Query 019021
Match_columns 347
No_of_seqs 126 out of 1100
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00946 2a69 he Auxin Efflux 100.0 6.1E-49 1.3E-53 370.0 32.7 311 7-344 3-321 (321)
2 PRK09903 putative transporter 100.0 1E-47 2.3E-52 360.3 34.9 303 9-345 4-312 (314)
3 COG0679 Predicted permeases [G 100.0 1.1E-45 2.4E-50 345.4 35.3 305 7-344 2-308 (311)
4 PF03547 Mem_trans: Membrane t 100.0 6E-44 1.3E-48 344.3 31.5 329 10-340 2-385 (385)
5 KOG2722 Predicted membrane pro 100.0 1.2E-31 2.6E-36 243.9 10.0 343 2-345 2-405 (408)
6 TIGR00841 bass bile acid trans 99.2 3.4E-10 7.5E-15 104.8 13.6 110 235-344 11-121 (286)
7 COG0385 Predicted Na+-dependen 98.7 4E-07 8.7E-12 84.1 15.6 109 235-343 41-150 (319)
8 PF01758 SBF: Sodium Bile acid 98.7 3.6E-07 7.9E-12 79.3 13.3 107 238-344 4-112 (187)
9 TIGR00832 acr3 arsenical-resis 98.6 1.5E-06 3.3E-11 82.0 17.0 140 197-343 8-156 (328)
10 PF13593 DUF4137: SBF-like CPA 98.2 4.4E-05 9.6E-10 71.6 13.9 140 199-343 1-146 (313)
11 COG0798 ACR3 Arsenite efflux p 97.7 0.001 2.2E-08 61.7 13.5 143 192-343 11-164 (342)
12 PF05982 DUF897: Domain of unk 97.2 0.21 4.6E-06 46.5 24.3 251 16-289 1-264 (327)
13 TIGR00841 bass bile acid trans 97.0 0.0074 1.6E-07 56.0 11.2 130 9-148 135-272 (286)
14 PF05684 DUF819: Protein of un 97.0 0.36 7.9E-06 46.5 27.9 308 10-334 21-363 (378)
15 PF04172 LrgB: LrgB-like famil 96.5 0.22 4.7E-06 44.1 15.9 141 194-343 16-158 (215)
16 PRK04288 antiholin-like protei 96.4 0.28 6.2E-06 43.7 15.9 142 194-343 32-174 (232)
17 PRK10711 hypothetical protein; 96.3 0.22 4.8E-06 44.3 15.0 142 194-343 27-169 (231)
18 COG3329 Predicted permease [Ge 96.2 0.95 2.1E-05 41.7 22.5 230 14-251 16-266 (372)
19 TIGR00659 conserved hypothetic 96.2 0.35 7.5E-06 43.0 15.3 142 194-343 26-168 (226)
20 COG1346 LrgB Putative effector 96.1 0.41 8.9E-06 42.3 14.9 143 193-343 28-171 (230)
21 COG0385 Predicted Na+-dependen 95.7 0.13 2.9E-06 47.9 10.8 128 16-149 169-302 (319)
22 PF03601 Cons_hypoth698: Conse 95.1 0.56 1.2E-05 43.9 13.2 139 197-343 25-169 (305)
23 PF03601 Cons_hypoth698: Conse 93.9 3.9 8.4E-05 38.3 15.8 212 10-262 86-301 (305)
24 PF13593 DUF4137: SBF-like CPA 93.4 1.4 3.1E-05 41.4 12.0 126 12-142 162-302 (313)
25 PF03390 2HCT: 2-hydroxycarbox 92.3 12 0.00025 36.5 26.7 268 17-293 63-365 (414)
26 PF03812 KdgT: 2-keto-3-deoxyg 91.9 3.9 8.4E-05 38.1 12.3 129 202-337 16-154 (314)
27 TIGR03082 Gneg_AbrB_dup membra 90.7 9 0.00019 32.0 13.8 121 205-340 28-153 (156)
28 PRK03562 glutathione-regulated 89.6 18 0.00038 37.5 16.3 110 196-313 26-138 (621)
29 COG2855 Predicted membrane pro 89.6 4 8.6E-05 38.4 10.4 132 198-338 37-170 (334)
30 TIGR00783 ccs citrate carrier 89.2 2.5 5.4E-05 40.1 8.9 99 17-116 207-314 (347)
31 KOG2718 Na+-bile acid cotransp 88.6 0.73 1.6E-05 44.0 5.0 105 238-344 119-227 (371)
32 PRK10669 putative cation:proto 88.3 24 0.00051 36.0 16.1 137 199-343 249-387 (558)
33 PRK12460 2-keto-3-deoxyglucona 88.2 3.2 6.9E-05 38.7 8.7 116 202-321 16-135 (312)
34 PRK03659 glutathione-regulated 87.6 37 0.0008 35.0 30.6 136 199-342 238-375 (601)
35 TIGR00698 conserved hypothetic 87.4 9.2 0.0002 36.3 11.5 140 198-344 31-176 (335)
36 TIGR00783 ccs citrate carrier 86.6 30 0.00065 32.9 24.2 101 31-132 6-118 (347)
37 COG0798 ACR3 Arsenite efflux p 84.8 18 0.00038 34.2 11.6 56 77-134 255-311 (342)
38 KOG2532 Permease of the major 82.6 55 0.0012 32.6 17.4 36 192-231 250-290 (466)
39 PRK03659 glutathione-regulated 82.4 49 0.0011 34.1 15.1 110 197-314 27-139 (601)
40 COG3493 CitS Na+/citrate sympo 80.5 56 0.0012 31.4 22.8 80 18-99 81-168 (438)
41 TIGR00793 kdgT 2-keto-3-deoxyg 78.7 6.5 0.00014 36.5 6.4 86 233-321 46-140 (314)
42 TIGR00932 2a37 transporter, mo 77.5 56 0.0012 29.6 16.8 88 192-289 10-101 (273)
43 PRK10669 putative cation:proto 73.9 1.1E+02 0.0023 31.2 15.4 108 197-312 28-138 (558)
44 PRK12460 2-keto-3-deoxyglucona 73.0 83 0.0018 29.5 16.4 130 201-342 169-302 (312)
45 KOG4821 Predicted Na+-dependen 72.0 6.8 0.00015 34.4 4.5 93 242-337 64-161 (287)
46 PF05145 AmoA: Putative ammoni 71.7 90 0.002 29.3 12.8 130 201-344 5-135 (318)
47 TIGR00844 c_cpa1 na(+)/h(+) an 66.9 1.8E+02 0.004 31.0 15.4 89 195-289 35-130 (810)
48 PLN03159 cation/H(+) antiporte 66.3 1.9E+02 0.0042 31.1 15.7 155 187-347 55-226 (832)
49 PRK03562 glutathione-regulated 65.7 1.7E+02 0.0037 30.3 29.6 118 224-343 260-379 (621)
50 TIGR00698 conserved hypothetic 60.2 1.6E+02 0.0034 28.0 21.7 62 199-266 251-313 (335)
51 PRK05326 potassium/proton anti 58.6 2.2E+02 0.0047 29.1 14.8 87 197-290 28-118 (562)
52 PF05684 DUF819: Protein of un 58.2 1.8E+02 0.0039 28.1 16.2 136 198-342 25-167 (378)
53 PF11299 DUF3100: Protein of u 55.3 34 0.00074 30.5 5.8 120 195-321 18-141 (241)
54 TIGR00844 c_cpa1 na(+)/h(+) an 48.6 3.2E+02 0.0069 29.3 12.5 109 199-312 265-379 (810)
55 KOG3626 Organic anion transpor 47.7 1.6E+02 0.0035 31.1 10.2 27 188-214 380-406 (735)
56 PRK05326 potassium/proton anti 47.2 2.9E+02 0.0063 28.1 12.1 108 198-312 244-351 (562)
57 TIGR00832 acr3 arsenical-resis 44.2 2.8E+02 0.0061 26.1 23.7 71 267-337 252-322 (328)
58 COG3493 CitS Na+/citrate sympo 41.6 3E+02 0.0065 26.7 10.0 95 20-115 296-399 (438)
59 COG5505 Predicted integral mem 40.0 3.3E+02 0.007 25.7 22.0 300 14-334 31-369 (384)
60 COG5546 Small integral membran 39.8 48 0.0011 23.8 3.5 35 197-231 8-45 (80)
61 COG2855 Predicted membrane pro 37.2 3.7E+02 0.008 25.5 19.1 44 220-264 270-313 (334)
62 PF10766 DUF2592: Protein of u 36.0 52 0.0011 20.6 2.8 25 190-214 3-27 (41)
63 PF03219 TLC: TLC ATP/ADP tran 33.7 5.1E+02 0.011 26.1 19.5 47 16-62 31-80 (491)
64 PF00999 Na_H_Exchanger: Sodiu 32.8 21 0.00045 34.1 1.1 130 198-335 234-369 (380)
65 PRK03818 putative transporter; 31.8 5.7E+02 0.012 26.1 14.2 135 202-341 34-176 (552)
66 COG3180 AbrB Putative ammonia 29.9 5E+02 0.011 24.9 15.8 143 190-343 4-167 (352)
67 PF03222 Trp_Tyr_perm: Tryptop 29.2 5.3E+02 0.012 24.9 19.9 48 295-342 184-238 (394)
68 PF03956 DUF340: Membrane prot 28.5 3.9E+02 0.0084 23.1 11.8 122 202-341 2-136 (191)
69 TIGR00807 malonate_madL malona 27.7 3.1E+02 0.0068 21.8 7.7 76 16-94 39-117 (125)
70 COG4389 Site-specific recombin 27.7 1.5E+02 0.0033 29.4 5.8 49 131-201 611-659 (677)
71 PRK15060 L-dehydroascorbate tr 27.5 6E+02 0.013 25.0 14.4 87 220-322 295-393 (425)
72 PF03812 KdgT: 2-keto-3-deoxyg 27.2 4.1E+02 0.0089 25.0 8.4 109 9-130 170-281 (314)
73 TIGR03802 Asp_Ala_antiprt aspa 26.5 7.1E+02 0.015 25.5 12.0 131 204-346 41-183 (562)
74 COG1593 DctQ TRAP-type C4-dica 25.8 6.2E+02 0.013 24.5 18.5 87 219-321 248-346 (379)
75 PF03616 Glt_symporter: Sodium 25.4 2.7E+02 0.0058 26.8 7.3 96 15-111 247-348 (368)
76 COG2991 Uncharacterized protei 24.2 85 0.0018 22.5 2.6 24 6-29 3-26 (77)
77 COG2271 UhpC Sugar phosphate p 22.9 4E+02 0.0086 26.4 7.8 24 191-214 243-266 (448)
78 COG2211 MelB Na+/melibiose sym 22.1 8E+02 0.017 24.5 17.5 26 189-214 225-250 (467)
79 PRK05274 2-keto-3-deoxyglucona 21.7 2.2E+02 0.0048 26.9 5.7 128 203-342 178-310 (326)
80 PF03956 DUF340: Membrane prot 20.9 5.5E+02 0.012 22.2 13.2 81 69-153 56-136 (191)
81 PF03817 MadL: Malonate transp 20.3 4.5E+02 0.0098 20.9 7.9 77 16-94 39-117 (125)
No 1
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=6.1e-49 Score=370.02 Aligned_cols=311 Identities=25% Similarity=0.351 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhhHHHHHHHHHHHH
Q 019021 7 VYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPF--KW-NYRCIAADALSKLIIA 83 (347)
Q Consensus 7 ~~~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 83 (347)
++.++++++|+++++++||+++||+|++|||+.+.++++++|+++||++|+++.+.+.+ +. .+........+....+
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSY 82 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999854589999999999999999999999999999987664 22 2333333334555567
Q ss_pred HHHHHHHH-HhCCCchhhHHhHhhhhccccccchhHHHHHHhhcccc---chhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 019021 84 IVLALWAK-CSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMA---VDLVVQFSVIQAIVWLPVLLLVLEIRRAGT 159 (347)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 159 (347)
++++..+| +.|+|++++....+ ++.++|++|+|+|+++++||+++ +.++..+++.+++..++++..+.+..++++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (321)
T TIGR00946 83 ALIWLITKPLFKADYGKLSGFLL-VSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG 161 (321)
T ss_pred HHHHHHHHHHHhcccchhhHHHH-HhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence 78888888 55666666554444 47899999999999999999999 677778888888888998877653221100
Q ss_pred cCCCCccCCcccccccccccCCC-ChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHH
Q 019021 160 TDAGAVHVDKDLEGTINAEASSR-PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGT 238 (347)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~ 238 (347)
+++ .+.++..++.++|.++||+++|+++|++++.+ |+++|+++.++++.+|++++
T Consensus 162 --------------------~~~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~ 217 (321)
T TIGR00946 162 --------------------EGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATT 217 (321)
T ss_pred --------------------cccchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHH
Confidence 011 12223356778999999999999999999999 99999999999999999999
Q ss_pred HHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCch
Q 019021 239 GTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHA 318 (347)
Q Consensus 239 plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~ 318 (347)
|++|+++|++++..+ .+++++..+..++.|+++.|++++++...++++++..+++++++++|+|.+++++|++||.|+
T Consensus 218 plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~ 295 (321)
T TIGR00946 218 PMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV 295 (321)
T ss_pred HHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH
Confidence 999999999998754 345778999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 319 DVLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 319 ~~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
|++++.+++||++|++|+|+|+++++
T Consensus 296 ~~aa~~v~~sT~ls~~tlp~~~~l~~ 321 (321)
T TIGR00946 296 ELASTAVTLSTVLSLISLPLFIILLG 321 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763
No 2
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=1e-47 Score=360.28 Aligned_cols=303 Identities=15% Similarity=0.250 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHHH
Q 019021 9 KVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW--NYRCIAADALSKLIIAIVL 86 (347)
Q Consensus 9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 86 (347)
..++.++|+++++++||++ ||+|+++||+.+.+|++++|+++||++|.++.+.+.++. ++.......++.+..++++
T Consensus 4 ~~~~~ilpif~ii~lG~~~-~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFS-GRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5688999999999999999 568999999999999999999999999999998765432 4445555556666666777
Q ss_pred HHHHH-HhCCCchhhHHhHhhhhccccccchhHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 019021 87 ALWAK-CSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQM---AVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDA 162 (347)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 162 (347)
+...| ..|+|+.++....+. ++++|+||+|+|+++++||++ ++.++..+ ..+++..++++.+..+..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~---- 156 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGA---- 156 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHcccccc----
Confidence 77765 445555454434443 678999999999999999999 45444444 457788899998877543211
Q ss_pred CCccCCcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHH
Q 019021 163 GAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAM 242 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL 242 (347)
.+++.+ .++.+|+.+|||+++|+++|++++.. |+++|+++.++++++|++++|++|
T Consensus 157 ----------------~~~~~~----~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL 212 (314)
T PRK09903 157 ----------------DGKKNS----NLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAV 212 (314)
T ss_pred ----------------ccccch----HHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 001111 24567788999999999999999999 999999999999999999999999
Q ss_pred HHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHH
Q 019021 243 FSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLS 322 (347)
Q Consensus 243 ~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa 322 (347)
+++|++++..+ . + .+++.+...+.|+++.|++++.++..+++|++..+++++++++|+|.+++++|++||.|++.++
T Consensus 213 ~~iG~~L~~~~-~-~-~~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa 289 (314)
T PRK09903 213 FAAGLTLAAHK-F-E-FSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGT 289 (314)
T ss_pred HHHHHHHhhcc-c-c-ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHH
Confidence 99999998864 2 2 3356778889999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 019021 323 TAVIFGMIVSLPLMIAYFAILEF 345 (347)
Q Consensus 323 ~~i~~stlls~~t~~i~~~il~~ 345 (347)
+.+..||++|++|+|+|+++++.
T Consensus 290 ~~v~~sTlls~iTlpl~~~l~~~ 312 (314)
T PRK09903 290 ASLAVSVLGFVVTAPLWIYVSRL 312 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=1.1e-45 Score=345.36 Aligned_cols=305 Identities=20% Similarity=0.377 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc-chhhHHHHHHHHHHHHHH
Q 019021 7 VYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW-NYRCIAADALSKLIIAIV 85 (347)
Q Consensus 7 ~~~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 85 (347)
+..++..++|+++++++||+++ |.+.++++..+.+|++++|+++||++|+++.+.+.+.. ++..+...+.+.++.++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~-r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK-RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999994 58999999999999999999999999999999988765 566666666777777777
Q ss_pred HHHHHHHhCCCchh-hHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 019021 86 LALWAKCSSKGSYC-WSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGA 164 (347)
Q Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 164 (347)
.+.+.|+.++++++ +....+ +++++|++++|+|++...||++++.++++|+..+++..++.+.+.++..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------ 153 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFAL-ASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------ 153 (311)
T ss_pred HHHHHHHHhccchhhHHHHHH-HHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 77777776544444 333344 5789999999999999999999999999999999999999999988765431
Q ss_pred ccCCcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHH
Q 019021 165 VHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFS 244 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~ 244 (347)
++ +..++..|+.++||+++|.++|++++.. |+++|++++++++++|++++|++|++
T Consensus 154 ----------------~~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~ 209 (311)
T COG0679 154 ----------------TN----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIA 209 (311)
T ss_pred ----------------ch----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHH
Confidence 11 2267788999999999999999999999 99999999999999999999999999
Q ss_pred hchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHH
Q 019021 245 MGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTA 324 (347)
Q Consensus 245 lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~ 324 (347)
+|++|+..+ .++.+.+........|+++.|++++...+.++++++...++++++++|+|.+++++|++||.|++.+++.
T Consensus 210 lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~ 288 (311)
T COG0679 210 LGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAAST 288 (311)
T ss_pred Hhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHH
Confidence 999999853 3344556666667779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019021 325 VIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 325 i~~stlls~~t~~i~~~il~ 344 (347)
+.+||++|++++|.|.+.+.
T Consensus 289 i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 289 ILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988764
No 4
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=6e-44 Score=344.35 Aligned_cols=329 Identities=22% Similarity=0.339 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCC-CC-cchhhHHHH-HHHHHHHHHHH
Q 019021 10 VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDP-FK-WNYRCIAAD-ALSKLIIAIVL 86 (347)
Q Consensus 10 ~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~~~ 86 (347)
+++.++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+. ++ .+++.+... .+...+.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999955 7999999999999999999999999999998653 33 344444333 45556666778
Q ss_pred HHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccC---CC
Q 019021 87 ALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTD---AG 163 (347)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~---~~ 163 (347)
+.+.|++|.++.++..... +++++|++++|+|+++++||+++..++.+++..++++.|+++..+.+..+++++. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 159 (385)
T PF03547_consen 81 FLLSRLFRLPKEWRGVFVL-AASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEP 159 (385)
T ss_pred HHHHHhcCCCcccceEEEe-cccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccc
Confidence 8888877666555443333 5789999999999999999999999999999999999999999988765433111 00
Q ss_pred C-----ccCCcc---------------ccccccc-------------------ccCCC----------ChhHHHHHHHHH
Q 019021 164 A-----VHVDKD---------------LEGTINA-------------------EASSR----------PDFWHLMKLVWL 194 (347)
Q Consensus 164 ~-----~~~~~~---------------~~~~~~~-------------------~~~~~----------~~~~~~~~~~~~ 194 (347)
+ +++++| ++.++++ +++++ ...++..++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (385)
T PF03547_consen 160 SSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSIL 239 (385)
T ss_pred cccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHHH
Confidence 0 000000 0000000 00000 012344566778
Q ss_pred HHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021 195 KVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG 274 (347)
Q Consensus 195 ~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~ 274 (347)
+.++||+++|.++|+++++.+......+|+++.+.++++|++++|++|+++|++++..+.....+++.....++.|+++.
T Consensus 240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~ 319 (385)
T PF03547_consen 240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIIL 319 (385)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHH
Confidence 89999999999999999999332233344999999999999999999999999998765333456777777899999999
Q ss_pred HHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 275 PAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF 340 (347)
Q Consensus 275 P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~ 340 (347)
|++++++++.++++++...++++++++|+|.+..++|++||.|++.+++.+++||+++++++|+|+
T Consensus 320 P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 320 PLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999999999995
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.97 E-value=1.2e-31 Score=243.90 Aligned_cols=343 Identities=15% Similarity=0.148 Sum_probs=252.1
Q ss_pred cchhhHHHHHH---HHHHHHHHHHHhhhhhh-hccccChHHhHHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhhHHHH
Q 019021 2 IGWEDVYKVVV---AMVPLYVALMLGYGSVK-WWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHV-DPFKW-NYRCIAAD 75 (347)
Q Consensus 2 ~~~~~~~~~~~---~i~pi~~ii~iG~~~~k-~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~-~~~~~-~~~~~~~~ 75 (347)
-++-++.++.+ .++.++++..+||++++ +-++++++..|.+|+++++++.||++|..+++. ++++. +||++...
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 33444444444 66778999999999985 239999999999999999999999999999975 56664 78888777
Q ss_pred H-HHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhh-------cc------ccchhHHHHHHHHH
Q 019021 76 A-LSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMY-------GQ------MAVDLVVQFSVIQA 141 (347)
Q Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-------G~------~~~~~~~~~~i~~~ 141 (347)
. +.+.++.+++|+..|+.|.+++.+. ....+|+++|.|++.+-++.++. |+ .|+.|+..+.....
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~-fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~ 160 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRG-FIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQ 160 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcC-eEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhh
Confidence 5 6777888999999999887766554 33346899999999999999995 43 25677777777777
Q ss_pred HHHHHHHHHHHhhhh-ccccCCCC--------------ccCCccc----------cccc-ccc-cCCC--ChhHHHHHHH
Q 019021 142 IVWLPVLLLVLEIRR-AGTTDAGA--------------VHVDKDL----------EGTI-NAE-ASSR--PDFWHLMKLV 192 (347)
Q Consensus 142 ~~~~~~~~~l~~~~~-~~~~~~~~--------------~~~~~~~----------~~~~-~~~-~~~~--~~~~~~~~~~ 192 (347)
+..|++++.++.... +.+.+.++ .+.+.|+ |+++ +.. ..++ .+.+....+.
T Consensus 161 il~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~ 240 (408)
T KOG2722|consen 161 ILRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKV 240 (408)
T ss_pred hEEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHh
Confidence 777888876543321 11111111 0111110 0100 000 0011 0111112223
Q ss_pred HHHHhcCchhHHHHHHHHHHhhccc----cCCCCC-hhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHH
Q 019021 193 WLKVAMNPNAYACIFGIAWAFVSNR----WHFEMP-SIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGM 267 (347)
Q Consensus 193 ~~~~~~nP~iia~~~gl~~~~~~~~----~~~~lP-~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~ 267 (347)
..+.+.+||++|.++|+++...++. .|-.=| ..+.+..+.+|+.++|+.++++|..|....+....+.+.++..+
T Consensus 241 ~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigii 320 (408)
T KOG2722|consen 241 ILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGII 320 (408)
T ss_pred hHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEE
Confidence 3345679999999999999998752 122222 58999999999999999999999999887654444556666678
Q ss_pred HHHHHHHHHHHHHHHHH---c---C-CChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 268 VLKFIAGPAAMAIGAIA---M---G-LHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF 340 (347)
Q Consensus 268 ~~rlii~P~i~~~~~~~---~---~-~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~ 340 (347)
..|+++.|.+.+++... + . -||..+.++.++.++|||++...+|+.+|..+++.|..++|++.++.+.+.+|.
T Consensus 321 i~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~ 400 (408)
T KOG2722|consen 321 IGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWS 400 (408)
T ss_pred EeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999987642 2 3 578899999999999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q 019021 341 AILEF 345 (347)
Q Consensus 341 ~il~~ 345 (347)
.++-.
T Consensus 401 ~~f~~ 405 (408)
T KOG2722|consen 401 VFFLW 405 (408)
T ss_pred HHHHH
Confidence 77643
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.18 E-value=3.4e-10 Score=104.82 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=97.0
Q ss_pred HhHHHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHH
Q 019021 235 RAGTGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKE 313 (347)
Q Consensus 235 ~~~~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~ 313 (347)
-....++|+.+|++++..+.. ..++.+......+.|++++|++++++...++.+++....+++.+++|++.++.++++.
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~ 90 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYL 90 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHH
Confidence 344788999999999876521 1234457788889999999999999999899999999999999999999999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 314 YGLHADVLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
+|.|.+.+++.+.+||++|++++|+|..++.
T Consensus 91 ~~gn~~la~~~~~~stlls~vt~Pl~l~~~~ 121 (286)
T TIGR00841 91 LKGDMALSISMTTCSTLLALGMMPLLLYIYA 121 (286)
T ss_pred hCCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=98.74 E-value=4e-07 Score=84.07 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=95.6
Q ss_pred HhHHHHHHHHhchhhhhchh-hhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHH
Q 019021 235 RAGTGTAMFSMGIFMASQEK-LIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKE 313 (347)
Q Consensus 235 ~~~~plaL~~lG~~l~~~~~-~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~ 313 (347)
.....+.+|..|..++.... ...+.||..+...+.-++++|+++++++..+++|++...-+++.+++|.++.+.+++..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l 120 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL 120 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence 45556667777777765431 23357889999999999999999999999999999999999999999999999999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 314 YGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
++.|...+-...+.||+++.++.|++..++
T Consensus 121 AkGnValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 121 AKGNVALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775
No 8
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.70 E-value=3.6e-07 Score=79.35 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=85.7
Q ss_pred HHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHhHHhccChhhHHHHHHHHhC
Q 019021 238 TGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFIAGPAAMAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIFAKEYG 315 (347)
Q Consensus 238 ~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rlii~P~i~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~ 315 (347)
..+.|+.+|.+++..+-. ..++.|......+.+++++|++++++. ..++.+++....+++++++|.+..+..++...|
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~ 83 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG 83 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence 456788888888766521 123456777788999999999999998 788999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 316 LHADVLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 316 ~d~~~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
.|.+.+.+...++|+++.+++|++..++.
T Consensus 84 Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 84 GDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988763
No 9
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.65 E-value=1.5e-06 Score=81.98 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=105.6
Q ss_pred hcCchhHHHHHHHHHHhhccccCCCCChhHHHHHH-HHHHhHHH------HHHHHhchhhhhchh-hhhchhHHHHHHHH
Q 019021 197 AMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSIL-IMSRAGTG------TAMFSMGIFMASQEK-LIACGTSLTIFGMV 268 (347)
Q Consensus 197 ~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~-~l~~~~~p------laL~~lG~~l~~~~~-~~~~~~~~~~~~~~ 268 (347)
+....+.++++|++.... .|+.....-. ...+...| ..|+.+|..++..+. ...+++|.......
T Consensus 8 ~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~ 80 (328)
T TIGR00832 8 LTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLF 80 (328)
T ss_pred HHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHH
Confidence 445566777778887554 3433221111 11222333 456777777755441 22356788999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 269 LKFIAGPAAMAIGAIA-MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 269 ~rlii~P~i~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
..++++|++++++... ++.+++...-+++.+++|.+..+.+++...|.|...+.+...++|+++.+++|.+.+.+
T Consensus 81 ~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll 156 (328)
T TIGR00832 81 INWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLL 156 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 48999999899999999999999999999999999999999999999999999987765
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=98.17 E-value=4.4e-05 Score=71.62 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=108.9
Q ss_pred CchhHHHHHHHHHHhhccccCCCCChhHHHHH--HHHHHhHHHHHHHHhchhhhhchh-hhhchhHHHHHHHHHHHHHHH
Q 019021 199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSI--LIMSRAGTGTAMFSMGIFMASQEK-LIACGTSLTIFGMVLKFIAGP 275 (347)
Q Consensus 199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l--~~l~~~~~plaL~~lG~~l~~~~~-~~~~~~~~~~~~~~~rlii~P 275 (347)
|+.+++.+.++++... .+-|..-...+ +...+..+.+..+.-|.+++..+- ...++||........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888888765 22222222222 245555688889999999976652 223578888888999999999
Q ss_pred HHHHHHHHHcC--CChhHHHHHhHHhccChhhH-HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 276 AAMAIGAIAMG--LHGDVLRVAIIQAALPQSIT-SFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 276 ~i~~~~~~~~~--~~~~~~~~~vl~~a~P~a~~-~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
++++++....+ .+++...-+.+.+++|+.+. +..+++..|.|...+-.....|+++++++.|+|...+
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLL 146 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 99999988763 57788888999999999966 5679999999999999999999999999999998765
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.001 Score=61.71 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHH--HHHHhHHHHHHHH--------hchhhhhchhhhhchhH
Q 019021 192 VWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSIL--IMSRAGTGTAMFS--------MGIFMASQEKLIACGTS 261 (347)
Q Consensus 192 ~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~--~l~~~~~plaL~~--------lG~~l~~~~~~~~~~~~ 261 (347)
.+.|-+.-=+++|+++|+.+ |...|+ +.+.++ ..++...|.+.-. +....+..++ ..++.|
T Consensus 11 ~~dk~l~~wv~l~i~~Gi~l-------G~~~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~-v~k~~k 81 (342)
T COG0798 11 FLDKYLTLWVFLAIAIGILL-------GVHFPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKN-VFKDPK 81 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------Hhcccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHH-HHhcch
Confidence 33343333378899999998 445555 233333 2333333333221 2333333332 234678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 262 LTIFGMVLKFIAGPAAMAIGAIA-MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF 340 (347)
Q Consensus 262 ~~~~~~~~rlii~P~i~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~ 340 (347)
......+...++.|+.++.+++. ++..++.+.-+++....|+-....+.++..+.|.|.++..+.++.++.++..+.+.
T Consensus 82 ~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 82 PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998765 46677888889999999999999999999999999999999999999999998886
Q ss_pred HHH
Q 019021 341 AIL 343 (347)
Q Consensus 341 ~il 343 (347)
+++
T Consensus 162 ~~~ 164 (342)
T COG0798 162 KFF 164 (342)
T ss_pred HHH
Confidence 664
No 12
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=97.16 E-value=0.21 Score=46.51 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=124.8
Q ss_pred HHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHh---ccCCCCCcchhhHHHH-HHHHHHHHHHHHHHHH
Q 019021 16 PLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFT---AHVDPFKWNYRCIAAD-ALSKLIIAIVLALWAK 91 (347)
Q Consensus 16 pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 91 (347)
|..+...+|.+.+. .| -|-+.-+.+.|++--..+=+.=++.- .+.+.++ .+...... .++.++- +.+|.+-|
T Consensus 1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~-~~~~~~~~~~lg~liP-l~~~~iLr 76 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTA-LLLPLLAAVLLGILIP-LIAFPILR 76 (327)
T ss_pred CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHH-HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34456667777642 22 12234455666555555555555532 2222222 12222222 2333333 44454444
Q ss_pred H-hCCCchhhHHhHhhhhccccccchhHHHHHHhhccccch---hHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccC
Q 019021 92 C-SSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVD---LVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHV 167 (347)
Q Consensus 92 ~-~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 167 (347)
. .|-|+.+. ... +.-|+.....-+-...+...++++. |...+........--++..+.+....+++ .+++.+
T Consensus 77 ~~~~l~~~da--aAi-AAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~-~~~~~~ 152 (327)
T PF05982_consen 77 RLGKLDRADA--AAI-AAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQA-AGATAS 152 (327)
T ss_pred HccCCChhhH--HHH-HHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhcccc-ccccCC
Confidence 4 45566554 233 2557777777777777777666554 44444444445545556665543222100 000000
Q ss_pred CcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCC-CCChhHHHHHHHHHHhHHHHHHHHhc
Q 019021 168 DKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHF-EMPSIMEGSILIMSRAGTGTAMFSMG 246 (347)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~-~lP~~i~~~l~~l~~~~~plaL~~lG 246 (347)
+++.+.. ..+++.+ +++.+++.++|+-++..+-|+++.+.-...+. ++-++..+.++ ....+-|+-+|
T Consensus 153 ~~~~~~~---~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G~L~lFLLeMG 221 (327)
T PF05982_consen 153 STRVGAG---SGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----GVLCLFLLEMG 221 (327)
T ss_pred ccccccc---ccccccc----HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----HHHHHHHHHhh
Confidence 0000000 0112333 67888999999999999999999887332222 23344444444 55556666666
Q ss_pred hhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHH----HHHcCCCh
Q 019021 247 IFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG----AIAMGLHG 289 (347)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~----~~~~~~~~ 289 (347)
+.=+++ . +++|+.-+....==+++|++...+ .+..|++.
T Consensus 222 l~A~~r--L--~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 222 LVAARR--L--RDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHHHHh--h--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 654432 2 244444443333345777776544 35567764
No 13
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.02 E-value=0.0074 Score=55.98 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccChHHhHH------HHHHHHHHHhHHHHHHHhccC--CCCCcchhhHHHHHHHHH
Q 019021 9 KVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDA------INRLVCYFTLPLFTVEFTAHV--DPFKWNYRCIAADALSKL 80 (347)
Q Consensus 9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~------ls~lv~~i~lP~lif~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (347)
+++....-+++=+.+|..+ ||+. ++..+. ++.+.+.+. ++..+... ++.+..+.......+...
T Consensus 135 ~i~~~~~~v~vPl~lG~~~-r~~~---p~~~~~~~~~~~~s~~~l~li----v~~~~~~~~~~i~~~~~~~~~~~~ll~~ 206 (286)
T TIGR00841 135 GIGLSLVAVLIPVSIGMLV-KHKL---PQIAKIILKVGLISVFLLSVI----IAVVGGINVENLATIGPLLLLVGILLPL 206 (286)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHh---HHHHHHHHhCchHHHHHHHHH----HHHHHHhhHHHHHHhhHHHHHHHHHHHH
Confidence 3333355667777889988 5321 222222 333322222 22222221 121223444444455567
Q ss_pred HHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q 019021 81 IIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVL 148 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~ 148 (347)
+.+.++|.++|.+|.|+.++....+. ++..|++ +|+++....|+++....+..|.+.+++....++
T Consensus 207 ~~~~~g~~~a~~~~l~~~~~~t~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a 272 (286)
T TIGR00841 207 AGFLLGYLLAKLAGLPWARCRTISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFA 272 (286)
T ss_pred HHHHHHHHHHHHhCCCHhhheeeeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999887665444334453 6779998 999999999987665566666666655544443
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.01 E-value=0.36 Score=46.53 Aligned_cols=308 Identities=15% Similarity=0.081 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHH---HHHHHH
Q 019021 10 VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW---NYRCIAADAL---SKLIIA 83 (347)
Q Consensus 10 ~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~---~~~~~~ 83 (347)
.+..+-|..+++++|.++.- .|+++....+...+.+....+|..++--+.+.|+++. ..+.+...++ +..+..
T Consensus 21 ~f~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555578889999999864 8988555567899999999999999999989887642 2334333333 333344
Q ss_pred HHHHHHHHHhCCCchhhHHh-HhhhhccccccchhHHHHHHhhcccc--chhHHHHHHHHHHHHHHHHHHHHhhhhc---
Q 019021 84 IVLALWAKCSSKGSYCWSIT-SFSLCTLTSSLVVGVPLAKAMYGQMA--VDLVVQFSVIQAIVWLPVLLLVLEIRRA--- 157 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~N~~~~g~Pi~~~l~G~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~--- 157 (347)
.+++...+.. ..++.+.+. .+.++.-+=+.|+ ..+.++ +|.+. .......|.....+++.+...+....+.
T Consensus 100 ~va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~N~-~Av~~a-l~~~~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~ 176 (378)
T PF05684_consen 100 VVAFLLFGGF-LGPEGWKIAGMLAGSYIGGSVNF-VAVAEA-LGVSDSLFAAALAADNVVMALWFAFLLALPPFARKFDR 176 (378)
T ss_pred HHHHHHHhhc-ccchHHHHHHHHHhcccCchhHH-HHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 4444444432 122333333 3433322222232 233333 33332 2333333333322223322222221110
Q ss_pred cccCCCCccCCccccc-ccccccCCCChhH----------------HHHHHHHHHHh------cCchhHHHHHHHHHHhh
Q 019021 158 GTTDAGAVHVDKDLEG-TINAEASSRPDFW----------------HLMKLVWLKVA------MNPNAYACIFGIAWAFV 214 (347)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~------~nP~iia~~~gl~~~~~ 214 (347)
..++.+++.++.++|. +++.+.++++..+ +...+.+.+.. +-+.+....+|++....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~ 256 (378)
T PF05684_consen 177 WTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSFP 256 (378)
T ss_pred ccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcc
Confidence 0011000000000000 0000000111100 00011110000 11223333344443322
Q ss_pred ccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 019021 215 SNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRV 294 (347)
Q Consensus 215 ~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~ 294 (347)
.. -+.+ +.-+.+|....-+-.-.+|+.-+... .. +-.......++=+.++=++.+++..++++|-+...+
T Consensus 257 ----~~--~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~-l~--~ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~v 326 (378)
T PF05684_consen 257 ----PF--RKLL-RGASELGTFLLYLFFAVIGASADISE-LL--DAPSLFLFGFIILAIHLLLMLILGKLFKIDLFELLV 326 (378)
T ss_pred ----ch--hhcC-CchHHHHHHHHHHHHHHHccccCHHH-HH--HhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11 1111 35566777777777777888765443 22 122233334445666667777777888888766644
Q ss_pred HhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 019021 295 AIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLP 334 (347)
Q Consensus 295 ~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~ 334 (347)
.-.-...=|+ ++..+|..+| ++++.-.+.+.++--.+
T Consensus 327 AS~AnIGGpa-TA~a~A~a~~--~~Lv~pgvL~gvlGyai 363 (378)
T PF05684_consen 327 ASNANIGGPA-TAPAVAAAKG--PSLVPPGVLMGVLGYAI 363 (378)
T ss_pred HhhcccCCcc-hHHHHHHhcC--CccHHHHHHHHHHHHHH
Confidence 4433333333 3577888888 66766666666654433
No 15
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=96.52 E-value=0.22 Score=44.07 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=100.7
Q ss_pred HHHhcCchhHHHHHHH-HHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHH
Q 019021 194 LKVAMNPNAYACIFGI-AWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFI 272 (347)
Q Consensus 194 ~~~~~nP~iia~~~gl-~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rli 272 (347)
++.+.||.+++.++-+ ++... |++..++ .+.-+.+....-|. -.+++.-+.++.+..+++++.+...+..=-+
T Consensus 16 ~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y-~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~~ 89 (215)
T PF04172_consen 16 KSPFLNPLLIAIVLIIAFLLLT----GIPYEDY-MQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGSL 89 (215)
T ss_pred CCCcccHHHHHHHHHHHHHHHH----CCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999887744 34444 6665444 34556665555554 7888888888766667788888888888777
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 273 AGPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 273 i~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
+.-.....+++.+|.|++....+.=-+ .+|.| .-.+++.|.+++.++..+.+|=++....=|.+.-.+
T Consensus 90 ~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiA---i~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 90 VSIFSAVLLARLLGLSPEIILSLAPKSVTTPIA---IEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHH---HHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 887888888889999988776555544 34544 456789999999999999998888776666554443
No 16
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=96.38 E-value=0.28 Score=43.68 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=100.0
Q ss_pred HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021 194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA 273 (347)
Q Consensus 194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 273 (347)
|+.+.||.+++.++-+.+-.. .|++..++ .+.-+.+.....| +-.+++.-++++.+..++.|+.+...+.+=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999887766655443 25555443 4445555544444 456677788777666677888888888888777
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
.-.....++..+|.|++....+.=-+ .+|. +.-.+++.|.+++.++..+.++=++....-|..+-.+
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPI---Am~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASMLPQAATTAI---ALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhHhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777888889999998766555444 2343 4567899999999999999999888877776665544
No 17
>PRK10711 hypothetical protein; Provisional
Probab=96.34 E-value=0.22 Score=44.34 Aligned_cols=142 Identities=12% Similarity=0.053 Sum_probs=102.5
Q ss_pred HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021 194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA 273 (347)
Q Consensus 194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 273 (347)
++.+.||.+++.++-+.+-.. .|++..++ .+.-+.+.....| +-.+++.-++++.+..++.++.+...+.+=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999887665555443 25555444 4444555555544 456777888877666777888888888888888
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
.-...+.++..+|.|++....+.=-+ .+|.| .-.+++.|.+++.++..+.++=++....-|..+-.+
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA---m~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAASILPKSVTTPIA---MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH---HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888899999998876666555 34444 456799999999999999999888877777665554
No 18
>COG3329 Predicted permease [General function prediction only]
Probab=96.25 E-value=0.95 Score=41.68 Aligned_cols=230 Identities=15% Similarity=0.095 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHH
Q 019021 14 MVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALWA 90 (347)
Q Consensus 14 i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (347)
.-|.++....|.+..- .| -+-+.-+.+.+......+-|.=|+.-.+.+.+.. ........++++++.+...+...
T Consensus 16 ~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~ 93 (372)
T COG3329 16 LSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLR 93 (372)
T ss_pred ccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377777888888642 22 1223334455544444555555554333332222 12222333455555555555555
Q ss_pred HHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchh---HHHHHHHHHHHHHHHHHHHHhh---hhccccCCC-
Q 019021 91 KCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDL---VVQFSVIQAIVWLPVLLLVLEI---RRAGTTDAG- 163 (347)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~---~~~~~i~~~~~~~~~~~~l~~~---~~~~~~~~~- 163 (347)
|+.+-|+.++. .. +..|+...-.-+.-+.+..-+.+..| .........+...-.+..+.+. .+.+..+.+
T Consensus 94 kl~~vdtvdaa--A~-ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~ 170 (372)
T COG3329 94 KLPKVDTVDAA--AT-AGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEA 170 (372)
T ss_pred HccccchHHHH--HH-HhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhcccccccccc
Confidence 65566665543 22 24567766666666667766655543 2222222222222223333221 111100100
Q ss_pred --------Cc-cCCccccccccc--ccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHH
Q 019021 164 --------AV-HVDKDLEGTINA--EASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILI 232 (347)
Q Consensus 164 --------~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~ 232 (347)
.| .+++|-+.+-|+ .++...+.+-..|+.+++.+.||-+...+.|+++.+. .|-+=-+.+.++.+-
T Consensus 171 ~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~ 247 (372)
T COG3329 171 HSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDP 247 (372)
T ss_pred ccccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHH
Confidence 01 111221100000 0000000112256788889999999999999999987 233333455666777
Q ss_pred HHHhHHHHHHHHhchhhhh
Q 019021 233 MSRAGTGTAMFSMGIFMAS 251 (347)
Q Consensus 233 l~~~~~plaL~~lG~~l~~ 251 (347)
+=+....+-|+.+|+.-..
T Consensus 248 lFqGvL~lflL~MGm~A~r 266 (372)
T COG3329 248 LFQGVLCLFLLDMGMTAGR 266 (372)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 7778888999999997643
No 19
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=96.19 E-value=0.35 Score=43.00 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=97.7
Q ss_pred HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021 194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA 273 (347)
Q Consensus 194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 273 (347)
++.+.||.+++.++-+.+-.. .|++..++ .+.-+.+.....| +..+++.-+.++.+..++.++.+...+..=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556779999988766655443 25555444 4455555444333 456777778777666677788888777777777
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
.-.....+++.+|.|++....+.=-+ .+|. +.-.+++.|.+++.++..+.+|=++....-|..+-.+
T Consensus 101 ~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpi---Am~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIASLLPKSVTTPI---AMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHHHhhhHHhhHHH---HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777778888999987765554444 2343 3457889999999999999998888777666555443
No 20
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=96.05 E-value=0.41 Score=42.28 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=100.2
Q ss_pred HHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHH
Q 019021 193 WLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFI 272 (347)
Q Consensus 193 ~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rli 272 (347)
.|+.+.||.+++.++.+.+-.. .|++..+ ..+.-+.+...--| +-.+++.=+.++.+..++.|+.+...+++--+
T Consensus 28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~ 102 (230)
T COG1346 28 TKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV 102 (230)
T ss_pred cCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999998887766554 2555433 33344445555555 66777888887766667788888888777777
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhHHhc-cChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 273 AGPAAMAIGAIAMGLHGDVLRVAIIQAA-LPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 273 i~P~i~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
+.-.....+...++.|++....+.=-+. +|. +.-.+++.|.-++.++-.+.++=++.-+.-|...-.+
T Consensus 103 ~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpi---Am~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 103 VAIISGVLLAKLFGLSPELILSLLPKSVTTPI---AMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcccccccHH---HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7767777778889999987765544442 333 3456889999999999999988888777766665544
No 21
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.66 E-value=0.13 Score=47.94 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhhhhhccccChHHhH---HHHHHHHHHHhHHHHHHHhccCCCCC--cchhhHHHHHHHHHHHHHHHHHHH
Q 019021 16 PLYVALMLGYGSVKWWRIFTLEQCD---AINRLVCYFTLPLFTVEFTAHVDPFK--WNYRCIAADALSKLIIAIVLALWA 90 (347)
Q Consensus 16 pi~~ii~iG~~~~k~~~~~~~~~~~---~ls~lv~~i~lP~lif~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (347)
.+++=+.+|-++ |+ +++ +..+ ..-..+-...+=+.+...++....+. .....+....+...+++..+|..+
T Consensus 169 ~vllP~~LG~~~-r~--~~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~a 244 (319)
T COG0385 169 QVLLPFVLGQLL-RP--LLP-KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGA 244 (319)
T ss_pred HHHHHHHHHHHH-HH--HHH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677776 32 222 2222 23333444445555555555432221 123333444456677889999999
Q ss_pred HHhCCCchhhHHhHhhhhccccccchhHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHH
Q 019021 91 KCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYG-QMAVDLVVQFSVIQAIVWLPVLL 149 (347)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G-~~~~~~~~~~~i~~~~~~~~~~~ 149 (347)
|+.+.|+.++....++ .+..|.+ .|.|+....+| ...+.+..+|...|++..--++-
T Consensus 245 r~~g~~~a~~iti~ie-~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~ 302 (319)
T COG0385 245 RLLGFDKADEITIAIE-GGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG 302 (319)
T ss_pred HHhCCChhheeeEEEe-eccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 9998887666534564 5567776 69999999666 34445677777777665443433
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.12 E-value=0.56 Score=43.88 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=80.3
Q ss_pred hcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHH
Q 019021 197 AMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPA 276 (347)
Q Consensus 197 ~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~ 276 (347)
-.+++++|.++|++++-. -...|+...+.++.-++-....+...+|..+.... .....++....... =....=.
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~~-~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIIII-VVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHHH-HHHHHHH
Confidence 357889999999999831 25788999999999999999999999999998765 22233332222222 2222222
Q ss_pred HHHHHH-HHcCCChhHHHHHhHHhccChhhHHHHH--HHHhCCchhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 019021 277 AMAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIF--AKEYGLHADV---LSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 277 i~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~--a~~~~~d~~~---aa~~i~~stlls~~t~~i~~~il 343 (347)
+.+.+. ..+++|++.... +-+.+=..-.+.+. +..-+.++|+ +.+.+.+-..++++..|.....+
T Consensus 99 ~~~~lg~r~~~l~~~~~~L--ia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAIL--IAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHHHHHhCCCHHHHHH--HHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 233344 667888765422 22222221122222 2233334443 34444444556666677665544
No 23
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.93 E-value=3.9 Score=38.29 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhccccChHHhHHHHHHHHHHHhHHHHHHHhc--cCCCCCcchhhHHHHHHHHHHHHHHH
Q 019021 10 VVVAMVPLYVALMLGYGSV-KWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA--HVDPFKWNYRCIAADALSKLIIAIVL 86 (347)
Q Consensus 10 ~~~~i~pi~~ii~iG~~~~-k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (347)
++..+.-+...+.++|+++ |+.|+ |+ +...+-.-=.-++=.+.+...-. +.+.++.....-.....+.+.+ ++.
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~l-~~-~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam-~~~ 162 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFGL-DR-KLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAM-FLY 162 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CH-HHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHH-HHH
Confidence 4455556777888899988 66665 33 34444444455555555544332 3333332222222222222222 222
Q ss_pred HHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 019021 87 ALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVH 166 (347)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 166 (347)
-.+.+....++.+ + -.+.+..--|++ ..--....+|++....+...-...+++.-++...+.-....++
T Consensus 163 P~l~~~l~l~~~~-~-G~w~G~sIh~~a--qVvaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~------- 231 (305)
T PF03601_consen 163 PLLGHALGLSPQQ-F-GAWAGGSIHDTA--QVVAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQ------- 231 (305)
T ss_pred HHHHHHhCCCHHH-H-HHHhhhhhcccc--hHhhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 3344555555333 2 223334446665 2333445678888778888877777776666655432222110
Q ss_pred CCcccccccccccCCCChhHHHHHHHHHHHhcCch-hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHh
Q 019021 167 VDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPN-AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSM 245 (347)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~-iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~l 245 (347)
++ +++.+ + + ..-|. +++.++..+++-. ..+|+.+.+.++.+++...-++|..+
T Consensus 232 --~~---------~~~~~-----~----~-~~~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aai 285 (305)
T PF03601_consen 232 --EK---------SSGKS-----K----K-VSFPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAI 285 (305)
T ss_pred --cc---------ccccc-----C----c-cCcCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00111 0 1 12444 4455555555443 56788999999999999999999999
Q ss_pred chhhhhchhhhhchhHH
Q 019021 246 GIFMASQEKLIACGTSL 262 (347)
Q Consensus 246 G~~l~~~~~~~~~~~~~ 262 (347)
|.+.+..+ ..+..+|.
T Consensus 286 Gl~~~~~~-l~~~G~kp 301 (305)
T PF03601_consen 286 GLSTNFKD-LKQVGWKP 301 (305)
T ss_pred hhcCcHHH-HHhcCccc
Confidence 99987765 34444443
No 24
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=93.36 E-value=1.4 Score=41.36 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccccChH--HhHHHHHHHHHHHhHHHHHHHhccC---CC-CCcchhhHHHH-HH---HHHH
Q 019021 12 VAMVPLYVALMLGYGSVKWWRIFTLE--QCDAINRLVCYFTLPLFTVEFTAHV---DP-FKWNYRCIAAD-AL---SKLI 81 (347)
Q Consensus 12 ~~i~pi~~ii~iG~~~~k~~~~~~~~--~~~~ls~lv~~i~lP~lif~~~~~~---~~-~~~~~~~~~~~-~~---~~~~ 81 (347)
+....+++=..+|-++ ||+ +++. ..|...+.+-...+-.+++.++.+. +. ++.+...+... .. -...
T Consensus 162 ~L~~~vllP~~~Gq~~-r~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLL-RRW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV 238 (313)
T ss_pred HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence 3444455566678887 422 2221 2344566667777777777777654 21 12222212221 11 1222
Q ss_pred HHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhcccc-----chhHHHHHHHHHH
Q 019021 82 IAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMA-----VDLVVQFSVIQAI 142 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~-----~~~~~~~~i~~~~ 142 (347)
.+.++|..+|..+.+++|+....| |+-..+.-+|+|++..+|+++. ..+..+|...|.+
T Consensus 239 ~l~~~~~~~r~~~~~~~d~iA~~F--~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~ 302 (313)
T PF13593_consen 239 VLVLGWLAARLLGFSRPDRIAVLF--CGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF 302 (313)
T ss_pred HHHHHHHHHhhcCCChhhEEEEEE--EcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence 345667888887777766542344 3447777899999999998853 2345556555533
No 25
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=92.33 E-value=12 Score=36.51 Aligned_cols=268 Identities=11% Similarity=0.027 Sum_probs=131.2
Q ss_pred HHHHHHHhhhhhhhccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHH
Q 019021 17 LYVALMLGYGSVKWWRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLAL 88 (347)
Q Consensus 17 i~~ii~iG~~~~k~~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 88 (347)
++++..--++. - .++++|+..+..+++. .|+..-+++-.++...|.+-+ -.++++..+.+.+...+++..
T Consensus 63 il~~f~ps~Lv-~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~l 140 (414)
T PF03390_consen 63 ILCIFVPSALV-Y-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGL 140 (414)
T ss_pred HHHHHHHHHHH-H-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3 7999999999999887 678889999999988776532 235555555666666666666
Q ss_pred HHHHhCCCchhhHHhH-h-hhhccccccchhHHHHH-HhhccccchhH---HHHHHHHHHHHHHHHHHHHhhhhccc-cC
Q 019021 89 WAKCSSKGSYCWSITS-F-SLCTLTSSLVVGVPLAK-AMYGQMAVDLV---VQFSVIQAIVWLPVLLLVLEIRRAGT-TD 161 (347)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~-~~~~~~N~~~~g~Pi~~-~l~G~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~-~~ 161 (347)
...+++.+..+..... + ..++-.+.|.+++...+ ...|.+.-.+. +......|++.--.+ -++.+-.+++ +-
T Consensus 141 vG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~a-glL~~lg~~~P~l 219 (414)
T PF03390_consen 141 VGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFA-GLLNKLGKKKPKL 219 (414)
T ss_pred HHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCC
Confidence 6677666655532111 1 12333456655444443 33455443332 222222222211111 1112111111 11
Q ss_pred CCCc---cCCcccccccccccCCCChhHH------------HHHHHHHHHh-cCchhHHHHHHHHHHhhccccCCCCChh
Q 019021 162 AGAV---HVDKDLEGTINAEASSRPDFWH------------LMKLVWLKVA-MNPNAYACIFGIAWAFVSNRWHFEMPSI 225 (347)
Q Consensus 162 ~~~~---~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~nP~iia~~~gl~~~~~~~~~~~~lP~~ 225 (347)
.+|. +.++|+|.+ +++++++.+..+ .....+.+.+ ..++.+-+++..+++.+ ++ +|+.
T Consensus 220 tGnG~L~~~~~~~~~~-~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~ 293 (414)
T PF03390_consen 220 TGNGQLLKGGDDEEEE-AKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPES 293 (414)
T ss_pred CCCceEEeCCcccccc-ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHH
Confidence 1110 111111111 111111222111 1122233333 25566777777777776 43 5655
Q ss_pred H----HHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Q 019021 226 M----EGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLR 293 (347)
Q Consensus 226 i----~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~ 293 (347)
+ .+.-+...+..++..|+.+|.....-+.....-.......++.-.+..-+....+.+++|+-|.+..
T Consensus 294 ~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA 365 (414)
T PF03390_consen 294 LEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA 365 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 5 4556677788899999999998432221221112222222333333333344445667787665543
No 26
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=91.85 E-value=3.9 Score=38.06 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhccccCC-C-CChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHH
Q 019021 202 AYACIFGIAWAFVSNRWHF-E-MPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMA 279 (347)
Q Consensus 202 iia~~~gl~~~~~~~~~~~-~-lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~ 279 (347)
++=.++|.+++-+-+ +. + +-+ ..+.+-.=+.....+-+++.|.+++... .....|+-......|+++.-++.+
T Consensus 16 vVPLllgalinTf~P--~~l~~iG~-fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl 90 (314)
T PF03812_consen 16 VVPLLLGALINTFFP--NALEIIGG-FTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGL 90 (314)
T ss_pred HHHHHHHHHHHhcCC--ChhhccCc-HHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 455666777765411 11 1 222 2233323455667778899999998764 345677888888999999999999
Q ss_pred HHHHHcCCChh------HHHHHhHHhccChhhHHHHH--HHHhCCchhHHHHHHHHHHHHHHHHHH
Q 019021 280 IGAIAMGLHGD------VLRVAIIQAALPQSITSFIF--AKEYGLHADVLSTAVIFGMIVSLPLMI 337 (347)
Q Consensus 280 ~~~~~~~~~~~------~~~~~vl~~a~P~a~~~~i~--a~~~~~d~~~aa~~i~~stlls~~t~~ 337 (347)
.+.+++|.++. -...+.+.+++-....+... ..+||-++| .++. .+..+.+-|.++
T Consensus 91 ~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~-~i~sl~~GPf~t 154 (314)
T PF03812_consen 91 LVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAF-SILSLNDGPFFT 154 (314)
T ss_pred HHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHH-HHHHhhhhHHHH
Confidence 99999988763 45667777777665555444 458884444 4333 333444444443
No 27
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.67 E-value=9 Score=32.00 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=64.6
Q ss_pred HHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHH----H
Q 019021 205 CIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMA----I 280 (347)
Q Consensus 205 ~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~----~ 280 (347)
++.+.+++... ..+.+.|++..+.-+.+-+ ..+|.+++... .+..++.+.....=.+..-.+.. .
T Consensus 28 mi~~~~~~~~~-~~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~---l~~~~~~~~~~l~~~~~~l~~~~~~~~~ 96 (156)
T TIGR03082 28 LLAGAVLSLAG-GLEITLPPWLLALAQVVIG-------ILIGSRFTREV---LAELKRLWPAALLSTVLLLALSALLAWL 96 (156)
T ss_pred HHHHHHHHhcC-CccCCCCHHHHHHHHHHHH-------HHHHccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455441 0134678776665554333 23455554332 12223333322222222222222 2
Q ss_pred HHHHcCCChhHHHHHhHHhccChhhHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 281 GAIAMGLHGDVLRVAIIQAALPQSITS-FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF 340 (347)
Q Consensus 281 ~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~ 340 (347)
+.+..+.|... .+.+.+|-+... ..+|+++|.|+..++..-..=.++-+.+.|.+.
T Consensus 97 l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~ 153 (156)
T TIGR03082 97 LARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLA 153 (156)
T ss_pred HHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555543 357889988884 567899999999888777666666666666654
No 28
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.63 E-value=18 Score=37.49 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=64.7
Q ss_pred HhcCchhHHHHH-HHHHHhhccccCCCC-ChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021 196 VAMNPNAYACIF-GIAWAFVSNRWHFEM-PSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA 273 (347)
Q Consensus 196 ~~~nP~iia~~~-gl~~~~~~~~~~~~l-P~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii 273 (347)
-++.|.+++-++ |++++.. +..+ ++ .+.++.++...+.+-||.+|..++..+ . ++..+..+.....-+++
T Consensus 26 rl~lp~vlgyilaGillGP~----~lg~i~~--~~~i~~laelGvv~LlF~iGLEl~~~~-l-~~~~~~~~~~g~~qv~~ 97 (621)
T PRK03562 26 RLGLGSVLGYLIAGCIIGPW----GLRLVTD--VESILHFAEFGVVLMLFVIGLELDPQR-L-WKLRRSIFGGGALQMVA 97 (621)
T ss_pred HhCCChHHHHHHHHHHhCcc----cccCCCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH-H-HHHHHHHHHHHHHHHHH
Confidence 368888888755 6776543 3322 22 245788999999999999999987664 2 33444544444444433
Q ss_pred HHHHHHHHHHHcCCChhHHH-HHhHHhccChhhHHHHHHHH
Q 019021 274 GPAAMAIGAIAMGLHGDVLR-VAIIQAALPQSITSFIFAKE 313 (347)
Q Consensus 274 ~P~i~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~ 313 (347)
.-.+...+++.+|.+..... .....+.+.+|+..-++.++
T Consensus 98 ~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 98 CGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333445566676654322 23334445566665555554
No 29
>COG2855 Predicted membrane protein [Function unknown]
Probab=89.57 E-value=4 Score=38.41 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=78.1
Q ss_pred cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHH
Q 019021 198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA 277 (347)
Q Consensus 198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 277 (347)
..|+++|+++|++++.. .+.|+-....++.-++..-..+...+|.++....- .....+ .......-+...=++
T Consensus 37 l~al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i-~~~G~~-~v~~~~~~l~~t~~~ 109 (334)
T COG2855 37 LSALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDI-ADVGGS-GVLIIAITLSSTFLF 109 (334)
T ss_pred chHHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHH-HHcCcc-HHHHHHHHHHHHHHH
Confidence 35899999999999843 46677788889999999999999999999987652 222222 122222222233333
Q ss_pred HHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHH--HhCCchhHHHHHHHHHHHHHHHHHHH
Q 019021 278 MAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAK--EYGLHADVLSTAVIFGMIVSLPLMIA 338 (347)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~--~~~~d~~~aa~~i~~stlls~~t~~i 338 (347)
++.....+++|+.... .+-+.+-..-.+.+.|. .-+.|+|+.+..+..-++++...+.+
T Consensus 110 ~~~lg~~lgld~~~a~--Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ll 170 (334)
T COG2855 110 AYFLGKLLGLDKKLAL--LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLL 170 (334)
T ss_pred HHHHHHHhCCCHHHHH--HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHH
Confidence 4444556788876542 22222333333333333 44556666665555555555444433
No 30
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=89.21 E-value=2.5 Score=40.11 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=63.8
Q ss_pred HHHHHHHhhhhhhhccccChHHhH---HHHHHHHHHHhHHHHH-HHhccCCCCCc----chhhHHHHHHHHHHHHHHHHH
Q 019021 17 LYVALMLGYGSVKWWRIFTLEQCD---AINRLVCYFTLPLFTV-EFTAHVDPFKW----NYRCIAADALSKLIIAIVLAL 88 (347)
Q Consensus 17 i~~ii~iG~~~~k~~~~~~~~~~~---~ls~lv~~i~lP~lif-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 88 (347)
...++.+|.++ |..|+++++..+ ...+++..-..+.++. ..+..+++++. ++..+.....+.+...+.+++
T Consensus 207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55678888888 779999987544 5666666666666655 46666777652 244444444555555677888
Q ss_pred HHHHhCCCchhhHHh-Hhhhhccccccch
Q 019021 89 WAKCSSKGSYCWSIT-SFSLCTLTSSLVV 116 (347)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~N~~~~ 116 (347)
..|+++--+.|..++ .+|.+..+-+|.+
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDv 314 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDV 314 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCce
Confidence 899987666666544 3554555555554
No 31
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=88.63 E-value=0.73 Score=44.02 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=74.2
Q ss_pred HHHHHHHhchhhhhchhhhhchh---HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhh-HHHHHHHH
Q 019021 238 TGTAMFSMGIFMASQEKLIACGT---SLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSI-TSFIFAKE 313 (347)
Q Consensus 238 ~plaL~~lG~~l~~~~~~~~~~~---~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~-~~~i~a~~ 313 (347)
.-.-++.+|..++.+.. ++.+ +......+.+++++|+..+.....+.++........+.++.+++. .++..+..
T Consensus 119 l~~~~ls~g~~~~~~~~--~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~ 196 (371)
T KOG2718|consen 119 LLSNMLSFGIKLDMDLF--AGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKR 196 (371)
T ss_pred HHHHHHHHhcCccHHHH--hhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeec
Confidence 34567788888776542 2222 234445666999999999888766666666644555555555554 45555555
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 314 YGLHADVLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
-+.|...+..+...||+.+++++|+|...+.
T Consensus 197 ~~g~v~lsilmT~~stv~avi~~pl~s~~l~ 227 (371)
T KOG2718|consen 197 LPGDVTLSILMTTISTVLAVILTPLLSILLG 227 (371)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5888888899999999999999999988764
No 32
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.33 E-value=24 Score=35.96 Aligned_cols=137 Identities=15% Similarity=0.067 Sum_probs=83.3
Q ss_pred CchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHH
Q 019021 199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAM 278 (347)
Q Consensus 199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 278 (347)
++.+-|.+.|++++-. +..+.+.+-...+.+...|+--+.+|++++... . ...+......++.+++.-++.+
T Consensus 249 s~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~-l-~~~~~~~~~~~~~~~v~K~~~~ 320 (558)
T PRK10669 249 SFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI-L-IQQPLAVLATLAIIVFGKSLAA 320 (558)
T ss_pred cHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665421 222333333334567789999999999987653 1 1233334445556666666766
Q ss_pred HHHHHHcCCChh-HHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 279 AIGAIAMGLHGD-VLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
+..+...+.+.. .....+.++ -...+.....++.+.|.=++...+.+...++++....|.+....
T Consensus 321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666776543 333333333 35666666666667776556666678888888888888776543
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=88.22 E-value=3.2 Score=38.71 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 202 AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG 281 (347)
Q Consensus 202 iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~ 281 (347)
++=.++|.+++-+-+. -.++-++-...++.=+.....+-+++.|.+++... .....|+-......|+++.-++.+.+
T Consensus 16 ~vPl~lga~inTf~P~-~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~ 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQ-ALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLV 92 (312)
T ss_pred HHHHHHHHHHHhccCc-chhhCcccHHHHhcChHHHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3345566666654110 12333343444444455667778999999998754 23466777777889999999999999
Q ss_pred HHHcCCChh-HHHHHhHHhccChhhHHHHH---HHHhCCchhHH
Q 019021 282 AIAMGLHGD-VLRVAIIQAALPQSITSFIF---AKEYGLHADVL 321 (347)
Q Consensus 282 ~~~~~~~~~-~~~~~vl~~a~P~a~~~~i~---a~~~~~d~~~a 321 (347)
..++|.|+. -...+.+.+++=- .|..+| ..+||-++|..
T Consensus 93 ~~~~g~~g~~Gls~laiiaa~~~-~Ng~ly~al~~~yG~~~d~g 135 (312)
T PRK12460 93 GKFFGAEGIFGLSGLAIVAAMSN-SNGGLYAALMGEFGDERDVG 135 (312)
T ss_pred HHHcCcccccchHHHHHHHHHhc-CcHHHHHHHHHHcCCHhhhh
Confidence 999998874 3555666666643 444445 67999544433
No 34
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.57 E-value=37 Score=34.98 Aligned_cols=136 Identities=14% Similarity=0.031 Sum_probs=87.8
Q ss_pred CchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHH
Q 019021 199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAM 278 (347)
Q Consensus 199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 278 (347)
++.+-|.+.|+++.- -+....+.+-++.+.+...|+-.+.+|++++... . ...+......++..++.-++.+
T Consensus 238 s~~LGAFlaGl~l~~------s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~-l-~~~~~~il~~~~~~l~~K~~~~ 309 (601)
T PRK03659 238 SMALGTFIAGVLLAE------SEYRHELEIAIEPFKGLLLGLFFISVGMALNLGV-L-YTHLLWVLISVVVLVAVKGLVL 309 (601)
T ss_pred cHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH-H-HHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555542 2233456667777788999999999999987653 2 2345555555666777777778
Q ss_pred HHHHHHcCCChhHH-HHHhH-HhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 279 AIGAIAMGLHGDVL-RVAII-QAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 279 ~~~~~~~~~~~~~~-~~~vl-~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
+..+...+.+.... ..... ...-.-+......+.++|.=++...+.+...+++|....|+....
T Consensus 310 ~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 310 YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788876433 33333 334455555555677777655555566677778888888877654
No 35
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=87.40 E-value=9.2 Score=36.29 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=76.1
Q ss_pred cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHH
Q 019021 198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA 277 (347)
Q Consensus 198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 277 (347)
.++.++|+++|++++-. ...+.|+.....++.-++-..-.+...+|.+++... .....++..... ..=....=.+
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~-~~~v~~~~~~ 105 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVAD-TLILTSTFFL 105 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHH-HHHHHHHHHH
Confidence 57788999999998643 012466777788888888899999999999998765 222222222111 1111111111
Q ss_pred HHHHH-HHcCCChhHHHHHhHHhccChhhHHHHHHH--HhCCchh---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 278 MAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIFAK--EYGLHAD---VLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~--~~~~d~~---~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
...+. ..+++|++.. ..+-+.+=..-.+.+.|. .-+.|+| .+.+.+.+-..++++..|.....++
T Consensus 106 ~~~~g~k~l~l~~~~~--~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 106 TVFLGSSRLKLDKQMS--ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHHHHHhCCChhHH--HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 22233 4578876654 222222222222333322 2233333 4445555555567777777765553
No 36
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=86.64 E-value=30 Score=32.94 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=64.6
Q ss_pred ccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH
Q 019021 31 WRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSI 102 (347)
Q Consensus 31 ~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (347)
.|+++|+..+..+++. .|+.+-|++-.++...|.+-+ -..+++..+.+.....+++.....+++.+..+...
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~ 85 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM 85 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence 5899999999998864 578899999999988776532 23455555556555556666666666665544321
Q ss_pred ---hHhhhhccccccchhHHHHHH-hhccccchh
Q 019021 103 ---TSFSLCTLTSSLVVGVPLAKA-MYGQMAVDL 132 (347)
Q Consensus 103 ---~~~~~~~~~N~~~~g~Pi~~~-l~G~~~~~~ 132 (347)
.-.+ ++-.+.|.+++...++ ..|++.-.+
T Consensus 86 ~i~lPIm-~GG~GaGavPLS~~Y~~~~g~~~~~~ 118 (347)
T TIGR00783 86 YIVMPIM-AGGVGAGIVPLSIIYSAITGRSSEEI 118 (347)
T ss_pred eeeehhc-CCCcccchhhHHHHHHHHhCCCHHHH
Confidence 1122 3445577666666664 567665433
No 37
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=84.77 E-value=18 Score=34.17 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhc-cccchhHH
Q 019021 77 LSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYG-QMAVDLVV 134 (347)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G-~~~~~~~~ 134 (347)
+-...++.++++.+|..+.+-++..-.+| ++-+|..-++++++.++|| +++.+.+.
T Consensus 255 iy~~~~~~i~~~i~k~lgl~y~~~~~~~f--t~aSNnfeLAiAvAi~lfG~~s~aA~a~ 311 (342)
T COG0798 255 IYFLLMFFISYFIAKALGLPYEDAAALVF--TGASNNFELAIAVAIALFGLTSGAALAT 311 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhhceee--eeccccHHHHHHHHHHhcCccccchhhh
Confidence 45566778889999987765444332445 4568888899999999999 55544433
No 38
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=82.61 E-value=55 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHhcCchhHHHHHHHHHHhhccccCC-----CCChhHHHHHH
Q 019021 192 VWLKVAMNPNAYACIFGIAWAFVSNRWHF-----EMPSIMEGSIL 231 (347)
Q Consensus 192 ~~~~~~~nP~iia~~~gl~~~~~~~~~~~-----~lP~~i~~~l~ 231 (347)
.+|+++++|++||+.++-..... +. ..|.++.+.++
T Consensus 250 P~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y~PtY~~~VL~ 290 (466)
T KOG2532|consen 250 PYKAILTSPPVWAIWISAFGGNW----GFYLLLTYLPTYLKEVLG 290 (466)
T ss_pred CHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHhC
Confidence 57889999999999998877655 33 35777765554
No 39
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.43 E-value=49 Score=34.07 Aligned_cols=110 Identities=14% Similarity=0.018 Sum_probs=61.6
Q ss_pred hcCchhHHHHH-HHHHHhhccccCCCC-ChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021 197 AMNPNAYACIF-GIAWAFVSNRWHFEM-PSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG 274 (347)
Q Consensus 197 ~~nP~iia~~~-gl~~~~~~~~~~~~l-P~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~ 274 (347)
++-|.+++.++ |++++.. +..+ ++ .+.+..++.....+-||.+|..++..+ . ++..+........-+++.
T Consensus 27 l~~p~ilg~ilaGillGP~----~lg~i~~--~~~i~~laelGvv~LLF~iGLel~~~~-l-~~~~~~~~~~g~~~v~~t 98 (601)
T PRK03659 27 LGIGAVLGYLLAGIAIGPW----GLGFISD--VDEILHFSELGVVFLMFIIGLELNPSK-L-WQLRRSIFGVGAAQVLLS 98 (601)
T ss_pred hCCChHHHHHHHHHHhccc----cccCCCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH-H-HHHHHHHHHHHHHHHHHH
Confidence 67888887754 6666543 2221 22 235678899999999999999988764 2 333444444444443332
Q ss_pred HHHHHHHHHHcCCChhHHH-HHhHHhccChhhHHHHHHHHh
Q 019021 275 PAAMAIGAIAMGLHGDVLR-VAIIQAALPQSITSFIFAKEY 314 (347)
Q Consensus 275 P~i~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~~ 314 (347)
-++...+.+.++.+..... ..+..+.+.+|+..-++.++-
T Consensus 99 ~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 99 AAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 2233334445566643322 223334456666655555543
No 40
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=80.52 E-value=56 Score=31.42 Aligned_cols=80 Identities=11% Similarity=-0.024 Sum_probs=51.0
Q ss_pred HHHHHHhhhhhhhccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHH
Q 019021 18 YVALMLGYGSVKWWRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALW 89 (347)
Q Consensus 18 ~~ii~iG~~~~k~~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 89 (347)
+.+...-|+. - .++++++..+..+.+. .|+.++|++--++...+.+-+ ....++..+++.......+.+.
T Consensus 81 l~~fvaa~~v-~-~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lV 158 (438)
T COG3493 81 LALFVAAYLV-F-YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILV 158 (438)
T ss_pred HHHHHHHHHH-H-hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444443 3 6889999999998885 689999999999988775432 1234444444444444555555
Q ss_pred HHHhCCCchh
Q 019021 90 AKCSSKGSYC 99 (347)
Q Consensus 90 ~~~~~~~~~~ 99 (347)
.-.++.+.+|
T Consensus 159 G~~~G~~~~d 168 (438)
T COG3493 159 GLLFGLSFQD 168 (438)
T ss_pred HHHhCCChHH
Confidence 5556655444
No 41
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=78.69 E-value=6.5 Score=36.48 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred HHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-----h-HHHHHhHHhccChhhH
Q 019021 233 MSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHG-----D-VLRVAIIQAALPQSIT 306 (347)
Q Consensus 233 l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~-----~-~~~~~vl~~a~P~a~~ 306 (347)
=+.....+-+++.|.+++... .....|+-......|+++.-++.+.+..++|.|+ . -...+.+.+++=- .|
T Consensus 46 G~~~il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~n-sN 122 (314)
T TIGR00793 46 GTVPILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDM-TN 122 (314)
T ss_pred CcHHHHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhC-Cc
Confidence 444566677899999998654 2345566667778899999999999999998776 2 2455566666543 44
Q ss_pred HHHH---HHHhCCchhHH
Q 019021 307 SFIF---AKEYGLHADVL 321 (347)
Q Consensus 307 ~~i~---a~~~~~d~~~a 321 (347)
.-+| +.+||-++|..
T Consensus 123 ggLY~aL~~qyGd~~D~g 140 (314)
T TIGR00793 123 GGLYASIMQQYGTKEEAG 140 (314)
T ss_pred HHHHHHHHHHcCCHhhhh
Confidence 4555 77999544433
No 42
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=77.52 E-value=56 Score=29.65 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=54.6
Q ss_pred HHHHHhcCchhHHH-HHHHHHHhhccccCCC-CChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHH
Q 019021 192 VWLKVAMNPNAYAC-IFGIAWAFVSNRWHFE-MPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVL 269 (347)
Q Consensus 192 ~~~~~~~nP~iia~-~~gl~~~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~ 269 (347)
..|+ ++.|.+.+. +.|++++.. ... +++. +.++.+++....+-++..|..++... .++..|........
T Consensus 10 l~~~-l~lP~~v~~il~GillGp~----~lg~i~~~--~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 10 LSRR-LGIPSVLGYLLAGVLIGPS----GLGLISNV--EGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGVGVL 80 (273)
T ss_pred HHHH-hCCCHHHHHHHHHHHhCcc----cccCCCCh--HHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHH
Confidence 3444 577776655 557777643 222 2221 46888999999999999999987654 34566666666666
Q ss_pred HHHHHHHHHHH--HHHHcCCCh
Q 019021 270 KFIAGPAAMAI--GAIAMGLHG 289 (347)
Q Consensus 270 rlii~P~i~~~--~~~~~~~~~ 289 (347)
-.+ .|.+..+ ..+.++.+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~ 101 (273)
T TIGR00932 81 QVL-VPGVLLGLLLGHLLGLAL 101 (273)
T ss_pred HHH-HHHHHHHHHHHHHHCCCH
Confidence 654 4633322 345566654
No 43
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.89 E-value=1.1e+02 Score=31.18 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=58.3
Q ss_pred hcCchhHHH-HHHHHHHhhccccCCC-CChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021 197 AMNPNAYAC-IFGIAWAFVSNRWHFE-MPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG 274 (347)
Q Consensus 197 ~~nP~iia~-~~gl~~~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~ 274 (347)
++.|.+++- +.|++++.. +.. +++ .+.++.+++...-+-||..|..++... . ++..+........-+++.
T Consensus 28 l~~P~ivg~IlaGillGp~----~lg~~~~--~~~~~~la~lGli~llF~~Gle~d~~~-l-~~~~~~~~~~~~~~~~~~ 99 (558)
T PRK10669 28 LRISPLVGYLLAGVLAGPF----TPGFVAD--TKLAPELAELGVILLMFGVGLHFSLKD-L-MAVKSIAIPGAIAQIAVA 99 (558)
T ss_pred cCCCHHHHHHHHHHhhCcc----ccccccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH-H-HHHhhHHHHHHHHHHHHH
Confidence 688888876 455665433 222 122 256788999999999999999988654 2 222233333333444333
Q ss_pred HHHHHHHHHHcCCChhH-HHHHhHHhccChhhHHHHHHH
Q 019021 275 PAAMAIGAIAMGLHGDV-LRVAIIQAALPQSITSFIFAK 312 (347)
Q Consensus 275 P~i~~~~~~~~~~~~~~-~~~~vl~~a~P~a~~~~i~a~ 312 (347)
-++...+.+.++.+... ......++.+.+++..-++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e 138 (558)
T PRK10669 100 TLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEE 138 (558)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444556655322 222333444444544444444
No 44
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=72.98 E-value=83 Score=29.49 Aligned_cols=130 Identities=14% Similarity=0.090 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHH
Q 019021 201 NAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAI 280 (347)
Q Consensus 201 ~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~ 280 (347)
.++++++|.++.-. .-++|+.+.+..+. ..|+.-+.+|..++.+. ..+..++-+......=. +.=.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~-~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTI-VTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHH-HHHHHHHH
Confidence 67788888888544 33466666666554 88999999999998765 22334443333332221 22222223
Q ss_pred HHHHcCCChhHHHHHh--H--HhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 281 GAIAMGLHGDVLRVAI--I--QAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 281 ~~~~~~~~~~~~~~~v--l--~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
+...++.|+......- - --+.|.|+...- ..++-..+.+++-+.-+.++..+..|+....
T Consensus 239 i~rllg~~~~~g~li~stAGnAIcgpAAVaAad--P~~~~~~~~Ataqvaa~vivTail~P~~t~~ 302 (312)
T PRK12460 239 ADRLVGGTGIAGAAASSTAGNAVATPLAIAAAD--PSLAPVAAAATAQVAASVIVTAILTPLLTSW 302 (312)
T ss_pred HHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677765532221 0 012333333211 1222233445555555556666666665433
No 45
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=72.02 E-value=6.8 Score=34.37 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=60.7
Q ss_pred HHHhchhhhhchh-hhhchhHHHHHHHHHHHHHHHHHHHHHHHHc---CCChhHHHHHhHHhccChhhHHHH-HHHHhCC
Q 019021 242 MFSMGIFMASQEK-LIACGTSLTIFGMVLKFIAGPAAMAIGAIAM---GLHGDVLRVAIIQAALPQSITSFI-FAKEYGL 316 (347)
Q Consensus 242 L~~lG~~l~~~~~-~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~---~~~~~~~~~~vl~~a~P~a~~~~i-~a~~~~~ 316 (347)
.+.-|..+....- .-...|+.-+.....-+.+.|.+.+.++... +.|.....-+.+.++||+.+.+.+ +....|.
T Consensus 64 F~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGG 143 (287)
T KOG4821|consen 64 FLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGG 143 (287)
T ss_pred EeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCc
Confidence 3444555543321 1124677667777777889999999887654 356677788888999999988554 4556666
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 019021 317 HADVLSTAVIFGMIVSLPLMI 337 (347)
Q Consensus 317 d~~~aa~~i~~stlls~~t~~ 337 (347)
|+ ++..+-|.+++..+-+
T Consensus 144 Na---~A~~v~S~f~g~L~~~ 161 (287)
T KOG4821|consen 144 NA---SALCVCSVFIGNLLGA 161 (287)
T ss_pred cH---HHHHHHHHHHHHHhhh
Confidence 65 4455666666655544
No 46
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=71.68 E-value=90 Score=29.34 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHH
Q 019021 201 NAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAI 280 (347)
Q Consensus 201 ~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~ 280 (347)
++++..+.-...-. ..+.|+.+.+..+.+-+ ..+|..+.... -...++.+.....=.+..-+....
T Consensus 5 ~~ia~~~~~~~~~~----~~~~p~~~r~~~q~ilG-------~~iG~~~t~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 70 (318)
T PF05145_consen 5 PMIAVIIAALFGPL----PLRVPRRLRNAGQAILG-------VSIGSSFTPEV---LAQLASWWPPMLLLLVVTLLLSLV 70 (318)
T ss_pred HHHHHHHHHHhCCC----ccCCCHHHHHHHHHHHH-------HHHHcccCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCChhHHHHHhHHhccChhhH-HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021 281 GAIAMGLHGDVLRVAIIQAALPQSIT-SFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILE 344 (347)
Q Consensus 281 ~~~~~~~~~~~~~~~vl~~a~P~a~~-~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il~ 344 (347)
..+.+.--...-...-+.+++|-+.+ -..+|+++|.|.+.++..=..=.++-+.++|.....+.
T Consensus 71 ~~~~l~r~~~~d~~TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~ 135 (318)
T PF05145_consen 71 GAWLLRRISGLDRATAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLG 135 (318)
T ss_pred HHHHHHHHcCCChhHHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
No 47
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=66.85 E-value=1.8e+02 Score=31.03 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred HHhcCchhHHHHHHHHHHhhccccCCCCChhH-----HHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHH
Q 019021 195 KVAMNPNAYACIFGIAWAFVSNRWHFEMPSIM-----EGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVL 269 (347)
Q Consensus 195 ~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i-----~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~ 269 (347)
+.-...++++.++|+++... +....++. ......+...+.++.+|..|..+.... .++.|+.++.....
T Consensus 35 Rl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~--Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 35 KLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY--MLKHWVSVTMLLVP 108 (810)
T ss_pred hcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHhHHHHHHHHHH
Confidence 34457788999999998875 44433322 233333888999999999999987654 35567666655544
Q ss_pred HHHHHHHHHHHHHH-H-cCCCh
Q 019021 270 KFIAGPAAMAIGAI-A-MGLHG 289 (347)
Q Consensus 270 rlii~P~i~~~~~~-~-~~~~~ 289 (347)
=+.+.=+++.++.+ + .+++.
T Consensus 109 ~M~lT~livAL~a~~Li~GL~~ 130 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLNF 130 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 44444343333333 2 35553
No 48
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=66.28 E-value=1.9e+02 Score=31.11 Aligned_cols=155 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCchhHHH-HHHHHHHhhccccCCCC---------ChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhh
Q 019021 187 HLMKLVWLKVAMNPNAYAC-IFGIAWAFVSNRWHFEM---------PSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLI 256 (347)
Q Consensus 187 ~~~~~~~~~~~~nP~iia~-~~gl~~~~~~~~~~~~l---------P~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~ 256 (347)
.+.-..+.+-++.|.+++- +.|++++.. .... |..-.+.++.+++...-+-||.+|+.++.. ..
T Consensus 55 a~l~~~ll~rl~~P~ivgeIlaGIlLGPs----~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~--~l 128 (832)
T PLN03159 55 TRLLVFILKPFRQPRVISEILGGVILGPS----VLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDIS--VI 128 (832)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHhcCHh----hhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHH--HH
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChh-------HHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHH
Q 019021 257 ACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGD-------VLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGM 329 (347)
Q Consensus 257 ~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~-------~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~st 329 (347)
++..|..+.....-+++-=.+++.+.+.++.... .....+.++.+-.++..-++.+.--.+++.....+..+.
T Consensus 129 r~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaav 208 (832)
T PLN03159 129 RRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAAL 208 (832)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 019021 330 IVSLPLMIAYFAILEFAH 347 (347)
Q Consensus 330 lls~~t~~i~~~il~~~~ 347 (347)
+==+..+.+...+....+
T Consensus 209 v~Dl~~~ilLav~~~l~~ 226 (832)
T PLN03159 209 VNDMCAWILLALAIALAE 226 (832)
T ss_pred HHHHHHHHHHHHHHHHHh
No 49
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.68 E-value=1.7e+02 Score=30.28 Aligned_cols=118 Identities=11% Similarity=0.049 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH-HHHHhHH-hcc
Q 019021 224 SIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDV-LRVAIIQ-AAL 301 (347)
Q Consensus 224 ~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~-~~~~vl~-~a~ 301 (347)
..+.+-++.+.+...|+-.+.+|++++... . ...+..+...++..++.-++.++..+..++.+... ....+++ ..-
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~~-l-~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~G 337 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFGT-L-LENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGG 337 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccc
Confidence 456677777788899999999999998653 2 22344445555667777788888888888886533 3333333 345
Q ss_pred ChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 302 PQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 302 P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
..+.....++.+.|.=++...+.+....++|....|+...+.
T Consensus 338 ef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 338 EFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred cHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666777776444455555567788888888776543
No 50
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=60.21 E-value=1.6e+02 Score=28.01 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=43.8
Q ss_pred CchhH-HHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHH
Q 019021 199 NPNAY-ACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFG 266 (347)
Q Consensus 199 nP~ii-a~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~ 266 (347)
-|-++ +.+...+++-. ..+|+...+.++.+++...-++|..+|...+..+ .++..+|.....
T Consensus 251 ~P~FvlgFl~~~~l~S~-----~~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g 313 (335)
T TIGR00698 251 IPWFAVLFIGVAIFNSF-----DLLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFAS 313 (335)
T ss_pred CChHHHHHHHHHHHHHh-----hhCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHH
Confidence 45444 44444444433 3589999999999999999999999999988765 444556655544
No 51
>PRK05326 potassium/proton antiporter; Reviewed
Probab=58.60 E-value=2.2e+02 Score=29.06 Aligned_cols=87 Identities=9% Similarity=-0.032 Sum_probs=51.9
Q ss_pred hcCchhHHH-HHHHHHHhhccccCCC-CChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021 197 AMNPNAYAC-IFGIAWAFVSNRWHFE-MPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG 274 (347)
Q Consensus 197 ~~nP~iia~-~~gl~~~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~ 274 (347)
++.|.+++. +.|+++... +.. ++..-.+..+.+++...++.||..|..++... .++.++........-. +.
T Consensus 28 ~~~P~ll~~il~GillGp~----~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~la~~gv-~~ 100 (562)
T PRK05326 28 LGIPSLLLFLAIGMLAGED----GLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALSLATLGV-LI 100 (562)
T ss_pred cCCcHHHHHHHHHHHhCcc----ccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHHHHHHHH-HH
Confidence 467776655 567777543 322 21111356788999999999999999987654 3445555554444443 33
Q ss_pred HHHHH--HHHHHcCCChh
Q 019021 275 PAAMA--IGAIAMGLHGD 290 (347)
Q Consensus 275 P~i~~--~~~~~~~~~~~ 290 (347)
|.+.. ...+.++.+..
T Consensus 101 t~~~~g~~~~~l~g~~~~ 118 (562)
T PRK05326 101 TAGLTGLFAHWLLGLDWL 118 (562)
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 44442 23345676543
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=58.25 E-value=1.8e+02 Score=28.09 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=80.2
Q ss_pred cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHH---HHHHHH
Q 019021 198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMV---LKFIAG 274 (347)
Q Consensus 198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~---~rlii~ 274 (347)
..|++++.+++.+++-+ |+--++.-.+.-+.+.+-..|+++..+=.+.+.++ ..+...| .+...+ +=.++.
T Consensus 25 l~~~vl~~~~~~~lsnl----gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~-~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 25 LPGAVLCYLLGMLLSNL----GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGR-LLLAFLIGAVGTVIG 98 (378)
T ss_pred cCHHHHHHHHHHHHHHC----CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHH-HHHHHHHHHHHHHHH
Confidence 58999999999999988 65422333556677777888888776655544433 2222222 221111 111111
Q ss_pred HHHHHHHHHHcC--CChhHHHHHhHHhc--cChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 275 PAAMAIGAIAMG--LHGDVLRVAIIQAA--LPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 275 P~i~~~~~~~~~--~~~~~~~~~vl~~a--~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
=.+++ .+++ +.++..+..-..++ .=-+.|-.-+++.++.+++..++.+..-++++-+-+.+.+.+
T Consensus 99 ~~va~---~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 99 AVVAF---LLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHH---HHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2222 24555555544444 445567777888999998888888888888776666555544
No 53
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=55.27 E-value=34 Score=30.53 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=67.4
Q ss_pred HHhcCchhHHHHHHHHHHhhccccCC-CCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHH---
Q 019021 195 KVAMNPNAYACIFGIAWAFVSNRWHF-EMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLK--- 270 (347)
Q Consensus 195 ~~~~nP~iia~~~gl~~~~~~~~~~~-~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~r--- 270 (347)
++..-|.++|.++|++++.. .. ..+.++.+--...++....+++..+++.+...--.+-....+.-.+....
T Consensus 18 ~i~llPmlyA~iig~~~~~~----~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~G 93 (241)
T PF11299_consen 18 KIVLLPMLYALIIGMALGPQ----KLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFG 93 (241)
T ss_pred eeehHHHHHHHHHHHHhcch----hhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhc
Confidence 44568999999999999765 22 23466777777777777788888888777543211111222222222221
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHH
Q 019021 271 FIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVL 321 (347)
Q Consensus 271 lii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~a 321 (347)
.+--.++++.+..++|+..+..-...=.+= =.+..+++++||.|+++-
T Consensus 94 nlGTillaLPiAllLGlkREaIGat~SI~R---Ep~laiI~ekYGldSpEg 141 (241)
T PF11299_consen 94 NLGTILLALPIALLLGLKREAIGATFSIGR---EPNLAIISEKYGLDSPEG 141 (241)
T ss_pred chhhHHHHhHHHHHhcccHHhhcceeeccc---CcceeeeehhcCCCCccc
Confidence 223344445555555655443322111111 123456789999998654
No 54
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=48.55 E-value=3.2e+02 Score=29.31 Aligned_cols=109 Identities=12% Similarity=0.034 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHhhccccCC-CCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhh-----hchhHHHHHHHHHHHH
Q 019021 199 NPNAYACIFGIAWAFVSNRWHF-EMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLI-----ACGTSLTIFGMVLKFI 272 (347)
Q Consensus 199 nP~iia~~~gl~~~~~~~~~~~-~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~-----~~~~~~~~~~~~~rli 272 (347)
+-++-+++.|+.++-. +. .--.....+-+.+......+..+.+|+.+.... .. ...|+.++.++++=++
T Consensus 265 SGfLAVFVAGl~~gn~----~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~-l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKD-FNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred ccHHHHHHHHHHHhcc----cchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhh-cccchhhHHHHHHHHHHHHHHHH
Confidence 4555566667766532 21 000012234445556667788999999986542 11 1245555655555556
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHH
Q 019021 273 AGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAK 312 (347)
Q Consensus 273 i~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~ 312 (347)
.-|.+++......+........+++-..-|-++.+..|+.
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl~ 379 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAAI 379 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHHH
Confidence 6666666544444433445666777788898888777654
No 55
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.67 E-value=1.6e+02 Score=31.11 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhh
Q 019021 188 LMKLVWLKVAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 188 ~~~~~~~~~~~nP~iia~~~gl~~~~~ 214 (347)
...+.+|++++||.....+++-++-..
T Consensus 380 dfp~s~~~ll~N~if~~~~l~~~~~~~ 406 (735)
T KOG3626|consen 380 DFPKSIKRLLSNPIFMLVVLASVIESL 406 (735)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 355678899999999999988877665
No 56
>PRK05326 potassium/proton antiporter; Reviewed
Probab=47.24 E-value=2.9e+02 Score=28.13 Aligned_cols=108 Identities=8% Similarity=0.078 Sum_probs=58.9
Q ss_pred cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHH
Q 019021 198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA 277 (347)
Q Consensus 198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 277 (347)
.|+.+-+.+.|+++.-. +.+--..+.+..+.+++...|+.-+.+|+.+.... .....+.......+.-++.=|+-
T Consensus 244 ~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l~~~~~~~l~i~~~l~~vaR~l~ 318 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-LLDIALPALLLALFLILVARPLA 318 (562)
T ss_pred CcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666677777777532 22222457778888888889999999999986543 21111222222222223333555
Q ss_pred HHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHH
Q 019021 278 MAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAK 312 (347)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~ 312 (347)
++.....++.+.... .++-.+.|=+..+.++|.
T Consensus 319 v~l~~~~~~~~~~e~--~~i~~~g~RG~v~i~lA~ 351 (562)
T PRK05326 319 VFLSLLPFRFNLREK--LFISWVGLRGAVPIVLAT 351 (562)
T ss_pred HHHHHccCCCCHhhh--heeeeecchhHHHHHHHH
Confidence 554444445544333 333334566666666553
No 57
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=44.16 E-value=2.8e+02 Score=26.13 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Q 019021 267 MVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMI 337 (347)
Q Consensus 267 ~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~ 337 (347)
...-....-.+.+.....++++.+.++.+..+.++=-+..+..+|..+=.+++.++.......++=++.+.
T Consensus 252 v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~~~~ 322 (328)
T TIGR00832 252 LLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIEVPVML 322 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehhhhh
Confidence 44555666666676777889999999999999999888888888887755667777777777776665543
No 58
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=41.63 E-value=3e+02 Score=26.70 Aligned_cols=95 Identities=9% Similarity=-0.081 Sum_probs=53.7
Q ss_pred HHHHhhhhhhhccccChH---HhHHHHHHHHHHHhHHHHHH-HhccCCCCC----cchhhHHHHHHHHHHHHHHHHHHHH
Q 019021 20 ALMLGYGSVKWWRIFTLE---QCDAINRLVCYFTLPLFTVE-FTAHVDPFK----WNYRCIAADALSKLIIAIVLALWAK 91 (347)
Q Consensus 20 ii~iG~~~~k~~~~~~~~---~~~~ls~lv~~i~lP~lif~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (347)
++.+=.++ |-.+..+++ ..+.++++..+=+.=.+++. .+.-+|+++ ..|..+.......+.....+++..|
T Consensus 296 MIil~a~l-k~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~gr 374 (438)
T COG3493 296 MIILVAIL-KAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGR 374 (438)
T ss_pred HHHHHHHH-HHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 556777765 45667777665444444443 465577664 2465555544444555677888889
Q ss_pred HhCCCchhhHHhH-hhhhccccccc
Q 019021 92 CSSKGSYCWSITS-FSLCTLTSSLV 115 (347)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~N~~~ 115 (347)
+.+--+-|..+.. .|.+.++-+|.
T Consensus 375 l~~~YPVEaAI~aglC~a~~GGtGD 399 (438)
T COG3493 375 LMGFYPVEAAITAGLCMANMGGTGD 399 (438)
T ss_pred HhcCCchHHHHHHhHHhcCCCCCCc
Confidence 8765555655444 43333444443
No 59
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=40.03 E-value=3.3e+02 Score=25.68 Aligned_cols=300 Identities=12% Similarity=0.033 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCC---cchhhHHHH---HHHHHHHHHHHH
Q 019021 14 MVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFK---WNYRCIAAD---ALSKLIIAIVLA 87 (347)
Q Consensus 14 i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~ 87 (347)
.+|=..++-+|...--..|+++ ..+.-..-+-+-.+|+.++.-..+-|.++ ..-+.+..+ ..+..+++.+.+
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3455555556655433468885 56677788889999999999888877553 222222222 233444445555
Q ss_pred HHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhh--ccccchhHHHHHHHHHHHHHHHHHHHHhh---hhccccCC
Q 019021 88 LWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMY--GQMAVDLVVQFSVIQAIVWLPVLLLVLEI---RRAGTTDA 162 (347)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~--G~~~~~~~~~~~i~~~~~~~~~~~~l~~~---~~~~~~~~ 162 (347)
...+-...| ..+...++.++-.+-..++ .-.++.+ +++..++....|.++--+++.+-.++... .++.+.+.
T Consensus 109 p~~ksf~gd-~Wka~gmi~gSytGGSaNm--AAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpd 185 (384)
T COG5505 109 PLLKSFIGD-LWKAGGMISGSYTGGSANM--AAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPD 185 (384)
T ss_pred HHHhhhcch-HHhhhhheeeeeeCCcchH--HHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 444433222 2222233333333333332 3334444 33444455555555433333333333221 11111111
Q ss_pred CCc-cCCcccccccccccCCCC---hh----------------HHHHHHHHHH--------HhcCchhHHHHHHHHHHhh
Q 019021 163 GAV-HVDKDLEGTINAEASSRP---DF----------------WHLMKLVWLK--------VAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 163 ~~~-~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~~~--------~~~nP~iia~~~gl~~~~~ 214 (347)
+++ +.++|| +.. +++.+|+ +. ...+.+..++ .-+.-.++-.+.|+++.++
T Consensus 186 esKL~A~~~e-~a~-~e~ywKrkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt 263 (384)
T COG5505 186 ESKLKADGNE-GAS-AESYWKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT 263 (384)
T ss_pred HHHHhhhhhh-hhh-hhhhhhcCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC
Confidence 100 011110 000 0000111 00 0001111111 0112235667888888887
Q ss_pred ccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 019021 215 SNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRV 294 (347)
Q Consensus 215 ~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~ 294 (347)
|. -++|..-+-..-+ ...-.+++..|+.+.... .....+...++-++..-++.+.....+..|-+...+
T Consensus 264 Pf---~~lpgs~elgtv~---lY~~v~vias~Ad~~~i~-----taP~~i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~ 332 (384)
T COG5505 264 PF---ERLPGSQELGTVL---LYLFVVVIASPADLRLIV-----TAPLIILFGFIILISHLAVSFAAGKLFRVDLEEILL 332 (384)
T ss_pred cc---ccCCchhhhhHHH---HHHHHHHhccchhHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 21 1355432211111 122345555666554432 122233334444555666666666777777665554
Q ss_pred HhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 019021 295 AIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLP 334 (347)
Q Consensus 295 ~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~ 334 (347)
..+.- .--...+.++|..|| +++++-.+...++-.++
T Consensus 333 AslAn-iGG~~sAp~~A~A~n--r~lv~~gvlmg~lG~~i 369 (384)
T COG5505 333 ASLAN-IGGPTSAPAMAIAKN--RELVAPGVLMGTLGYLI 369 (384)
T ss_pred HHHhc-cCCccchhHHHhhcC--chhcchHHHHHHHHHHH
Confidence 44432 222334566777877 77887777777765544
No 60
>COG5546 Small integral membrane protein [Function unknown]
Probab=39.83 E-value=48 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=27.6
Q ss_pred hcCchhHHHHHHHHHHhhccc---cCCCCChhHHHHHH
Q 019021 197 AMNPNAYACIFGIAWAFVSNR---WHFEMPSIMEGSIL 231 (347)
Q Consensus 197 ~~nP~iia~~~gl~~~~~~~~---~~~~lP~~i~~~l~ 231 (347)
+|||..|-.++|.++-+.|+. .|+++|.-+.+.++
T Consensus 8 mknkvf~vail~~ifllAQqll~~fGI~~~~nl~d~~n 45 (80)
T COG5546 8 MKNKVFLVAILGAIFLLAQQLLGWFGIKLPSNLADIAN 45 (80)
T ss_pred ecCceehHHHHHHHHHHHHHHHHHeeeecchhHHHHHH
Confidence 689999999999999888772 58899877555444
No 61
>COG2855 Predicted membrane protein [Function unknown]
Probab=37.22 E-value=3.7e+02 Score=25.52 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHH
Q 019021 220 FEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTI 264 (347)
Q Consensus 220 ~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~ 264 (347)
..+|+.+.+.++.++....-.+|-.+|...+..+ ..+..-|...
T Consensus 270 ~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~-l~~~G~kpl~ 313 (334)
T COG2855 270 GLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKA-LKKAGGKPLL 313 (334)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHH-HHHcCccHHH
Confidence 3489999999999999999999999999987654 3334444433
No 62
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=35.97 E-value=52 Score=20.55 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=19.8
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhh
Q 019021 190 KLVWLKVAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 190 ~~~~~~~~~nP~iia~~~gl~~~~~ 214 (347)
|+..-.++.-|...|.++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567789999999999999764
No 63
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=33.74 E-value=5.1e+02 Score=26.05 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhhhhcc---ccChHHhHHHHHHHHHHHhHHHHHHHhccC
Q 019021 16 PLYVALMLGYGSVKWWR---IFTLEQCDAINRLVCYFTLPLFTVEFTAHV 62 (347)
Q Consensus 16 pi~~ii~iG~~~~k~~~---~~~~~~~~~ls~lv~~i~lP~lif~~~~~~ 62 (347)
-++.++...|-+-|-.| +.+......+.-+=.+..+|+.+.-.+.-+
T Consensus 31 ~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~ 80 (491)
T PF03219_consen 31 LMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYS 80 (491)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777765333 445557778888888899998776554433
No 64
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=32.75 E-value=21 Score=34.09 Aligned_cols=130 Identities=12% Similarity=0.112 Sum_probs=7.4
Q ss_pred cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHH-HhHHHHHHHHhchhhhhchhhh--hchhHHHHHHHHHHHHHH
Q 019021 198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMS-RAGTGTAMFSMGIFMASQEKLI--ACGTSLTIFGMVLKFIAG 274 (347)
Q Consensus 198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~-~~~~plaL~~lG~~l~~~~~~~--~~~~~~~~~~~~~rlii~ 274 (347)
.+|.+-+.+.|++++-. +..+.+.+-++.+. +...|+-...+|+.++... .. ...+.........+++.-
T Consensus 234 ~s~~l~af~~Gl~~~~~------~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~-l~~~~~~~~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNS------PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSS-LFNSPSVIILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccc------cccchhhhcccchhhHHHhhHHhhhhcccccccc-cccchhhhhhHHHHHHHHHHhh
Confidence 36777788888888732 22233455566666 8999999999999998543 21 234444444455555555
Q ss_pred HHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHH---HHHhCCchhHHHHHHHHHHHHHHHH
Q 019021 275 PAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIF---AKEYGLHADVLSTAVIFGMIVSLPL 335 (347)
Q Consensus 275 P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~---a~~~~~d~~~aa~~i~~stlls~~t 335 (347)
++.++......+.+.......- ....|-+.....+ +.++|...+...+.+....+++.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii 369 (380)
T PF00999_consen 307 FIGVYLASRLFGIPWKEALFIG-LGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIII 369 (380)
T ss_dssp ----------------HHHHTT-TTSS--HHHHHHHHHHHHH----------------------
T ss_pred hceeehhhhhcccccchhHHHH-HhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHH
Confidence 5555555555555544432222 2223344444444 3344432333344444444444443
No 65
>PRK03818 putative transporter; Validated
Probab=31.82 E-value=5.7e+02 Score=26.09 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhch--hhhhchhHHHHHHHHHHHHHHHHHHH
Q 019021 202 AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQE--KLIACGTSLTIFGMVLKFIAGPAAMA 279 (347)
Q Consensus 202 iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~--~~~~~~~~~~~~~~~~rlii~P~i~~ 279 (347)
--+.+.|+++.......+.++|+...+.++.++ .-+-+.++|.+-...- ..++..++......++ .++..++++
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~g---l~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~ 109 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFG---LILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTA 109 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHH---HHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHH
Confidence 345666777776211117778887766666554 3355566666643221 1122233333333222 222333344
Q ss_pred HHHHHcCCChhHHHHHhHH-hcc-ChhhHHHHHH-HHhCCc---hhHHHHHHHHHHHHHHHHHHHHHH
Q 019021 280 IGAIAMGLHGDVLRVAIIQ-AAL-PQSITSFIFA-KEYGLH---ADVLSTAVIFGMIVSLPLMIAYFA 341 (347)
Q Consensus 280 ~~~~~~~~~~~~~~~~vl~-~a~-P~a~~~~i~a-~~~~~d---~~~aa~~i~~stlls~~t~~i~~~ 341 (347)
.+.+.+++|+... +-++. +.+ +|+.....=+ +..+.+ .+..+.....++.+.++.+.+...
T Consensus 110 ~~~~~~~~~~~~~-~G~~aGa~T~tp~l~aa~~~~~~~~~~~~~~~~~a~gYa~~Yp~g~i~~il~~~ 176 (552)
T PRK03818 110 ILHKLFGIPLPVM-LGIFSGAVTNTPALGAGQQILRDLGTPGDLVDQMGMGYAMAYPFGICGILLSMW 176 (552)
T ss_pred HHHHHhCCCHHHH-HHHhhccccccHHHHHHHHHHhccCCCccccCCcchhhHhHhHHHHHHHHHHHH
Confidence 5556788887644 33333 222 3333222211 112222 133445556666666555444433
No 66
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=29.94 E-value=5e+02 Score=24.85 Aligned_cols=143 Identities=8% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHH-------------------HHHHHHHHhHHHHHHHHhchhhh
Q 019021 190 KLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIME-------------------GSILIMSRAGTGTAMFSMGIFMA 250 (347)
Q Consensus 190 ~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~-------------------~~l~~l~~~~~plaL~~lG~~l~ 250 (347)
+...+...--..+++...|.++... |++.|..+. +.+...++..+.+. +|.++.
T Consensus 4 r~~~~~~w~i~l~ls~~~g~l~~~~----~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~l~~~~q~ilG~~---ig~~~t 76 (352)
T COG3180 4 RVPIILQWFILLLLSLLGGWLLTLL----HVPAAWMLGAPLLAGIVAGLRGLTLPLPRGLFKAGQVILGIM---IGASLT 76 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHH---HhhhcC
Q ss_pred hch-hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhH-HHHHHHHhCCchhHHHHHHHHH
Q 019021 251 SQE-KLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSIT-SFIFAKEYGLHADVLSTAVIFG 328 (347)
Q Consensus 251 ~~~-~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~-~~i~a~~~~~d~~~aa~~i~~s 328 (347)
... ...+..|......++.-+...-...+.....-+.|+... ..+++|-+.. -..+|++||.|...+|..-..=
T Consensus 77 ~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~~~VAl~Q~lR 152 (352)
T COG3180 77 PSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGADLRLVALMQYLR 152 (352)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCChhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 019021 329 MIVSLPLMIAYFAIL 343 (347)
Q Consensus 329 tlls~~t~~i~~~il 343 (347)
.+.-..+.|+....+
T Consensus 153 vl~Vvl~vplv~~~~ 167 (352)
T COG3180 153 VLFVVLLAPLVSRLF 167 (352)
T ss_pred HHHHHHHHHHHHHHh
No 67
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=29.18 E-value=5.3e+02 Score=24.91 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=37.1
Q ss_pred HhHHhccChhhHHHH-------HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 295 AIIQAALPQSITSFI-------FAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 295 ~vl~~a~P~a~~~~i-------~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
-.+..+.|....++. +++.++.|++.....+.+++.+.++...+|...
T Consensus 184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~ 238 (394)
T PF03222_consen 184 SYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFS 238 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467787777654 467889899999999999999988888888543
No 68
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=28.51 E-value=3.9e+02 Score=23.10 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 202 AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG 281 (347)
Q Consensus 202 iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~ 281 (347)
+.+.++|+++... .. ++ .+..+...+...-+-++.+|+++..++.. .+-+...-.|.++.|+.+..-
T Consensus 2 l~~li~Gi~lG~~----~~--~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~-----l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYF----LR--PP--FSLIDKISTYALYLLLFLVGIDLGSNREI-----LRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHH----hc--cc--ccccccHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHhhHHHHHHHHHHHHH
Confidence 3456778877665 11 11 22226777788889999999999876421 122222344555666666432
Q ss_pred H--------HHcCCChhHHHHHhHHhccChhh-HHHHHHHHhCCchhHHHHHHHHHHH----HHHHHHHHHHH
Q 019021 282 A--------IAMGLHGDVLRVAIIQAALPQSI-TSFIFAKEYGLHADVLSTAVIFGMI----VSLPLMIAYFA 341 (347)
Q Consensus 282 ~--------~~~~~~~~~~~~~vl~~a~P~a~-~~~i~a~~~~~d~~~aa~~i~~stl----ls~~t~~i~~~ 341 (347)
. .+++.+ ....+.+-+.+===. .+..+++.++ + +..+.-+++.+ ++++.+|+..-
T Consensus 69 Sllgg~l~~~ll~~~--~~~~lav~sG~GwYSlsg~~i~~~~~--~-~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 69 SLLGGLLASLLLGLS--LKESLAVASGFGWYSLSGVLITQLYG--P-ELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHccCcHHHhHHHHHHhhhC--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233333 233333333332222 2334444444 2 34455566665 47777777654
No 69
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=27.74 E-value=3.1e+02 Score=21.79 Aligned_cols=76 Identities=7% Similarity=-0.014 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCC-CCc--chhhHHHHHHHHHHHHHHHHHHHHH
Q 019021 16 PLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDP-FKW--NYRCIAADALSKLIIAIVLALWAKC 92 (347)
Q Consensus 16 pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (347)
..++++++.-.+ +|+|+++++..+.+.-.- ..-+|..+=.+- +.+. ... -+.-+.....+...++...-.+.|+
T Consensus 39 AMlLLi~~~~~l-~k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA-~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~r~ 115 (125)
T TIGR00807 39 AMILLIISKELL-AKRGHLPQVTQFGVGFWS-AMYIPIVVAMAA-GQNVVAALSGGMLALLASVAALIVTVLVIRWISKS 115 (125)
T ss_pred HHHHHHHHHHHH-HHcCCCChhHHhHHHHHH-ccHhHHHHHHhh-hchhHHHhcCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888 458999999888765322 122454443332 2332 222 2333344445555566655666666
Q ss_pred hC
Q 019021 93 SS 94 (347)
Q Consensus 93 ~~ 94 (347)
-+
T Consensus 116 g~ 117 (125)
T TIGR00807 116 SY 117 (125)
T ss_pred CC
Confidence 43
No 70
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=27.68 E-value=1.5e+02 Score=29.41 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccCCcccccccccccCCCChhHHHHHHHHHHHhcCch
Q 019021 131 DLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPN 201 (347)
Q Consensus 131 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~ 201 (347)
..+.+..+.|.++.|.++.++.-++.+. +..+++...+..|+.+..+|.
T Consensus 611 ~~vlLiGvvNl~VSF~lAl~vAlRSr~t----------------------~i~s~r~I~~~VW~~Ik~~PL 659 (677)
T COG4389 611 FSVLLIGLVNLCVSFSLALFVALRSRGT----------------------KIGSIRNIIKSVWNQIKSNPL 659 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------cchhHHHHHHHHHHHHhcCCc
Confidence 3355566677777788887776554432 123445556677777777774
No 71
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=27.52 E-value=6e+02 Score=25.00 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=48.2
Q ss_pred CCCChhHHHHHHHHHH------hHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Q 019021 220 FEMPSIMEGSILIMSR------AGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLR 293 (347)
Q Consensus 220 ~~lP~~i~~~l~~l~~------~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~ 293 (347)
-++|+.+.+.+..++. ...-+.++.+|+.++... .=++..|++. .....+|+|+.+..
T Consensus 295 ~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~a---------------~ili~~Pil~-Pi~~~~Gidpv~fg 358 (425)
T PRK15060 295 AELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLTP---------------TVLILTPVLM-PLVKEAGIDPIYFG 358 (425)
T ss_pred cChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHHH---------------HHHHHHHHHH-HHHHHcCCChHHHH
Confidence 3677777777766653 122234455555554332 1145566654 33445799987755
Q ss_pred HHhHH-----hcc-ChhhHHHHHHHHhCCchhHHH
Q 019021 294 VAIIQ-----AAL-PQSITSFIFAKEYGLHADVLS 322 (347)
Q Consensus 294 ~~vl~-----~a~-P~a~~~~i~a~~~~~d~~~aa 322 (347)
+.+.. ..+ |.+.+.++.+.-.+.+.++..
T Consensus 359 ii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~~~i~ 393 (425)
T PRK15060 359 VMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAV 393 (425)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhcCCCHHHHH
Confidence 54433 234 556666666666676765553
No 72
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=27.15 E-value=4.1e+02 Score=24.98 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc-c--hhhHHHHHHHHHHHHHH
Q 019021 9 KVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW-N--YRCIAADALSKLIIAIV 85 (347)
Q Consensus 9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~ 85 (347)
.++..++|+. +|.+++- +|+| .|.+-+=...+.+|.+-|.--++.++++. . ..=++..++...+....
T Consensus 170 ~lv~~llP~i----iG~iLGN----LD~~-~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 170 SLVAALLPII----IGMILGN----LDPD-FRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHH----HHHHHhc----CCHH-HHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 3466677765 5666642 3344 55555556678899999988777776542 1 22223333444444455
Q ss_pred HHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccc
Q 019021 86 LALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAV 130 (347)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~ 130 (347)
.++..|+.++++.... .+.. ++-+|.. +.|-+.+--.++..
T Consensus 241 ~~~~dr~i~~~~g~aG-~A~s-stAGnav--atPaaiA~~dP~~~ 281 (314)
T PF03812_consen 241 LYLADRLILKGNGVAG-AAIS-STAGNAV--ATPAAIAAADPSFA 281 (314)
T ss_pred HHHHHHHHcCCCCcee-ehHH-hhhhhhh--hhhHHHHHhChhhH
Confidence 6677777543222212 2332 4557775 67776666555543
No 73
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=26.46 E-value=7.1e+02 Score=25.46 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhh--hhchhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 019021 204 ACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFM--ASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG 281 (347)
Q Consensus 204 a~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l--~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~ 281 (347)
..+.|+++... +.++|+. +.+....+-++++|.+. .+-+..++..++....+..+= ++.-++++.+
T Consensus 41 vLfvgl~~G~~----g~~i~~~-------v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~-~~~~~~~~~~ 108 (562)
T TIGR03802 41 SLIVAVLIGQL----GIQIDPG-------VKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFA-VSGLITVYAL 108 (562)
T ss_pred HHHHHHHHHhc----CCCCChH-------HHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHcCCChhHHHHHhHHhccChhhHHHHHH--HHhCCchh-------HHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 019021 282 AIAMGLHGDVLRVAIIQAALPQSITSFIFA--KEYGLHAD-------VLSTAVIFGMIVSLPLMIAY-FAILEFA 346 (347)
Q Consensus 282 ~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a--~~~~~d~~-------~aa~~i~~stlls~~t~~i~-~~il~~~ 346 (347)
.+.+++|+....-+.=-+.+=++.....-. .+.+.+++ ..+-.-.+++.+.++.+.+. ..+++.+
T Consensus 109 ~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~~~~~~~~~~~avgYav~YpfGvig~i~~~~~~~p~l 183 (562)
T TIGR03802 109 AKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSPEQKTAYQGNVAVAYAVTYIFGTIGVIIVLVNILPWL 183 (562)
T ss_pred HHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCcchhhccccccceeeehhhhhHHHHHHHHHHHHHHHH
No 74
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=25.82 E-value=6.2e+02 Score=24.54 Aligned_cols=87 Identities=16% Similarity=0.262 Sum_probs=50.9
Q ss_pred CCCCChhHHHHHHHHHHh------HHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 019021 219 HFEMPSIMEGSILIMSRA------GTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVL 292 (347)
Q Consensus 219 ~~~lP~~i~~~l~~l~~~------~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~ 292 (347)
.-++|+.+.+.+..+.+. ..-+.++.+|..++.... =+++.|.+.=.. ...|.|+...
T Consensus 248 ~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a~---------------ilil~Pil~Pi~-~~~GIDPvhf 311 (379)
T COG1593 248 VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTAA---------------ILILTPILLPIA-AALGIDPVHF 311 (379)
T ss_pred HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHHH---------------HHHHHHHHHHHH-HHhCCCceee
Confidence 457888888877766654 455667778887765431 145666655333 4469998665
Q ss_pred HHHhHH-----hccCh-hhHHHHHHHHhCCchhHH
Q 019021 293 RVAIIQ-----AALPQ-SITSFIFAKEYGLHADVL 321 (347)
Q Consensus 293 ~~~vl~-----~a~P~-a~~~~i~a~~~~~d~~~a 321 (347)
.++++. ..+|| +.+-++-+.--+.+.+..
T Consensus 312 Gvv~v~Nl~IGliTPPvG~~Lfv~s~V~~~~~~~~ 346 (379)
T COG1593 312 GVVFVLNLSIGLITPPVGMVLFVASAVGKVPIEAV 346 (379)
T ss_pred HHHHHHHHHhhCCCCCcchhHHHHHhhcCCCHHHH
Confidence 554443 34555 444555555555444544
No 75
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.42 E-value=2.7e+02 Score=26.78 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhh------hccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 019021 15 VPLYVALMLGYGSVK------WWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLAL 88 (347)
Q Consensus 15 ~pi~~ii~iG~~~~k------~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (347)
+|.+....++-.+.| +...+|++..+.++.....+++ +.-+.++--..+.+.....+.......++..+..++
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl-~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFL-AMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhCCCchhhHHhHhhhhccc
Q 019021 89 WAKCSSKGSYCWSITSFSLCTLT 111 (347)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~ 111 (347)
+.+..-.++.|..+.+..-|+++
T Consensus 326 v~fr~~gkdydaavm~~G~~G~g 348 (368)
T PF03616_consen 326 VTFRVMGKDYDAAVMSAGFCGFG 348 (368)
T ss_pred HhhhhhCCChhHHHHhhhhhccC
No 76
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=85 Score=22.52 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhh
Q 019021 6 DVYKVVVAMVPLYVALMLGYGSVK 29 (347)
Q Consensus 6 ~~~~~~~~i~pi~~ii~iG~~~~k 29 (347)
+++..|-..+-+.+.+.+||+..|
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhheec
Confidence 356667777778889999999843
No 77
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=22.92 E-value=4e+02 Score=26.39 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=19.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhh
Q 019021 191 LVWLKVAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 191 ~~~~~~~~nP~iia~~~gl~~~~~ 214 (347)
...+.+++||.+|.+.++-++.+.
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHH
Confidence 355678999999999999888776
No 78
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.09 E-value=8e+02 Score=24.52 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhh
Q 019021 189 MKLVWLKVAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 189 ~~~~~~~~~~nP~iia~~~gl~~~~~ 214 (347)
.++.+...++|.+..-.++..++...
T Consensus 225 ~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 225 LKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHH
Confidence 67777778899998877776666554
No 79
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=21.67 E-value=2.2e+02 Score=26.94 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 019021 203 YACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGA 282 (347)
Q Consensus 203 ia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~ 282 (347)
+..++|..+.-. .-++++......+ ...|..-+.+|..+..+.. ....+.-++..... .++.+.+.....
T Consensus 178 lplliG~~lgnl----~~~l~~~~~~Gi~----~lLp~~~~~lG~~l~lq~i-~~~G~~GilL~~~~-~~~t~~~~~~~~ 247 (326)
T PRK05274 178 LPLLVGFILGNL----DPELRQFLGKAVP----VLIPFFAFALGNGIDLGTI-ITAGLSGILLGVAV-VAVTGIPLYLAD 247 (326)
T ss_pred HHHHHHHHHHhH----HHhhHHHhcCCcE----EEHHHHHHHHhcceeHhHH-HhcCCcchhhhhhH-hhccchhhHhHh
Confidence 666666666543 2223333333322 2778888889999887652 23334333322222 233344444455
Q ss_pred HHcCCChhHHHHHhHH-----hccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 283 IAMGLHGDVLRVAIIQ-----AALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 283 ~~~~~~~~~~~~~vl~-----~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
.+++-++...-..... .+.|.|+... ...+...++.++..+....+++.+..|+...+
T Consensus 248 Rl~~~~~g~~g~a~~ttaG~aic~pAAvaa~--~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 248 RLIGGGNGVAGAAAGSTAGNAVATPAAVAAA--DPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred heeecCCCcchHHHHHHHHHHHHHHHHHHhh--ccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443311111111 1234332221 12333344555555555666666666666544
No 80
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=20.88 E-value=5.5e+02 Score=22.16 Aligned_cols=81 Identities=11% Similarity=-0.016 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q 019021 69 YRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVL 148 (347)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~ 148 (347)
+..+.......+.....+++..++.+.+-++ . .+. +++|+=.. +.=|++..++|.+.=..+.+.|+.-.++..-..
T Consensus 56 ~~~Llipl~tIlGSllgg~l~~~ll~~~~~~-~-lav-~sG~GwYS-lsg~~i~~~~~~~~G~iafl~n~~RE~~a~~~~ 131 (191)
T PF03956_consen 56 KRALLIPLATILGSLLGGLLASLLLGLSLKE-S-LAV-ASGFGWYS-LSGVLITQLYGPELGTIAFLSNLFREILAIILI 131 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-H-HHH-HccCcHHH-hHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455556667777777555444 2 223 24444443 345777788888766677788888888877776
Q ss_pred HHHHh
Q 019021 149 LLVLE 153 (347)
Q Consensus 149 ~~l~~ 153 (347)
+.+..
T Consensus 132 P~~~r 136 (191)
T PF03956_consen 132 PLLAR 136 (191)
T ss_pred HHHHH
Confidence 76665
No 81
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=20.27 E-value=4.5e+02 Score=20.95 Aligned_cols=77 Identities=5% Similarity=-0.009 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHh
Q 019021 16 PLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWN--YRCIAADALSKLIIAIVLALWAKCS 93 (347)
Q Consensus 16 pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (347)
..++++++...+. |+|.++++..+.+.-.- ..-+|..+=.+-.+.-....+ +.-+.........++...-.+.|+-
T Consensus 39 AMlLLI~~~~~l~-k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~lsr~g 116 (125)
T PF03817_consen 39 AMLLLIFARLWLQ-KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLSRIG 116 (125)
T ss_pred HHHHHHHHHHHHH-HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667888888884 57999999888764322 223455443333222122222 2333444455555666556666654
Q ss_pred C
Q 019021 94 S 94 (347)
Q Consensus 94 ~ 94 (347)
+
T Consensus 117 ~ 117 (125)
T PF03817_consen 117 R 117 (125)
T ss_pred C
Confidence 3
Done!