Query 019017
Match_columns 347
No_of_seqs 161 out of 756
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 2.8E-42 6E-47 307.5 15.1 146 1-148 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 1.7E-36 3.7E-41 261.1 13.3 142 3-148 1-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 4.8E-25 1E-29 181.5 10.9 100 4-104 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 6.3E-23 1.4E-27 162.2 5.2 72 77-148 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 1.2E-16 2.6E-21 121.1 5.9 61 4-68 1-61 (62)
6 KOG3473 RNA polymerase II tran 99.5 1.4E-13 2.9E-18 114.3 7.1 98 1-104 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 98.0 3.8E-05 8.3E-10 61.6 9.0 98 4-117 11-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.00015 3.3E-09 75.9 9.9 106 4-129 26-133 (557)
9 smart00225 BTB Broad-Complex, 97.6 0.00021 4.6E-09 53.5 6.3 85 10-112 5-90 (90)
10 PHA03098 kelch-like protein; P 97.2 0.0014 3.1E-08 67.1 9.5 97 5-123 11-109 (534)
11 PHA02790 Kelch-like protein; P 96.9 0.002 4.4E-08 66.1 7.3 96 7-120 24-121 (480)
12 KOG4441 Proteins containing BT 96.7 0.0044 9.6E-08 65.6 7.5 94 6-118 39-133 (571)
13 KOG2716 Polymerase delta-inter 91.1 1.9 4E-05 41.4 9.9 103 3-122 4-108 (230)
14 KOG3433 Protein involved in me 83.8 1.2 2.7E-05 41.5 3.7 31 103-138 170-200 (203)
15 COG5124 Protein predicted to b 79.4 1.5 3.2E-05 40.9 2.5 31 103-138 174-204 (209)
16 KOG4682 Uncharacterized conser 73.7 6.2 0.00014 41.1 5.4 110 11-141 76-189 (488)
17 KOG0783 Uncharacterized conser 69.6 6 0.00013 44.6 4.5 108 7-129 714-825 (1267)
18 PF02214 BTB_2: BTB/POZ domain 66.0 2.8 6.1E-05 33.3 0.9 83 12-111 6-94 (94)
19 KOG4350 Uncharacterized conser 64.6 30 0.00064 36.5 8.1 146 6-162 47-215 (620)
20 PF11822 DUF3342: Domain of un 62.2 13 0.00027 37.5 4.8 89 14-118 14-103 (317)
21 PF07928 Vps54: Vps54-like pro 59.0 3.1 6.8E-05 36.5 0.0 76 12-118 1-76 (135)
22 KOG2422 Uncharacterized conser 51.1 11 0.00024 40.8 2.5 41 275-316 150-193 (665)
23 PF03962 Mnd1: Mnd1 family; I 47.0 17 0.00037 33.5 2.8 41 93-138 145-187 (188)
24 KOG2002 TPR-containing nuclear 46.4 13 0.00028 42.4 2.2 7 191-197 882-888 (1018)
25 PLN03083 E3 UFM1-protein ligas 41.2 12 0.00026 41.9 0.9 30 294-323 511-541 (803)
26 PF14384 DUF4415: Domain of un 40.8 25 0.00053 26.8 2.4 26 295-320 34-59 (62)
27 KOG0511 Ankyrin repeat protein 36.6 1.2E+02 0.0026 31.8 7.1 103 14-120 301-431 (516)
28 PF03656 Pam16: Pam16; InterP 34.7 41 0.0009 29.5 3.1 36 118-153 51-88 (127)
29 PRK05365 malonic semialdehyde 31.9 27 0.00059 31.4 1.6 35 94-138 130-164 (195)
30 PF09278 MerR-DNA-bind: MerR, 29.2 69 0.0015 23.5 3.2 39 120-172 13-51 (65)
31 cd02148 Nitroreductase_5 Nitro 28.6 31 0.00067 30.7 1.4 34 95-138 124-157 (185)
32 PF05553 DUF761: Cotton fibre 25.8 60 0.0013 22.9 2.1 25 294-320 3-27 (38)
33 KOG1665 AFH1-interacting prote 25.7 75 0.0016 31.2 3.4 83 12-111 16-103 (302)
34 PF12112 DUF3579: Protein of u 25.0 40 0.00087 28.2 1.3 13 309-321 23-35 (92)
35 KOG2422 Uncharacterized conser 24.4 35 0.00076 37.2 1.1 18 130-147 24-41 (665)
36 COG4957 Predicted transcriptio 22.8 1.1E+02 0.0024 27.6 3.6 36 121-174 98-133 (148)
37 PF03131 bZIP_Maf: bZIP Maf tr 22.6 1.3E+02 0.0027 24.5 3.8 41 118-166 5-45 (92)
38 PF01886 DUF61: Protein of unk 22.4 73 0.0016 28.1 2.5 44 296-341 1-44 (132)
39 PF01484 Col_cuticle_N: Nemato 21.2 69 0.0015 22.7 1.8 23 291-313 30-52 (53)
40 PRK11053 dihydropteridine redu 20.7 67 0.0015 29.3 2.0 34 92-135 147-180 (217)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=307.53 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.1
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--------
Q 019017 1 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 72 (347)
Q Consensus 1 m~~s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~-------- 72 (347)
|++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 678999999999999999999999999999999999886422 599999 7999999999999999998643
Q ss_pred -CchhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 019017 73 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 148 (347)
Q Consensus 73 -s~~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~ 148 (347)
....++.||++|+++|..+||+|+.||+||+|++|+++||++||+||+||||+|||.+|||++|+||||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999988777765
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=261.08 Aligned_cols=142 Identities=34% Similarity=0.510 Sum_probs=129.4
Q ss_pred CccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC---Cc-----
Q 019017 3 KSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---SN----- 74 (347)
Q Consensus 3 ~s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~---s~----- 74 (347)
|++|.|.|.||.+|.|+..+|..|-+|++|+.+.+. .+.|||+| +|+|.+|.+|++||+||..... ++
T Consensus 1 ~s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rk 76 (158)
T COG5201 1 MSMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRK 76 (158)
T ss_pred CCceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhc
Confidence 578999999999999999999999999999876542 47899999 8999999999999999997421 11
Q ss_pred -hhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 019017 75 -KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 148 (347)
Q Consensus 75 -~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~ 148 (347)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.++++
T Consensus 77 s~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 77 SKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred cCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23457999999999999999999999999999999999999999999999999999999999999999999886
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=4.8e-25 Score=181.52 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.0
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCc---hhhhhh
Q 019017 4 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 80 (347)
Q Consensus 4 s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~---~ei~~W 80 (347)
++|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+...+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998776543333699999 899999999999999999875432 357999
Q ss_pred HHhhccCChHHHHHHHhhcccCCC
Q 019017 81 DEKFIRMDTKRLCELTSAADSLQL 104 (347)
Q Consensus 81 D~eFL~iD~~~LfeLI~AAnYLdI 104 (347)
|.+|++++.+.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.87 E-value=6.3e-23 Score=162.21 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.3
Q ss_pred hhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 019017 77 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 148 (347)
Q Consensus 77 i~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~ 148 (347)
+++||.+|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999987764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.66 E-value=1.2e-16 Score=121.13 Aligned_cols=61 Identities=26% Similarity=0.448 Sum_probs=53.5
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcC
Q 019017 4 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 68 (347)
Q Consensus 4 s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk 68 (347)
.+|+|+|+||++|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 379999999999999999999999999999866543 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.46 E-value=1.4e-13 Score=114.32 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=84.0
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCC-CCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhh
Q 019017 1 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMG-SSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 79 (347)
Q Consensus 1 m~~s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g-~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~ 79 (347)
|.+.+|+|+|+||.+|.|.+++|+.|++|+.||...|.. +...+.+.++ ++.+.+|+||++|+.+...+..+..++++
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 445799999999999999999999999999998866543 2346779999 79999999999999997766555567888
Q ss_pred hHHhhccCChHHHHHHHhhcccCCC
Q 019017 80 FDEKFIRMDTKRLCELTSAADSLQL 104 (347)
Q Consensus 80 WD~eFL~iD~~~LfeLI~AAnYLdI 104 (347)
| .+.+++.++|+.||+||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 8 5889999999999999975
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.02 E-value=3.8e-05 Score=61.57 Aligned_cols=98 Identities=22% Similarity=0.278 Sum_probs=74.9
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHH
Q 019017 4 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 82 (347)
Q Consensus 4 s~IkL~SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~ 82 (347)
+-++|+..||..|.|...++. .|+.++.++...+........|+++ .+++..|..+++||...... +.
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~---- 79 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN---- 79 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE----
T ss_pred CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC----
Confidence 468899999999999999995 6999999987653222222468888 79999999999999433211 11
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 019017 83 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 117 (347)
Q Consensus 83 eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~ 117 (347)
..+.+.+|+.+|++|+|+.|...|+..+..
T Consensus 80 -----~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 -----SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp ------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 246689999999999999999999988753
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.72 E-value=0.00015 Score=75.86 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=83.8
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhH
Q 019017 4 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 81 (347)
Q Consensus 4 s~IkL~SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g~g~~-~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD 81 (347)
.-|+|...+|+.|.+.+.++. .|+.++.|+.. ++.+. ....|.|. .|++.+|+.||+|+....
T Consensus 26 ~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------- 90 (557)
T PHA02713 26 CDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------- 90 (557)
T ss_pred CCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC-------------
Confidence 457888877999999999987 69999999863 33321 24568897 799999999999987632
Q ss_pred HhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 019017 82 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 129 (347)
Q Consensus 82 ~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk 129 (347)
++.+.+.+|+.||++|+|+.|.++||..+...+.-.+-=.|..
T Consensus 91 -----i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 91 -----ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred -----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 2345699999999999999999999999988776655555543
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.58 E-value=0.00021 Score=53.52 Aligned_cols=85 Identities=22% Similarity=0.249 Sum_probs=66.1
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhhccCC
Q 019017 10 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 88 (347)
Q Consensus 10 SsDG~iF~Vd~eaA~q-S~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD 88 (347)
..+|..|.|...++.. |+.++.++.... .......|.++ +++..+|..|++||..... .+.
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~-~~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~----------------~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDF-KESKKSEIYLD-DVSPEDFRALLEFLYTGKL----------------DLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCC-ccCCCCEEEec-CCCHHHHHHHHHeecCcee----------------ecC
Confidence 5578999999998875 799998876432 11135678898 7999999999999986532 123
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 019017 89 TKRLCELTSAADSLQLKPLVDLTS 112 (347)
Q Consensus 89 ~~~LfeLI~AAnYLdI~~LldL~c 112 (347)
...+.+|+.+|.++++++|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336889999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.24 E-value=0.0014 Score=67.11 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=75.1
Q ss_pred cEEEE-eCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHH
Q 019017 5 YIWLQ-TADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 82 (347)
Q Consensus 5 ~IkL~-SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~ 82 (347)
-++|. +.+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.
T Consensus 11 Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~-------------- 70 (534)
T PHA03098 11 DESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGK-------------- 70 (534)
T ss_pred CEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCc--------------
Confidence 35555 468999999999987 499999987633 22 4668897 5 9999999999987654
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 019017 83 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 123 (347)
Q Consensus 83 eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKT 123 (347)
+.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 71 --~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 71 --INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred --eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 234556688999999999999999999988877654433
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.94 E-value=0.002 Score=66.09 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=69.1
Q ss_pred EEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhh
Q 019017 7 WLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 84 (347)
Q Consensus 7 kL~SsDG~iF~Vd~eaA-~qS~tIr~mL~d~g~g~~~~~~IpLP-~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eF 84 (347)
.+...-|..|.+.+.++ ..|+.++.|+.. ++.++. ..|.+. ..|++.+|+.||+|+..-+
T Consensus 24 ~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~---------------- 85 (480)
T PHA02790 24 TIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK---------------- 85 (480)
T ss_pred eEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee----------------
Confidence 34556688999999995 469999999863 343332 234431 2699999999999974332
Q ss_pred ccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 019017 85 IRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 120 (347)
Q Consensus 85 L~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~Ik 120 (347)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 234556688888888888888888888887765544
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.67 E-value=0.0044 Score=65.55 Aligned_cols=94 Identities=26% Similarity=0.323 Sum_probs=74.7
Q ss_pred EEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhh
Q 019017 6 IWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 84 (347)
Q Consensus 6 IkL~SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eF 84 (347)
+.|. .+++.|.+.+-++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+....
T Consensus 39 v~L~-v~~~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~---------------- 99 (571)
T KOG4441|consen 39 VTLL-VGDREFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGK---------------- 99 (571)
T ss_pred EEEE-ECCeeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcce----------------
Confidence 3444 44588888888876 59999999873 3444456789998 699999999999987665
Q ss_pred ccCChHHHHHHHhhcccCCCchHHHHHHHHHHHH
Q 019017 85 IRMDTKRLCELTSAADSLQLKPLVDLTSRALARI 118 (347)
Q Consensus 85 L~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~ 118 (347)
+.++.+.+-+|+.||.+|+|+++++.||..+...
T Consensus 100 i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 100 LEISEDNVQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3467778899999999999999999999887653
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=91.14 E-value=1.9 Score=41.39 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=76.0
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcC-CCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhh
Q 019017 3 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKG-MGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 80 (347)
Q Consensus 3 ~s~IkL~SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g-~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~W 80 (347)
...|+| ---|.+|.-+...+. +.+.++.|+.... ...+....|=+ .-|+.-+..|+.|++--..+ +++
T Consensus 4 ~~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe- 73 (230)
T KOG2716|consen 4 SETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE- 73 (230)
T ss_pred cceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc-
Confidence 345554 456889999988886 4778888876442 12223455666 58999999999999843322 222
Q ss_pred HHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 019017 81 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 122 (347)
Q Consensus 81 D~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGK 122 (347)
+...|-+|+.=|.|..+.+|+++|..+++..+.+.
T Consensus 74 -------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 -------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred -------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 35678999999999999999999999999987775
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.80 E-value=1.2 Score=41.49 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=27.1
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 019017 103 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 138 (347)
Q Consensus 103 dI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~T 138 (347)
+|--|.++||+.. |.-+.+||+.||||.||.
T Consensus 170 nI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 170 NIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred hHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 7777888888776 899999999999999884
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=79.35 E-value=1.5 Score=40.93 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=25.7
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 019017 103 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 138 (347)
Q Consensus 103 dI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~T 138 (347)
+|.-|.++.|+.. |.-|++||+.||||.||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 5667778777665 889999999999999874
No 16
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.72 E-value=6.2 Score=41.06 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=72.3
Q ss_pred CCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCc----ccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhhcc
Q 019017 11 ADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY----AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIR 86 (347)
Q Consensus 11 sDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~----~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~ 86 (347)
.=|....+..--+.||+.+..|....- .++... .||=| +|+-..|.-++-=+.+.- +.
T Consensus 76 alg~eWrlHk~yL~QS~yf~smf~Gtw-~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------ve 137 (488)
T KOG4682|consen 76 ALGFEWRLHKPYLFQSEYFKSMFSGTW-KESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VE 137 (488)
T ss_pred hccceeeeeeeeeeccHHHHHHhcccc-ChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------ee
Confidence 346777777778888888888765321 111112 34555 677777776554332211 35
Q ss_pred CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHh
Q 019017 87 MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 141 (347)
Q Consensus 87 iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEE 141 (347)
++.+.+..++.||.+|.+++|++-|...+-..|+-| -+..++...+-+-.|.
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspk---ta~~yYea~ckYgle~ 189 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPK---TACGYYEAACKYGLES 189 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChh---hhhHhhhhhhhhhhHH
Confidence 788899999999999999999999998876655544 4555665555444443
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=69.56 E-value=6 Score=44.58 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=68.2
Q ss_pred EEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccc-ccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhh
Q 019017 7 WLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAI-SLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKF 84 (347)
Q Consensus 7 kL~SsDG~iF~Vd~eaA~-qS~tIr~mL~d~g~g~~~~~~I-pLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eF 84 (347)
.+...||.+|.....++. .+.++..|+.-.-+.. ..... -.| ++.++|+-|++|+.--- ...|
T Consensus 714 ~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~-sS~t~~~~p--~~~e~m~ivLdylYs~d------------~~~~ 778 (1267)
T KOG0783|consen 714 VIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMES-SSITVNLSP--LTVEHMSIVLDYLYSDD------------KVEL 778 (1267)
T ss_pred EEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhh-ccceeecCc--chHHHHHHHHHHHHccc------------hHHH
Confidence 445569998876554442 2344444433221111 11222 233 77999999999975321 1223
Q ss_pred cc--CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 019017 85 IR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 129 (347)
Q Consensus 85 L~--iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk 129 (347)
++ -..+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 779 ~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 779 FKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred HhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 32 2445599999999999999999999999999888887655543
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=66.00 E-value=2.8 Score=33.32 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=52.0
Q ss_pred CCCEEEecHHHHHH--cHHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-CCCCCCchhhhhhHHhhcc
Q 019017 12 DGSIQQVEQEVAMF--CPLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 86 (347)
Q Consensus 12 DG~iF~Vd~eaA~q--S~tIr~mL~d~--g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~H-k~~~~s~~ei~~WD~eFL~ 86 (347)
-|+.|.+..+.+.. ...+..++... .........+=+ +-++..++.|+.|++.. .-+.+
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~~-------------- 69 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPIP-------------- 69 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCCC--------------
Confidence 58999999999973 23455555432 111123455655 58999999999999984 21111
Q ss_pred CChHHHHHHHhhcccCCCchH-HHHH
Q 019017 87 MDTKRLCELTSAADSLQLKPL-VDLT 111 (347)
Q Consensus 87 iD~~~LfeLI~AAnYLdI~~L-ldL~ 111 (347)
+...+-.|...|.|.+|..| ++.|
T Consensus 70 -~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 -DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred -CchhHHHHHHHHHHcCCCccccCCC
Confidence 22346778889999999988 6543
No 19
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.62 E-value=30 Score=36.46 Aligned_cols=146 Identities=15% Similarity=0.224 Sum_probs=93.9
Q ss_pred EEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCC--CCC---------
Q 019017 6 IWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVP--GSS--------- 73 (347)
Q Consensus 6 IkL~SsDG~iF~Vd~eaA-~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~--~~s--------- 73 (347)
++++-.| ..|...+-++ ..|..++.+|- .|+.++....|||. .-++..++.++.|+..-+-. +-.
T Consensus 47 Vtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~Ls 123 (620)
T KOG4350|consen 47 VTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLS 123 (620)
T ss_pred eEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHHHH
Confidence 3444444 4555544444 45889987653 55655566789996 57799999999998765532 100
Q ss_pred ----------chhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhh
Q 019017 74 ----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKL 143 (347)
Q Consensus 74 ----------~~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~ 143 (347)
...++++-.+.+ ..+.+|-++.||.+.+++.|.++||..+ .+.+.++-.--+. +-++.+-.+
T Consensus 124 lAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sF-n~LSk~sL~ 195 (620)
T KOG4350|consen 124 LAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSF-NRLSKDSLK 195 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcch-hhhhHHHHH
Confidence 122344444444 4456888999999999999999999665 6677776432221 125555555
Q ss_pred ccccc-CCCchhHHHHHHHH
Q 019017 144 EPLKN-TTDDPRIRLLNRLY 162 (347)
Q Consensus 144 Ei~~~-~~~dp~~~~ln~~~ 162 (347)
+++.- -|+.|....++-+.
T Consensus 196 e~l~RDsFfApE~~IFlAv~ 215 (620)
T KOG4350|consen 196 ELLARDSFFAPELKIFLAVR 215 (620)
T ss_pred HHHhhhcccchHHHHHHHHH
Confidence 55443 67888888777553
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=62.21 E-value=13 Score=37.47 Aligned_cols=89 Identities=8% Similarity=0.098 Sum_probs=61.0
Q ss_pred CEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhhccCChHHH
Q 019017 14 SIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRL 92 (347)
Q Consensus 14 ~iF~Vd~eaA~q-S~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD~~~L 92 (347)
+.|..+...+.. .++++..+...-.+.....+|+|.+.-+-.|++=++.|++... | .++.+.+
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---p-------------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---P-------------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---C-------------cCCcCcE
Confidence 578888888754 7888887743100111344566643466777888888877611 1 2455667
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHH
Q 019017 93 CELTSAADSLQLKPLVDLTSRALARI 118 (347)
Q Consensus 93 feLI~AAnYLdI~~LldL~c~~VA~~ 118 (347)
..|+..|+||+|++|++.|-.++...
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHh
Confidence 88899999999999999999888544
No 21
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=59.02 E-value=3.1 Score=36.52 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhhccCChHH
Q 019017 12 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 91 (347)
Q Consensus 12 DG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~iD~~~ 91 (347)
||+.|.|...++...++|.+.+. ....+| .+.++++.++++|++... ..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~fN---------------------Sr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLFN---------------------SR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHHH---------------------HH
Confidence 67888888888877777765432 223467 578888888888865543 44
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHH
Q 019017 92 LCELTSAADSLQLKPLVDLTSRALARI 118 (347)
Q Consensus 92 LfeLI~AAnYLdI~~LldL~c~~VA~~ 118 (347)
.++|+..|--..--+|-.++.+.+|-.
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALa 76 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALA 76 (135)
T ss_dssp ---------------------------
T ss_pred HHHHHhccchhhccCcCcchHHHHHHH
Confidence 778888888888888888877776643
No 22
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=11 Score=40.81 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=19.1
Q ss_pred ccccccCCCCCCc---CChHHHHHHhHHHHHHHHHhcCChhHHHH
Q 019017 275 RKVDFDDVDIDDE---IDPALKEKLDREVEDFARRLNSDWPERMQ 316 (347)
Q Consensus 275 ~~~~~~~~~~~~~---~d~~~~~~~~~~~~~f~~~~~~~~~~~~~ 316 (347)
|-+.+.+.+.++. ++-.+-++.-+=+-+| +.||-+-+=+.|
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~-~~lnpdtE~k~~ 193 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVDF-KKLNPDTEFKLQ 193 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHhh-hccCCCchhhhh
Confidence 3455655555543 3323333333333233 567776655443
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.05 E-value=17 Score=33.54 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 019017 93 CELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 138 (347)
Q Consensus 93 feLI~AAnYL--dI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~T 138 (347)
..+..||+.. +|..|...|+.. -|.+.++|++.||||+||.
T Consensus 145 ~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 145 KIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 3444466543 566666666654 3899999999999999884
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=46.44 E-value=13 Score=42.36 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.7
Q ss_pred HHHHhhh
Q 019017 191 DDLLQFI 197 (347)
Q Consensus 191 d~ll~fi 197 (347)
++.+.|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 25
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=41.23 E-value=12 Score=41.92 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHH-HhcCChhHHHHHHHhcCC
Q 019017 294 EKLDREVEDFAR-RLNSDWPERMQEILSLGH 323 (347)
Q Consensus 294 ~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~ 323 (347)
+.|-+++.+-.| -||..|.+|.++++...+
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~~ 541 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTENA 541 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 466667666554 589999999999875433
No 26
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=40.83 E-value=25 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 019017 295 KLDREVEDFARRLNSDWPERMQEILS 320 (347)
Q Consensus 295 ~~~~~~~~f~~~~~~~~~~~~~~~~~ 320 (347)
.||.+|-+|.+..-..|+-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 46788999999999999999999885
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=36.56 E-value=1.2e+02 Score=31.85 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=69.9
Q ss_pred CEEEecHHHHHHcHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhcCCCCC----C-------------
Q 019017 14 SIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S------------- 73 (347)
Q Consensus 14 ~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~---IpLP~~Vss~iLkkIIEYCe~Hk~~~~----s------------- 73 (347)
..+.+...++..+.+++.|+...-...+.+.. ..|| +..+.+.+.++.|+..|+.+-+ +
T Consensus 301 ~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 34777888888888888887654332222443 4588 7889999999999999987521 0
Q ss_pred --------chhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 019017 74 --------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 120 (347)
Q Consensus 74 --------~~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~Ik 120 (347)
...+..| .+| +|.-.+++++.-|.-+....|=..+...+|+.+.
T Consensus 380 dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 380 DRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 0123445 222 2444578888888888888888888888887654
No 28
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=34.73 E-value=41 Score=29.49 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=18.9
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhccccc--CCCch
Q 019017 118 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKN--TTDDP 153 (347)
Q Consensus 118 ~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~--~~~dp 153 (347)
...|.|.+|-++++|++...++||-.+.-.. ..+||
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 4569999999999999998998887664443 23566
No 29
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=31.92 E-value=27 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 019017 94 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 138 (347)
Q Consensus 94 eLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~T 138 (347)
.|+.||..|++.. ..+.|-..+.+++.|||++++.
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~ 164 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWK 164 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCee
Confidence 3888888888876 2445778899999999986553
No 30
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=29.21 E-value=69 Score=23.53 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.7
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhcccccCCCchhHHHHHHHHHHHHHHHHHH
Q 019017 120 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 172 (347)
Q Consensus 120 kGKTpEEIRk~FgI~~D~TpEEE~Ei~~~~~~dp~~~~ln~~~ak~~~el~~~ 172 (347)
-|.|.+||++++.++++ .+|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 49999999999988764 2234444556667788887665
No 31
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=28.63 E-value=31 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 019017 95 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 138 (347)
Q Consensus 95 LI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~T 138 (347)
|+.||..|++.. ..|.|-..+++++.|||++++.
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~ 157 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWR 157 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeE
Confidence 888888888775 3456778899999999997653
No 32
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=25.82 E-value=60 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHh
Q 019017 294 EKLDREVEDFARRLNSDWPERMQEILS 320 (347)
Q Consensus 294 ~~~~~~~~~f~~~~~~~~~~~~~~~~~ 320 (347)
+.||+-+|+|.++.+-.| |||..-|
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S 27 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQES 27 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999887 5664433
No 33
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.67 E-value=75 Score=31.16 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=55.5
Q ss_pred CCCEEEe--cHHHHHH-cHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhhhhhHHhhcc
Q 019017 12 DGSIQQV--EQEVAMF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIR 86 (347)
Q Consensus 12 DG~iF~V--d~eaA~q-S~tIr~mL~d~g~g~--~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~s~~ei~~WD~eFL~ 86 (347)
.|+.|-- +.-+.+. -.++..|+...|.+. ++...+-| .-++.-++-|+.|+.+-+-+.
T Consensus 16 gGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~~--------------- 78 (302)
T KOG1665|consen 16 GGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIPS--------------- 78 (302)
T ss_pred CCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCceee---------------
Confidence 4666643 3333332 345667877776542 23345555 588999999999998876432
Q ss_pred CChHHHHHHHhhcccCCCchHHHHH
Q 019017 87 MDTKRLCELTSAADSLQLKPLVDLT 111 (347)
Q Consensus 87 iD~~~LfeLI~AAnYLdI~~LldL~ 111 (347)
.+.-.+++++.+|.|.+|-+|++-.
T Consensus 79 ~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 79 LSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred cCCccHHHHHHHhhHHhhHhHHhHH
Confidence 2334588999999999999998743
No 34
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=24.97 E-value=40 Score=28.20 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=10.8
Q ss_pred CChhHHHHHHHhc
Q 019017 309 SDWPERMQEILSL 321 (347)
Q Consensus 309 ~~~~~~~~~~~~~ 321 (347)
|||.||+-.+|+.
T Consensus 23 SDWaERL~gvla~ 35 (92)
T PF12112_consen 23 SDWAERLCGVLAS 35 (92)
T ss_dssp TTHHHHHHHTT-E
T ss_pred ccHHHHHHHHHHc
Confidence 8999999988775
No 35
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.45 E-value=35 Score=37.19 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=7.4
Q ss_pred HcCCCCCCChHhhhcccc
Q 019017 130 IFHLPDDLTEEEKLEPLK 147 (347)
Q Consensus 130 ~FgI~~D~TpEEE~Ei~~ 147 (347)
.+...+|-..||.-.-+.
T Consensus 24 ~~d~esded~e~s~~k~e 41 (665)
T KOG2422|consen 24 ANDMESDEDTEESGQKRE 41 (665)
T ss_pred hccccccccchhcccccc
Confidence 334444444444433333
No 36
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=22.78 E-value=1.1e+02 Score=27.63 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=28.1
Q ss_pred CCCHHHHHhHcCCCCCCChHhhhcccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 019017 121 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREK 174 (347)
Q Consensus 121 GKTpEEIRk~FgI~~D~TpEEE~Ei~~~~~~dp~~~~ln~~~ak~~~el~~~~~ 174 (347)
|.||+|-|+.||+|.|+. |.---||..|.+|-+.-.
T Consensus 98 gmTPd~YR~KW~LP~dYP------------------MvAPnYAa~RS~LAK~mG 133 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYP------------------MVAPNYAAARSQLAKAMG 133 (148)
T ss_pred CCCHHHHHHhcCCCCCCC------------------ccchHHHHHHHHHHHHhC
Confidence 899999999999999873 223458989998866533
No 37
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=22.62 E-value=1.3e+02 Score=24.45 Aligned_cols=41 Identities=32% Similarity=0.356 Sum_probs=29.3
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccccCCCchhHHHHHHHHHHHH
Q 019017 118 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 166 (347)
Q Consensus 118 ~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~~~~dp~~~~ln~~~ak~~ 166 (347)
.|...+++|+..++ ..+|+++...+..- +=++=||.||...
T Consensus 5 eL~~m~v~efn~~L---~~lt~~q~~~lK~~-----RRr~KNR~~A~~c 45 (92)
T PF03131_consen 5 ELVSMSVREFNRLL---RGLTEEQIAELKQR-----RRRLKNRGYAQNC 45 (92)
T ss_dssp HHHHS-HHHHHHHC---TTS-HHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHH---HcCCHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45567899999888 78999888776552 4557899999853
No 38
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=22.37 E-value=73 Score=28.08 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=30.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhcCCCCccceeecCCCCccccc
Q 019017 296 LDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRY 341 (347)
Q Consensus 296 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (347)
|||=++...+++|+.||.+=.-+-.+-+|-+| +.+..||+.+++
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P--~i~lrdG~~h~f 44 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKP--SIILRDGSRHRF 44 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCC--eEEecCCCEEEE
Confidence 56778888999999998766555555556665 345557776654
No 39
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=21.20 E-value=69 Score=22.73 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHHhcCChhH
Q 019017 291 ALKEKLDREVEDFARRLNSDWPE 313 (347)
Q Consensus 291 ~~~~~~~~~~~~f~~~~~~~~~~ 313 (347)
-++.+++.|++.|..+-|..|.|
T Consensus 30 ~~~~~~~~em~~fk~~s~d~W~~ 52 (53)
T PF01484_consen 30 NFQSELDDEMEEFKEISDDAWNE 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999954
No 40
>PRK11053 dihydropteridine reductase; Provisional
Probab=20.70 E-value=67 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCC
Q 019017 92 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPD 135 (347)
Q Consensus 92 LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~ 135 (347)
+..|+.||..|++..- .|.|-.++.+++.||||+
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 3466677777776543 455778999999999984
Done!