8-63 (88)
56 PF01055 Glyco_hydro_31: Glyco 37.9 2.3E+02 0.0049 28.5 9.6 135 135-318 41-180 (441)
57 TIGR03628 arch_S11P archaeal r 37.3 66 0.0014 26.8 4.6 37 46-82 53-102 (114)
58 cd01543 PBP1_XylR Ligand-bindi 37.2 1.3E+02 0.0029 27.1 7.3 101 45-168 97-210 (265)
59 PRK09314 bifunctional 3,4-dihy 37.1 41 0.00088 33.4 3.9 34 48-81 300-334 (339)
60 COG2159 Predicted metal-depend 36.2 2.2E+02 0.0048 27.4 8.8 95 141-278 113-209 (293)
61 PRK08815 GTP cyclohydrolase; P 36.2 42 0.0009 33.8 3.8 37 49-85 305-341 (375)
62 PRK09318 bifunctional 3,4-dihy 36.1 42 0.00092 33.9 3.9 37 49-85 320-356 (387)
63 smart00636 Glyco_18 Glycosyl h 35.1 1.3E+02 0.0029 28.8 7.2 80 70-153 57-142 (334)
64 cd02872 GH18_chitolectin_chito 34.9 1.4E+02 0.0031 29.1 7.4 78 76-154 69-151 (362)
65 PHA01735 hypothetical protein 34.2 29 0.00063 26.4 1.8 29 91-127 30-58 (76)
66 PLN02831 Bifunctional GTP cycl 33.4 48 0.001 34.2 3.8 37 49-85 373-409 (450)
67 PRK09311 bifunctional 3,4-dihy 33.3 49 0.0011 33.6 3.8 34 49-82 339-372 (402)
68 cd02873 GH18_IDGF The IDGF's ( 33.2 5.2E+02 0.011 26.1 11.3 21 135-155 167-187 (413)
69 PF00411 Ribosomal_S11: Riboso 33.1 78 0.0017 25.9 4.4 37 46-82 50-91 (110)
70 PF02811 PHP: PHP domain; Int 33.0 94 0.002 26.2 5.2 47 40-86 13-64 (175)
71 PRK09319 bifunctional 3,4-dihy 33.0 49 0.0011 34.9 3.9 37 49-85 343-379 (555)
72 TIGR01579 MiaB-like-C MiaB-lik 32.9 5.1E+02 0.011 25.9 12.9 60 135-213 271-330 (414)
73 PRK09607 rps11p 30S ribosomal 31.7 90 0.0019 26.7 4.6 37 46-82 60-109 (132)
74 TIGR03822 AblA_like_2 lysine-2 31.6 2.9E+02 0.0064 26.8 8.9 39 49-87 159-207 (321)
75 CHL00041 rps11 ribosomal prote 31.1 99 0.0022 25.7 4.7 36 46-81 63-103 (116)
76 PLN00196 alpha-amylase; Provis 30.5 1.8E+02 0.004 29.6 7.5 30 137-167 178-208 (428)
77 PF14587 Glyco_hydr_30_2: O-Gl 28.9 3.8E+02 0.0081 27.2 9.2 95 68-166 108-227 (384)
78 PRK13210 putative L-xylulose 5 28.9 4.6E+02 0.01 24.1 10.0 107 44-155 17-147 (284)
79 PRK05309 30S ribosomal protein 28.4 1.2E+02 0.0025 25.8 4.8 36 46-81 67-107 (128)
80 KOG0078 GTP-binding protein SE 28.2 1.5E+02 0.0033 27.3 5.8 82 27-125 41-127 (207)
81 COG4213 XylF ABC-type xylose t 28.0 72 0.0016 31.4 3.8 75 68-165 176-251 (341)
82 COG2730 BglC Endoglucanase [Ca 27.6 2.9E+02 0.0062 27.8 8.3 104 46-154 76-219 (407)
83 cd03412 CbiK_N Anaerobic cobal 26.8 2.8E+02 0.0061 23.0 6.9 48 40-87 53-110 (127)
84 PF00331 Glyco_hydro_10: Glyco 26.7 58 0.0013 31.7 3.0 221 68-343 63-312 (320)
85 COG0807 RibA GTP cyclohydrolas 26.6 1E+02 0.0022 28.2 4.3 40 49-88 133-172 (193)
86 cd02876 GH18_SI-CLP Stabilin-1 26.6 5.7E+02 0.012 24.4 10.2 84 69-155 56-148 (318)
87 COG3858 Predicted glycosyl hyd 26.3 1.3E+02 0.0029 30.6 5.5 83 67-155 150-242 (423)
88 TIGR03234 OH-pyruv-isom hydrox 25.8 1.3E+02 0.0029 27.5 5.2 50 31-81 3-56 (254)
89 COG1058 CinA Predicted nucleot 25.2 2.6E+02 0.0056 26.7 6.9 63 115-205 3-66 (255)
90 TIGR00510 lipA lipoate synthas 25.0 5.6E+02 0.012 24.9 9.4 135 48-213 99-247 (302)
91 PRK09997 hydroxypyruvate isome 24.9 5.4E+02 0.012 23.6 10.2 49 33-82 6-58 (258)
92 TIGR03470 HpnH hopanoid biosyn 24.8 6.4E+02 0.014 24.3 13.3 42 42-83 58-106 (318)
93 PF13721 SecD-TM1: SecD export 24.8 2.8E+02 0.0061 22.3 6.2 36 27-62 30-65 (101)
94 PRK12581 oxaloacetate decarbox 23.8 92 0.002 32.3 3.9 36 49-84 111-152 (468)
95 cd00854 NagA N-acetylglucosami 23.8 1.1E+02 0.0023 30.4 4.3 44 42-86 145-194 (374)
96 PRK07379 coproporphyrinogen II 23.5 2.4E+02 0.0053 28.2 6.9 26 136-162 226-251 (400)
97 PRK15321 putative type III sec 23.4 2.2E+02 0.0048 23.2 5.2 45 249-305 39-84 (120)
98 PRK07198 hypothetical protein; 23.4 58 0.0013 33.0 2.3 37 49-85 338-375 (418)
99 TIGR01162 purE phosphoribosyla 23.2 97 0.0021 27.3 3.4 47 40-86 9-62 (156)
100 PF07799 DUF1643: Protein of u 22.6 90 0.002 26.1 3.1 36 176-213 22-60 (136)
101 PRK09004 FMN-binding protein M 22.3 4.8E+02 0.01 22.1 9.7 112 30-156 3-115 (146)
102 PF00834 Ribul_P_3_epim: Ribul 21.8 6E+02 0.013 23.0 8.8 93 45-156 69-166 (201)
103 PF00704 Glyco_hydro_18: Glyco 21.7 2.8E+02 0.0061 26.3 6.7 112 74-212 70-196 (343)
104 PF02579 Nitro_FeMo-Co: Dinitr 21.7 2.1E+02 0.0046 21.6 4.9 40 45-84 42-81 (94)
105 COG5016 Pyruvate/oxaloacetate 21.5 90 0.0019 31.9 3.2 40 46-85 97-146 (472)
106 PRK14042 pyruvate carboxylase 21.4 1.1E+02 0.0023 32.9 3.9 40 45-84 94-143 (596)
107 PF14903 WG_beta_rep: WG conta 21.2 66 0.0014 19.8 1.5 16 331-346 1-16 (35)
108 COG2113 ProX ABC-type proline/ 20.8 2.2E+02 0.0048 27.7 5.8 40 50-90 52-92 (302)
109 TIGR02026 BchE magnesium-proto 20.7 9.4E+02 0.02 24.8 11.4 97 43-149 222-335 (497)
110 cd07944 DRE_TIM_HOA_like 4-hyd 20.6 6.9E+02 0.015 23.5 9.0 87 49-150 88-180 (266)
111 COG1453 Predicted oxidoreducta 20.6 70 0.0015 32.2 2.2 42 46-87 34-85 (391)
112 COG0635 HemN Coproporphyrinoge 20.5 2.4E+02 0.0053 28.6 6.2 105 46-156 137-267 (416)
113 TIGR00538 hemN oxygen-independ 20.3 4.7E+02 0.01 26.6 8.3 107 46-156 151-281 (455)
114 PF13756 Stimulus_sens_1: Stim 20.1 91 0.002 25.6 2.5 25 44-68 2-29 (112)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.9e-90 Score=665.67 Aligned_cols=310 Identities=51% Similarity=0.899 Sum_probs=258.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhcccc
Q 019014 31 TGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDY 110 (347)
Q Consensus 31 ~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 110 (347)
||||||+.++|+|+|++|+++||+++|++||||++|+++|+|++++||+|++||+|++++++++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhh
Q 019014 111 ANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLD 190 (347)
Q Consensus 111 ~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~ 190 (347)
+|.++|++|+||||++..... ..|+|+|+++|++|+++||+++|||+|+++++++..+||||+|.|++++.++|+
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~-----~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~ 155 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN-----AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMD 155 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG-----GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHH
T ss_pred CcccceeeeecccccccCccc-----eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhh
Confidence 999999999999999986543 289999999999999999998999999999999999999999999999989999
Q ss_pred HHHHHHhhcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCCCCCcEEEee
Q 019014 191 PVIRFLVDNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGGGSLRIVVSE 270 (347)
Q Consensus 191 ~~l~fL~~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~~~~~vvV~E 270 (347)
++++||.++++|||+|+||||.+..+|.+++|+||+|++++... |+++.|+||||+|+|++++||+++|+++++|+|+|
T Consensus 156 ~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~E 234 (310)
T PF00332_consen 156 PLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGE 234 (310)
T ss_dssp HHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEE
T ss_pred HHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEec
Confidence 99999999999999999999999999999999999999887666 78999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCceeeecCCCCceeeccc
Q 019014 271 SGWPTAGGTAASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWGLFLPNKQPKYSINF 346 (347)
Q Consensus 271 tGWPS~G~~~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 346 (347)
|||||+|+.+++++||+.|++++++|+.+|||+||+.++++||||||||+||+++.+|||||||++||+|||+|+|
T Consensus 235 TGWPs~G~~~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 235 TGWPSAGDPGATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp E---SSSSTTCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cccccCCCCCCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-47 Score=349.36 Aligned_cols=248 Identities=22% Similarity=0.322 Sum_probs=202.1
Q ss_pred CCceeEEecCCCCC--CCCHHHHH---HHHhcCCCCeEEEecCCc----chHHHHhcCCCeEEEecCCCchhhHHHhHHH
Q 019014 28 DAQTGVCYGRDGTG--LPSEQEVV---SLYKQTNIQRMRLYAPNQ----ATLQALRGSNIELLLGVPNSDLQNVAASQAN 98 (347)
Q Consensus 28 ~~~~Gi~Yg~~~~~--~ps~~~v~---~ll~~~~~~~VRly~~d~----~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~ 98 (347)
-+..+|||+|+.++ |++.+++. ++|++.+ ..||+|++|| +|++|+...|+||+||||..+..+-+-+. +
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~-t 120 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEK-T 120 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHH-H
Confidence 35689999999875 89999985 4666663 3999999885 78999999999999999987654432222 2
Q ss_pred HHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCC
Q 019014 99 ANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSK 178 (347)
Q Consensus 99 a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~ 178 (347)
+...+.++..++.|++|+||||.|+|++. ++++|+.+|..+|++|+++|++ .||+|+++|.+|.+ .|
T Consensus 121 ----il~ay~~~~~~d~v~~v~VGnEal~r~~~---tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-np--- 187 (305)
T COG5309 121 ----ILSAYLPYNGWDDVTTVTVGNEALNRNDL---TASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-NP--- 187 (305)
T ss_pred ----HHHHHhccCCCCceEEEEechhhhhcCCC---CHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC-Ch---
Confidence 44567788889999999999999999998 8999999999999999999995 59999999999876 22
Q ss_pred cccCcccchhhhHHHHHHhhcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHH
Q 019014 179 GTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEK 258 (347)
Q Consensus 179 g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~ 258 (347)
.||++.|++|+|.||||+.+... .+.+ .++..|+.-++++
T Consensus 188 ----------------~l~~~SDfia~N~~aYwd~~~~a-----------------~~~~----~f~~~q~e~vqsa--- 227 (305)
T COG5309 188 ----------------ELCQASDFIAANAHAYWDGQTVA-----------------NAAG----TFLLEQLERVQSA--- 227 (305)
T ss_pred ----------------HHhhhhhhhhcccchhccccchh-----------------hhhh----HHHHHHHHHHHHh---
Confidence 28889999999999999963221 1211 2333456655443
Q ss_pred hCCCCCcEEEeecccCCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCC--CCCCcee
Q 019014 259 AGGGSLRIVVSESGWPTAGGT----AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGS--EYEKHWG 332 (347)
Q Consensus 259 ~g~~~~~vvV~EtGWPS~G~~----~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~--~~E~~wG 332 (347)
+..+++++|+||||||.|.. .||++||++|+++++|.++ +.+.++|+||+|||+||..+ ++|+|||
T Consensus 228 -~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~~G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 228 -CGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------SCGYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred -cCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------ccCccEEEeeeccccccCccccchhhcee
Confidence 33459999999999999985 8999999999999999884 23799999999999999753 7999999
Q ss_pred eecCCC
Q 019014 333 LFLPNK 338 (347)
Q Consensus 333 lf~~d~ 338 (347)
+++.||
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.11 E-value=4.5e-09 Score=102.56 Aligned_cols=245 Identities=18% Similarity=0.238 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCCCCeEEEe---cC------C-c---chHHHHhcCCCeEEEecCCCch---------h------hHHHhH
Q 019014 45 EQEVVSLYKQTNIQRMRLY---AP------N-Q---ATLQALRGSNIELLLGVPNSDL---------Q------NVAASQ 96 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly---~~------d-~---~vl~A~~~~gi~v~lGv~~~~~---------~------~~a~~~ 96 (347)
.+++.++||.+|++.||+- ++ | . ...+.+++.||+|+|-+--+|- + ++++=.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3678999999999988775 11 1 1 3445567799999998765421 0 111111
Q ss_pred HHHHHHHHhhccccC-CCceEEEEEecceeccC---CCCccccHHHHHHHHHHHHHHHHHcCCCCceeEee--eeecccc
Q 019014 97 ANANSWVQNNVGDYA-NGVKFRYIAVGNEVSPL---NGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVST--AIDTRVL 170 (347)
Q Consensus 97 ~~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~---~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT--~~~~~~~ 170 (347)
++..++.+.-+..+. -+...+.|-||||+-.. ........+.+...++...+++|+.+- ++||-. +...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~~~~~~- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLANGGDN- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES-TTSH-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEECCCCch-
Confidence 222222222222110 14678899999996542 111012577888888888888888654 345433 211110
Q ss_pred cccCCCCCcccCcccchhhhHHHHHHhh---cCCceeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHH
Q 019014 171 GDASPPSKGTFRPDVRRFLDPVIRFLVD---NQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDA 247 (347)
Q Consensus 171 ~~s~PPS~g~F~~~~~~~~~~~l~fL~~---~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda 247 (347)
..++-..+.|.. .=|.++++.||||... -+.+..
T Consensus 183 ----------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~---------------------------l~~l~~ 219 (332)
T PF07745_consen 183 ----------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT---------------------------LEDLKN 219 (332)
T ss_dssp ----------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST----------------------------HHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCcceEEEecCCCCcch---------------------------HHHHHH
Confidence 111122222222 3389999999999840 012222
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeecccCCCCCC-----------------CCCHHHHHHHHHHHHHhccCCCCCCCCCcce
Q 019014 248 ILDAVYAALEKAGGGSLRIVVSESGWPTAGGT-----------------AASVDNARTYNSNLIQHVKGGTPRKPGSAIE 310 (347)
Q Consensus 248 ~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~-----------------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~ 310 (347)
.++.+ .++ | +|+|+|.|||||..-.. .+|++.|+.|++++++.+.. .|. +++.-
T Consensus 220 ~l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~G 290 (332)
T PF07745_consen 220 NLNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLG 290 (332)
T ss_dssp HHHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEE
T ss_pred HHHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEE
Confidence 23322 233 3 59999999999998211 36899999999999998742 221 34677
Q ss_pred EEEEEee-cCC-----CCCCCCCCCceeeecCCCCceeecc
Q 019014 311 TYVFAMF-DEN-----QKQGSEYEKHWGLFLPNKQPKYSIN 345 (347)
Q Consensus 311 ~y~F~~F-De~-----wK~g~~~E~~wGlf~~d~~~ky~l~ 345 (347)
+|+-|.- -.. |..|...|.. +||+.+|++--.|+
T Consensus 291 vfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 291 VFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp EEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred EEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 7776632 211 1222345555 99999998866554
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.93 E-value=1.5e-08 Score=97.35 Aligned_cols=195 Identities=19% Similarity=0.288 Sum_probs=101.3
Q ss_pred eeEEecCCCC-------C-CCC---HHHHHHHHhcCCCCeEEEecCCc-----chHHHHhcCCCeEEEecCCCchhhHHH
Q 019014 31 TGVCYGRDGT-------G-LPS---EQEVVSLYKQTNIQRMRLYAPNQ-----ATLQALRGSNIELLLGVPNSDLQNVAA 94 (347)
Q Consensus 31 ~Gi~Yg~~~~-------~-~ps---~~~v~~ll~~~~~~~VRly~~d~-----~vl~A~~~~gi~v~lGv~~~~~~~~a~ 94 (347)
.||.|-|-++ + |-. -++.+.+||+.|++.||+|+.|+ .-+++|++.||-|++.+.... .++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-ccccC
Confidence 6999998766 2 111 24567799999999999999985 468999999999999988652 22221
Q ss_pred h-H------HHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeec
Q 019014 95 S-Q------ANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDT 167 (347)
Q Consensus 95 ~-~------~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~ 167 (347)
+ + .-..+ +.+-|..|..-+++-+..+|||++..... +..++.+-.+++.+|+-+++.++ ++|||+-+-+-
T Consensus 109 ~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~-t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsaaD 185 (314)
T PF03198_consen 109 SDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASN-TNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSAAD 185 (314)
T ss_dssp TS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT--GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCC-cccHHHHHHHHHHHHHHHHhcCC-CCCceeEEccC
Confidence 1 1 11111 22223333333789999999999976432 12577888899999999999998 56999876421
Q ss_pred ccccccCCCCCcccCcccchhhhHHHHHHh-----hcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchh
Q 019014 168 RVLGDASPPSKGTFRPDVRRFLDPVIRFLV-----DNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYR 242 (347)
Q Consensus 168 ~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~-----~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~ 242 (347)
+ ...-.++.++|. +..|++++|.|-|=.. ..|+.+ .|.
T Consensus 186 -~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~-----------Stf~~S---------Gy~ 228 (314)
T PF03198_consen 186 -D----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD-----------STFETS---------GYD 228 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS-------------HHHH---------SHH
T ss_pred -C----------------hhHHHHHHHHhcCCCcccccceeeeccceecCC-----------Cccccc---------cHH
Confidence 1 012234556654 3558899999865321 122211 244
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCC
Q 019014 243 NLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAG 277 (347)
Q Consensus 243 n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G 277 (347)
.+.+. . .++ .+||..+|.|--+..
T Consensus 229 ~l~~~--------f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 229 RLTKE--------F--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHHHH--------H--TT--SS-EEEEEE---SSS
T ss_pred HHHHH--------h--hCC-CCCeEEcccCCCCCC
Confidence 44321 2 234 699999999997654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=4.7e-06 Score=79.32 Aligned_cols=249 Identities=18% Similarity=0.276 Sum_probs=137.2
Q ss_pred CHHHHHHHHhcCCCCeEEEe------cCCc--------------chHHHHhcCCCeEEEecCCCch---hh---------
Q 019014 44 SEQEVVSLYKQTNIQRMRLY------APNQ--------------ATLQALRGSNIELLLGVPNSDL---QN--------- 91 (347)
Q Consensus 44 s~~~v~~ll~~~~~~~VRly------~~d~--------------~vl~A~~~~gi~v~lGv~~~~~---~~--------- 91 (347)
-.+++.++||.+|++.|||- +.|. ++-+.+++.||||++-.--+|- +.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~ 143 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWE 143 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhh
Confidence 36788899999999988773 4441 2344456789999998764431 11
Q ss_pred ---HHHhHHHHHHHHHhhccccC-CCceEEEEEecceeccC-----CCCccccHHHHHHHHHHHHHHHHHcCCCCceeEe
Q 019014 92 ---VAASQANANSWVQNNVGDYA-NGVKFRYIAVGNEVSPL-----NGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVS 162 (347)
Q Consensus 92 ---~a~~~~~a~~wv~~~v~~~~-~~~~I~~I~VGNEvl~~-----~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~Vs 162 (347)
..+-..+.-+.-+.-+.... -+..+..+=||||.-.. ++. ...+.+...++.--.+++...- .|||-
T Consensus 144 ~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~--~~f~k~a~L~n~g~~avrev~p--~ikv~ 219 (403)
T COG3867 144 NLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEG--RNFDKMAALLNAGIRAVREVSP--TIKVA 219 (403)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCC--cChHHHHHHHHHHhhhhhhcCC--CceEE
Confidence 11111111111011111110 13456789999997532 221 1345666666666666666443 46665
Q ss_pred eeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchh
Q 019014 163 TAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYR 242 (347)
Q Consensus 163 T~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~ 242 (347)
--. .+ |-..+.|+--+...-+.-++| |.++.--||||...-+ + .+
T Consensus 220 lHl-----a~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~-------------------n----L~ 264 (403)
T COG3867 220 LHL-----AE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN-------------------N----LT 264 (403)
T ss_pred EEe-----cC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH-------------------H----HH
Confidence 432 22 212233331111222222333 7889999999996211 0 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeeccc--------------CCCCCC---CCCHHHHHHHHHHHHHhccCCCCCCC
Q 019014 243 NLFDAILDAVYAALEKAGGGSLRIVVSESGW--------------PTAGGT---AASVDNARTYNSNLIQHVKGGTPRKP 305 (347)
Q Consensus 243 n~fda~vDa~~~al~~~g~~~~~vvV~EtGW--------------PS~G~~---~as~~na~~y~~~lv~~~~~gTp~rp 305 (347)
+.++.+-+ + | +|.|+|.||+. |+.+.. ..+++-|.+|.+.+++.+. .+|...
T Consensus 265 ~nl~dia~-------r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~~ 333 (403)
T COG3867 265 TNLNDIAS-------R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKSN 333 (403)
T ss_pred hHHHHHHH-------H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCCC
Confidence 22222222 1 2 68999999998 776653 5778999999999998873 122221
Q ss_pred CCcceEEEEE-------------------eecCCCCCCCCCCCceeeecCCCCceeecc
Q 019014 306 GSAIETYVFA-------------------MFDENQKQGSEYEKHWGLFLPNKQPKYSIN 345 (347)
Q Consensus 306 ~~~~~~y~F~-------------------~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~ 345 (347)
+.-+|+.| .-.|+|+.|..++.. -||+-+|.|-.+|+
T Consensus 334 --GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 334 --GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred --ceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 23344333 234677765444433 78888988876654
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.31 E-value=0.00019 Score=75.70 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=132.5
Q ss_pred HHHHHHhcCCCCeEEEec--CCcchHHHHhcCCCeEEEecCCC---------------chhhHH------HhHHHHHHHH
Q 019014 47 EVVSLYKQTNIQRMRLYA--PNQATLQALRGSNIELLLGVPNS---------------DLQNVA------ASQANANSWV 103 (347)
Q Consensus 47 ~v~~ll~~~~~~~VRly~--~d~~vl~A~~~~gi~v~lGv~~~---------------~~~~~a------~~~~~a~~wv 103 (347)
+.+++||..|++.||+-. .++..+.+|-+.||-|+.=++.- +..... ...++..+-+
T Consensus 317 ~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (604)
T PRK10150 317 HDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAI 396 (604)
T ss_pred HHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 346789999999999942 24689999999999988544211 000000 1112222224
Q ss_pred HhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCc
Q 019014 104 QNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRP 183 (347)
Q Consensus 104 ~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~ 183 (347)
++.|..+.....|..=++|||.-... +..-..++.+.+.+++..= +=+|+.+..+. .+|..
T Consensus 397 ~~mv~r~~NHPSIi~Ws~gNE~~~~~-------~~~~~~~~~l~~~~k~~Dp--tR~vt~~~~~~-----~~~~~----- 457 (604)
T PRK10150 397 RELIARDKNHPSVVMWSIANEPASRE-------QGAREYFAPLAELTRKLDP--TRPVTCVNVMF-----ATPDT----- 457 (604)
T ss_pred HHHHHhccCCceEEEEeeccCCCccc-------hhHHHHHHHHHHHHHhhCC--CCceEEEeccc-----CCccc-----
Confidence 44455443334677899999964321 1222344555555555443 33677654211 01100
Q ss_pred ccchhhhHHHHHHhhcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCCCC
Q 019014 184 DVRRFLDPVIRFLVDNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGGGS 263 (347)
Q Consensus 184 ~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~~~ 263 (347)
.. +....|+++.|.|+=|-. +..+.. .....++..++.. .+ .+ +
T Consensus 458 ---~~-------~~~~~Dv~~~N~Y~~wy~--~~~~~~------------------~~~~~~~~~~~~~----~~-~~-~ 501 (604)
T PRK10150 458 ---DT-------VSDLVDVLCLNRYYGWYV--DSGDLE------------------TAEKVLEKELLAW----QE-KL-H 501 (604)
T ss_pred ---cc-------ccCcccEEEEcccceecC--CCCCHH------------------HHHHHHHHHHHHH----HH-hc-C
Confidence 00 223457799998753321 100000 0112222222221 11 13 8
Q ss_pred CcEEEeecccCCCC------CCCCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCC--CCCCceeeec
Q 019014 264 LRIVVSESGWPTAG------GTAASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGS--EYEKHWGLFL 335 (347)
Q Consensus 264 ~~vvV~EtGWPS~G------~~~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~--~~E~~wGlf~ 335 (347)
+|++++|.|+.+.- ...-|.+.|..|++...+.+.+ +|. -.-.|+..+||-....+. .-..+.||++
T Consensus 502 kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~ 576 (604)
T PRK10150 502 KPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPA-VVGEQVWNFADFATSQGILRVGGNKKGIFT 576 (604)
T ss_pred CCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCc-eEEEEEEeeeccCCCCCCcccCCCcceeEc
Confidence 99999999976532 1245788999888877776642 454 567899999995554321 1234789999
Q ss_pred CCCCceee
Q 019014 336 PNKQPKYS 343 (347)
Q Consensus 336 ~d~~~ky~ 343 (347)
.||+||-.
T Consensus 577 ~dr~~k~~ 584 (604)
T PRK10150 577 RDRQPKSA 584 (604)
T ss_pred CCCCChHH
Confidence 99999964
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.23 E-value=8.9e-05 Score=69.27 Aligned_cols=125 Identities=18% Similarity=0.067 Sum_probs=77.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCeEEEecC-------C-------------cchHHHHhcCCCeEEEecCCC---
Q 019014 31 TGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAP-------N-------------QATLQALRGSNIELLLGVPNS--- 87 (347)
Q Consensus 31 ~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~-------d-------------~~vl~A~~~~gi~v~lGv~~~--- 87 (347)
.|+|-. +.+.. ..++.++.+++.|++.|||.=. + ..+|+++++.||+|+|.+...
T Consensus 11 ~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w 88 (281)
T PF00150_consen 11 RGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGW 88 (281)
T ss_dssp EEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTC
T ss_pred eeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 455554 22222 7788899999999999999711 1 157888999999999988763
Q ss_pred ---c--hhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCC---ccccHHHHHHHHHHHHHHHHHcCCCC
Q 019014 88 ---D--LQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGE---TTQYVSFLLPAMQNIRNAILAAGLGN 157 (347)
Q Consensus 88 ---~--~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~---~~~~~~~l~~~m~~v~~aL~~~gl~~ 157 (347)
+ ............+.+..-...|.....|.++=+.||+...... .......+.+.++.+.+++++.+-..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 89 ANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp SSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 1 1111111111112111111223233457799999999875321 00124778899999999999998753
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.69 E-value=0.006 Score=57.38 Aligned_cols=188 Identities=19% Similarity=0.154 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhccccCCCceEEEEEecceeccCCCC--ccccHHHHH--HHHHHHHHHHHHcCCCCceeEeeeeeccccc
Q 019014 96 QANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGE--TTQYVSFLL--PAMQNIRNAILAAGLGNQIKVSTAIDTRVLG 171 (347)
Q Consensus 96 ~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~--~~~~~~~l~--~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~ 171 (347)
.++..++|.+.+..| ...|..+=|.||.+..+.. ........+ .+|...-+..+++.- ++++-.-+ +++..
T Consensus 56 ~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P--~a~l~~Nd-y~~~~ 130 (254)
T smart00633 56 LARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADP--DAKLFYND-YNTEE 130 (254)
T ss_pred HHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCC--CCEEEEec-cCCcC
Confidence 455667777777766 3568899999999864310 000121222 344444444444432 34544422 22221
Q ss_pred ccCCCCCcccCcccchhhhHHHHHHhhcCCc---eeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHH
Q 019014 172 DASPPSKGTFRPDVRRFLDPVIRFLVDNQAP---LLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAI 248 (347)
Q Consensus 172 ~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~---~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~ 248 (347)
++. -...+..+++.|.+.+-+ +++..| |.. ..| +
T Consensus 131 ---~~~-------k~~~~~~~v~~l~~~g~~iDgiGlQ~H--~~~-~~~-------------------------~----- 167 (254)
T smart00633 131 ---PNA-------KRQAIYELVKKLKAKGVPIDGIGLQSH--LSL-GSP-------------------------N----- 167 (254)
T ss_pred ---ccH-------HHHHHHHHHHHHHHCCCccceeeeeee--ecC-CCC-------------------------C-----
Confidence 110 012345566666665443 222222 110 000 0
Q ss_pred HHHHHHHHHHhCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecC-CCCCCCCC
Q 019014 249 LDAVYAALEKAGGGSLRIVVSESGWPTAGGTAASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDE-NQKQGSEY 327 (347)
Q Consensus 249 vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~ 327 (347)
++.+.+.|++++-.++||.|||.+-|..+ +++.|+.+++.++..+.+ .|. ...+++..+.|. .|.+
T Consensus 168 ~~~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~----~p~-v~gi~~Wg~~d~~~W~~---- 234 (254)
T smart00633 168 IAEIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLA----HPA-VTGVTVWGVTDKYSWLD---- 234 (254)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHc----CCC-eeEEEEeCCccCCcccC----
Confidence 11233334444444899999999999863 448888999999887742 232 344556666653 4544
Q ss_pred CCceeeecCCCCceeec
Q 019014 328 EKHWGLFLPNKQPKYSI 344 (347)
Q Consensus 328 E~~wGlf~~d~~~ky~l 344 (347)
+.+-|||+.|++||-..
T Consensus 235 ~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 235 GGAPLLFDANYQPKPAY 251 (254)
T ss_pred CCCceeECCCCCCChhh
Confidence 25779999999998654
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.21 E-value=0.045 Score=52.45 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=36.1
Q ss_pred eeEEecCCCCC---CCCHHHH---HHHHhcCCCCeEEEecC--CcchHHHHhcCCCeEEEecCC
Q 019014 31 TGVCYGRDGTG---LPSEQEV---VSLYKQTNIQRMRLYAP--NQATLQALRGSNIELLLGVPN 86 (347)
Q Consensus 31 ~Gi~Yg~~~~~---~ps~~~v---~~ll~~~~~~~VRly~~--d~~vl~A~~~~gi~v~lGv~~ 86 (347)
.|+|+...... .++.++. ++++|+.|++.||+... ++..+.+|-+.||-|+..++.
T Consensus 18 ~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 58998865332 2444443 56889999999999633 468999999999999977765
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.10 E-value=0.024 Score=52.98 Aligned_cols=212 Identities=14% Similarity=0.138 Sum_probs=116.5
Q ss_pred CCCeEEEecCCcchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCcccc
Q 019014 56 NIQRMRLYAPNQATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQY 135 (347)
Q Consensus 56 ~~~~VRly~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~ 135 (347)
+++-.=-|++.+. ......+++-+-.+|.....+ ...... +++. ...++.|..=||.=..... ..+
T Consensus 19 ~~sW~YnW~~~~~--~~~~~~~~efvPmlwg~~~~~-~~~~~~----v~~~------~~~~~~ll~fNEPD~~~qs-n~~ 84 (239)
T PF11790_consen 19 NVSWYYNWGSSPS--GSLDSAGLEFVPMLWGPGSDD-DDWLAN----VQNA------HPGSKHLLGFNEPDLPGQS-NMS 84 (239)
T ss_pred CcEEEeCCCCCCC--CCCCCCceeEeecccCCCCCc-hHHHHH----HHhh------ccCccceeeecCCCCCCCC-CCC
Confidence 3666544444431 111222377888888654332 111111 2222 2467889999998554321 237
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHh--hcCCceeeecCccccc
Q 019014 136 VSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLV--DNQAPLLVNLYPYISY 213 (347)
Q Consensus 136 ~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~--~~~d~~~vNiyPff~~ 213 (347)
+++.+...++..+.|+.. .+++..+..-.. ...+|+. .+-+...++-+. ...|++.+|.| ..
T Consensus 85 p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~~--~~~~~~g-------~~Wl~~F~~~~~~~~~~D~iavH~Y---~~ 148 (239)
T PF11790_consen 85 PEEAAALWKQYMNPLRSP----GVKLGSPAVAFT--NGGTPGG-------LDWLSQFLSACARGCRVDFIAVHWY---GG 148 (239)
T ss_pred HHHHHHHHHHHHhHhhcC----CcEEECCeeccc--CCCCCCc-------cHHHHHHHHhcccCCCccEEEEecC---Cc
Confidence 888888888887777742 467776642100 0001111 123444333221 24566655555 11
Q ss_pred cCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHH
Q 019014 214 IGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAGGTAASVDNARTYNSNL 293 (347)
Q Consensus 214 ~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~~as~~na~~y~~~l 293 (347)
+. .-|...++.+ .++.| +||+|||.|+.. +....+.++++.|++..
T Consensus 149 --~~-------------------------~~~~~~i~~~---~~~~~---kPIWITEf~~~~-~~~~~~~~~~~~fl~~~ 194 (239)
T PF11790_consen 149 --DA-------------------------DDFKDYIDDL---HNRYG---KPIWITEFGCWN-GGSQGSDEQQASFLRQA 194 (239)
T ss_pred --CH-------------------------HHHHHHHHHH---HHHhC---CCEEEEeecccC-CCCCCCHHHHHHHHHHH
Confidence 00 1122334433 33433 999999999877 44578999999999999
Q ss_pred HHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCceeeecCCCCc
Q 019014 294 IQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWGLFLPNKQP 340 (347)
Q Consensus 294 v~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ 340 (347)
+..+.+ ++. --.+++|. |-..+. ....+-.|++.+|++
T Consensus 195 ~~~ld~----~~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 195 LPWLDS----QPY-VERYAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred HHHHhc----CCC-eeEEEecc-cccccC---CCccccccccCCCCc
Confidence 999842 333 45688888 332332 346666777777754
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=97.06 E-value=0.087 Score=53.55 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=43.6
Q ss_pred CCCCcEEEeecccCCCCCC-------CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecC-CCCCCCCCCCcee
Q 019014 261 GGSLRIVVSESGWPTAGGT-------AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKHWG 332 (347)
Q Consensus 261 ~~~~~vvV~EtGWPS~G~~-------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wG 332 (347)
|.+.||+|||.|+...... .-=+.--+.+++.+.+.+..|-+. .-++.-++.|- .|. .+..+.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~ew~--~gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNFEWA--EGYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEecccccccchh--cccccccc
Confidence 5456899999999754321 111222344444444444445442 34777888883 343 35899999
Q ss_pred eecCCCC
Q 019014 333 LFLPNKQ 339 (347)
Q Consensus 333 lf~~d~~ 339 (347)
|++-|+.
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9999844
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=96.75 E-value=0.19 Score=49.80 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCCeEEEecCC----------------cchHHHHhcCCCeEEEecCCCchhh-----------------
Q 019014 45 EQEVVSLYKQTNIQRMRLYAPN----------------QATLQALRGSNIELLLGVPNSDLQN----------------- 91 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly~~d----------------~~vl~A~~~~gi~v~lGv~~~~~~~----------------- 91 (347)
-++.++++|..|++.|||.... ..+|+.+++.||+|+|+++....+.
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 4677889999999999984221 1588889999999999997431110
Q ss_pred ---------H----HHhHHHHHHHHHhhccccCCCceEEEEEecceecc
Q 019014 92 ---------V----AASQANANSWVQNNVGDYANGVKFRYIAVGNEVSP 127 (347)
Q Consensus 92 ---------~----a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 127 (347)
. ..-.+.+.+.+.+-+..|.....|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 01134455655555555644567999999999644
No 13
>PLN02998 beta-glucosidase
Probab=95.58 E-value=0.72 Score=47.90 Aligned_cols=73 Identities=16% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCCCcEEEeecccCCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCceeeecC
Q 019014 261 GGSLRIVVSESGWPTAGGT----AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWGLFLP 336 (347)
Q Consensus 261 ~~~~~vvV~EtGWPS~G~~----~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~ 336 (347)
+++.||+|||-|+....+. .-=++.-+.+++.+.+.+..|-+- .-+|.-++.| ++--..+.++.|||++-
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V-----~GY~~WSl~D-nfEW~~Gy~~RfGLv~V 463 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDV-----KGYFQWSLMD-VFELFGGYERSFGLLYV 463 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchh-hhchhccccCccceEEE
Confidence 5455899999999875321 122333455555555555455442 3477788888 33222358999999998
Q ss_pred CCC
Q 019014 337 NKQ 339 (347)
Q Consensus 337 d~~ 339 (347)
|..
T Consensus 464 D~~ 466 (497)
T PLN02998 464 DFK 466 (497)
T ss_pred CCC
Confidence 754
No 14
>PLN02814 beta-glucosidase
Probab=95.44 E-value=1.9 Score=44.96 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCCCcEEEeecccCCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecC-CCCCCCCCCCceeeec
Q 019014 261 GGSLRIVVSESGWPTAGGT----AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKHWGLFL 335 (347)
Q Consensus 261 ~~~~~vvV~EtGWPS~G~~----~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wGlf~ 335 (347)
+++.||+|||-|++...+. .-=++.-+.+++.+.+.+..|-|- .-+|.-++.|- .|. .+.++.|||++
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V-----~GY~~WSllDnfEW~--~Gy~~RfGLvy 457 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDT-----RGYFVWSMIDLYELL--GGYTTSFGMYY 457 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhhhchh--ccccCccceEE
Confidence 5556899999999754321 122233345555555555455443 34778888882 343 35899999999
Q ss_pred CCCC
Q 019014 336 PNKQ 339 (347)
Q Consensus 336 ~d~~ 339 (347)
-|+.
T Consensus 458 VD~~ 461 (504)
T PLN02814 458 VNFS 461 (504)
T ss_pred ECCC
Confidence 9765
No 15
>PLN02849 beta-glucosidase
Probab=94.46 E-value=6.7 Score=40.88 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=45.8
Q ss_pred CCCCcEEEeecccCCCCCC------CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCceeee
Q 019014 261 GGSLRIVVSESGWPTAGGT------AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWGLF 334 (347)
Q Consensus 261 ~~~~~vvV~EtGWPS~G~~------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf 334 (347)
|++.||+|||-|++..... .-=++.-+.+++.+.+.+..|-+- .-+|.-++.| ++--..+.++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V-----~GY~~WSl~D-nfEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDT-----RGYFVWSFMD-LYELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchh-hhchhccccCccceE
Confidence 5555899999999865421 112233345555555555445442 3477888888 333223589999999
Q ss_pred cCCCC
Q 019014 335 LPNKQ 339 (347)
Q Consensus 335 ~~d~~ 339 (347)
+-|..
T Consensus 457 ~VD~~ 461 (503)
T PLN02849 457 SVNFS 461 (503)
T ss_pred EECCC
Confidence 98764
No 16
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=94.03 E-value=8.5 Score=39.80 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=45.3
Q ss_pred CcEEEeecccCCCCCC--------CCCHHHHHHHHHHHHHhcc-CCCCCCCCCcceEEEEEeecC-CCCCCCCCCCceee
Q 019014 264 LRIVVSESGWPTAGGT--------AASVDNARTYNSNLIQHVK-GGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKHWGL 333 (347)
Q Consensus 264 ~~vvV~EtGWPS~G~~--------~as~~na~~y~~~lv~~~~-~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wGl 333 (347)
+||+|||-|....... .-=+..-+.+++.+.+.+. .|-+- .-+|.-++.|- .|.. ++.++.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v-----~GY~~WSl~Dn~EW~~-G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVEL-----LGYTTWGCIDLVSAGT-GEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchHhhcccC-CCccCeece
Confidence 5899999999865432 1124445666666666653 55443 24777888873 2432 238999999
Q ss_pred ecCCCC
Q 019014 334 FLPNKQ 339 (347)
Q Consensus 334 f~~d~~ 339 (347)
++-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 999864
No 17
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.97 E-value=2.1 Score=48.37 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=54.5
Q ss_pred eeEEecCCCC---CCCCHHH---HHHHHhcCCCCeEEEecC--CcchHHHHhcCCCeEEEecCCC--c------hhhHHH
Q 019014 31 TGVCYGRDGT---GLPSEQE---VVSLYKQTNIQRMRLYAP--NQATLQALRGSNIELLLGVPNS--D------LQNVAA 94 (347)
Q Consensus 31 ~Gi~Yg~~~~---~~ps~~~---v~~ll~~~~~~~VRly~~--d~~vl~A~~~~gi~v~lGv~~~--~------~~~~a~ 94 (347)
.|+|+-.... ...++++ .++++|+.|++.||+-.. ++..+++|-+.||-|+--++.. . ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 4777543311 1234443 466899999999998633 2467999999999988753211 0 000001
Q ss_pred h---HHHHHHHHHhhccccCCCceEEEEEecceec
Q 019014 95 S---QANANSWVQNNVGDYANGVKFRYIAVGNEVS 126 (347)
Q Consensus 95 ~---~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl 126 (347)
+ .++..+-+.+.|..+.....|..=++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 1 1111222444444443334677888999974
No 18
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=92.73 E-value=0.084 Score=54.00 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=135.4
Q ss_pred HHHHHHHHhcCCCCeEEEe--------cC-----C-------cchHHHHhcCCCeEEEecCCCchhhHHH------h---
Q 019014 45 EQEVVSLYKQTNIQRMRLY--------AP-----N-------QATLQALRGSNIELLLGVPNSDLQNVAA------S--- 95 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly--------~~-----d-------~~vl~A~~~~gi~v~lGv~~~~~~~~a~------~--- 95 (347)
-++.++|||+.|++..|+= +. | .+++..+++.||+.+|.+.--+++.--. +
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 3678999999999998864 11 1 1689999999999999998665543111 1
Q ss_pred HHHHHHHHHhhccccCCCceEEEEEecceeccC-------CC--Ccccc-------HHHHHHHHHHHHHHHHHcCCCCce
Q 019014 96 QANANSWVQNNVGDYANGVKFRYIAVGNEVSPL-------NG--ETTQY-------VSFLLPAMQNIRNAILAAGLGNQI 159 (347)
Q Consensus 96 ~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~-------~~--~~~~~-------~~~l~~~m~~v~~aL~~~gl~~~i 159 (347)
+..-.+..+.-+..| ++.|+.-+.=||...- +. ..... ...++-+-..+.+++++.+- +.
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 111111112122233 3578888888997531 10 00001 22344455555666666664 35
Q ss_pred eEeeeeeccccc--ccCCCCC---------------------cccCcccc---------hhh-hHHHHHHhhcCCceeee
Q 019014 160 KVSTAIDTRVLG--DASPPSK---------------------GTFRPDVR---------RFL-DPVIRFLVDNQAPLLVN 206 (347)
Q Consensus 160 ~VsT~~~~~~~~--~s~PPS~---------------------g~F~~~~~---------~~~-~~~l~fL~~~~d~~~vN 206 (347)
+|+.++...... +..|+.. |.|.+.+. +.+ ..-+..|..+.|++++|
T Consensus 216 ~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiN 295 (455)
T PF00232_consen 216 KIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGIN 295 (455)
T ss_dssp EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEE
T ss_pred EEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhc
Confidence 677665543221 0011111 11110000 000 11233456789999999
Q ss_pred cCccccccCCC-Cccccccc---cccC---CceeccCCCc-chhhHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCCC
Q 019014 207 LYPYISYIGNT-RDIRLDFA---LFTS---DVVRVQDGQF-GYRNLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAGG 278 (347)
Q Consensus 207 iyPff~~~~~p-~~i~l~~A---lf~~---~~~~~~d~~~-~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~ 278 (347)
-|.=---...+ ......+. .+.. ......+.+. .|..-+-.++.- +.+ -|+++||+|||.|++....
T Consensus 296 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~----l~~-~Y~~~pI~ITENG~~~~~~ 370 (455)
T PF00232_consen 296 YYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRY----LKD-RYGNPPIYITENGIGDPDE 370 (455)
T ss_dssp ESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHH----HHH-HHTSSEEEEEEE---EETT
T ss_pred cccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhh----hcc-ccCCCcEEEeccccccccc
Confidence 98543332222 11111111 0100 0000111221 111222222211 211 2678999999999988775
Q ss_pred C-------CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCceeeecCC------CCceee
Q 019014 279 T-------AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWGLFLPN------KQPKYS 343 (347)
Q Consensus 279 ~-------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d------~~~ky~ 343 (347)
. .--+..-+.+++.+.+.+..|-+ -.-+|..++.| ++--..+..+.|||++-| |+||-+
T Consensus 371 ~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~-----V~GY~~WSl~D-n~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 371 VDDGKVDDDYRIDYLQDHLNQVLKAIEDGVN-----VRGYFAWSLLD-NFEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp CTTSHBSHHHHHHHHHHHHHHHHHHHHTT-E-----EEEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred ccccCcCcHHHHHHHHHHHHHHHhhhccCCC-----eeeEeeecccc-ccccccCccCccCceEEcCCCCcCeeeccH
Confidence 2 12223335555555555544433 23577888888 333224689999999999 777754
No 19
>PRK09936 hypothetical protein; Provisional
Probab=91.75 E-value=13 Score=35.93 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=43.1
Q ss_pred CCceeEEecCCCCC-CCCHH---HHHHHHhcCCCCeEEEe-----cCC--------cchHHHHhcCCCeEEEecCCCc
Q 019014 28 DAQTGVCYGRDGTG-LPSEQ---EVVSLYKQTNIQRMRLY-----APN--------QATLQALRGSNIELLLGVPNSD 88 (347)
Q Consensus 28 ~~~~Gi~Yg~~~~~-~ps~~---~v~~ll~~~~~~~VRly-----~~d--------~~vl~A~~~~gi~v~lGv~~~~ 88 (347)
.+.-|+=|-|...+ --+++ +..+.++..|++.+=+= +.| ...++++.+.||+|.||++-|.
T Consensus 19 ~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 19 QAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred hccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 34457779998765 34554 45566677898776542 223 2688999999999999999773
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=85.60 E-value=47 Score=34.26 Aligned_cols=252 Identities=14% Similarity=0.184 Sum_probs=115.1
Q ss_pred HHHHHHhcCCCCeEEEecCC-----------------------cchHHHHhcCCCeEEEecC--CCchhh-----H----
Q 019014 47 EVVSLYKQTNIQRMRLYAPN-----------------------QATLQALRGSNIELLLGVP--NSDLQN-----V---- 92 (347)
Q Consensus 47 ~v~~ll~~~~~~~VRly~~d-----------------------~~vl~A~~~~gi~v~lGv~--~~~~~~-----~---- 92 (347)
++..+.+..||+.||+.+.- -.++..+.+.||+-+|-+- ...+.+ .
T Consensus 44 ~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~ 123 (486)
T PF01229_consen 44 QLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKG 123 (486)
T ss_dssp HHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTE
T ss_pred HHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccC
Confidence 33344456789999987331 0477888899998865442 211110 0
Q ss_pred ----HHhHHH----HHHHHHhhccccCCCceEE--EEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEe
Q 019014 93 ----AASQAN----ANSWVQNNVGDYANGVKFR--YIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVS 162 (347)
Q Consensus 93 ----a~~~~~----a~~wv~~~v~~~~~~~~I~--~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~Vs 162 (347)
..+.++ ..++++.-+..| +...|+ ..=|=||.=...-......++-....+....+||+..= .++|+
T Consensus 124 ~~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vG 200 (486)
T PF01229_consen 124 NISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVG 200 (486)
T ss_dssp E-S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEE
T ss_pred CcCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCccc
Confidence 012222 223333333333 111111 34568885432111001445677788888888888753 68898
Q ss_pred eeeecccccccCCCCCcccCcccchhhhHHHHHHhh---cCCceeeecCccccccCCCCccccccccccCCceeccCCCc
Q 019014 163 TAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVD---NQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQF 239 (347)
Q Consensus 163 T~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~---~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~ 239 (347)
-+-. ..+. ...+...++|+.+ .-|++..|.||+=......+.. .....
T Consensus 201 Gp~~----~~~~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~----------~~~~~---- 251 (486)
T PF01229_consen 201 GPAF----AWAY-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENM----------YERIE---- 251 (486)
T ss_dssp EEEE----ETT------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-E----------EEEB-----
T ss_pred Cccc----cccH-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhH----------Hhhhh----
Confidence 7711 0000 1345666777654 3477788888863321111000 00000
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCCCC----CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEE---
Q 019014 240 GYRNLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAGGT----AASVDNARTYNSNLIQHVKGGTPRKPGSAIETY--- 312 (347)
Q Consensus 240 ~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~----~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y--- 312 (347)
....+++... -+...+...+.+++++.++| |.+.-.+ .-|.-+|+-..+++++..+ ..++.|
T Consensus 252 ~~~~~~~~~~-~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~syw 320 (486)
T PF01229_consen 252 DSRRLFPELK-ETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYW 320 (486)
T ss_dssp -HHHHHHHHH-HHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES
T ss_pred hHHHHHHHHH-HHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhcc
Confidence 1112222211 22233555678899999999 8876654 4555666666666776652 113332
Q ss_pred EEE-eecCCCCCCCCCCCceeeecCCCCce
Q 019014 313 VFA-MFDENQKQGSEYEKHWGLFLPNKQPK 341 (347)
Q Consensus 313 ~F~-~FDe~wK~g~~~E~~wGlf~~d~~~k 341 (347)
.|+ .|.|.--+...+-.-|||+..+|-+|
T Consensus 321 t~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 321 TFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp -SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred chhhhhhccCCCCCceecchhhhhccCCCc
Confidence 222 34443333345667799999998665
No 21
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=83.33 E-value=2.8 Score=43.14 Aligned_cols=186 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCc
Q 019014 100 NSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKG 179 (347)
Q Consensus 100 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g 179 (347)
.+.+..-|.+|--+..|.+-..-||.+.+.+. +...++...+.+.+-++..+=+.-|.|+-+. .-|.. |-|-.+
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~---s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~--sp~~~-~~pyN~ 196 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPI---SVNNFWDWSGEMYAYIKWLDDGHLVSVGDPA--SPWPQ-YAPYNA 196 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccC---ChhHHHHHHHHHHHHhhccCCCCeeecCCcC--Ccccc-cCCccc
Confidence 45666667777556678888889998876666 7889999999999999887764434444332 22322 212122
Q ss_pred ccCcccchhhhHHHHHHhhcCCceeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHh
Q 019014 180 TFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKA 259 (347)
Q Consensus 180 ~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~ 259 (347)
. .+.|+-+-|+||+|.. +| .....+ .|-. ..+|- -..+
T Consensus 197 r-----------------~~vDya~~hLY~hyd~--sl-~~r~s~---------------~yg~---~~l~i----~~~~ 234 (587)
T COG3934 197 R-----------------FYVDYAANHLYRHYDT--SL-VSRVST---------------VYGK---PYLDI----PTIM 234 (587)
T ss_pred c-----------------eeeccccchhhhhccC--Ch-hheeee---------------eecc---hhhcc----chhc
Confidence 1 2556788899997764 22 011000 1111 01110 0112
Q ss_pred CCCCCcEEEeecccCCCCCCCCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCC--CC--CCCCCceeeec
Q 019014 260 GGGSLRIVVSESGWPTAGGTAASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQK--QG--SEYEKHWGLFL 335 (347)
Q Consensus 260 g~~~~~vvV~EtGWPS~G~~~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK--~g--~~~E~~wGlf~ 335 (347)
| -+||+.-|-|-|++= ..+|.+.|.--+...+.-| +.+--..-|+=|-+--- +. ..-|-.|||.+
T Consensus 235 g--~~pV~leefGfsta~----g~e~s~ayfiw~~lal~~g-----gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIr 303 (587)
T COG3934 235 G--WQPVNLEEFGFSTAF----GQENSPAYFIWIRLALDTG-----GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIR 303 (587)
T ss_pred c--cceeeccccCCcccc----cccccchhhhhhhhHHhhc-----CCceEEEEecCCccCCCCCCCccccccceeeeec
Confidence 2 489999999999973 3344444433322222100 11222333333321111 11 35788999999
Q ss_pred CCCCceeec
Q 019014 336 PNKQPKYSI 344 (347)
Q Consensus 336 ~d~~~ky~l 344 (347)
.|+.+|++.
T Consensus 304 adgpek~~a 312 (587)
T COG3934 304 ADGPEKIDA 312 (587)
T ss_pred CCCchhhhH
Confidence 999999863
No 22
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=82.17 E-value=10 Score=37.51 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=74.9
Q ss_pred CCCeEEEecC-CcchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccc
Q 019014 56 NIQRMRLYAP-NQATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQ 134 (347)
Q Consensus 56 ~~~~VRly~~-d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~ 134 (347)
.+++|-+|+. |++++..+.+.|++|++..-.. .+.+ .+.+.-.+++++-| .+...-.+.+|-+==|-....+. .
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~--~ 129 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGS--P 129 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCc--c
Confidence 3688888854 5789999999999999764221 1222 33333334444332 22222245566665554332111 1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCcccc
Q 019014 135 YVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYIS 212 (347)
Q Consensus 135 ~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 212 (347)
..+.+...|+++|++|++.+.+- .+|.+..+. |+..... .+ -+.-|++..|++.+-.|=|..
T Consensus 130 d~~~~t~llkelr~~l~~~~~~~--~Lsvav~~~-------p~~~~~~-~y------d~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 130 EYYALTELVKETTKAFKKENPGY--QISFDVAWS-------PSCIDKR-CY------DYTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCc--EEEEEEecC-------ccccccc-cc------CHHHHHhhCCEeeEEeecccC
Confidence 35678899999999999886432 344432211 2111000 00 022366777889888887653
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=77.82 E-value=3.1 Score=42.91 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=44.8
Q ss_pred CCC-CcEEEeecccCCCCCC--C------CCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecC-CCCCCCCCCCc
Q 019014 261 GGS-LRIVVSESGWPTAGGT--A------ASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKH 330 (347)
Q Consensus 261 ~~~-~~vvV~EtGWPS~G~~--~------as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~ 330 (347)
+++ .||+|||.|+...... . -=+.--+.+++.+.+.+..|-+- .-+|.-++.|- .|. .+.++.
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~WSl~DnfEW~--~Gy~~R 437 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANV-----KGYFIWSLMDVFSWS--NGYEKR 437 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeecccccccchh--cCccCc
Confidence 555 5799999999754321 1 11223344555555554455443 34788888883 354 358999
Q ss_pred eeeecCCCC
Q 019014 331 WGLFLPNKQ 339 (347)
Q Consensus 331 wGlf~~d~~ 339 (347)
|||++-|.+
T Consensus 438 fGl~~VD~~ 446 (469)
T PRK13511 438 YGLFYVDFE 446 (469)
T ss_pred cceEEECCC
Confidence 999998753
No 24
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=74.54 E-value=18 Score=35.55 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=38.8
Q ss_pred chHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccC-----CCceEEEEEecceeccCCCCccccHHHHHHH
Q 019014 68 ATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYA-----NGVKFRYIAVGNEVSPLNGETTQYVSFLLPA 142 (347)
Q Consensus 68 ~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~-----~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~ 142 (347)
++.+-+..+|.+|+.|+---.-.....+...-..|=.+|...++ .+-+|.+-=.|||.-..+-....++.++...
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 34445567999999998743211111223444567666654432 1235667778999654321111267888888
Q ss_pred HHHHHHHHHHc
Q 019014 143 MQNIRNAILAA 153 (347)
Q Consensus 143 m~~v~~aL~~~ 153 (347)
..++|+.|+..
T Consensus 193 ~~~Lr~il~~i 203 (319)
T PF03662_consen 193 FIQLRKILNEI 203 (319)
T ss_dssp H---HHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 25
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=69.27 E-value=16 Score=26.59 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHhcCCCCeEEEecCC-----cchHHHHhcCCCeEEEecCC
Q 019014 42 LPSEQEVVSLYKQTNIQRMRLYAPN-----QATLQALRGSNIELLLGVPN 86 (347)
Q Consensus 42 ~ps~~~v~~ll~~~~~~~VRly~~d-----~~vl~A~~~~gi~v~lGv~~ 86 (347)
.-++++.++..+++|++.|=+=|.+ ....+.+++.||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3468899999999999999887776 24556667899999999864
No 26
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=67.95 E-value=28 Score=33.36 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=49.4
Q ss_pred cchHHHHhcCCCeEEEecCCCc--------hhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHH
Q 019014 67 QATLQALRGSNIELLLGVPNSD--------LQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSF 138 (347)
Q Consensus 67 ~~vl~A~~~~gi~v~lGv~~~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~ 138 (347)
+.+++++++.|+||++.|.+.. ...+..+.+.-.++++ ++..+...-.+.+|-+-=|.+... ....
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~~-----d~~~ 121 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPPE-----DREA 121 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCHH-----HHHH
Confidence 4788888889999998876532 1233334333233332 232222112455666655654322 3567
Q ss_pred HHHHHHHHHHHHHHcCC
Q 019014 139 LLPAMQNIRNAILAAGL 155 (347)
Q Consensus 139 l~~~m~~v~~aL~~~gl 155 (347)
.+..|+++|++|++.|+
T Consensus 122 ~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 122 YTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHhhhcCc
Confidence 88999999999987775
No 27
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=66.67 E-value=56 Score=37.22 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=55.1
Q ss_pred eeEEecCCCC---CCCCHHH---HHHHHhcCCCCeEEEecC--CcchHHHHhcCCCeEEEecCCC-----------chhh
Q 019014 31 TGVCYGRDGT---GLPSEQE---VVSLYKQTNIQRMRLYAP--NQATLQALRGSNIELLLGVPNS-----------DLQN 91 (347)
Q Consensus 31 ~Gi~Yg~~~~---~~ps~~~---v~~ll~~~~~~~VRly~~--d~~vl~A~~~~gi~v~lGv~~~-----------~~~~ 91 (347)
.|+|+-.... .-.++++ .++++|..|++.||+-.. ++..++.|-+.||-|+--++.. +.+.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 4777643321 1245554 466889999999999533 4578999999999988665431 0111
Q ss_pred HHHhHHHHHHHHHhhccccCCCceEEEEEeccee
Q 019014 92 VAASQANANSWVQNNVGDYANGVKFRYIAVGNEV 125 (347)
Q Consensus 92 ~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEv 125 (347)
. .++..+-+.+.|........|..=++|||.
T Consensus 433 ~---~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~ 463 (1027)
T PRK09525 433 W---LPAMSERVTRMVQRDRNHPSIIIWSLGNES 463 (1027)
T ss_pred H---HHHHHHHHHHHHHhCCCCCEEEEEeCccCC
Confidence 1 111222233444443333577889999996
No 28
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=64.23 E-value=16 Score=37.79 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCcEEEeecccCCCCCC--------CCCHHHHHHHHHHHHHhc-cCCCCCCCCCcceEEEEEeecC-CCCCCCCCCCcee
Q 019014 263 SLRIVVSESGWPTAGGT--------AASVDNARTYNSNLIQHV-KGGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKHWG 332 (347)
Q Consensus 263 ~~~vvV~EtGWPS~G~~--------~as~~na~~y~~~lv~~~-~~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wG 332 (347)
++||+|||-|....... .-=+..-+.+++.+.+.+ ..|-+- .-+|.-++.|- .|.. ++..+.||
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V-----~GY~~WSl~Dn~Ew~~-G~y~~RfG 440 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDL-----MGYTPWGCIDLVSAGT-GEMKKRYG 440 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCe-----EEEeeccccccccccC-Ccccccee
Confidence 36899999999854321 112334455666666665 455443 34788888883 3432 23789999
Q ss_pred eecCCCC
Q 019014 333 LFLPNKQ 339 (347)
Q Consensus 333 lf~~d~~ 339 (347)
|++-|..
T Consensus 441 lv~VD~~ 447 (476)
T PRK09589 441 FIYVDKD 447 (476)
T ss_pred eEEEcCC
Confidence 9998765
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.04 E-value=1.1e+02 Score=26.89 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCeEEE----------ecCC--------------cchHHHHhcCCCeEEEecCCC
Q 019014 46 QEVVSLYKQTNIQRMRL----------YAPN--------------QATLQALRGSNIELLLGVPNS 87 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRl----------y~~d--------------~~vl~A~~~~gi~v~lGv~~~ 87 (347)
++..+.|+..||+.|=+ |.++ ..+|+++.+.||||++|++.+
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 34567788888877622 2111 257888999999999999966
No 30
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=60.21 E-value=31 Score=30.52 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=44.1
Q ss_pred hHHHHhcC--CCeEEEecCCCchhh---HHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHH
Q 019014 69 TLQALRGS--NIELLLGVPNSDLQN---VAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAM 143 (347)
Q Consensus 69 vl~A~~~~--gi~v~lGv~~~~~~~---~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m 143 (347)
-++.+++. |+||++.+....... ++.+.+...+.++ ++..+...-.+.+|-+==|.....+. .....++..|
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~-~~~~~v~~~~~DGidiD~E~~~~~~~--~~~~~~~~ll 130 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFAN-SLVSFLKTYGFDGVDIDWEYPGAADN--SDRENFITLL 130 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHH-HHHHHHHHcCCCceEEeeeCCCCcCc--cHHHHHHHHH
Confidence 35555554 999998887543221 2333333222222 22222212245555554444322110 0257899999
Q ss_pred HHHHHHHHHcCC
Q 019014 144 QNIRNAILAAGL 155 (347)
Q Consensus 144 ~~v~~aL~~~gl 155 (347)
+++|++|.+.++
T Consensus 131 ~~lr~~l~~~~~ 142 (210)
T cd00598 131 RELRSALGAANY 142 (210)
T ss_pred HHHHHHhcccCc
Confidence 999999987655
No 31
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=59.70 E-value=9.7 Score=33.68 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=26.7
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
+++|+..|+++||+.+.+|.-+.++.+.||+|.=-+|
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 5799999999999999999999999999999975443
No 32
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=59.25 E-value=29 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHc
Q 019014 95 SQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAA 153 (347)
Q Consensus 95 ~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~ 153 (347)
...-...|+..||. .|+|.++.++.+......|+|+++..++.++..
T Consensus 9 ~L~iLi~WLedNi~------------~es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 9 ALEILIAWLEDNID------------CESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHHcccC------------CCCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 34567789998753 356666654332235678999999999887643
No 33
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.90 E-value=27 Score=34.98 Aligned_cols=55 Identities=22% Similarity=0.481 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCCCC------CCCHHHHHHHHHHHHHhc
Q 019014 240 GYRNLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAGGT------AASVDNARTYNSNLIQHV 297 (347)
Q Consensus 240 ~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~------~as~~na~~y~~~lv~~~ 297 (347)
.|.|-|++.+-..-....-.|++..+|+.+ |||.|.- ..|-..++.-+.++++.+
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~L 184 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYL 184 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHH
Confidence 356666644433322333456777888876 9999983 566666677777777766
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=54.26 E-value=30 Score=35.80 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCcEEEeecccCCCCCC--------CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCC-CCCCCceee
Q 019014 263 SLRIVVSESGWPTAGGT--------AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQG-SEYEKHWGL 333 (347)
Q Consensus 263 ~~~vvV~EtGWPS~G~~--------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g-~~~E~~wGl 333 (347)
++||+|+|-|....... .-=+..-+.+++.+.+.+..|-+- .-+|.-++.| ++--. +...+.|||
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V-----~GY~~WSl~D-n~Ew~~G~y~~RfGL 438 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPL-----MGYTTWGCID-LVSASTGEMSKRYGF 438 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEeecccc-cccccCCCccceeee
Confidence 36899999999854421 111233345555555555445442 3477788887 43322 337899999
Q ss_pred ecCCCC
Q 019014 334 FLPNKQ 339 (347)
Q Consensus 334 f~~d~~ 339 (347)
++-|.+
T Consensus 439 v~VD~~ 444 (474)
T PRK09852 439 VYVDRD 444 (474)
T ss_pred EEECCC
Confidence 999865
No 35
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=53.97 E-value=17 Score=32.86 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=29.9
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEE
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELL 81 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~ 81 (347)
.++|+..|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998877889999999987
No 36
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.44 E-value=17 Score=32.99 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=30.1
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEE
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELL 81 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~ 81 (347)
+++|+..|++++|+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998877889999999997
No 37
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=53.14 E-value=29 Score=35.75 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=44.2
Q ss_pred CCC-CcEEEeecccCCCCCC-------CCCHHHHHHHHHHHHHhccCCCCCCCCCcceEEEEEeecCCCCCCCCCCCcee
Q 019014 261 GGS-LRIVVSESGWPTAGGT-------AASVDNARTYNSNLIQHVKGGTPRKPGSAIETYVFAMFDENQKQGSEYEKHWG 332 (347)
Q Consensus 261 ~~~-~~vvV~EtGWPS~G~~-------~as~~na~~y~~~lv~~~~~gTp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wG 332 (347)
+++ .||+|||-|....... .-=++.-+.+++.+.+.+..|-+- .-+|.-++.| ++--..+..+.||
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v-----~GY~~WSl~D-n~Ew~~Gy~~RfG 437 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANV-----KGYFIWSLMD-VFSWSNGYEKRYG 437 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchh-hhchhccccCccc
Confidence 544 4699999999864421 112333455555555555444432 2366677777 4432246899999
Q ss_pred eecCCCC
Q 019014 333 LFLPNKQ 339 (347)
Q Consensus 333 lf~~d~~ 339 (347)
|++-|+.
T Consensus 438 Lv~VD~~ 444 (467)
T TIGR01233 438 LFYVDFD 444 (467)
T ss_pred eEEECCC
Confidence 9998754
No 38
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=52.60 E-value=1.5e+02 Score=28.19 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHhcCCCCeEEEecCC--c-----chHHH---HhcCCCeEEEecCCCch---hhHHHhHHHHHHHHHhhc
Q 019014 41 GLPSEQEVVSLYKQTNIQRMRLYAPN--Q-----ATLQA---LRGSNIELLLGVPNSDL---QNVAASQANANSWVQNNV 107 (347)
Q Consensus 41 ~~ps~~~v~~ll~~~~~~~VRly~~d--~-----~vl~A---~~~~gi~v~lGv~~~~~---~~~a~~~~~a~~wv~~~v 107 (347)
+.+++.+.++-|+..|+++|-+-++. + .+.+. ++..--++.+|-|.=.. .+...+..+..+-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 57999999999999999999999877 1 34333 34344589999886331 011234444333344443
Q ss_pred cccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccch
Q 019014 108 GDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRR 187 (347)
Q Consensus 108 ~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~ 187 (347)
..-.++.-+..+-=||+- ... .+-..++..|++.|.. ++-|+|.+. +|
T Consensus 136 ~~~~~~~a~vlmGHGt~h---------~an---~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P------------ 183 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPH---------PAN---AAYSALQAMLKKHGYP-NVFVGTVEG-------YP------------ 183 (262)
T ss_dssp -TT-TTEEEEEEE---SC---------HHH---HHHHHHHHHHHCCT-T-TEEEEETTS-------SS------------
T ss_pred cccCCCCEEEEEeCCCCC---------Ccc---HHHHHHHHHHHhCCCC-eEEEEEeCC-------CC------------
Confidence 322123333333334321 111 2345567888888874 589999752 43
Q ss_pred hhhHHHHHHhhcCCceeeecCccccc
Q 019014 188 FLDPVIRFLVDNQAPLLVNLYPYISY 213 (347)
Q Consensus 188 ~~~~~l~fL~~~~d~~~vNiyPff~~ 213 (347)
.+..++..|.+.+ +=-|.+.||.--
T Consensus 184 ~~~~vi~~L~~~g-~k~V~L~PlMlV 208 (262)
T PF06180_consen 184 SLEDVIARLKKKG-IKKVHLIPLMLV 208 (262)
T ss_dssp BHHHHHHHHHHHT--SEEEEEEESSS
T ss_pred CHHHHHHHHHhcC-CCeEEEEecccc
Confidence 2455666676544 345889999864
No 39
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=49.93 E-value=32 Score=35.13 Aligned_cols=104 Identities=12% Similarity=0.204 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCeEEEe--cCCc----------------chHHHHhcCCC-----eEEEecCCCchhhHHHhHHHHHHH
Q 019014 46 QEVVSLYKQTNIQRMRLY--APNQ----------------ATLQALRGSNI-----ELLLGVPNSDLQNVAASQANANSW 102 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d~----------------~vl~A~~~~gi-----~v~lGv~~~~~~~~a~~~~~a~~w 102 (347)
++.+++|+..|+++|-+= +.++ ..++.+++.|+ .+|.|+|.....++......+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 567788888888876442 2221 23444455554 478899987777665555543331
Q ss_pred HHhhcccc----CCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCC
Q 019014 103 VQNNVGDY----ANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLG 156 (347)
Q Consensus 103 v~~~v~~~----~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~ 156 (347)
=-++|.-| .|...-..-.+|.+.+ . +.+..+.-++.+.+.|.++|+.
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~l----p---~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAAL----P---DAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCC----c---CHHHHHHHHHHHHHHHHHCCCE
Confidence 11111111 0000000000111111 1 3456778888899999999994
No 40
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=49.60 E-value=1e+02 Score=30.40 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=51.0
Q ss_pred CCceeEEecCCCCCCCCHHHHHHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhc
Q 019014 28 DAQTGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNV 107 (347)
Q Consensus 28 ~~~~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v 107 (347)
...+|||.-...++ |..++.++.+...+.+.|=+..-++...+.+++.|++|+.-|+. ...|+.+.+..+
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga 124 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA 124 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC
Confidence 34678888554322 33455677666667777766655665578899999999988773 234444444332
Q ss_pred cccCCCceEEEEEeccee
Q 019014 108 GDYANGVKFRYIAVGNEV 125 (347)
Q Consensus 108 ~~~~~~~~I~~I~VGNEv 125 (347)
+. .|+-|.|.
T Consensus 125 ------D~--vVaqG~EA 134 (320)
T cd04743 125 ------RK--FIFEGREC 134 (320)
T ss_pred ------CE--EEEecCcC
Confidence 22 37789886
No 41
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=48.00 E-value=31 Score=35.66 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=44.3
Q ss_pred CCcEEEeecccCCCCCC--------CCCHHHHHHHHHHHHHhcc-CCCCCCCCCcceEEEEEeecC-CCCCCCCCCCcee
Q 019014 263 SLRIVVSESGWPTAGGT--------AASVDNARTYNSNLIQHVK-GGTPRKPGSAIETYVFAMFDE-NQKQGSEYEKHWG 332 (347)
Q Consensus 263 ~~~vvV~EtGWPS~G~~--------~as~~na~~y~~~lv~~~~-~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wG 332 (347)
++||+|||-|....... .-=++.-+.+++.+.+.+. .|-+- .-+|.-++.|- .|.. ++.++.||
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v-----~GY~~WSl~DnfEw~~-G~y~~RfG 441 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDL-----MGYTPWGCIDCVSFTT-GQYSKRYG 441 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhhhcccC-CCccCccc
Confidence 36899999999864421 1123334555666655553 55443 34778888883 3443 34899999
Q ss_pred eecCCCC
Q 019014 333 LFLPNKQ 339 (347)
Q Consensus 333 lf~~d~~ 339 (347)
|++-|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9988654
No 42
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=47.85 E-value=51 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhh-hHHHHHHhhcCCceeeec
Q 019014 141 PAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFL-DPVIRFLVDNQAPLLVNL 207 (347)
Q Consensus 141 ~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~-~~~l~fL~~~~d~~~vNi 207 (347)
.+++.+...+...|+.+ |++.+.... ++|. .+.. .++++.+.+.+=|+.+|+
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~~--------~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGG------FDPD--------DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETT------CCTT--------SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hHHHHHHHhccccceee-eEecCCCCc------cccc--------cHHHHHHHHHHHHhhccceeeec
Confidence 57888888888888864 777664311 1111 1233 488898888897777764
No 43
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=47.35 E-value=42 Score=31.07 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=22.1
Q ss_pred HHhCCCCCcEEEeecccCCCCCC------CCCHHHHHHHHHHHHHhc
Q 019014 257 EKAGGGSLRIVVSESGWPTAGGT------AASVDNARTYNSNLIQHV 297 (347)
Q Consensus 257 ~~~g~~~~~vvV~EtGWPS~G~~------~as~~na~~y~~~lv~~~ 297 (347)
..+++++.+|+ -.|||.|.. ..+...++..+..+++.+
T Consensus 43 ~~~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L 86 (233)
T PF05990_consen 43 HDLGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDL 86 (233)
T ss_pred HHhCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44566664444 469999984 234444455555555554
No 44
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.60 E-value=3e+02 Score=26.59 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCC-C-CCcccC--cccchhhhHHHHHHhhcCCceeeecCcc
Q 019014 135 YVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASP-P-SKGTFR--PDVRRFLDPVIRFLVDNQAPLLVNLYPY 210 (347)
Q Consensus 135 ~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~P-P-S~g~F~--~~~~~~~~~~l~fL~~~~d~~~vNiyPf 210 (347)
+.+++...++++|+. +||+..-.--.-|..... + .-|.|. ++--+..+.+++.|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 466777777777764 467666432112221100 0 112332 2222556789999999999999999999
Q ss_pred ccc
Q 019014 211 ISY 213 (347)
Q Consensus 211 f~~ 213 (347)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 873
No 45
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=44.38 E-value=48 Score=34.70 Aligned_cols=77 Identities=19% Similarity=0.428 Sum_probs=51.8
Q ss_pred CCCCCcEEEeecccCCCCCC----------CCCHHHHHHHHHHHHHhcc-CCCCCCCCCcceEEEEEeecC-CCCCCCCC
Q 019014 260 GGGSLRIVVSESGWPTAGGT----------AASVDNARTYNSNLIQHVK-GGTPRKPGSAIETYVFAMFDE-NQKQGSEY 327 (347)
Q Consensus 260 g~~~~~vvV~EtGWPS~G~~----------~as~~na~~y~~~lv~~~~-~gTp~rp~~~~~~y~F~~FDe-~wK~g~~~ 327 (347)
.|.|.+|.|+|-|-+...+. ..=++..+.|++++.+.+. .|- + ..-+|+.++-|- .|. .+.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv----n-v~GYf~WSLmDnfEw~--~Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV----N-VKGYFVWSLLDNFEWL--DGY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC----c-eeeEEEeEcccchhhh--cCc
Confidence 48899999999999987643 2334455667777766652 111 1 335889998883 344 367
Q ss_pred CCceeeecC------CCCceee
Q 019014 328 EKHWGLFLP------NKQPKYS 343 (347)
Q Consensus 328 E~~wGlf~~------d~~~ky~ 343 (347)
.-.|||++- .|.||-.
T Consensus 477 ~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 477 KVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred ccccccEEEeCCCCCcCCchhH
Confidence 789999995 4666644
No 46
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.37 E-value=25 Score=35.23 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEE
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLL 82 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~l 82 (347)
.++|+..|+++|||. .+|.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 679999999999999 678888889999999973
No 47
>PLN03059 beta-galactosidase; Provisional
Probab=43.86 E-value=5e+02 Score=29.11 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCCCeEEEecC------C------------cchHHHHhcCCCeEEEec---------------CCCchh--
Q 019014 46 QEVVSLYKQTNIQRMRLYAP------N------------QATLQALRGSNIELLLGV---------------PNSDLQ-- 90 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly~~------d------------~~vl~A~~~~gi~v~lGv---------------~~~~~~-- 90 (347)
.+.++.+|..|++.|-+|=. . ..-|+.+++.|+.|+|=. |.-..+
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i 141 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGI 141 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCc
Confidence 46677889999999999822 1 146788889999998732 221111
Q ss_pred ---h-HHHhHHHHHHHHHhhccc-----c--CCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCce
Q 019014 91 ---N-VAASQANANSWVQNNVGD-----Y--ANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQI 159 (347)
Q Consensus 91 ---~-~a~~~~~a~~wv~~~v~~-----~--~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i 159 (347)
+ -..-.++.++|+..-+.. + -.+..|..+=|-||-=.-... .-..=-.||+.++++++++|+ .|
T Consensus 142 ~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~---~~~~d~~Yl~~l~~~~~~~Gi--~V 216 (840)
T PLN03059 142 EFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWE---IGAPGKAYTKWAADMAVKLGT--GV 216 (840)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecc---cCcchHHHHHHHHHHHHHcCC--Cc
Confidence 1 112234566666543321 1 124578889999995221000 001225799999999999998 48
Q ss_pred eEeeeee
Q 019014 160 KVSTAID 166 (347)
Q Consensus 160 ~VsT~~~ 166 (347)
|.-|.+.
T Consensus 217 Pl~t~dg 223 (840)
T PLN03059 217 PWVMCKQ 223 (840)
T ss_pred ceEECCC
Confidence 8877764
No 48
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=43.26 E-value=30 Score=31.20 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=29.9
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEE
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELL 81 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~ 81 (347)
.++|+..|++++|+.+..+.=+.++.+.|++|+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998777889999999998
No 49
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.17 E-value=42 Score=28.28 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 47 EVVSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 47 ~v~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+..
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999888889999999999999999977
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=42.54 E-value=51 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.443 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCeEEEe--cCC---cchHHHHhcCCCeEEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--APN---QATLQALRGSNIELLL 82 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d---~~vl~A~~~~gi~v~l 82 (347)
+++.+.++..|++.|+++ +.. ..+|++++..|+++.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 445567778899999888 443 4799999999998753
No 51
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.77 E-value=78 Score=29.41 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=44.8
Q ss_pred chHHHHhcCCCeEEEecCCCch---hhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHH
Q 019014 68 ATLQALRGSNIELLLGVPNSDL---QNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQ 144 (347)
Q Consensus 68 ~vl~A~~~~gi~v~lGv~~~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~ 144 (347)
..++.+++.|+||++.|..... ..+..+.....+++++ +..+...-.+.+|-+==|-... ..+.....++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~------~~~~~~~fv~ 122 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV------TFGDYLVFIR 122 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc------cHhHHHHHHH
Confidence 4466777789999987765432 1233343333333332 2222111234555555454321 1246777899
Q ss_pred HHHHHHHHcCC
Q 019014 145 NIRNAILAAGL 155 (347)
Q Consensus 145 ~v~~aL~~~gl 155 (347)
++|++|++.|+
T Consensus 123 ~Lr~~l~~~~~ 133 (253)
T cd06545 123 ALYAALKKEGK 133 (253)
T ss_pred HHHHHHhhcCc
Confidence 99999987765
No 52
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.82 E-value=30 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.5
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEec
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGV 84 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv 84 (347)
.++|+..|+++|||.. +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6799999999999999 8888888999999997333
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.94 E-value=55 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=32.6
Q ss_pred CHHHHHHHHhcCCCCeEEEecCC-----------------------cchHHHHhcCCCeEEEecCCC
Q 019014 44 SEQEVVSLYKQTNIQRMRLYAPN-----------------------QATLQALRGSNIELLLGVPNS 87 (347)
Q Consensus 44 s~~~v~~ll~~~~~~~VRly~~d-----------------------~~vl~A~~~~gi~v~lGv~~~ 87 (347)
++++.++.||..+++.|-+|.-. .++++|+++.||+|++=+-..
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 36777888888778888776431 267899999999998776543
No 54
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=39.91 E-value=3.5e+02 Score=28.26 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=40.2
Q ss_pred HHHHhhccccC-CCceEEEEEecceeccC------CCCccccHHHHHHHHHH-HHHHHHHcCCCCceeEee
Q 019014 101 SWVQNNVGDYA-NGVKFRYIAVGNEVSPL------NGETTQYVSFLLPAMQN-IRNAILAAGLGNQIKVST 163 (347)
Q Consensus 101 ~wv~~~v~~~~-~~~~I~~I~VGNEvl~~------~~~~~~~~~~l~~~m~~-v~~aL~~~gl~~~i~VsT 163 (347)
+.+.+-|+.|- .+..|-+|.+.||.... -+....+++++...|++ +.-+|+++|++.++|+-.
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34445555552 25789999999999852 11112467888888886 999999999955688744
No 55
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=38.98 E-value=57 Score=25.26 Aligned_cols=50 Identities=10% Similarity=-0.086 Sum_probs=31.9
Q ss_pred CceEEEEEecce-eccCC-----CCccccHHHHHHHHHHHHHHHHHcCCCCceeEeee
Q 019014 113 GVKFRYIAVGNE-VSPLN-----GETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTA 164 (347)
Q Consensus 113 ~~~I~~I~VGNE-vl~~~-----~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~ 164 (347)
+.+|.+-=|+|| ..... .......+.+.+.|+++-..+++.+= .+|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 478999999999 55211 00001357899999999999998765 5788775
No 56
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.88 E-value=2.3e+02 Score=28.50 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCcccccc
Q 019014 135 YVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISYI 214 (347)
Q Consensus 135 ~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~ 214 (347)
+.+++...+++.|+. .||+..-..-.-|...+. .-.|.++.-+-++.+++.|.+.+=-++++++|+....
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHc--------CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 456777777777764 578877653333332221 1112222224578899999999999999999988752
Q ss_pred CCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCC----CCCcEEEeecccCCCCC-CCCCHHHHHHH
Q 019014 215 GNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGG----GSLRIVVSESGWPTAGG-TAASVDNARTY 289 (347)
Q Consensus 215 ~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~----~~~~vvV~EtGWPS~G~-~~as~~na~~y 289 (347)
.. +| ..++.. +..|+ ++-...+++. ||-.+. ..-+-.+++.+
T Consensus 111 ~~------~~------------------~~~~~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~~Dftnp~a~~w 157 (441)
T PF01055_consen 111 SP------DY------------------ENYDEA--------KEKGYLVKNPDGSPYIGRV-WPGKGGFIDFTNPEARDW 157 (441)
T ss_dssp TT------B-------------------HHHHHH--------HHTT-BEBCTTSSB-EEEE-TTEEEEEB-TTSHHHHHH
T ss_pred CC------cc------------------hhhhhH--------hhcCceeecccCCcccccc-cCCcccccCCCChhHHHH
Confidence 11 11 222221 12232 2235667777 885433 24555668888
Q ss_pred HHHHHHhccCCCCCCCCCcceEEEEEeec
Q 019014 290 NSNLIQHVKGGTPRKPGSAIETYVFAMFD 318 (347)
Q Consensus 290 ~~~lv~~~~~gTp~rp~~~~~~y~F~~FD 318 (347)
+++.++.+.. ..+++.++..+=+
T Consensus 158 ~~~~~~~~~~------~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 158 WKEQLKELLD------DYGVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHT------TST-SEEEEESTT
T ss_pred HHHHHHHHHh------ccCCceEEeecCC
Confidence 8777766631 1268898887633
No 57
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=37.35 E-value=66 Score=26.84 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCeEEEe--c--------CC---cchHHHHhcCCCeEEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--A--------PN---QATLQALRGSNIELLL 82 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~--------~d---~~vl~A~~~~gi~v~l 82 (347)
+++.+..+.+|++.|+++ + +- ..+|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 556667778899988877 4 33 3789999999999863
No 58
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.22 E-value=1.3e+02 Score=27.12 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCc---------chHHHHhcCCCeEEE--ecCCCchhhHHHhHHHHHHHHHhhccccCCC
Q 019014 45 EQEVVSLYKQTNIQRMRLYAPNQ---------ATLQALRGSNIELLL--GVPNSDLQNVAASQANANSWVQNNVGDYANG 113 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly~~d~---------~vl~A~~~~gi~v~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 113 (347)
...+++.|.++|.++|=+.+... ...++++..|+++.. ..+.....+.....+.+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 34556666667777776654331 234456677887621 111111122223345666776653 1
Q ss_pred ceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCC--CCceeEeeeeecc
Q 019014 114 VKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGL--GNQIKVSTAIDTR 168 (347)
Q Consensus 114 ~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl--~~~i~VsT~~~~~ 168 (347)
.+++|.+.|+.+. ... .++|++.|+ ++++.|.+-+...
T Consensus 171 -~~~ai~~~~d~~a------------~g~----~~~l~~~g~~vp~di~vigfd~~~ 210 (265)
T cd01543 171 -KPVGIFACTDARA------------RQL----LEACRRAGIAVPEEVAVLGVDNDE 210 (265)
T ss_pred -CCcEEEecChHHH------------HHH----HHHHHHhCCCCCCceEEEeeCCch
Confidence 2456766654432 122 234455565 3567777666443
No 59
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.06 E-value=41 Score=33.36 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCeEEEecCC-cchHHHHhcCCCeEE
Q 019014 48 VVSLYKQTNIQRMRLYAPN-QATLQALRGSNIELL 81 (347)
Q Consensus 48 v~~ll~~~~~~~VRly~~d-~~vl~A~~~~gi~v~ 81 (347)
-.++|+..|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3679999999999999999 877888999999986
No 60
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.24 E-value=2.2e+02 Score=27.35 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCccccccCCCCcc
Q 019014 141 PAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISYIGNTRDI 220 (347)
Q Consensus 141 ~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~p~~i 220 (347)
.+..+++.+.++.|+- .+++..... .+.|+ .+.+.|+.++..+.+-|+.++.=+.... .
T Consensus 113 ~a~~E~er~v~~~gf~-g~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~------~ 171 (293)
T COG2159 113 AAAEELERRVRELGFV-GVKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGG------A 171 (293)
T ss_pred HHHHHHHHHHHhcCce-EEEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCC------c
Confidence 3566777777777774 355543321 11121 2457889999999999999955443332 1
Q ss_pred ccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCCCCCcEEEeecc--cCCCCC
Q 019014 221 RLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGGGSLRIVVSESG--WPTAGG 278 (347)
Q Consensus 221 ~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtG--WPS~G~ 278 (347)
.+....+ +. - .+|-+ +.+ +|+++||+++.| +|..-.
T Consensus 172 ~~~~~~~--------~p-----~----~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 GLEKGHS--------DP-----L----YLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ccccCCC--------Cc-----h----HHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 1110000 00 1 12222 223 799999999999 887654
No 61
>PRK08815 GTP cyclohydrolase; Provisional
Probab=36.19 E-value=42 Score=33.75 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=31.9
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
.++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999998878899999999974344
No 62
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.11 E-value=42 Score=33.86 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=32.4
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
.++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999888899999999984444
No 63
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=35.13 E-value=1.3e+02 Score=28.80 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=42.0
Q ss_pred HHHHhc--CCCeEEEecCC--C--chhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHH
Q 019014 70 LQALRG--SNIELLLGVPN--S--DLQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAM 143 (347)
Q Consensus 70 l~A~~~--~gi~v~lGv~~--~--~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m 143 (347)
+.++++ .++||++.|-. . ....+..+.+...++++ +|..+...-.+.+|-+==|....... ....++..|
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~~---d~~~~~~ll 132 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARGD---DRENYTALL 132 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCcc---HHHHHHHHH
Confidence 445555 48999987764 2 22334343332222222 22221111245666665444332111 345788999
Q ss_pred HHHHHHHHHc
Q 019014 144 QNIRNAILAA 153 (347)
Q Consensus 144 ~~v~~aL~~~ 153 (347)
+++|+.|.+.
T Consensus 133 ~~lr~~l~~~ 142 (334)
T smart00636 133 KELREALDKE 142 (334)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 64
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=34.90 E-value=1.4e+02 Score=29.10 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=38.7
Q ss_pred CCCeEEEecC--CCc---hhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHH
Q 019014 76 SNIELLLGVP--NSD---LQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAI 150 (347)
Q Consensus 76 ~gi~v~lGv~--~~~---~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL 150 (347)
.++||++.|- ... ...++.+.+...+++++-+ .+...-.+.+|-+==|..............++..|+++|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5799987763 321 2334444333333333222 111112344555443432210000013567899999999999
Q ss_pred HHcC
Q 019014 151 LAAG 154 (347)
Q Consensus 151 ~~~g 154 (347)
++.+
T Consensus 148 ~~~~ 151 (362)
T cd02872 148 EPEA 151 (362)
T ss_pred HhhC
Confidence 9883
No 65
>PHA01735 hypothetical protein
Probab=34.20 E-value=29 Score=26.39 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=22.2
Q ss_pred hHHHhHHHHHHHHHhhccccCCCceEEEEEecceecc
Q 019014 91 NVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSP 127 (347)
Q Consensus 91 ~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~ 127 (347)
...++.++|.+|+++| .|+++.+-|-.+.
T Consensus 30 ATtaDL~AA~d~Lk~N--------dItgv~~~gspl~ 58 (76)
T PHA01735 30 ATTADLRAACDWLKSN--------DITGVAVDGSPLA 58 (76)
T ss_pred ccHHHHHHHHHHHHHC--------CCceeeCCCCHHH
Confidence 3457889999999975 6888888766553
No 66
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.37 E-value=48 Score=34.19 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=31.9
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
.++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6799999999999999999888899999999973333
No 67
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.27 E-value=49 Score=33.58 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEE
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLL 82 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~l 82 (347)
.++|+..|+++||+.+.++.=+.++.+.||+|.=
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~ 372 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTE 372 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEE
Confidence 6799999999999999999888899999999973
No 68
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=33.15 E-value=5.2e+02 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCC
Q 019014 135 YVSFLLPAMQNIRNAILAAGL 155 (347)
Q Consensus 135 ~~~~l~~~m~~v~~aL~~~gl 155 (347)
..+.++..|+++|++|...++
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCc
Confidence 356788899999999988765
No 69
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=33.14 E-value=78 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCeEEEe--cCC---cchHHHHhcCCCeEEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--APN---QATLQALRGSNIELLL 82 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d---~~vl~A~~~~gi~v~l 82 (347)
+.+.+.++..|++.|+++ +.. ..++++++.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 344567778899998888 433 3789999999998764
No 70
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=33.03 E-value=94 Score=26.21 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHhcCCCCeEEEecCC-----cchHHHHhcCCCeEEEecCC
Q 019014 40 TGLPSEQEVVSLYKQTNIQRMRLYAPN-----QATLQALRGSNIELLLGVPN 86 (347)
Q Consensus 40 ~~~ps~~~v~~ll~~~~~~~VRly~~d-----~~vl~A~~~~gi~v~lGv~~ 86 (347)
+-..+++++++..++.|++.|=+=|-+ +...+.+++.||++++|+-.
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 334589999999999999998887665 24556667799999999986
No 71
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=32.99 E-value=49 Score=34.92 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=32.6
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
+++|+..|+++||+...+|.=+.++++.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999889999999999984444
No 72
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.86 E-value=5.1e+02 Score=25.86 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCccccc
Q 019014 135 YVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYISY 213 (347)
Q Consensus 135 ~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~ 213 (347)
+.++...+++.+|+.. . .+.+++..-. .+| . +-.+.+...++|+.+.. +-.+++|||--+
T Consensus 271 ~~~~~~~~v~~l~~~~--~----gi~i~~~~Iv-----G~P-g------ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--P----DYAFGTDIIV-----GFP-G------ESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CHHHHHHHHHHHHHhC--C----CCeeeeeEEE-----ECC-C------CCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 5677788888887642 2 2556664322 133 1 11356778889887654 556788877654
No 73
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=31.68 E-value=90 Score=26.74 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCeEEEe--c--------CC---cchHHHHhcCCCeEEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--A--------PN---QATLQALRGSNIELLL 82 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~--------~d---~~vl~A~~~~gi~v~l 82 (347)
+++.+.++..|++.|+++ + +. ..+|++++..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 456667778999998887 4 33 3799999999999763
No 74
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=31.60 E-value=2.9e+02 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHhcCC-CCeEEEec---------CCcchHHHHhcCCCeEEEecCCC
Q 019014 49 VSLYKQTN-IQRMRLYA---------PNQATLQALRGSNIELLLGVPNS 87 (347)
Q Consensus 49 ~~ll~~~~-~~~VRly~---------~d~~vl~A~~~~gi~v~lGv~~~ 87 (347)
++.+++.+ ++.||+.. .+.+.++.++++|..+.+++--.
T Consensus 159 l~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 159 MARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCC
Confidence 33444433 55667753 12356777777777777766543
No 75
>CHL00041 rps11 ribosomal protein S11
Probab=31.12 E-value=99 Score=25.69 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCeEEEe--cCC---cchHHHHhcCCCeEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--APN---QATLQALRGSNIELL 81 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d---~~vl~A~~~~gi~v~ 81 (347)
+++.+.+++.|++.|+++ +.- ..++++++..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 344566677899998887 333 478999999999875
No 76
>PLN00196 alpha-amylase; Provisional
Probab=30.46 E-value=1.8e+02 Score=29.62 Aligned_cols=30 Identities=7% Similarity=-0.059 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHH-HcCCCCceeEeeeeec
Q 019014 137 SFLLPAMQNIRNAIL-AAGLGNQIKVSTAIDT 167 (347)
Q Consensus 137 ~~l~~~m~~v~~aL~-~~gl~~~i~VsT~~~~ 167 (347)
+.+..+|.+...-++ ..|++| .++-++..+
T Consensus 178 p~V~~~l~~~~~wl~~~~GiDG-~RlD~ak~~ 208 (428)
T PLN00196 178 KRVQRELIGWLLWLKSDIGFDA-WRLDFAKGY 208 (428)
T ss_pred HHHHHHHHHHHHHHhhCCCCCE-EEeehhhhC
Confidence 456667776666775 578875 777776543
No 77
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=28.95 E-value=3.8e+02 Score=27.16 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=49.1
Q ss_pred chHHHHhcCCCeEEEecCCCchhh----------------HHH-hHHHHHHH---HHhhccccCCCceEEEEEecceecc
Q 019014 68 ATLQALRGSNIELLLGVPNSDLQN----------------VAA-SQANANSW---VQNNVGDYANGVKFRYIAVGNEVSP 127 (347)
Q Consensus 68 ~vl~A~~~~gi~v~lGv~~~~~~~----------------~a~-~~~~a~~w---v~~~v~~~~~~~~I~~I~VGNEvl~ 127 (347)
-+|+++++.|+..+++.-|+..-- +.. ..++-... |.++...+ +..|++|.-=||+-.
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~--GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW--GINFDYISPFNEPQW 185 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT--T--EEEEE--S-TTS
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc--CCccceeCCcCCCCC
Confidence 588999999999999888772210 100 01111111 22222222 578999999999986
Q ss_pred CC---CCc--cccHHHHHHHHHHHHHHHHHcCCCCceeEeeeee
Q 019014 128 LN---GET--TQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAID 166 (347)
Q Consensus 128 ~~---~~~--~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~ 166 (347)
.- .+. -...++....|+.++.+|++.||.. +|+..++
T Consensus 186 ~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea 227 (384)
T PF14587_consen 186 NWAGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEA 227 (384)
T ss_dssp -GG--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEE
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecch
Confidence 41 111 1257788999999999999999964 4565555
No 78
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.89 E-value=4.6e+02 Score=24.12 Aligned_cols=107 Identities=7% Similarity=-0.001 Sum_probs=56.3
Q ss_pred CHHHHHHHHhcCCCCeEEEecCC---------------cchHHHHhcCCCeEEE-ecCC--------CchhhHHHhHHHH
Q 019014 44 SEQEVVSLYKQTNIQRMRLYAPN---------------QATLQALRGSNIELLL-GVPN--------SDLQNVAASQANA 99 (347)
Q Consensus 44 s~~~v~~ll~~~~~~~VRly~~d---------------~~vl~A~~~~gi~v~l-Gv~~--------~~~~~~a~~~~~a 99 (347)
+.++.++.+++.|++.|-+.-.+ ..+.++++++||+|.. +... .+........+..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 67899999999999999885211 1355667789999863 2211 1111112223333
Q ss_pred HHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCC
Q 019014 100 NSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGL 155 (347)
Q Consensus 100 ~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl 155 (347)
++++...- ...... |.++.-............+.++..|+.+-...++.|+
T Consensus 97 ~~~i~~a~--~lG~~~---v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQ--DLGIRT---IQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHH--HhCCCE---EEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44443321 122222 3332111111111001456788888888887777776
No 79
>PRK05309 30S ribosomal protein S11; Validated
Probab=28.37 E-value=1.2e+02 Score=25.77 Aligned_cols=36 Identities=14% Similarity=0.474 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCeEEEe--cCC---cchHHHHhcCCCeEE
Q 019014 46 QEVVSLYKQTNIQRMRLY--APN---QATLQALRGSNIELL 81 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d---~~vl~A~~~~gi~v~ 81 (347)
+++.+.++..|++.|+++ +.. ..+|++++..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445566778899999998 333 478999999999875
No 80
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.16 E-value=1.5e+02 Score=27.32 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=53.0
Q ss_pred cCCceeEEecCCCCCCCCHHHHHHHHhcCCCCeEEEecCC-----cchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHH
Q 019014 27 IDAQTGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAPN-----QATLQALRGSNIELLLGVPNSDLQNVAASQANANS 101 (347)
Q Consensus 27 ~~~~~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~d-----~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~ 101 (347)
.-..+||.|-...-.++. .--..+|||+- .++..+....-+.+++..-.....++ .....
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~ 105 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRN 105 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHH
Confidence 456789988776555554 12467788876 36777777666777777665555555 34444
Q ss_pred HHHhhccccCCCceEEEEEeccee
Q 019014 102 WVQNNVGDYANGVKFRYIAVGNEV 125 (347)
Q Consensus 102 wv~~~v~~~~~~~~I~~I~VGNEv 125 (347)
|++ +|..+.+ ..+..|.|||-.
T Consensus 106 W~~-~I~e~a~-~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 106 WIK-NIDEHAS-DDVVKILVGNKC 127 (207)
T ss_pred HHH-HHHhhCC-CCCcEEEeeccc
Confidence 554 4555544 377789999975
No 81
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.97 E-value=72 Score=31.42 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=49.7
Q ss_pred chHHHHhcCC-CeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHH
Q 019014 68 ATLQALRGSN-IELLLGVPNSDLQNVAASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNI 146 (347)
Q Consensus 68 ~vl~A~~~~g-i~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v 146 (347)
.||+++-.+| +++ +|=.-.+ .-+++.|+.|....+..++ ..|.+|+--|.-...+ +
T Consensus 176 ~VLkp~idsGkik~-~Ge~~~d----~W~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG----------------a 232 (341)
T COG4213 176 KVLKPLIDSGKIKV-VGEQWTD----GWLPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG----------------A 232 (341)
T ss_pred HHHHHHhhCCceEE-eeecccc----ccCHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH----------------H
Confidence 6899888887 555 6633211 2456778888888777764 4588887766532221 1
Q ss_pred HHHHHHcCCCCceeEeeee
Q 019014 147 RNAILAAGLGNQIKVSTAI 165 (347)
Q Consensus 147 ~~aL~~~gl~~~i~VsT~~ 165 (347)
-++|++.||++++|||=-|
T Consensus 233 I~aL~a~Gl~g~vpVsGQD 251 (341)
T COG4213 233 IAALKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHHHHhcccCCCCcccCcc
Confidence 2578889999889987544
No 82
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=27.56 E-value=2.9e+02 Score=27.84 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCeEEEecC----------Cc------------chHHHHhcCCCeEEEecCCCc------h-----hhH
Q 019014 46 QEVVSLYKQTNIQRMRLYAP----------NQ------------ATLQALRGSNIELLLGVPNSD------L-----QNV 92 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly~~----------d~------------~vl~A~~~~gi~v~lGv~~~~------~-----~~~ 92 (347)
++....+|+.|++.|||.-+ ++ ++++.+.+.||.|++-+-... . ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 66778899999999999733 32 356777889999998643221 0 001
Q ss_pred HH---h-HHHHHHHHHhhccccCCCceEEEEEecceecc--CCCCccccHHHH-HHHHHHHHHHHHHcC
Q 019014 93 AA---S-QANANSWVQNNVGDYANGVKFRYIAVGNEVSP--LNGETTQYVSFL-LPAMQNIRNAILAAG 154 (347)
Q Consensus 93 a~---~-~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~--~~~~~~~~~~~l-~~~m~~v~~aL~~~g 154 (347)
.. + ......| +.-...|-....|.++-+=||+.. ..+ ....- -++...|++.+...-
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~----~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSE----TWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCcc----ccccchHHHHHHHHhhhhhcC
Confidence 11 0 1122222 111223433467777888899984 111 23333 378888876665443
No 83
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.79 E-value=2.8e+02 Score=23.03 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHhcCCCCeEEEecCC----------cchHHHHhcCCCeEEEecCCC
Q 019014 40 TGLPSEQEVVSLYKQTNIQRMRLYAPN----------QATLQALRGSNIELLLGVPNS 87 (347)
Q Consensus 40 ~~~ps~~~v~~ll~~~~~~~VRly~~d----------~~vl~A~~~~gi~v~lGv~~~ 87 (347)
-..|++.+.++-|...|+++|.+-... +..+..++...+++.+|-|.-
T Consensus 53 ~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl 110 (127)
T cd03412 53 IEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLL 110 (127)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCC
Confidence 457999999998888899999887554 245555565677888887754
No 84
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=26.69 E-value=58 Score=31.66 Aligned_cols=221 Identities=17% Similarity=0.154 Sum_probs=110.8
Q ss_pred chHHHHhcCCCeEE--EecCCCchhh-HHH-----------hHHHHHHHHHhhccccCCC-ceEEEEEecceeccCCCC-
Q 019014 68 ATLQALRGSNIELL--LGVPNSDLQN-VAA-----------SQANANSWVQNNVGDYANG-VKFRYIAVGNEVSPLNGE- 131 (347)
Q Consensus 68 ~vl~A~~~~gi~v~--lGv~~~~~~~-~a~-----------~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNEvl~~~~~- 131 (347)
.+++-+++.||+|- .=||-...+. +.. -.+...++|.+-+..| .+ .+|...=|=||++..+..
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 46677778888875 3445443221 111 1344556777766665 43 488888888999986430
Q ss_pred ---cccc------HHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCc
Q 019014 132 ---TTQY------VSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAP 202 (347)
Q Consensus 132 ---~~~~------~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~ 202 (347)
.... ++.+..+.+-.|++..+ ++.---+ ++++. + .-...+..+++.|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCCc
Confidence 0001 23455566777776542 2222211 22221 1 1123466777777766544
Q ss_pred eeeecCccccccCCCCccccccccccCCceeccCCCcchhhHHHHHHHHHHHHHHHhCCCCCcEEEeecccCCCCCC--C
Q 019014 203 LLVNLYPYISYIGNTRDIRLDFALFTSDVVRVQDGQFGYRNLFDAILDAVYAALEKAGGGSLRIVVSESGWPTAGGT--A 280 (347)
Q Consensus 203 ~~vNiyPff~~~~~p~~i~l~~Alf~~~~~~~~d~~~~y~n~fda~vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~--~ 280 (347)
+ +. |- || ++.... +. .+.+..+|+++.--+++|.|||.-=.....+ .
T Consensus 204 I--------dg------IG-----~Q--~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~ 252 (320)
T PF00331_consen 204 I--------DG------IG-----LQ--SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPPDA 252 (320)
T ss_dssp S---------E------EE-----EE--EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCH
T ss_pred c--------ce------ec-----hh--hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcch
Confidence 2 10 10 11 111000 00 2334444555555579999999865554432 2
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCCC-CCcceEEEEEeecCC-CCCCCCCCCceeeecCCCCceee
Q 019014 281 ASVDNARTYNSNLIQHVKGGTPRKP-GSAIETYVFAMFDEN-QKQGSEYEKHWGLFLPNKQPKYS 343 (347)
Q Consensus 281 as~~na~~y~~~lv~~~~~gTp~rp-~~~~~~y~F~~FDe~-wK~g~~~E~~wGlf~~d~~~ky~ 343 (347)
...+.|+.+++.+++.+.+ .| ..-..+.+-...|.. |.+... -.+=+||+.|.+||..
T Consensus 253 ~~~~~qA~~~~~~~~~~~~----~~~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 253 EEEEAQAEYYRDFLTACFS----HPPAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHH----TTHCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred HHHHHHHHHHHHHHHHHHh----CCccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 4467778888888877732 22 112334444555533 554211 2334799999999864
No 85
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.63 E-value=1e+02 Score=28.15 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=34.9
Q ss_pred HHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecCCCc
Q 019014 49 VSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVPNSD 88 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~~~~ 88 (347)
+++|+-.|+++||+-+.+|.=..++.+.||+|.=-+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 4688999999999999998888999999999988877653
No 86
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=26.59 E-value=5.7e+02 Score=24.43 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred hHHHHhc--CCCeEE--E--ecCCCc-hhhHHHhHHHHHHHHHhhccccCCCceEEEEEecc-eeccC-CCCccccHHHH
Q 019014 69 TLQALRG--SNIELL--L--GVPNSD-LQNVAASQANANSWVQNNVGDYANGVKFRYIAVGN-EVSPL-NGETTQYVSFL 139 (347)
Q Consensus 69 vl~A~~~--~gi~v~--l--Gv~~~~-~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-Evl~~-~~~~~~~~~~l 139 (347)
.+.++++ .++||+ + |=|... ...++++.+.-.+++++ +..+...-.+.+|-+=- |-... +.. .....+
T Consensus 56 ~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~--~d~~~~ 132 (318)
T cd02876 56 WIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVP--DKRKEL 132 (318)
T ss_pred HHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCH--HHHHHH
Confidence 3455554 579998 4 445432 34455555544444443 32222222445554421 11111 001 134678
Q ss_pred HHHHHHHHHHHHHcCC
Q 019014 140 LPAMQNIRNAILAAGL 155 (347)
Q Consensus 140 ~~~m~~v~~aL~~~gl 155 (347)
+..|+++|++|++.|+
T Consensus 133 ~~~l~el~~~l~~~~~ 148 (318)
T cd02876 133 IQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8999999999998776
No 87
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=26.33 E-value=1.3e+02 Score=30.61 Aligned_cols=83 Identities=14% Similarity=0.242 Sum_probs=53.3
Q ss_pred cchHHHHhcCCCeEEEecCCCc--hhhH--------HHhHHHHHHHHHhhccccCCCceEEEEEecceeccCCCCccccH
Q 019014 67 QATLQALRGSNIELLLGVPNSD--LQNV--------AASQANANSWVQNNVGDYANGVKFRYIAVGNEVSPLNGETTQYV 136 (347)
Q Consensus 67 ~~vl~A~~~~gi~v~lGv~~~~--~~~~--------a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNEvl~~~~~~~~~~ 136 (347)
..+++..+..+++.++++-|.. ...+ -.++.+-.+-+ +++..-....-++++.+.=|.+...| -
T Consensus 150 ~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i-~~ii~~l~~~Gyrgv~iDfE~v~~~D-----R 223 (423)
T COG3858 150 ENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLI-NNIITLLDARGYRGVNIDFENVGPGD-----R 223 (423)
T ss_pred cchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHH-HHHHHHHHhcCcccEEechhhCCHHH-----H
Confidence 4788999999999999999876 2221 11221111111 12211112245778888888886543 4
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 019014 137 SFLLPAMQNIRNAILAAGL 155 (347)
Q Consensus 137 ~~l~~~m~~v~~aL~~~gl 155 (347)
+..=-.|+++|.+|.+.|+
T Consensus 224 ~~yt~flR~~r~~l~~~G~ 242 (423)
T COG3858 224 ELYTDFLRQVRDALHSGGY 242 (423)
T ss_pred HHHHHHHHHHHHHhccCCe
Confidence 5666789999999999887
No 88
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.77 E-value=1.3e+02 Score=27.51 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=37.6
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCeEEEecCC----cchHHHHhcCCCeEE
Q 019014 31 TGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAPN----QATLQALRGSNIELL 81 (347)
Q Consensus 31 ~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~d----~~vl~A~~~~gi~v~ 81 (347)
++||++..-..+ +.++.++.+++.|++.|-++... ..+.+.++++|++|.
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEE
Confidence 467777554444 67889999999999999997422 256677789999986
No 89
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.16 E-value=2.6e+02 Score=26.66 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=36.7
Q ss_pred eEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCce-eEeeeeecccccccCCCCCcccCcccchhhhHHH
Q 019014 115 KFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQI-KVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVI 193 (347)
Q Consensus 115 ~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i-~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l 193 (347)
...-|+||+|.|...-.++ ..+ -+-+.|...|+ ++ .++|. .+ + ...+...+
T Consensus 3 ~a~iI~vG~ElL~G~ivdt-Na~-------~la~~L~~~G~--~v~~~~~V------gD-----------~-~~~I~~~l 54 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDT-NAA-------FLADELTELGV--DLARITTV------GD-----------N-PDRIVEAL 54 (255)
T ss_pred eEEEEEEccceecCceecc-hHH-------HHHHHHHhcCc--eEEEEEec------CC-----------C-HHHHHHHH
Confidence 3567999999998643321 222 34456777888 34 33332 11 1 14566677
Q ss_pred HHHhhcCCceee
Q 019014 194 RFLVDNQAPLLV 205 (347)
Q Consensus 194 ~fL~~~~d~~~v 205 (347)
..+.+..|++.+
T Consensus 55 ~~a~~r~D~vI~ 66 (255)
T COG1058 55 REASERADVVIT 66 (255)
T ss_pred HHHHhCCCEEEE
Confidence 777666666643
No 90
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=25.01 E-value=5.6e+02 Score=24.87 Aligned_cols=135 Identities=14% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCeEEEecCC------------cchHHHHhc--CCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCC
Q 019014 48 VVSLYKQTNIQRMRLYAPN------------QATLQALRG--SNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYANG 113 (347)
Q Consensus 48 v~~ll~~~~~~~VRly~~d------------~~vl~A~~~--~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 113 (347)
+++.++..|++.|-|-+.| .++++++++ .++.|-+..+.. .. ..+....+.+....-+ .
T Consensus 99 ~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~--~g---~~e~l~~l~~aG~dv~--~ 171 (302)
T TIGR00510 99 LAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDF--RG---NIAALDILLDAPPDVY--N 171 (302)
T ss_pred HHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcc--cC---CHHHHHHHHHcCchhh--c
Confidence 3456677899998777532 256777766 356655554421 11 1222233222222111 1
Q ss_pred ceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHH
Q 019014 114 VKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVI 193 (347)
Q Consensus 114 ~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l 193 (347)
.++. .+ +.++..-....+.++-+..++.+++.. +.++++|..-.+. ..+ .+.+...+
T Consensus 172 hnlE--t~--~~l~~~vrr~~t~e~~Le~l~~ak~~~------pgi~~~TgiIVGl-GET------------eee~~etl 228 (302)
T TIGR00510 172 HNLE--TV--ERLTPFVRPGATYRWSLKLLERAKEYL------PNLPTKSGIMVGL-GET------------NEEIKQTL 228 (302)
T ss_pred cccc--ch--HHHHHHhCCCCCHHHHHHHHHHHHHhC------CCCeecceEEEEC-CCC------------HHHHHHHH
Confidence 1222 11 233221000125677788888887753 2467777654443 332 24567778
Q ss_pred HHHhhcCCceeeecCccccc
Q 019014 194 RFLVDNQAPLLVNLYPYISY 213 (347)
Q Consensus 194 ~fL~~~~d~~~vNiyPff~~ 213 (347)
++|.+. .+-.+++-+|+.-
T Consensus 229 ~~Lrel-g~d~v~igqYl~p 247 (302)
T TIGR00510 229 KDLRDH-GVTMVTLGQYLRP 247 (302)
T ss_pred HHHHhc-CCCEEEeecccCC
Confidence 888665 5777888888875
No 91
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.91 E-value=5.4e+02 Score=23.57 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=35.5
Q ss_pred EEecCCCCCCCCHHHHHHHHhcCCCCeEEEecCC----cchHHHHhcCCCeEEE
Q 019014 33 VCYGRDGTGLPSEQEVVSLYKQTNIQRMRLYAPN----QATLQALRGSNIELLL 82 (347)
Q Consensus 33 i~Yg~~~~~~ps~~~v~~ll~~~~~~~VRly~~d----~~vl~A~~~~gi~v~l 82 (347)
+|.+..-..+ +.++.++.+++.||+.|-+.... ..+.+.++++||++..
T Consensus 6 ~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 6 ANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 4444433344 46888999999999999987643 2566778899999974
No 92
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.81 E-value=6.4e+02 Score=24.34 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhcCCCCeEEEecCCc-------chHHHHhcCCCeEEEe
Q 019014 42 LPSEQEVVSLYKQTNIQRMRLYAPNQ-------ATLQALRGSNIELLLG 83 (347)
Q Consensus 42 ~ps~~~v~~ll~~~~~~~VRly~~d~-------~vl~A~~~~gi~v~lG 83 (347)
-.+.+++.+.+...|+..|.+.+-+| ++++.+++.|+.+.+-
T Consensus 58 ~ls~ee~~~~i~e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~ 106 (318)
T TIGR03470 58 RLSVEECLRAVDECGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLC 106 (318)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEe
Confidence 35788888888878899999998774 5677777778776654
No 93
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=24.76 E-value=2.8e+02 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.8
Q ss_pred cCCceeEEecCCCCCCCCHHHHHHHHhcCCCCeEEE
Q 019014 27 IDAQTGVCYGRDGTGLPSEQEVVSLYKQTNIQRMRL 62 (347)
Q Consensus 27 ~~~~~Gi~Yg~~~~~~ps~~~v~~ll~~~~~~~VRl 62 (347)
....+-|+-+..+...|+.++|.+.|++.||..-++
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 455677877777778888889999999998866444
No 94
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.84 E-value=92 Score=32.31 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHhcCCCCeEEEecCCc------chHHHHhcCCCeEEEec
Q 019014 49 VSLYKQTNIQRMRLYAPNQ------ATLQALRGSNIELLLGV 84 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~------~vl~A~~~~gi~v~lGv 84 (347)
++..+.+|++.+|+|+.-. ..++++++.|..+.+.+
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i 152 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCI 152 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4455679999999998752 45677788998855433
No 95
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=23.78 E-value=1.1e+02 Score=30.37 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHhcCCCCeEEEecCCc------chHHHHhcCCCeEEEecCC
Q 019014 42 LPSEQEVVSLYKQTNIQRMRLYAPNQ------ATLQALRGSNIELLLGVPN 86 (347)
Q Consensus 42 ~ps~~~v~~ll~~~~~~~VRly~~d~------~vl~A~~~~gi~v~lGv~~ 86 (347)
.|+++++.++++... +.||+|...| .+++.+++.||+|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367777777777543 6788885553 5678888999999888554
No 96
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.54 E-value=2.4e+02 Score=28.23 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCceeEe
Q 019014 136 VSFLLPAMQNIRNAILAAGLGNQIKVS 162 (347)
Q Consensus 136 ~~~l~~~m~~v~~aL~~~gl~~~i~Vs 162 (347)
.+....-...+++.|+++|+. +..|+
T Consensus 226 ~~~~~~~~~~~~~~L~~~Gy~-~yeis 251 (400)
T PRK07379 226 DETTAAMYRLAQEILTQAGYE-HYEIS 251 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCc-eeeee
Confidence 445566677899999999995 34333
No 97
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=23.41 E-value=2.2e+02 Score=23.23 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCcEEEeecccCCCCCC-CCCHHHHHHHHHHHHHhccCCCCCCC
Q 019014 249 LDAVYAALEKAGGGSLRIVVSESGWPTAGGT-AASVDNARTYNSNLIQHVKGGTPRKP 305 (347)
Q Consensus 249 vDa~~~al~~~g~~~~~vvV~EtGWPS~G~~-~as~~na~~y~~~lv~~~~~gTp~rp 305 (347)
.|+++.-|...+ =|-.|.+ -+|.+.|-.-+++.+.....+||++.
T Consensus 39 KD~I~q~m~~F~------------dp~~G~pAF~s~~QQ~~mlq~~l~k~~~~t~L~E 84 (120)
T PRK15321 39 KDSIYQEMNAFK------------DPNSGDSAFVSFEQQTAMLQNMLAKVEPGTHLYE 84 (120)
T ss_pred HHHHHHHHHHhC------------CCCCCCcccccHHHHHHHHHHHHHhcCCCchHHH
Confidence 477776666533 3777776 78999999999999999888888764
No 98
>PRK07198 hypothetical protein; Validated
Probab=23.41 E-value=58 Score=33.01 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=32.1
Q ss_pred HHHHhcCCCCeE-EEecCCcchHHHHhcCCCeEEEecC
Q 019014 49 VSLYKQTNIQRM-RLYAPNQATLQALRGSNIELLLGVP 85 (347)
Q Consensus 49 ~~ll~~~~~~~V-Rly~~d~~vl~A~~~~gi~v~lGv~ 85 (347)
.++|+..|+++| |+.+..+.=+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578899999999 9999998888899999999984444
No 99
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.21 E-value=97 Score=27.31 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHhcCCCC-eEEEecCCc------chHHHHhcCCCeEEEecCC
Q 019014 40 TGLPSEQEVVSLYKQTNIQ-RMRLYAPNQ------ATLQALRGSNIELLLGVPN 86 (347)
Q Consensus 40 ~~~ps~~~v~~ll~~~~~~-~VRly~~d~------~vl~A~~~~gi~v~lGv~~ 86 (347)
+|+|..++..+.|+..|+. .+|+.++.. +.++.+++.|++|++.+--
T Consensus 9 SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4788889999999999985 588888872 3444445679999998773
No 100
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=22.63 E-value=90 Score=26.14 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=26.0
Q ss_pred CC-CcccCcccchhhhHHHHHHhh--cCCceeeecCccccc
Q 019014 176 PS-KGTFRPDVRRFLDPVIRFLVD--NQAPLLVNLYPYISY 213 (347)
Q Consensus 176 PS-~g~F~~~~~~~~~~~l~fL~~--~~d~~~vNiyPff~~ 213 (347)
|| +..+.+| +.++-++.|... -+.+.++|+||+.+-
T Consensus 22 PS~A~~~~~D--~T~~~~~~~a~~~gyg~~~i~NLf~~~~t 60 (136)
T PF07799_consen 22 PSTADAEKDD--PTIRRCINFARRWGYGGVIIVNLFPQRST 60 (136)
T ss_pred CCCCCCcCCC--HHHHHHHHHHhhcCCCeEEEEEecccccC
Confidence 44 5555554 677778887654 678899999999874
No 101
>PRK09004 FMN-binding protein MioC; Provisional
Probab=22.35 E-value=4.8e+02 Score=22.08 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=59.8
Q ss_pred ceeEEecCCCCCCC-CHHHHHHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhcc
Q 019014 30 QTGVCYGRDGTGLP-SEQEVVSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVG 108 (347)
Q Consensus 30 ~~Gi~Yg~~~~~~p-s~~~v~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~ 108 (347)
.+.|-|+...-|-- =++++.+.+++.|++ +++++.+. +..+.+.. .++++++..+.-....+-..-.+|++.. .
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~-~~~~~~~~--~~~l~~~~-~li~~~sT~G~Ge~p~~~~~f~~~L~~~-~ 77 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFS-TETLHGPL--LDDLSASG-LWLIVTSTHGAGDLPDNLQPFFEELQEQ-K 77 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCc-eEEeccCC--HHHhccCC-eEEEEECCCCCCCCChhHHHHHHHHHhc-C
Confidence 36788887543321 234445566666664 45665442 34454443 4666666543333333444555667653 2
Q ss_pred ccCCCceEEEEEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCC
Q 019014 109 DYANGVKFRYIAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLG 156 (347)
Q Consensus 109 ~~~~~~~I~~I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~ 156 (347)
+..++.++.-+-.||-. . +.-=.+++++.+.|.+.|-.
T Consensus 78 ~~l~g~~~aVfGlGds~---------Y-~~fc~~~~~ld~~l~~lGa~ 115 (146)
T PRK09004 78 PDLSQVRFAAIGIGSSE---------Y-DTFCGAIDKLEQLLKAKGAK 115 (146)
T ss_pred CCCCCCEEEEEeecCCC---------H-HHHhHHHHHHHHHHHHcCCe
Confidence 22333344444444432 1 34456788999999988863
No 102
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.80 E-value=6e+02 Score=22.99 Aligned_cols=93 Identities=12% Similarity=0.234 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCCeEEEe-cC-C--cchHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCC-ceEEEE
Q 019014 45 EQEVVSLYKQTNIQRMRLY-AP-N--QATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYANG-VKFRYI 119 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly-~~-d--~~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~-~~I~~I 119 (347)
|++.++.++..|.+.|=+- .+ + ..+++.+++.|+++-+.++... .+ +. +.+|.+. +.|.-.
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~----~~--------~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV----EE--------LEPYLDQVDMVLVM 134 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G----GG--------GTTTGCCSSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc----hH--------HHHHhhhcCEEEEE
Confidence 5667777776666655332 21 2 2688889999999988877542 11 11 2233322 344434
Q ss_pred EecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCC
Q 019014 120 AVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLG 156 (347)
Q Consensus 120 ~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~ 156 (347)
+| |+=..+.. ..+..+..|+.+|+.+.+.|++
T Consensus 135 sV--~PG~~Gq~---f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 135 SV--EPGFGGQK---FIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp SS---TTTSSB-----HGGHHHHHHHHHHHHHHHTCG
T ss_pred Ee--cCCCCccc---ccHHHHHHHHHHHHHHHhcCCc
Confidence 43 33222333 6778999999999999998874
No 103
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=21.73 E-value=2.8e+02 Score=26.31 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=58.0
Q ss_pred hcCCCeEEEecCCC--c---hhhHHHhHHHHHHH---HHhhccccCCCceEEEEEecceeccCC--CCccccHHHHHHHH
Q 019014 74 RGSNIELLLGVPNS--D---LQNVAASQANANSW---VQNNVGDYANGVKFRYIAVGNEVSPLN--GETTQYVSFLLPAM 143 (347)
Q Consensus 74 ~~~gi~v~lGv~~~--~---~~~~a~~~~~a~~w---v~~~v~~~~~~~~I~~I~VGNEvl~~~--~~~~~~~~~l~~~m 143 (347)
+..|+||++.|... . ...+..+.+..... +.+-+..| .+.+|-+==|-.... .. ........|
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y----~~DGidiD~e~~~~~~~~~---~~~~~~~~l 142 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKY----GFDGIDIDWEYPSSSGDPQ---DKDNYTAFL 142 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHH----T-SEEEEEESSTTSTSSTT---HHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhccc----Ccceeeeeeeeccccccch---hhhhhhhhh
Confidence 45699998766544 1 22233232222221 22222233 466666644444322 11 567889999
Q ss_pred HHHHHHHHHc-----CCCCceeEeeeeecccccccCCCCCcccCcccchhhhHHHHHHhhcCCceeeecCcccc
Q 019014 144 QNIRNAILAA-----GLGNQIKVSTAIDTRVLGDASPPSKGTFRPDVRRFLDPVIRFLVDNQAPLLVNLYPYIS 212 (347)
Q Consensus 144 ~~v~~aL~~~-----gl~~~i~VsT~~~~~~~~~s~PPS~g~F~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 212 (347)
+.+|.+|++. ++ .+|.+...... ....+ .+..|.+..|++.+-.|-|..
T Consensus 143 ~~L~~~l~~~~~~~~~~----~ls~a~p~~~~--------------~~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 143 KELRKALKRANRSGKGY----ILSVAVPPSPD--------------YYDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHHHHHSTS----EEEEEEECSHH--------------HHTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hhhhhhhccccccccee----EEeeccccccc--------------ccccc--ccccccccccccccccccCCC
Confidence 9999999986 44 34443211110 00111 234477788999888887765
No 104
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.67 E-value=2.1e+02 Score=21.62 Aligned_cols=40 Identities=10% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCcchHHHHhcCCCeEEEec
Q 019014 45 EQEVVSLYKQTNIQRMRLYAPNQATLQALRGSNIELLLGV 84 (347)
Q Consensus 45 ~~~v~~ll~~~~~~~VRly~~d~~vl~A~~~~gi~v~lGv 84 (347)
....+++|...+++.|=.-..-+...+.++..||+|+.+.
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEEST
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcC
Confidence 4567888887889998887888899999999999999993
No 105
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=21.48 E-value=90 Score=31.87 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHHHH----HHhcCCCCeEEEecCC------cchHHHHhcCCCeEEEecC
Q 019014 46 QEVVS----LYKQTNIQRMRLYAPN------QATLQALRGSNIELLLGVP 85 (347)
Q Consensus 46 ~~v~~----ll~~~~~~~VRly~~d------~~vl~A~~~~gi~v~lGv~ 85 (347)
++||+ .-..+|++.+|+||+- ...+++++++|-.+...+-
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 55655 3346899999999985 2568888999876654443
No 106
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=21.41 E-value=1.1e+02 Score=32.88 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHH----HHhcCCCCeEEEecCCc------chHHHHhcCCCeEEEec
Q 019014 45 EQEVVS----LYKQTNIQRMRLYAPNQ------ATLQALRGSNIELLLGV 84 (347)
Q Consensus 45 ~~~v~~----ll~~~~~~~VRly~~d~------~vl~A~~~~gi~v~lGv 84 (347)
+++|++ ..+.+|++.+|+||+-- ..++++++.|..+...+
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i 143 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAI 143 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEE
Confidence 566654 44678999999998762 35677788998776653
No 107
>PF14903 WG_beta_rep: WG containing repeat
Probab=21.19 E-value=66 Score=19.82 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=12.7
Q ss_pred eeeecCCCCceeeccc
Q 019014 331 WGLFLPNKQPKYSINF 346 (347)
Q Consensus 331 wGlf~~d~~~ky~l~~ 346 (347)
||+++.+|+.+.+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999988776543
No 108
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=20.84 E-value=2.2e+02 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=30.0
Q ss_pred HHHhcCCCCeEEEecCCc-chHHHHhcCCCeEEEecCCCchh
Q 019014 50 SLYKQTNIQRMRLYAPNQ-ATLQALRGSNIELLLGVPNSDLQ 90 (347)
Q Consensus 50 ~ll~~~~~~~VRly~~d~-~vl~A~~~~gi~v~lGv~~~~~~ 90 (347)
++|+..|++. .+-..|. -+.+++++-.+.++++.|....+
T Consensus 52 ~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~~ 92 (302)
T COG2113 52 KILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTTP 92 (302)
T ss_pred HHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCCh
Confidence 4778888765 6666664 55688888899999999986543
No 109
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.65 E-value=9.4e+02 Score=24.78 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCHHHHHH----HHhcCCCCeEEEecCCc--------chHHHHhcCC-CeEEEecCCCchhhHHHhHHHHHHHHHhhccc
Q 019014 43 PSEQEVVS----LYKQTNIQRMRLYAPNQ--------ATLQALRGSN-IELLLGVPNSDLQNVAASQANANSWVQNNVGD 109 (347)
Q Consensus 43 ps~~~v~~----ll~~~~~~~VRly~~d~--------~vl~A~~~~g-i~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~ 109 (347)
-|+++|++ +.+..|++.+-+.|-+. ++++++.+.| +++..+.... ...+..+.+.... +++
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~-l~~---- 295 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHL-YRR---- 295 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHH-HHH----
Confidence 46677765 33457888888876542 4667777666 6665444321 1111112222222 221
Q ss_pred cCCCceEEEEEecceeccCCC----CccccHHHHHHHHHHHHHH
Q 019014 110 YANGVKFRYIAVGNEVSPLNG----ETTQYVSFLLPAMQNIRNA 149 (347)
Q Consensus 110 ~~~~~~I~~I~VGNEvl~~~~----~~~~~~~~l~~~m~~v~~a 149 (347)
..++.|.+|=|...... ..+.+.++...+++.+|++
T Consensus 296 ----aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~ 335 (497)
T TIGR02026 296 ----AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQH 335 (497)
T ss_pred ----hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 24567888877664210 0012566677777666653
No 110
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.62 E-value=6.9e+02 Score=23.52 Aligned_cols=87 Identities=7% Similarity=0.095 Sum_probs=47.7
Q ss_pred HHHHhcCCCCeEEEecCCc------chHHHHhcCCCeEEEecCCCchhhHHHhHHHHHHHHHhhccccCCCceEEEEEec
Q 019014 49 VSLYKQTNIQRMRLYAPNQ------ATLQALRGSNIELLLGVPNSDLQNVAASQANANSWVQNNVGDYANGVKFRYIAVG 122 (347)
Q Consensus 49 ~~ll~~~~~~~VRly~~d~------~vl~A~~~~gi~v~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VG 122 (347)
++.....|++.||++.... ..++.+++.|++|.+++..... .+.+...++++.. ..+ +.+ .|.+.
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~~-~~~-g~~---~i~l~ 158 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLELV-NEI-KPD---VFYIV 158 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHHH-HhC-CCC---EEEEe
Confidence 3444567889999985542 4556667789999988775322 2333333333332 222 222 23322
Q ss_pred ceeccCCCCccccHHHHHHHHHHHHHHH
Q 019014 123 NEVSPLNGETTQYVSFLLPAMQNIRNAI 150 (347)
Q Consensus 123 NEvl~~~~~~~~~~~~l~~~m~~v~~aL 150 (347)
.- .+- ..+.++-..++.+++.+
T Consensus 159 DT---~G~---~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 159 DS---FGS---MYPEDIKRIISLLRSNL 180 (266)
T ss_pred cC---CCC---CCHHHHHHHHHHHHHhc
Confidence 11 012 26777777777777654
No 111
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=20.55 E-value=70 Score=32.18 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHh---cCCCCe---EEEe--cCC-cchHHHHhc-CCCeEEEecCCC
Q 019014 46 QEVVSLYK---QTNIQR---MRLY--APN-QATLQALRG-SNIELLLGVPNS 87 (347)
Q Consensus 46 ~~v~~ll~---~~~~~~---VRly--~~d-~~vl~A~~~-~gi~v~lGv~~~ 87 (347)
+++.+++. .+||++ .+-| +.. +-+-+|+++ ...||.|+.-..
T Consensus 34 ~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp 85 (391)
T COG1453 34 ENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLP 85 (391)
T ss_pred HHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecC
Confidence 44445543 467655 4556 333 356688875 677888875543
No 112
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=20.46 E-value=2.4e+02 Score=28.60 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCeEEEe--cCCc----------------chHHHHhcC-----CCeEEEecCCCchhhHHHhHHHHHHH
Q 019014 46 QEVVSLYKQTNIQRMRLY--APNQ----------------ATLQALRGS-----NIELLLGVPNSDLQNVAASQANANSW 102 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d~----------------~vl~A~~~~-----gi~v~lGv~~~~~~~~a~~~~~a~~w 102 (347)
.+-.+.|+..|+++|=+- +-+. .++..+++. +|.++-|+|....+++.++.+.|.+-
T Consensus 137 ~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l 216 (416)
T COG0635 137 AEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALEL 216 (416)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 345678888888877654 2232 223333433 46889999988777777666665432
Q ss_pred HHhhccccCCCceEEEEEecceeccCCCC---ccccHHHHHHHHHHHHHHHHHcCCC
Q 019014 103 VQNNVGDYANGVKFRYIAVGNEVSPLNGE---TTQYVSFLLPAMQNIRNAILAAGLG 156 (347)
Q Consensus 103 v~~~v~~~~~~~~I~~I~VGNEvl~~~~~---~~~~~~~l~~~m~~v~~aL~~~gl~ 156 (347)
=-++|..| ...++-+=.+.+... .....+..+.-.+.+++.|.++|+.
T Consensus 217 ~pdhis~y------~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~ 267 (416)
T COG0635 217 GPDHLSLY------SLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYR 267 (416)
T ss_pred CCCEEEEe------eeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCc
Confidence 12222221 122222222221100 0013456778889999999999993
No 113
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=20.25 E-value=4.7e+02 Score=26.57 Aligned_cols=107 Identities=13% Similarity=0.221 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCCeEEEe--cCCc----------------chHHHHhcCCC-----eEEEecCCCchhhHHHhHHHHHHH
Q 019014 46 QEVVSLYKQTNIQRMRLY--APNQ----------------ATLQALRGSNI-----ELLLGVPNSDLQNVAASQANANSW 102 (347)
Q Consensus 46 ~~v~~ll~~~~~~~VRly--~~d~----------------~vl~A~~~~gi-----~v~lGv~~~~~~~~a~~~~~a~~w 102 (347)
++.++.|++.|+++|-+= +.++ ..++.+++.|+ .++.|+|.+...++......+.+.
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 230 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAEL 230 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhc
Confidence 566788888888876541 2221 23444555555 578899988777766555554431
Q ss_pred HHhhccccCCCceEEE-EEecceeccCCCCccccHHHHHHHHHHHHHHHHHcCCC
Q 019014 103 VQNNVGDYANGVKFRY-IAVGNEVSPLNGETTQYVSFLLPAMQNIRNAILAAGLG 156 (347)
Q Consensus 103 v~~~v~~~~~~~~I~~-I~VGNEvl~~~~~~~~~~~~l~~~m~~v~~aL~~~gl~ 156 (347)
=-.+|.-| +=...-. .-.+.. +..... .+.++....++.+.+.|.++|+.
T Consensus 231 ~~~~is~y-~L~~~p~~~~~~~~-~~~~~~--~~~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 231 NPDRLAVF-NYAHVPWVKPAQRK-IPEAAL--PSAEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred CCCEEEEe-cCccccchhHHHhc-ccccCC--CCHHHHHHHHHHHHHHHHHCCCE
Confidence 11111111 0000000 000100 001111 14567778888899999999994
No 114
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.15 E-value=91 Score=25.61 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.7
Q ss_pred CHHHHHHHHhcCC---CCeEEEecCCcc
Q 019014 44 SEQEVVSLYKQTN---IQRMRLYAPNQA 68 (347)
Q Consensus 44 s~~~v~~ll~~~~---~~~VRly~~d~~ 68 (347)
.|+++..+|+... -+++||||+|..
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~ 29 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGN 29 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 4677777887652 489999999953
Done!