Query 019021
Match_columns 347
No_of_seqs 126 out of 1100
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 09:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019021.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019021hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 14.0 1.3E+02 0.0096 18.0 5.1 23 43-65 9-31 (64)
2 d2e74f1 f.23.25.1 (F:1-32) Pet 9.1 1.3E+02 0.0098 15.2 3.0 19 10-28 5-23 (32)
3 d2fbha1 a.4.5.28 (A:8-144) Tra 4.4 3.7E+02 0.027 17.9 3.9 41 285-325 24-64 (137)
4 d1v54g_ f.23.2.1 (G:) Mitochon 4.4 2.2E+02 0.016 18.4 2.3 23 38-60 12-34 (84)
5 d1ku9a_ a.4.5.36 (A:) DNA-bind 4.3 3.6E+02 0.027 18.2 3.9 43 283-325 20-62 (151)
6 d2h5na1 a.287.1.2 (A:1-132) Hy 3.4 76 0.0056 21.1 -0.9 33 307-339 92-124 (132)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 2.9 9.7E+02 0.071 17.9 8.2 29 186-214 194-222 (290)
8 d3deua1 a.4.5.28 (A:2-141) Tra 2.7 6.8E+02 0.049 16.4 4.0 41 285-325 27-67 (140)
9 d1rh5b_ f.23.28.1 (B:) Preprot 2.6 5.9E+02 0.043 14.8 3.7 25 3-27 19-44 (56)
10 d2vv5a3 f.34.1.1 (A:27-112) Me 2.6 6.6E+02 0.048 15.2 9.6 31 34-64 35-65 (86)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=14.05 E-value=1.3e+02 Score=18.03 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=15.2
Q ss_pred HHHHHHHHhHHHHHHHhccCCCC
Q 019021 43 NRLVCYFTLPLFTVEFTAHVDPF 65 (347)
Q Consensus 43 s~lv~~i~lP~lif~~~~~~~~~ 65 (347)
-..+--+++|...+.++...+.+
T Consensus 9 lT~it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHhhhccCCC
Confidence 34566789999999998876543
No 2
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.15 E-value=1.3e+02 Score=15.17 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 019021 10 VVVAMVPLYVALMLGYGSV 28 (347)
Q Consensus 10 ~~~~i~pi~~ii~iG~~~~ 28 (347)
++++-+--|.++++||.++
T Consensus 5 il~aa~lsfglifvgwglg 23 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLG 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHH
Confidence 3455555677888888875
No 3
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.44 E-value=3.7e+02 Score=17.93 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=30.8
Q ss_pred cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHH
Q 019021 285 MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAV 325 (347)
Q Consensus 285 ~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i 325 (347)
.|++.....++..++..|.+.+.--+|+..+.+...++..+
T Consensus 24 ~glt~~q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v 64 (137)
T d2fbha1 24 LGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLL 64 (137)
T ss_dssp GCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHH
Confidence 47777777777666667777777789999999887766554
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.43 E-value=2.2e+02 Score=18.38 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHhHHHHHHHhc
Q 019021 38 QCDAINRLVCYFTLPLFTVEFTA 60 (347)
Q Consensus 38 ~~~~ls~lv~~i~lP~lif~~~~ 60 (347)
..+.=.++.+++.+||+++..+.
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTLN 34 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556688889999999887654
No 5
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.35 E-value=3.6e+02 Score=18.23 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHH
Q 019021 283 IAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAV 325 (347)
Q Consensus 283 ~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i 325 (347)
.-+|++....++..++...|-+.+..-+|+..|.+...++..+
T Consensus 20 ~~~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l 62 (151)
T d1ku9a_ 20 KIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSL 62 (151)
T ss_dssp HHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhCCCCcCHHHHHHHhCCCcchHHHHH
Confidence 3478999888888888777766888889999999877766543
No 6
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.43 E-value=76 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Q 019021 307 SFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAY 339 (347)
Q Consensus 307 ~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~ 339 (347)
..++|..-+.|..+.+--..+||++.++|+...
T Consensus 92 gvimasdgdiddnelalwtlistlcglptmtvm 124 (132)
T d2h5na1 92 GVIMASDGDIDDNELALWTLISTLCGLPTMTVM 124 (132)
T ss_dssp HHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCHH
T ss_pred hheeccCCCCCccHhHHHHHHHHHhCCchhHHH
Confidence 444555555666666677777788777776543
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=2.86 E-value=9.7e+02 Score=17.86 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhh
Q 019021 186 WHLMKLVWLKVAMNPNAYACIFGIAWAFV 214 (347)
Q Consensus 186 ~~~~~~~~~~~~~nP~iia~~~gl~~~~~ 214 (347)
++..++...-..+...+.+.++..+.+.-
T Consensus 194 ~~~f~~I~lPl~~p~i~~~~il~fi~~~~ 222 (290)
T d2r6gg1 194 WQAFRLVLLPLSVPILAVVFILSFIAAIT 222 (290)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhhhcc
Confidence 44445444444555556666666666554
No 8
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=2.66 E-value=6.8e+02 Score=16.39 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.5
Q ss_pred cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHH
Q 019021 285 MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAV 325 (347)
Q Consensus 285 ~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i 325 (347)
.|+++....++..+.-.+++.+.--+|+..+.+...++..+
T Consensus 27 ~glt~~~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l 67 (140)
T d3deua1 27 LELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTL 67 (140)
T ss_dssp TTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCccHHHHHHHHCCCHhHHHHHH
Confidence 37777777777767666777888888999998877665543
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.63 E-value=5.9e+02 Score=14.80 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.1
Q ss_pred chhhHHHHH-HHHHHHHHHHHHhhhh
Q 019021 3 GWEDVYKVV-VAMVPLYVALMLGYGS 27 (347)
Q Consensus 3 ~~~~~~~~~-~~i~pi~~ii~iG~~~ 27 (347)
++++|..+. ..-+.++++-++||+.
T Consensus 19 ~~~Ef~~ia~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 19 TKDEYLAVAKVTALGISLLGIIGYII 44 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776543 3345577777788886
No 10
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.56 E-value=6.6e+02 Score=15.16 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=17.7
Q ss_pred cChHHhHHHHHHHHHHHhHHHHHHHhccCCC
Q 019021 34 FTLEQCDAINRLVCYFTLPLFTVEFTAHVDP 64 (347)
Q Consensus 34 ~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~ 64 (347)
.|+...+.+++++.+...=..++..+.....
T Consensus 35 ~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi 65 (86)
T d2vv5a3 35 IDATVADFLSALVRYGIIAFTLIAALGRVGV 65 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555556666666666665555555544433
Done!