Query 019016
Match_columns 347
No_of_seqs 230 out of 1568
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 09:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 13.2 2.2E+02 0.016 20.1 6.5 26 316-343 71-96 (100)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.4 2.2E+02 0.016 20.5 5.9 62 280-343 37-102 (107)
3 d1mkma1 a.4.5.33 (A:1-75) Tran 8.4 71 0.0052 21.7 1.7 29 238-266 24-52 (75)
4 d2outa1 a.140.3.2 (A:94-131) U 6.1 62 0.0046 19.7 0.3 13 61-73 25-37 (38)
5 d2nysa1 b.136.1.2 (A:3-119) Un 5.6 56 0.0041 25.2 -0.2 21 50-70 89-109 (117)
6 d2r6gf2 f.58.1.1 (F:261-504) M 5.0 2.4E+02 0.017 22.4 3.5 28 274-301 19-46 (244)
7 d2axth1 f.23.33.1 (H:2-65) Pho 3.9 2.5E+02 0.018 19.1 2.3 27 274-300 15-41 (64)
8 d1jb0i_ f.23.17.1 (I:) Subunit 3.2 3.2E+02 0.023 16.7 2.1 22 280-301 9-30 (38)
9 d2hkua2 a.121.1.1 (A:88-208) P 2.9 1.9E+02 0.014 22.0 0.9 14 251-264 7-20 (121)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 2.9 7E+02 0.051 16.3 7.9 28 236-264 55-82 (86)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.24 E-value=2.2e+02 Score=20.15 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=18.7
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHh
Q 019016 316 ARCLASNMALPWLVKFLKFICLCLWFLK 343 (347)
Q Consensus 316 ~~~a~~~~~lP~~~~~~~~~~~~~~~~~ 343 (347)
.+..- -++|.++.+.+++-++-.+|.
T Consensus 71 LEiiW--TviP~lILi~l~~pS~~~ly~ 96 (100)
T d3dtub2 71 LEIAW--TIVPIVILVAIGAFSLPVLFN 96 (100)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555 789999988877777766653
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.42 E-value=2.2e+02 Score=20.47 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=33.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhh-ccc---cccCChhhhhhhhchhHHHHHHHHHHHHHHHHHh
Q 019016 280 TSSWVISPILGALVSFLVYKCIRRVCA-FTL---WTCTNNARCLASNMALPWLVKFLKFICLCLWFLK 343 (347)
Q Consensus 280 v~sWiiTppia~lls~il~~ll~~i~~-~~i---l~~~~~~~~a~~~~~lP~~~~~~~~~~~~~~~~~ 343 (347)
...|+.+.+...+.+..+|...+.--+ ... +...+..+..- -++|.++.+.+++-++-.+|+
T Consensus 37 ~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~W--TviP~lIL~~laipSl~~Ly~ 102 (107)
T d3ehbb2 37 FVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIW--TLVPVLILVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 445666665555555555555542100 000 00112234555 789999988888888777764
No 3
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.41 E-value=71 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=26.0
Q ss_pred HHHHHhhCCCcchhhHhhhHHHHHhhhcC
Q 019016 238 LQVASYYGWPVSTTHCIVGSMVGFGLVYG 266 (347)
Q Consensus 238 vliaS~lGlPVSTTHaiVGsIiGvGla~~ 266 (347)
-.++..+|+|-||+|=++..+.-.|+..+
T Consensus 24 ~eia~~~~~~~st~~rll~tL~~~g~l~~ 52 (75)
T d1mkma1 24 SEIAEKFNMSVSNAYKYMVVLEEKGFVLR 52 (75)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 44688999999999999999999999864
No 4
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=6.07 E-value=62 Score=19.72 Aligned_cols=13 Identities=54% Similarity=0.767 Sum_probs=9.8
Q ss_pred chhhhhhccCccc
Q 019016 61 ISSFAEAEGEGEE 73 (347)
Q Consensus 61 ~~~~~~~~~~~~~ 73 (347)
+.-||.+|||+.+
T Consensus 25 ialfapadgekse 37 (38)
T d2outa1 25 IALFAPADGEKSE 37 (38)
T ss_dssp HHHCCSCCSSCCC
T ss_pred HHhccccCccccc
Confidence 4568899998754
No 5
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.65 E-value=56 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.6
Q ss_pred cccccccccccchhhhhhccC
Q 019016 50 KNSRLTHSFASISSFAEAEGE 70 (347)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~ 70 (347)
+..+++-||+|+.+|+|..-+
T Consensus 89 ~~e~L~IPf~aI~~F~DPsv~ 109 (117)
T d2nysa1 89 TPEKLVIPYNAIRGFYDPSVN 109 (117)
T ss_dssp EEEEEEEEGGGEEEEEEGGGT
T ss_pred eeEEEEeehHHhheecCCCCC
Confidence 345699999999999987543
No 6
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.03 E-value=2.4e+02 Score=22.45 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=12.9
Q ss_pred hhHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 019016 274 SSLARVTSSWVISPILGALVSFLVYKCI 301 (347)
Q Consensus 274 ~~l~~Iv~sWiiTppia~lls~il~~ll 301 (347)
+.+..-+..-+++.+++..+++.+-..+
T Consensus 19 ~~l~~t~~~~~~~~~~~~~~~~~lA~~l 46 (244)
T d2r6gf2 19 AIFVWTVVFSLITVFLTVAVGMVLACLV 46 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555555444433
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.89 E-value=2.5e+02 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.493 Sum_probs=21.0
Q ss_pred hhHhhhhhhhhhhhhHHHHHHHHHHHH
Q 019016 274 SSLARVTSSWVISPILGALVSFLVYKC 300 (347)
Q Consensus 274 ~~l~~Iv~sWiiTppia~lls~il~~l 300 (347)
+..+|++-+|--||+++...+....++
T Consensus 15 SeyGKVaPGWGTTplMgv~m~Lf~vfl 41 (64)
T d2axth1 15 SEYGKVAPGWGTTPLMAVFMGLFLVFL 41 (64)
T ss_dssp TCSSCCCSTTTTHHHHHHHHHHHHHHH
T ss_pred cccCcccCCcCccHHHHHHHHHHHHHH
Confidence 467889999999999998887544443
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.25 E-value=3.2e+02 Score=16.68 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=14.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 019016 280 TSSWVISPILGALVSFLVYKCI 301 (347)
Q Consensus 280 v~sWiiTppia~lls~il~~ll 301 (347)
.+.|++-|+++-+.-...+.++
T Consensus 9 yLPwI~iPvv~wl~p~vvMglL 30 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVVMGLL 30 (38)
T ss_dssp THHHHHHHHHHTHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHH
Confidence 3578888888777666555544
No 9
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=2.93 E-value=1.9e+02 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=12.3
Q ss_pred hhHhhhHHHHHhhh
Q 019016 251 THCIVGSMVGFGLV 264 (347)
Q Consensus 251 THaiVGsIiGvGla 264 (347)
||.++|++.|.|.-
T Consensus 7 t~~l~~sl~g~~ap 20 (121)
T d2hkua2 7 TEKLVGSLLGPGAP 20 (121)
T ss_dssp HHHHHHHHHTTTHH
T ss_pred HHHHHHHhhccCCC
Confidence 89999999998864
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=7e+02 Score=16.26 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred HHHHHHHhhCCCcchhhHhhhHHHHHhhh
Q 019016 236 TWLQVASYYGWPVSTTHCIVGSMVGFGLV 264 (347)
Q Consensus 236 i~vliaS~lGlPVSTTHaiVGsIiGvGla 264 (347)
..+...+.+|+|++.=-+ ..++.|++..
T Consensus 55 ~~~~~L~~~Gi~~t~l~a-~~G~~gvaiG 82 (86)
T d2vv5a3 55 TLIAALGRVGVQTASVIA-VLGAAGLVVG 82 (86)
T ss_dssp HHHHHHHTTTCCSTTHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH-HHHHHHHHHH
Confidence 334556789999886444 4555666653
Done!