Query 019016
Match_columns 347
No_of_seqs 230 out of 1568
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 22.3 95 0.0032 19.7 3.3 22 325-346 9-30 (32)
2 3iyz_A Aquaporin-4; water tran 8.2 1.3E+03 0.044 22.1 10.3 19 284-302 251-269 (340)
3 1p58_D Envelope protein M; fla 7.1 4.2E+02 0.014 20.1 3.7 18 97-114 27-44 (75)
4 4f4l_A ION transport protein; 6.2 1.1E+02 0.0039 24.2 0.0 14 62-75 95-108 (112)
5 3j27_B Matrix protein, small e 6.0 3.7E+02 0.013 20.4 2.8 18 97-114 27-44 (75)
6 4hkr_A Calcium release-activat 4.9 1.1E+03 0.036 21.4 5.5 59 277-338 110-168 (214)
7 2gsm_B Cytochrome C oxidase su 4.8 1.7E+03 0.058 20.0 7.9 21 323-343 80-100 (262)
8 3s90_C Talin-1, metavinculin; 4.4 4E+02 0.014 18.0 1.8 17 158-174 19-35 (40)
9 3rlk_A A1 protein; beta-barrel 4.1 4E+02 0.014 23.3 2.0 21 50-70 24-46 (192)
10 2w2e_A AQY1, aquaporin, aquapo 3.8 6E+02 0.02 23.4 3.2 23 282-304 244-266 (279)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=22.34 E-value=95 Score=19.75 Aligned_cols=22 Identities=32% Similarity=0.831 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc
Q 019016 325 LPWLVKFLKFICLCLWFLKYIL 346 (347)
Q Consensus 325 lP~~~~~~~~~~~~~~~~~~~~ 346 (347)
+.-++++.-|..+-||+.||+-
T Consensus 9 iaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667778888899999973
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=8.25 E-value=1.3e+03 Score=22.06 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 019016 284 VISPILGALVSFLVYKCIR 302 (347)
Q Consensus 284 iiTppia~lls~il~~ll~ 302 (347)
++.|+++++++..+|+.+.
T Consensus 251 wvgPiiGailaallY~~l~ 269 (340)
T 3iyz_A 251 WVGPIIGAVLAGALYEYVF 269 (340)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4899999999999998764
No 3
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=7.08 E-value=4.2e+02 Score=20.07 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=12.2
Q ss_pred CchhhhHHHHhcChHHHH
Q 019016 97 DDLPGMAQAFHISSSTAS 114 (347)
Q Consensus 97 ~~l~ki~~~~~~Sp~~~~ 114 (347)
+-+.|++.+..-.|.-++
T Consensus 27 ~~l~kvE~WilrNp~~al 44 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTI 44 (75)
T ss_pred HHHHHHHHHHHHChHHHH
Confidence 456677777777776663
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=6.19 E-value=1.1e+02 Score=24.19 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhhhhhccCccccc
Q 019016 62 SSFAEAEGEGEEEQ 75 (347)
Q Consensus 62 ~~~~~~~~~~~~~~ 75 (347)
.+|.+.+.||++++
T Consensus 95 ~~f~~~~~~~~~~~ 108 (112)
T 4f4l_A 95 DAMAITKEQEEEAK 108 (112)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 46766665554443
No 5
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=6.03 E-value=3.7e+02 Score=20.39 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=11.6
Q ss_pred CchhhhHHHHhcChHHHH
Q 019016 97 DDLPGMAQAFHISSSTAS 114 (347)
Q Consensus 97 ~~l~ki~~~~~~Sp~~~~ 114 (347)
+-+.|++.+..-.|.-++
T Consensus 27 ~~l~rvE~WilrNp~~al 44 (75)
T 3j27_B 27 KHAQRIETWILRHPGFTI 44 (75)
T ss_dssp HHHHHHHHHHHHCCTHHH
T ss_pred HHHHHHHHHHHHChHHHH
Confidence 356677777777776653
No 6
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=4.88 E-value=1.1e+03 Score=21.44 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=33.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHhhccccccCChhhhhhhhchhHHHHHHHHHHHHH
Q 019016 277 ARVTSSWVISPILGALVSFLVYKCIRRVCAFTLWTCTNNARCLASNMALPWLVKFLKFICLC 338 (347)
Q Consensus 277 ~~Iv~sWiiTppia~lls~il~~ll~~i~~~~il~~~~~~~~a~~~~~lP~~~~~~~~~~~~ 338 (347)
..|=.+|..+-.+|..+=.+-..++.++ ++........+.... ..+|+.+.|+.|.|-|
T Consensus 110 ~yIE~AW~fST~lGi~LFL~evall~WV-KF~~~~~~aa~~~t~--vliPv~i~F~~Fa~hF 168 (214)
T 4hkr_A 110 WYIETAWAFSTLLGLILFLLEIAILCWV-KFYDLSRRAAWSATV--VLIPVMIIFMAFAIHF 168 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTTCHHHHHHHHH--HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheE-EeecCCcHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 5678899988666555433333333333 111222223333333 6799999888888765
No 7
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=4.81 E-value=1.7e+03 Score=20.05 Aligned_cols=21 Identities=5% Similarity=-0.072 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHh
Q 019016 323 MALPWLVKFLKFICLCLWFLK 343 (347)
Q Consensus 323 ~~lP~~~~~~~~~~~~~~~~~ 343 (347)
..+|.++.+.+.+-++-.+|+
T Consensus 80 TiiP~iILi~la~pS~~~ly~ 100 (262)
T 2gsm_B 80 TIVPIVILVAIGAFSLPVLFN 100 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 578988877777777666654
No 8
>3s90_C Talin-1, metavinculin; four-helix bundle, cell adhesion, focal adhesion; 1.97A {Mus musculus}
Probab=4.37 E-value=4e+02 Score=18.02 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=12.0
Q ss_pred HHhhhhhhhhHHHHHHh
Q 019016 158 WNIGANDVANAMGTSVG 174 (347)
Q Consensus 158 fs~GaNDvaNa~G~iVg 174 (347)
|...++|++|+.+-+|.
T Consensus 19 Fv~~AkeVa~~Ta~Lv~ 35 (40)
T 3s90_C 19 FVQSAKEVANSTANLVK 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 45678888887776653
No 9
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein; HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB: 3rlc_A*
Probab=4.10 E-value=4e+02 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=13.8
Q ss_pred ccccccccccc--chhhhhhccC
Q 019016 50 KNSRLTHSFAS--ISSFAEAEGE 70 (347)
Q Consensus 50 ~~~~~~~~~~~--~~~~~~~~~~ 70 (347)
-.-+.++||+- +++--|+..+
T Consensus 24 GTG~y~CPF~cyrl~~i~e~~~~ 46 (192)
T 3rlk_A 24 GTGKYTCPFAIWSLEEVYEPPTK 46 (192)
T ss_dssp CSSCEECSSCEEEEEEEEECCCS
T ss_pred CCcceecceEEEEccceeecccC
Confidence 46789999984 5565554443
No 10
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=3.82 E-value=6e+02 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.642 Sum_probs=19.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 019016 282 SWVISPILGALVSFLVYKCIRRV 304 (347)
Q Consensus 282 sWiiTppia~lls~il~~ll~~i 304 (347)
.+++.|+++++++..+|+.+...
T Consensus 244 Vy~vgPiiGa~la~~ly~~l~~~ 266 (279)
T 2w2e_A 244 IYWLGPILGAFLAYSIWQMWKWL 266 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 34678999999999999988755
Done!