Query 019021
Match_columns 347
No_of_seqs 126 out of 1100
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.2 2.4E-10 8.1E-15 106.8 14.8 142 194-343 13-155 (332)
2 3zux_A Transporter, ASBTNM; tr 96.9 0.012 4.2E-07 54.4 13.4 70 73-144 232-303 (332)
3 2lx0_A Membrane fusion protein 15.8 1.5E+02 0.0052 16.1 2.7 23 7-29 5-27 (32)
4 1yew_C Particulate methane mon 14.1 5.8E+02 0.02 22.1 7.4 54 4-57 89-146 (289)
5 2zy9_A Mg2+ transporter MGTE; 12.4 8.4E+02 0.029 22.7 12.9 103 239-342 357-465 (473)
6 3o7q_A L-fucose-proton symport 10.8 8E+02 0.027 21.5 22.2 25 189-213 247-271 (438)
7 2k1k_A Ephrin type-A receptor 9.8 2.7E+02 0.0092 16.4 2.9 21 9-29 16-36 (38)
8 4ev6_A Magnesium transport pro 9.5 4.9E+02 0.017 23.0 6.0 22 44-65 283-304 (339)
9 2l8s_A Integrin alpha-1; trans 8.9 4.3E+02 0.015 17.0 4.2 26 67-92 7-33 (54)
10 2k1a_A Integrin alpha-IIB; sin 8.8 3.5E+02 0.012 16.3 3.1 28 9-37 13-40 (42)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=99.20 E-value=2.4e-10 Score=106.77 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=117.1
Q ss_pred HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHH
Q 019021 194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFI 272 (347)
Q Consensus 194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rli 272 (347)
.+.+.++..+.++++.++... .|+... .++..-....++.|+..|..++..+-. ..+++|........+++
T Consensus 13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 355678888888888888765 232211 122334467889999999999876521 12466777888999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 273 AGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343 (347)
Q Consensus 273 i~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il 343 (347)
++|++++++...++.+++....+++.+++|++..+.+++..+|.|.+.+.+.+.+||+++++++|+|..++
T Consensus 85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999998876
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.93 E-value=0.012 Score=54.36 Aligned_cols=70 Identities=19% Similarity=0.030 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccc--cchhHHHHHHHHHHHH
Q 019021 73 AADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQM--AVDLVVQFSVIQAIVW 144 (347)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~--~~~~~~~~~i~~~~~~ 144 (347)
....+...+.+.++|..+|.++.+++++....+. ++..|++ +|+|++...||++ ......+|...|++..
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e-~G~qNs~-lai~lA~~~F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE-VGMQNSG-LAAALAAAHFAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHCCCHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhh-hhhccHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 3334455667788999999988877665545563 5678885 9999999999643 3335667777765553
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=15.78 E-value=1.5e+02 Score=16.11 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 019021 7 VYKVVVAMVPLYVALMLGYGSVK 29 (347)
Q Consensus 7 ~~~~~~~i~pi~~ii~iG~~~~k 29 (347)
.++++..++.++..++.||.+-|
T Consensus 5 iweviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 5 IWEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888889999998743
No 4
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=14.09 E-value=5.8e+02 Score=22.15 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhc----cccChHHhHHHHHHHHHHHhHHHHHH
Q 019021 4 WEDVYKVVVAMVPLYVALMLGYGSVKWW----RIFTLEQCDAINRLVCYFTLPLFTVE 57 (347)
Q Consensus 4 ~~~~~~~~~~i~pi~~ii~iG~~~~k~~----~~~~~~~~~~ls~lv~~i~lP~lif~ 57 (347)
|+++.-+--.+.++......||+..-|. .+-++|+.|..-++..++..=+.-++
T Consensus 89 WM~ll~~e~~le~~~~~~l~g~lWkTRdr~l~~ltP~eE~rR~~~l~~wl~vy~~avY 146 (289)
T 1yew_C 89 WMNFLYTEIVLEIVTASILWGYLWKTRDRNLAALTPREELRRNFTHLVWLVAYAWAIY 146 (289)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCCSCCSSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecccccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666677788999999999983222 35567788888888888877776665
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=12.36 E-value=8.4e+02 Score=22.68 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=54.7
Q ss_pred HHHHHHhchhhhhchh--hhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCC-h---hHHHHHhHHhccChhhHHHHHHH
Q 019021 239 GTAMFSMGIFMASQEK--LIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLH-G---DVLRVAIIQAALPQSITSFIFAK 312 (347)
Q Consensus 239 plaL~~lG~~l~~~~~--~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~-~---~~~~~~vl~~a~P~a~~~~i~a~ 312 (347)
-.++++=|+.....+. ..+.-+|+...+...=.++..++....+...+.. + .....+.+..+.=.+....++..
T Consensus 357 ~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~ 436 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLLR 436 (473)
T ss_dssp HHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444321 1223445666666655555555554443333410 0 11122233344555666788899
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021 313 EYGLHADVLSTAVIFGMIVSLPLMIAYFAI 342 (347)
Q Consensus 313 ~~~~d~~~aa~~i~~stlls~~t~~i~~~i 342 (347)
++|.||+.++ .-++||+.=+..+.+++.+
T Consensus 437 ~~~~DPa~~s-~p~itt~~D~~g~~~~~~~ 465 (473)
T 2zy9_A 437 RLGVDPALVS-NPLVATLSDVTGLLIYLSV 465 (473)
T ss_dssp HHTCCGGGSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCccccc-cchHHHHHHHHHHHHHHHH
Confidence 9999998885 5567777655555554443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.85 E-value=8e+02 Score=21.48 Aligned_cols=25 Identities=4% Similarity=-0.141 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHh
Q 019021 189 MKLVWLKVAMNPNAYACIFGIAWAF 213 (347)
Q Consensus 189 ~~~~~~~~~~nP~iia~~~gl~~~~ 213 (347)
.++.+++.+++|.++...++..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHH
Confidence 3456678889999887777655543
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=9.82 E-value=2.7e+02 Score=16.37 Aligned_cols=21 Identities=5% Similarity=-0.135 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 019021 9 KVVVAMVPLYVALMLGYGSVK 29 (347)
Q Consensus 9 ~~~~~i~pi~~ii~iG~~~~k 29 (347)
.++-.+..+.++.+++|++.|
T Consensus 16 iVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHee
Confidence 355566667777788887754
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=9.47 E-value=4.9e+02 Score=22.99 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHhccCCCC
Q 019021 44 RLVCYFTLPLFTVEFTAHVDPF 65 (347)
Q Consensus 44 ~lv~~i~lP~lif~~~~~~~~~ 65 (347)
+.+.-+++|..++.+++..+.+
T Consensus 283 Tiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 283 TMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHhhccCcCC
Confidence 3455678899999999987765
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.87 E-value=4.3e+02 Score=16.95 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=10.9
Q ss_pred cchhhHHHHH-HHHHHHHHHHHHHHHH
Q 019021 67 WNYRCIAADA-LSKLIIAIVLALWAKC 92 (347)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (347)
..+|.+.... .+.++..++.+.+.|.
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445544444 3333333334444343
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.76 E-value=3.5e+02 Score=16.31 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccChH
Q 019021 9 KVVVAMVPLYVALMLGYGSVKWWRIFTLE 37 (347)
Q Consensus 9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~ 37 (347)
.+.+.+..++++.++=+.+.| .|+|+++
T Consensus 13 Ii~s~l~GLllL~li~~~LwK-~GFFkR~ 40 (42)
T 2k1a_A 13 VLVGVLGGLLLLTILVLAMWK-VGFFKRN 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCcccCC
Confidence 456666677777777777755 7887654
Done!