Query 019016
Match_columns 347
No_of_seqs 230 out of 1568
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0306 PitA Phosphate/sulphat 100.0 1.4E-41 3.1E-46 331.4 15.7 198 93-304 126-325 (326)
2 PF01384 PHO4: Phosphate trans 100.0 2.4E-38 5.1E-43 308.9 13.8 190 92-294 111-326 (326)
3 KOG2493 Na+/Pi symporter [Inor 100.0 3.5E-35 7.7E-40 294.8 3.4 158 137-304 340-508 (512)
4 KOG2493 Na+/Pi symporter [Inor 100.0 1.1E-32 2.5E-37 276.8 8.8 197 142-344 24-220 (512)
5 COG0306 PitA Phosphate/sulphat 100.0 3E-31 6.5E-36 259.1 18.0 178 145-329 4-181 (326)
6 PF01384 PHO4: Phosphate trans 100.0 5.4E-31 1.2E-35 257.2 14.1 161 160-326 1-163 (326)
7 TIGR00341 conserved hypothetic 80.4 53 0.0011 33.1 14.0 66 56-124 77-161 (325)
8 PRK10712 PTS system fructose-s 79.6 48 0.001 35.7 14.2 91 105-197 348-450 (563)
9 PRK10478 putative PTS system f 50.2 3E+02 0.0065 28.2 13.6 77 103-181 132-216 (359)
10 PRK10692 hypothetical protein; 39.8 93 0.002 25.9 5.6 56 181-239 4-59 (92)
11 PRK01844 hypothetical protein; 37.5 64 0.0014 25.8 4.3 42 106-148 6-47 (72)
12 COG1288 Predicted membrane pro 36.9 2.9E+02 0.0062 29.4 10.0 171 139-342 301-478 (481)
13 PRK11404 putative PTS system 36.5 4.7E+02 0.01 27.7 11.8 24 281-304 442-465 (482)
14 PF10762 DUF2583: Protein of u 34.3 1.3E+02 0.0029 24.9 5.7 56 181-239 4-59 (89)
15 PRK10929 putative mechanosensi 33.1 7.9E+02 0.017 29.0 13.7 26 237-263 888-913 (1109)
16 PLN02953 phosphatidate cytidyl 32.1 37 0.0008 35.2 2.7 15 247-261 299-313 (403)
17 COG3104 PTR2 Dipeptide/tripept 31.4 6.9E+02 0.015 26.9 14.4 91 175-265 86-203 (498)
18 PF03606 DcuC: C4-dicarboxylat 30.1 6.5E+02 0.014 26.2 12.6 137 183-344 324-465 (465)
19 PF09512 ThiW: Thiamine-precur 30.0 4.2E+02 0.0092 24.0 9.2 82 250-344 65-146 (150)
20 PRK11281 hypothetical protein; 25.2 4.9E+02 0.011 30.6 10.4 29 235-264 889-917 (1113)
21 PRK10263 DNA translocase FtsK; 24.8 9.9E+02 0.022 28.9 12.6 10 255-264 142-151 (1355)
22 PF03672 UPF0154: Uncharacteri 24.5 1.7E+02 0.0036 22.9 4.5 36 111-147 4-39 (64)
23 PRK00523 hypothetical protein; 24.3 1.5E+02 0.0032 23.8 4.3 41 107-148 8-48 (72)
24 TIGR00835 agcS amino acid carr 23.8 8.5E+02 0.018 25.4 11.9 68 146-213 129-198 (425)
25 TIGR00930 2a30 K-Cl cotranspor 23.7 1.1E+03 0.023 27.3 12.5 21 189-209 399-419 (953)
26 PF10066 DUF2304: Uncharacteri 23.4 4.4E+02 0.0096 22.0 9.6 71 137-213 27-98 (115)
27 PF06738 DUF1212: Protein of u 22.5 4.5E+02 0.0097 23.4 7.7 31 228-259 158-188 (193)
28 PF01235 Na_Ala_symp: Sodium:a 21.9 2.4E+02 0.0051 29.4 6.5 72 255-340 35-117 (416)
29 COG1914 MntH Mn2+ and Fe2+ tra 20.7 3.6E+02 0.0077 28.1 7.5 66 141-206 84-152 (416)
30 PF11674 DUF3270: Protein of u 20.2 83 0.0018 26.1 2.2 18 106-123 62-79 (90)
No 1
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=331.40 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=175.2
Q ss_pred ccccCchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 019016 93 EAGDDDLPGMAQAFHISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTS 172 (347)
Q Consensus 93 ~~~~~~l~ki~~~~~~Sp~~~~~i~~~~~~li~~~~~~~~~~~~~~~~~~~~f~~l~iisA~~~Afs~GaNDvaNa~G~i 172 (347)
.++|+.+.+++.+|++||++++.++.++...+. +..++ .++..+.|++||++|++++|++||+||+||+||++||+
T Consensus 126 ~~~~~~~~~Iv~swvlsPii~~~ia~~l~~~~~---~~~~~-~~~~~~~~~~~r~l~i~sa~~~aF~hGaNdvanaiGpi 201 (326)
T COG0306 126 VVDWGVLGKIVASWVLSPILGGVLAYLLYSLLR---RLIVG-KDGKRKVERIFRILLIISASLVAFAHGANDVANAIGPL 201 (326)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc-cccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHhH
Confidence 378999999999999999999655544433221 21111 13677889999999999999999999999999999999
Q ss_pred HhcC--cchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHHHHHHHHHHHHHHHHHHHHhhCCCcch
Q 019016 173 VGSG--ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVST 250 (347)
Q Consensus 173 Vgsg--~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~~a~~aAl~aAai~vliaS~lGlPVST 250 (347)
++.. ...|.|++++|++++++|++++|+||+||+|+||++++|.++ +|+++++++++.+++.+|+|+||
T Consensus 202 ~~~~~~~~~~~~v~~~g~~~i~lG~~~~g~Rvi~TvG~kIt~L~p~~g---------fsA~~~sa~~v~~as~~GlPvSt 272 (326)
T COG0306 202 VAVLISSLPPFWVLVLGGIALALGTLTGGPRVIETVGKKITELTPSRG---------FSAQLSSAITVLLASLLGLPVST 272 (326)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHccHHHHHHHhhhhcccCcchh---------HHHHHHHHHHHHHHHHcCCCccc
Confidence 9887 488999999999999999999999999999999999987776 89999999999999999999999
Q ss_pred hhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 019016 251 THCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRV 304 (347)
Q Consensus 251 THaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls~il~~ll~~i 304 (347)
||+++||++|+|.+. +.+.+||+.+++|+.+|++|||+++++++.+|++++.+
T Consensus 273 T~~~vgaI~GvG~~~-~~~~v~~~~~~~Iv~aWvvT~p~a~~ls~~~~~~~~~~ 325 (326)
T COG0306 273 THTLVGAVLGVGLAL-AGGAVNWKVIKNIVLAWVVTLPAAALLSALLYWLLLFI 325 (326)
T ss_pred ceeeeeeeeecchhh-ccCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999874 45689999999999999999999999999999998754
No 2
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=100.00 E-value=2.4e-38 Score=308.91 Aligned_cols=190 Identities=26% Similarity=0.330 Sum_probs=164.2
Q ss_pred cccccC-chhhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhc------CCc-------hhhhHHHHHHHHHHHHHHH
Q 019016 92 TEAGDD-DLPGMAQAFHISSSTASAISICIALAALTLPFFMKSLG------QGL-------DIKTKLLSHATLLFGFYMA 157 (347)
Q Consensus 92 ~~~~~~-~l~ki~~~~~~Sp~~~~~i~~~~~~li~~~~~~~~~~~------~~~-------~~~~~~f~~l~iisA~~~A 157 (347)
+.+||+ .+.|++.+|++||++++.++.++.+++. ++.++.. ... ++.++.|+.+|++++|++|
T Consensus 111 ~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~sa~~~s 187 (326)
T PF01384_consen 111 SAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIR---RIFLRRKNPVKRALRPLPILFFDPRVEKIFRFLQILSAAFVS 187 (326)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 468999 5999999999999999766666654432 2222110 011 3689999999999999999
Q ss_pred HHhhhhhhhhHHHHHHhc------C------cchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHHH
Q 019016 158 WNIGANDVANAMGTSVGS------G------ALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFA 225 (347)
Q Consensus 158 fs~GaNDvaNa~G~iVgs------g------~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~~ 225 (347)
|+||+||+||++||++.. + ...|.|+++++++++++|++++|+|++||+|++|++++|.++
T Consensus 188 fahGaND~~naig~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~i~~G~~~~G~rv~~tvG~~it~l~p~~g------- 260 (326)
T PF01384_consen 188 FAHGANDVANAIGPLAAILIIYNTGSVNSGKAEIPWWILLLGGLAIALGTLTGGWRVIRTVGEKITKLDPSRG------- 260 (326)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHHHHHhhHHHHHHhccchhccCcchh-------
Confidence 999999999999999642 1 234889999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHH
Q 019016 226 GLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVS 294 (347)
Q Consensus 226 a~~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls 294 (347)
+++++++++++++++.+|+|+||||+++||++|+|++ +|.+.|||+.+++|+.+|++|||+++++|
T Consensus 261 --~~a~l~sa~~v~~as~~GlPvStT~~~vgaivGvG~~-~~~~~V~w~~~~~I~~~Wi~T~p~a~~~S 326 (326)
T PF01384_consen 261 --FSAQLSSALTVLIASLLGLPVSTTHAIVGAIVGVGLA-RGFRSVNWKTVRKIVLGWILTLPIAALLS 326 (326)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcchhheeeeeeEeeeee-cCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999 67899999999999999999999999874
No 3
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=294.77 Aligned_cols=158 Identities=27% Similarity=0.384 Sum_probs=147.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh-----------cCcchHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019016 137 GLDIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVG-----------SGALTLRQAVLTAAVLEFSGALLMGTHVTST 205 (347)
Q Consensus 137 ~~~~~~~~f~~l~iisA~~~Afs~GaNDvaNa~G~iVg-----------sg~l~~~~alllaai~i~lGall~G~rVi~T 205 (347)
+.++++++|..+|+++||+++|+||+||++|++||+++ .+.-+|.|.++.+++++.+|.+++|+||++|
T Consensus 340 d~e~v~~lFs~lQvlTACF~sFAHGaNDVsNAIgPL~Al~~iy~~g~v~~k~~~Pi~vLlyG~~aicvGlw~~G~rVIkT 419 (512)
T KOG2493|consen 340 DSEEVSRLFSTLQVLTACFASFAHGANDVSNAIGPLVALYLIYRTGYVEQKEETPIYVLLYGGFAICVGLWTLGHRVIKT 419 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHHHHHcCCccceeccceeeeecccceeeeeehhhhHHHHHH
Confidence 44688999999999999999999999999999999964 1344688999999999999999999999999
Q ss_pred hhcCceecccccCchhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhh
Q 019016 206 MQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVI 285 (347)
Q Consensus 206 VG~~I~~l~~~~g~p~~~~~a~~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWii 285 (347)
+|+|+++++|-+| ||+++++++++++|+.+|+|+|+|||.|||+++||++ |+.+.|+|+.+++|..+|++
T Consensus 420 vG~kmt~itPasG---------FsIEfgaA~TvLiAsklGlPiStThc~VGsVvaVG~~-rs~~~V~w~~fR~I~~sW~v 489 (512)
T KOG2493|consen 420 VGKKMTEITPASG---------FSIEFGAAITVLIASKLGLPISTTHCLVGSVVAVGLA-RSLKGVDWRTFRNIFFSWFV 489 (512)
T ss_pred HhhcccccCCCcc---------ceeeHHHHHHHHHHHhcCCCcccceeeeeeEEEEEEe-ccCCCcchHHHHHhHhhhee
Confidence 9999999977666 8999999999999999999999999999999999999 67889999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 019016 286 SPILGALVSFLVYKCIRRV 304 (347)
Q Consensus 286 Tppia~lls~il~~ll~~i 304 (347)
|.|+++++|.+.+.+++..
T Consensus 490 TlPvsglisa~~m~Il~~~ 508 (512)
T KOG2493|consen 490 TLPVSGLISAGIMWILQYA 508 (512)
T ss_pred ecchHHHHHHHHHHHHHHH
Confidence 9999999999999999987
No 4
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.1e-32 Score=276.76 Aligned_cols=197 Identities=34% Similarity=0.570 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchh
Q 019016 142 TKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDT 221 (347)
Q Consensus 142 ~~~f~~l~iisA~~~Afs~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~ 221 (347)
-.+..+++++.|++++|++||||+||++|+.+++|.++.+|+.+++++++.+|+.+.|++|.+|+.+++++.+.++.+|.
T Consensus 24 ~~w~livg~i~afll~f~mGANDvaNsfgtSVgSgvltl~QA~iLAsife~lGsvl~G~~V~dt~r~gVId~s~y~~~~~ 103 (512)
T KOG2493|consen 24 FLWALIVGFIVAFLLAFGMGANDVANSFGTSVGSGVLTLKQAYILASIFETLGSVLLGASVTDTMRKGVIDFSIYNDTPK 103 (512)
T ss_pred hHHHHHHHHHHHHHHhcccCccccccccccccccCceehHHHHHHHHHHHHHHHHHccchhhhhHHhceeehHHhcCCHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 019016 222 LLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCI 301 (347)
Q Consensus 222 ~~~~a~~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls~il~~ll 301 (347)
..|.++.+++.+.++|.++|+.+++|+|+||+++|+-+|.+++.+|.+++.|..+.+|+.+|+++|.+++.++.++|.++
T Consensus 104 ~lmlgqva~L~G~a~W~l~At~~~~PvSttHsiVgatigfs~~~~g~~Gi~w~~v~~iv~swfiSpilsg~~s~ilf~~v 183 (512)
T KOG2493|consen 104 TLMLGQVAALFGSAAWLLVATFLKLPVSTTHSIVGATIGFSLVARGFNGIVWMEVIKIVASWFISPILSGIISAILFFLV 183 (512)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCccceeeeeeheeeeeeeeccccceeehhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCChhhhhhhhchhHHHHHHHHHHHHHHHHHhh
Q 019016 302 RRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLCLWFLKY 344 (347)
Q Consensus 302 ~~i~~~~il~~~~~~~~a~~~~~lP~~~~~~~~~~~~~~~~~~ 344 (347)
+.. ++|++||.+++. +.+|+++++++.+-.+.++|++
T Consensus 184 ~~s----vl~~~~p~~~gl--~~lp~~y~~~~~~n~f~ivy~G 220 (512)
T KOG2493|consen 184 DHS----VLRAANPVKNGL--RLLPVFYFITVSINVFGIVYDG 220 (512)
T ss_pred HHH----HHHhcCchhhch--hhcchhhhhhhhheeeeEEecC
Confidence 999 999999999999 9999999999999888888876
No 5
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-31 Score=259.07 Aligned_cols=178 Identities=43% Similarity=0.718 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHH
Q 019016 145 LSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLF 224 (347)
Q Consensus 145 f~~l~iisA~~~Afs~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~ 224 (347)
+..+.++.+++++|++|+||++|+|||.+++|+++++++++++++++++|+++.|.+|.+|+++++++.+.++. ....
T Consensus 4 l~~~~li~~l~~a~~iGand~ana~gtaVgs~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~~~~~~--~~~~ 81 (326)
T COG0306 4 LLVLALIAALFFAFNIGANDTANAVGTAVGSGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDPGLLND--SLTP 81 (326)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhhccCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCchhccc--hhhH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999765542 4455
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 019016 225 AGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRV 304 (347)
Q Consensus 225 ~a~~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls~il~~ll~~i 304 (347)
.+++++++++++|+++++++|+|+||||+++|+++|+|++..+. .++|+.+.+|+.+|+++|+++++++|++|..+++.
T Consensus 82 ~~~~aaLlaa~~w~~ia~~~GiP~StshaiiGaiiG~gla~~~~-~~~~~~~~~Iv~swvlsPii~~~ia~~l~~~~~~~ 160 (326)
T COG0306 82 AGVLAALLAAILWNLIATYLGIPVSTSHALIGAIIGAGLALGGG-VVDWGVLGKIVASWVLSPILGGVLAYLLYSLLRRL 160 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999996554 68999999999999999999999999999999998
Q ss_pred hhccccccCChhhhhhhhchhHHHH
Q 019016 305 CAFTLWTCTNNARCLASNMALPWLV 329 (347)
Q Consensus 305 ~~~~il~~~~~~~~a~~~~~lP~~~ 329 (347)
+.+++++.+..+..|.+.++.
T Consensus 161 ----~~~~~~~~~~~~~~r~l~i~s 181 (326)
T COG0306 161 ----IVGKDGKRKVERIFRILLIIS 181 (326)
T ss_pred ----HhccccchhHHHHHHHHHHHH
Confidence 655334444333225555544
No 6
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=99.97 E-value=5.4e-31 Score=257.23 Aligned_cols=161 Identities=46% Similarity=0.795 Sum_probs=150.3
Q ss_pred hhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceeccccc-CchhHHHHHHHHHHHHHHHHH
Q 019016 160 IGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQ-GKDTLLFAGLLSSLAAAGTWL 238 (347)
Q Consensus 160 ~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~-g~p~~~~~a~~aAl~aAai~v 238 (347)
+|+||++|++|+.|++|.++++++++++++++++|+++.|.+|.+|++++|++.+.++ ++|..++.+++|+++++++|+
T Consensus 1 ~GaND~an~~gt~Vgs~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~ 80 (326)
T PF01384_consen 1 NGANDAANSFGTAVGSRALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWL 80 (326)
T ss_pred CCccchHHHHHHHHhcCccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999998886 567777888999999999999
Q ss_pred HHHHhhCCCcchhhHhhhHHHHHhhhcCCCcccchh-hHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccCChhh
Q 019016 239 QVASYYGWPVSTTHCIVGSMVGFGLVYGGAGAVFWS-SLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNAR 317 (347)
Q Consensus 239 liaS~lGlPVSTTHaiVGsIiGvGla~~g~~~Vnw~-~l~~Iv~sWiiTppia~lls~il~~ll~~i~~~~il~~~~~~~ 317 (347)
.++|++|+|+||||+++|+++|+|++.+|.+.+||. .+.+|+.+|+++|+++++++|++|++++++ +.+++++.+
T Consensus 81 ~i~t~~glPvStThalvGal~G~~l~~~g~~~v~w~~~~~~I~~~wv~sPlia~~~a~~l~~~~~~~----~~~~~~~~~ 156 (326)
T PF01384_consen 81 LIATWLGLPVSTTHALVGALIGAGLASGGFSAVNWSKGLLKIVLSWVISPLIAFILAYILYRLIRRI----FLRRKNPVK 156 (326)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHH
Confidence 999999999999999999999999998888999999 599999999999999999999999999999 787777777
Q ss_pred hhhhhchhH
Q 019016 318 CLASNMALP 326 (347)
Q Consensus 318 ~a~~~~~lP 326 (347)
+++ +..|
T Consensus 157 ~~~--~~~~ 163 (326)
T PF01384_consen 157 RAL--RPLP 163 (326)
T ss_pred hhh--hccc
Confidence 666 5554
No 7
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=80.39 E-value=53 Score=33.11 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=36.5
Q ss_pred cccccchhhhhhccCccccccccccccccCCCCCccccccc-------------------CchhhhHHHHhcChHHHHHH
Q 019016 56 HSFASISSFAEAEGEGEEEQNEGLQVQKHHHDEPTKTEAGD-------------------DDLPGMAQAFHISSSTASAI 116 (347)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~ki~~~~~~Sp~~~~~i 116 (347)
-|-.++|.++|.++||+.+.-..-|+.++-+|+. .+++ +-..-++-+++++|+.|=..
T Consensus 77 ~~e~v~s~~~~~~e~~~~~~v~~eEL~~~~~~~s---~~~~~yl~~l~lA~iIA~iGLl~nS~avIIGAMlIaPlmgPi~ 153 (325)
T TIGR00341 77 KPEFVISPASRREEAEEKTSLPVEELYEMAKSYA---SLNKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIH 153 (325)
T ss_pred ccceecChhhhhhhccccCCcCHHHHHHHHHhhC---cCcHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHhHHHHH
Confidence 6778888776654443333222233333433333 2233 23335777788888888777
Q ss_pred HHHHHHHH
Q 019016 117 SICIALAA 124 (347)
Q Consensus 117 ~~~~~~li 124 (347)
++.+|...
T Consensus 154 a~a~g~~~ 161 (325)
T TIGR00341 154 GFAVNLSV 161 (325)
T ss_pred HHHHHHHc
Confidence 76666543
No 8
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=79.58 E-value=48 Score=35.73 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHH--HHHHHhc---CCchhhhHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHH-hcC
Q 019016 105 AFHISSSTASAISICIALAALTLP--FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIGA--NDVANAMGTSV-GSG 176 (347)
Q Consensus 105 ~~~~Sp~~~~~i~~~~~~li~~~~--~~~~~~~---~~~~~~~~~f~~l~iisA~~~Afs~Ga--NDvaNa~G~iV-gsg 176 (347)
+.++-|+++.++...+.+.+.--+ |+...+. ......+ -..+..+.+++++|..|. |-++..++.-. .++
T Consensus 348 piliiPllt~li~~~l~~~viGpp~~~l~~~l~~~l~~l~~~~--~~l~G~ilGam~~fdmggpvnkaa~~~~~~~la~~ 425 (563)
T PRK10712 348 PILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTAN--AVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQ 425 (563)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHhc
Confidence 456788888877666655432111 3332221 1122112 234566788888887766 66666666653 333
Q ss_pred cchHHHHHHHH----HHHHHHHHHh
Q 019016 177 ALTLRQAVLTA----AVLEFSGALL 197 (347)
Q Consensus 177 ~l~~~~allla----ai~i~lGall 197 (347)
..++..+...+ -+++++++++
T Consensus 426 g~~p~~a~~~a~~vpp~G~alA~~l 450 (563)
T PRK10712 426 TYAPMAAIMAAGMVPPLAMGLATMV 450 (563)
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444433333 3444455444
No 9
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=50.23 E-value=3e+02 Score=28.19 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=43.5
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHH--HHHHHhc---CCchhhhHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHh-
Q 019016 103 AQAFHISSSTASAISICIALAALTLP--FFMKSLG---QGLDIKTKLLSHATLLFGFYMAWNIGA--NDVANAMGTSVG- 174 (347)
Q Consensus 103 ~~~~~~Sp~~~~~i~~~~~~li~~~~--~~~~~~~---~~~~~~~~~f~~l~iisA~~~Afs~Ga--NDvaNa~G~iVg- 174 (347)
+.+.++-|+++.++..++.+.+.--+ ++...+. .+....+ -..+..+.++.++|..|. |-+|-+++...-
T Consensus 132 ~~piliiP~l~~li~g~lm~~vig~pi~~l~~~l~~~L~~l~~~~--~~~lG~ilG~m~afDmGGPvNK~A~~f~~~~~~ 209 (359)
T PRK10478 132 VMPIFIIPIVGTLITAGIMMWGLGEPIGALTNSLTQWLQGMQQGS--IVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVA 209 (359)
T ss_pred hcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHh
Confidence 44567788888766555544222111 2222111 1222222 234778899999999996 888888887643
Q ss_pred cCcchHH
Q 019016 175 SGALTLR 181 (347)
Q Consensus 175 sg~l~~~ 181 (347)
++...|.
T Consensus 210 ~g~~~~~ 216 (359)
T PRK10478 210 QGVYTVV 216 (359)
T ss_pred cCCchHH
Confidence 3433333
No 10
>PRK10692 hypothetical protein; Provisional
Probab=39.79 E-value=93 Score=25.92 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHHHHHHHHHHHHHHHHH
Q 019016 181 RQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQ 239 (347)
Q Consensus 181 ~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~~a~~aAl~aAai~vl 239 (347)
+.+.+++-+++.+|.++.-..|..++-+.+.+++..+ ...-.++++..++|.+|+.
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~---~~~~gal~~IFiGAllWL~ 59 (92)
T PRK10692 4 KNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQ---FFAHGALLSIFVGALLWLA 59 (92)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchH---HHHhhHHHHHHHHHHHHHh
Confidence 4567788899999988887778888888888876432 1111245666666766664
No 11
>PRK01844 hypothetical protein; Provisional
Probab=37.46 E-value=64 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=27.6
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 019016 106 FHISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSHA 148 (347)
Q Consensus 106 ~~~Sp~~~~~i~~~~~~li~~~~~~~~~~~~~~~~~~~~f~~l 148 (347)
|++-+++++++|+++||.+.-. ++.+.+.+||+-.|+.+|..
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark-~~~k~lk~NPpine~mir~M 47 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARK-YMMNYLQKNPPINEQMLKMM 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHH
Confidence 3445677888888888765322 55666667887777777643
No 12
>COG1288 Predicted membrane protein [Function unknown]
Probab=36.87 E-value=2.9e+02 Score=29.45 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=82.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccC
Q 019016 139 DIKTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQG 218 (347)
Q Consensus 139 ~~~~~~f~~l~iisA~~~Afs~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g 218 (347)
++....|..+.++.+... ..|.||..+++-. |+-+...+-++.+++=++=..+-.+.+.+|+=+...+. .++
T Consensus 301 ~eiA~~Fl~mgIiig~I~--glse~~~~~sF~~----Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~--lsg 372 (481)
T COG1288 301 PEIAAQFLAMGIIIGLIG--GLSENDIASSFIE----GASDLLGVALIIGLARGINLIMDDGMILDTILNYLASL--LSG 372 (481)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchhHHHHHHHH----hHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHH--Hhc
Confidence 344556777777766655 7799999998753 33333333334444333333445555666654322221 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC--CCcchhhHhhhHHHHHhhhcCCCcccchhhHh---hh--hhhhhhhhhHHH
Q 019016 219 KDTLLFAGLLSSLAAAGTWLQVASYYG--WPVSTTHCIVGSMVGFGLVYGGAGAVFWSSLA---RV--TSSWVISPILGA 291 (347)
Q Consensus 219 ~p~~~~~a~~aAl~aAai~vliaS~lG--lPVSTTHaiVGsIiGvGla~~g~~~Vnw~~l~---~I--v~sWiiTppia~ 291 (347)
++..+.+.....+...++ +|.|+=|+...=-+=+=++. .-++....+- +. -..=+++|--+.
T Consensus 373 ---------ls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD--~vgv~RqvvV~Afq~g~G~~n~I~PTSg~ 441 (481)
T COG1288 373 ---------LSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLAD--LVGVPRQVVVLAFQLGDGFSNIIAPTSGL 441 (481)
T ss_pred ---------CCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHH--hcCCCHHHhhhhhhhcchhhheecCchHH
Confidence 122222223333444455 77777776543222222221 1112211110 00 012256665444
Q ss_pred HHHHHHHHHHHHHhhccccccCChhhhhhhhchhHHHHHHHHHHHHHHHHH
Q 019016 292 LVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLCLWFL 342 (347)
Q Consensus 292 lls~il~~ll~~i~~~~il~~~~~~~~a~~~~~lP~~~~~~~~~~~~~~~~ 342 (347)
+.+ .+... +-+..++-+ +..|.+...++..+.+.++.
T Consensus 442 ~ma-----~La~~-------~i~y~~W~K--fv~pl~~i~~li~~~~lii~ 478 (481)
T COG1288 442 LMA-----TLAMA-------RVPYGTWLK--FVAPLLGILFLISSVVLIIA 478 (481)
T ss_pred HHH-----HHHHc-------cCChhHHHH--HHHHHHHHHHHHHHHHHHhe
Confidence 433 33221 234667777 88999998877777666654
No 13
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=36.53 E-value=4.7e+02 Score=27.69 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q 019016 281 SSWVISPILGALVSFLVYKCIRRV 304 (347)
Q Consensus 281 ~sWiiTppia~lls~il~~ll~~i 304 (347)
..|++...++.+++++++.++|+.
T Consensus 442 ~~~~~~~~vG~~v~a~~~~~~k~~ 465 (482)
T PRK11404 442 GSFYLVLAIGLALNISFIIVLKGL 465 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 579999999999999999999987
No 14
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=34.31 E-value=1.3e+02 Score=24.89 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHHHHHHHHHHHHHHHHH
Q 019016 181 RQAVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQ 239 (347)
Q Consensus 181 ~~alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~~a~~aAl~aAai~vl 239 (347)
+.+.+++-+++.+|.++.-..|..++-+.+.+++..+- ..-.++++..++|.+|+.
T Consensus 4 k~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~---~~~gal~~IFiGAllWL~ 59 (89)
T PF10762_consen 4 KNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQF---LAHGALFSIFIGALLWLV 59 (89)
T ss_pred hhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHH---HHhhHHHHHHHHHHHHHh
Confidence 35677888899999888777777787777887764321 111245666666666664
No 15
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.06 E-value=7.9e+02 Score=29.03 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=18.7
Q ss_pred HHHHHHhhCCCcchhhHhhhHHHHHhh
Q 019016 237 WLQVASYYGWPVSTTHCIVGSMVGFGL 263 (347)
Q Consensus 237 ~vliaS~lGlPVSTTHaiVGsIiGvGl 263 (347)
.+.+.+.+|++.+.-.+++|++ |+|+
T Consensus 888 ~l~~L~~lGI~~t~l~al~gal-GVgI 913 (1109)
T PRK10929 888 GLVGFSMIGIEWSKLQWLVAAL-GVGL 913 (1109)
T ss_pred HHHHHHHcCCChHHHHHHHHHH-HHHH
Confidence 3456677999999888887774 5544
No 16
>PLN02953 phosphatidate cytidylyltransferase
Probab=32.07 E-value=37 Score=35.19 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=8.6
Q ss_pred CcchhhHhhhHHHHH
Q 019016 247 PVSTTHCIVGSMVGF 261 (347)
Q Consensus 247 PVSTTHaiVGsIiGv 261 (347)
++|-.-+.-|.+-|+
T Consensus 299 ~ISPkKTwEG~iGGi 313 (403)
T PLN02953 299 SISPKKTWEGTFVGL 313 (403)
T ss_pred cCCCCCeeeeehhHH
Confidence 566666665655443
No 17
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=31.38 E-value=6.9e+02 Score=26.87 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=56.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHhhhHH------------HHHHhhcCceeccccc--------CchhH--HH-----HHH
Q 019016 175 SGALTLRQAVLTAAVLEFSGALLMGTH------------VTSTMQKGILVTSVFQ--------GKDTL--LF-----AGL 227 (347)
Q Consensus 175 sg~l~~~~alllaai~i~lGall~G~r------------Vi~TVG~~I~~l~~~~--------g~p~~--~~-----~a~ 227 (347)
-+.+..+.++.++|+.+.+|-+..+.. +.-.+|.+..|.++-. ++|.+ ++ ..-
T Consensus 86 Dr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iN 165 (498)
T COG3104 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGIN 165 (498)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEee
Confidence 345566778889999999886655443 2334788888765421 11111 11 001
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHhhhc
Q 019016 228 LSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFGLVY 265 (347)
Q Consensus 228 ~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvGla~ 265 (347)
..++.+-.++-.++..+|.++--.-+-+|-..|.-...
T Consensus 166 iGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 22445555667778889988888888888888877654
No 18
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=30.13 E-value=6.5e+02 Score=26.20 Aligned_cols=137 Identities=11% Similarity=0.073 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcCceecccccCchhHHHHHHHHHHHHHHHHHHHHHhhCCCcchhhHhhhHHHHHh
Q 019016 183 AVLTAAVLEFSGALLMGTHVTSTMQKGILVTSVFQGKDTLLFAGLLSSLAAAGTWLQVASYYGWPVSTTHCIVGSMVGFG 262 (347)
Q Consensus 183 alllaai~i~lGall~G~rVi~TVG~~I~~l~~~~g~p~~~~~a~~aAl~aAai~vliaS~lGlPVSTTHaiVGsIiGvG 262 (347)
...+-++..+...+..|.++++|+-+-+..+. ++.|... .+.. ..+ +...--+=+|-++-|+..-.=+=.-
T Consensus 324 ~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l--~~~~~~~-----~~~~-m~~-~~~~~~fli~SGsg~a~~~mpim~p 394 (465)
T PF03606_consen 324 FALVVGLARAISVFMEGGKIIDTIVHLLSNLL--SGLPGVI-----AAIG-MFL-IQFLINFLIGSGSGQAAAFMPIMPP 394 (465)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH--hcCCHHH-----HHHH-HHH-HHHHHeeecCCchHHHHHHHHhHHH
Confidence 34555677777778888888888776554332 1112211 1111 111 1111122256666655443322222
Q ss_pred hhcCCCcccchhhH---hhhh--hhhhhhhhHHHHHHHHHHHHHHHHhhccccccCChhhhhhhhchhHHHHHHHHHHHH
Q 019016 263 LVYGGAGAVFWSSL---ARVT--SSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICL 337 (347)
Q Consensus 263 la~~g~~~Vnw~~l---~~Iv--~sWiiTppia~lls~il~~ll~~i~~~~il~~~~~~~~a~~~~~lP~~~~~~~~~~~ 337 (347)
++. .-+++.... .+.. .+=.++|..+.+++.+- + -+=++.++.+ +..|.+...+...+.
T Consensus 395 lad--~~Gi~~q~~vla~q~g~gl~n~isPtsg~~m~~l~-----------i-a~V~~~~w~K--~~~~~~~~~~v~~~v 458 (465)
T PF03606_consen 395 LAD--LLGITRQTAVLAFQFGDGLGNSISPTSGVLMAVLG-----------I-AKVSYGKWVK--RTWPPMLIWFVLSIV 458 (465)
T ss_pred HHH--HcCCCHHHHHHHHHHHHHHHhhccchHHHHHHHhh-----------h-cCCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 321 011221110 0111 11245666555554221 1 1235778888 888888877777776
Q ss_pred HHHHHhh
Q 019016 338 CLWFLKY 344 (347)
Q Consensus 338 ~~~~~~~ 344 (347)
+.++.-|
T Consensus 459 ~l~ia~~ 465 (465)
T PF03606_consen 459 FLIIAVY 465 (465)
T ss_pred HHHHhcC
Confidence 6665443
No 19
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.99 E-value=4.2e+02 Score=24.01 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=40.2
Q ss_pred hhhHhhhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccCChhhhhhhhchhHHHH
Q 019016 250 TTHCIVGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLV 329 (347)
Q Consensus 250 TTHaiVGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls~il~~ll~~i~~~~il~~~~~~~~a~~~~~lP~~~ 329 (347)
|-.+.-||++|+=++ ++-.+..+++..+|+-=++-.++++..+-+.+-.. +..++... -. ++.|++.
T Consensus 65 t~lAfPGsm~GA~la-----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~----~~g~~~~~--~~--~v~~F~~ 131 (150)
T PF09512_consen 65 TLLAFPGSMFGALLA-----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKL----FMGKEAAL--FF--FVPPFLI 131 (150)
T ss_pred CHHHhccchHHHHHH-----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHH----HhCCchhh--hh--hHHHHHH
Confidence 445555666665544 11223334555555555555555555444444443 34433222 23 6667766
Q ss_pred HHHHHHHHHHHHHhh
Q 019016 330 KFLKFICLCLWFLKY 344 (347)
Q Consensus 330 ~~~~~~~~~~~~~~~ 344 (347)
+-....+.-++++|.
T Consensus 132 St~~Ga~ig~~~l~~ 146 (150)
T PF09512_consen 132 STLIGAIIGYILLKA 146 (150)
T ss_pred HHHHHHHHHHHHHHH
Confidence 655555555555554
No 20
>PRK11281 hypothetical protein; Provisional
Probab=25.19 E-value=4.9e+02 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=18.9
Q ss_pred HHHHHHHHhhCCCcchhhHhhhHHHHHhhh
Q 019016 235 GTWLQVASYYGWPVSTTHCIVGSMVGFGLV 264 (347)
Q Consensus 235 ai~vliaS~lGlPVSTTHaiVGsIiGvGla 264 (347)
...+.+...+|++.|.-.+++|+ +|+|+.
T Consensus 889 i~iliaL~~lGi~~t~L~~l~ga-LgVgIG 917 (1113)
T PRK11281 889 VGAVTAFSTLGVSWDKLQWLVAA-LSVGLG 917 (1113)
T ss_pred HHHHHHHHHcCCChHHHHHHHHH-HHHHHH
Confidence 33455567889998887776655 456543
No 21
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.77 E-value=9.9e+02 Score=28.93 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=8.4
Q ss_pred hhHHHHHhhh
Q 019016 255 VGSMVGFGLV 264 (347)
Q Consensus 255 VGsIiGvGla 264 (347)
.|+++|..+.
T Consensus 142 gGGIIG~lLs 151 (1355)
T PRK10263 142 SGGVIGSLLS 151 (1355)
T ss_pred ccchHHHHHH
Confidence 5999998886
No 22
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.55 E-value=1.7e+02 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHH
Q 019016 111 STASAISICIALAALTLPFFMKSLGQGLDIKTKLLSH 147 (347)
Q Consensus 111 ~~~~~i~~~~~~li~~~~~~~~~~~~~~~~~~~~f~~ 147 (347)
++++++|+++||.+... ++.+.+.+||+-.++..|.
T Consensus 4 ilali~G~~~Gff~ar~-~~~k~l~~NPpine~mir~ 39 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARK-YMEKQLKENPPINEKMIRA 39 (64)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHH
Confidence 35566666676654322 4455555677766666664
No 23
>PRK00523 hypothetical protein; Provisional
Probab=24.31 E-value=1.5e+02 Score=23.76 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=25.3
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 019016 107 HISSSTASAISICIALAALTLPFFMKSLGQGLDIKTKLLSHA 148 (347)
Q Consensus 107 ~~Sp~~~~~i~~~~~~li~~~~~~~~~~~~~~~~~~~~f~~l 148 (347)
++-.++++++|+++||.+... ++.+.+.+||+-.|+..|.+
T Consensus 8 I~l~i~~li~G~~~Gffiark-~~~k~l~~NPpine~mir~M 48 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKK-MFKKQIRENPPITENMIRAM 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCcCCCHHHHHHH
Confidence 333456666777777755322 55566656888777777643
No 24
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=23.79 E-value=8.5e+02 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHH--HHHHhhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceec
Q 019016 146 SHATLLFGFY--MAWNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVT 213 (347)
Q Consensus 146 ~~l~iisA~~--~Afs~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l 213 (347)
|++..+.+++ ..|..|.---+|++.-.+....-.|.|...+.-.....=..++|-|.+-.+...+++.
T Consensus 129 k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~ 198 (425)
T TIGR00835 129 RWLAVLFAVFLIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPF 198 (425)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3444443333 2234453344466665554212234454333222223334567887777777766654
No 25
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.71 E-value=1.1e+03 Score=27.34 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhHHHHHHhhcC
Q 019016 189 VLEFSGALLMGTHVTSTMQKG 209 (347)
Q Consensus 189 i~i~lGall~G~rVi~TVG~~ 209 (347)
+..+.+.+++..|+...++++
T Consensus 399 lss~la~l~~asRvl~AmArD 419 (953)
T TIGR00930 399 LSSALASLVSAPRLFQALCKD 419 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334456678889999999865
No 26
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.44 E-value=4.4e+02 Score=22.02 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=39.1
Q ss_pred CchhhhHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCceec
Q 019016 137 GLDIKTKLLSHATLLFGFYMA-WNIGANDVANAMGTSVGSGALTLRQAVLTAAVLEFSGALLMGTHVTSTMQKGILVT 213 (347)
Q Consensus 137 ~~~~~~~~f~~l~iisA~~~A-fs~GaNDvaNa~G~iVgsg~l~~~~alllaai~i~lGall~G~rVi~TVG~~I~~l 213 (347)
+.+..+..+-.+..+...+++ |=.-.|-+|+.+|.- .+.-.++..+++..+...+.-...+....+++.++
T Consensus 27 ~l~~~~~l~Wl~~~i~~l~~~ifP~~~~~vA~~lGi~------~~~n~lf~~~i~~ll~~~~~l~~~is~le~~i~~L 98 (115)
T PF10066_consen 27 KLRLKYSLLWLVFSIILLILSIFPNILDWVAKLLGIG------RPPNLLFYLGILFLLVIIFSLYVRISRLEEKIKRL 98 (115)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHCCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333333 555556666666543 33445666777777777666666666666666655
No 27
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.47 E-value=4.5e+02 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCcchhhHhhhHHH
Q 019016 228 LSSLAAAGTWLQVASYYGWPVSTTHCIVGSMV 259 (347)
Q Consensus 228 ~aAl~aAai~vliaS~lGlPVSTTHaiVGsIi 259 (347)
+++.+++.+ ..+...++.|.+...+++|+++
T Consensus 158 ~aa~~~~~~-a~~~~~~~~~~~~~~vii~~i~ 188 (193)
T PF06738_consen 158 IAAFLASLL-AALLARLGPPFSPSAVIIGAIM 188 (193)
T ss_pred HHHHHHHHH-HHHHHHhCCCcCHHHHHHHHHh
Confidence 344444433 4455578999999999999986
No 28
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=21.93 E-value=2.4e+02 Score=29.43 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhHHHHHhhhcCCCcccchhhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccCChh-----------hhhhhhc
Q 019016 255 VGSMVGFGLVYGGAGAVFWSSLARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNA-----------RCLASNM 323 (347)
Q Consensus 255 VGsIiGvGla~~g~~~Vnw~~l~~Iv~sWiiTppia~lls~il~~ll~~i~~~~il~~~~~~-----------~~a~~~~ 323 (347)
+|.|.|+..+ +..+.=+-+++.|+... +++...|.=-.+-.+. |++|+. ++.+-.|
T Consensus 35 ~GNI~GVa~A------I~~GGPGAiFWMWi~a~-~Gmatk~~E~~La~~y------R~~~~~G~~~GGP~yyi~~gl~~k 101 (416)
T PF01235_consen 35 TGNIAGVATA------IAIGGPGAIFWMWISAL-LGMATKYAEVTLAQKY------REKDEDGEYRGGPMYYIEKGLGSK 101 (416)
T ss_pred cchHHHHHHH------HHhhchhHHHHHHHHHH-HHHHHHHHHHHHHHHh------eEECCCCCEeecHHHHHHHHhccc
Q ss_pred hhHHHHHHHHHHHHHHH
Q 019016 324 ALPWLVKFLKFICLCLW 340 (347)
Q Consensus 324 ~lP~~~~~~~~~~~~~~ 340 (347)
++++++++. .++.+..
T Consensus 102 ~la~~fai~-~~~~~~~ 117 (416)
T PF01235_consen 102 WLAILFAIF-LIIAFGI 117 (416)
T ss_pred hHHHHHHHH-HHHHHHh
No 29
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=20.69 E-value=3.6e+02 Score=28.10 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhcCc---chHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 019016 141 KTKLLSHATLLFGFYMAWNIGANDVANAMGTSVGSGA---LTLRQAVLTAAVLEFSGALLMGTHVTSTM 206 (347)
Q Consensus 141 ~~~~f~~l~iisA~~~Afs~GaNDvaNa~G~iVgsg~---l~~~~alllaai~i~lGall~G~rVi~TV 206 (347)
.|+..+.+.++..+.+..+.-+.|.++..|...+-.. .++.+..++.++...+=....|.|.+|.+
T Consensus 84 r~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r~~E~~ 152 (416)
T COG1914 84 RERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYRLLERV 152 (416)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 4567778888888888899999999999999887542 34556555555544433333356665543
No 30
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=20.22 E-value=83 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=8.1
Q ss_pred HhcChHHHHHHHHHHHHH
Q 019016 106 FHISSSTASAISICIALA 123 (347)
Q Consensus 106 ~~~Sp~~~~~i~~~~~~l 123 (347)
+.++|+.++..++++++.
T Consensus 62 ~kl~t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 62 LKLNTFWAFPLAILISLA 79 (90)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 344444444444444443
Done!