Query 019022
Match_columns 347
No_of_seqs 138 out of 1792
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.1E-39 2.4E-44 300.9 32.7 336 6-344 8-350 (358)
2 PRK11272 putative DMT superfam 100.0 6.4E-33 1.4E-37 251.7 30.1 279 11-328 8-288 (292)
3 PRK11453 O-acetylserine/cystei 100.0 1.9E-32 4.2E-37 249.4 30.0 279 12-328 5-290 (299)
4 PRK11689 aromatic amino acid e 100.0 1.5E-32 3.3E-37 249.5 26.8 284 9-328 2-290 (295)
5 PRK10532 threonine and homoser 100.0 8.8E-32 1.9E-36 244.3 30.1 283 7-334 8-290 (293)
6 PRK15430 putative chlorampheni 100.0 1.6E-30 3.4E-35 236.4 26.6 277 7-324 4-284 (296)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 2.2E-30 4.8E-35 231.4 27.1 257 23-320 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 3.2E-30 6.9E-35 235.3 27.2 288 13-333 4-301 (302)
9 PTZ00343 triose or hexose phos 100.0 1E-26 2.3E-31 215.5 29.4 284 9-326 47-349 (350)
10 PF06027 DUF914: Eukaryotic pr 100.0 1.6E-26 3.5E-31 209.2 29.5 289 18-330 20-310 (334)
11 TIGR03340 phn_DUF6 phosphonate 100.0 1.1E-26 2.4E-31 209.7 24.8 274 13-322 3-280 (281)
12 TIGR00688 rarD rarD protein. T 99.9 2.8E-25 6.2E-30 198.0 25.8 250 11-300 2-255 (256)
13 COG5006 rhtA Threonine/homoser 99.9 7.2E-24 1.6E-28 178.1 24.7 277 12-332 13-289 (292)
14 COG0697 RhaT Permeases of the 99.9 4.2E-23 9.1E-28 186.9 30.8 283 7-326 3-288 (292)
15 COG2962 RarD Predicted permeas 99.9 2.7E-22 5.9E-27 173.2 24.6 281 7-327 3-285 (293)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 8E-21 1.7E-25 171.8 24.6 274 12-325 2-288 (290)
17 KOG4510 Permease of the drug/m 99.9 4.4E-24 9.6E-29 180.4 2.7 290 10-328 37-328 (346)
18 PF08449 UAA: UAA transporter 99.9 1.3E-18 2.7E-23 158.8 28.1 281 26-331 15-303 (303)
19 KOG2765 Predicted membrane pro 99.8 1.9E-19 4E-24 159.7 15.1 232 82-333 163-398 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 3E-18 6.6E-23 153.5 15.3 289 12-333 18-315 (316)
21 KOG1580 UDP-galactose transpor 99.6 1.4E-14 3.1E-19 120.9 16.4 231 75-328 82-317 (337)
22 KOG2766 Predicted membrane pro 99.6 8.8E-16 1.9E-20 129.6 8.9 269 23-327 31-301 (336)
23 COG2510 Predicted membrane pro 99.6 2.1E-14 4.6E-19 108.7 9.7 136 11-155 3-138 (140)
24 COG2510 Predicted membrane pro 99.6 1.1E-13 2.4E-18 104.8 12.9 135 187-324 4-138 (140)
25 PF04142 Nuc_sug_transp: Nucle 99.5 9.5E-13 2.1E-17 115.5 20.3 230 74-316 13-244 (244)
26 KOG2234 Predicted UDP-galactos 99.5 1.5E-11 3.3E-16 109.9 27.8 301 11-330 15-327 (345)
27 KOG1581 UDP-galactose transpor 99.5 8E-13 1.7E-17 114.9 18.3 265 39-329 50-317 (327)
28 KOG1443 Predicted integral mem 99.5 3.2E-12 7E-17 111.1 20.0 254 40-324 45-314 (349)
29 KOG3912 Predicted integral mem 99.5 8.9E-13 1.9E-17 113.0 15.2 284 22-324 14-333 (372)
30 PF00892 EamA: EamA-like trans 99.5 3.3E-13 7.2E-18 106.3 9.5 125 196-324 1-125 (126)
31 KOG1444 Nucleotide-sugar trans 99.4 8.9E-11 1.9E-15 103.5 23.8 289 11-332 12-307 (314)
32 PF00892 EamA: EamA-like trans 99.4 4.7E-13 1E-17 105.4 8.4 123 21-155 1-125 (126)
33 PF06800 Sugar_transport: Suga 99.2 4.6E-09 9.9E-14 92.1 22.0 252 38-322 10-268 (269)
34 TIGR00950 2A78 Carboxylate/Ami 99.2 6.8E-10 1.5E-14 99.0 15.0 132 8-151 125-259 (260)
35 PF13536 EmrE: Multidrug resis 99.1 9.9E-11 2.1E-15 90.7 6.6 103 45-155 2-105 (113)
36 PF03151 TPT: Triose-phosphate 99.1 1.1E-09 2.5E-14 89.5 13.0 138 187-325 1-153 (153)
37 PRK15430 putative chlorampheni 99.1 1.7E-09 3.8E-14 98.4 14.6 138 183-324 5-144 (296)
38 TIGR03340 phn_DUF6 phosphonate 99.1 3.2E-09 7E-14 95.9 15.4 134 188-326 3-136 (281)
39 KOG4314 Predicted carbohydrate 99.0 1.2E-09 2.7E-14 89.3 9.0 216 85-327 60-278 (290)
40 TIGR00688 rarD rarD protein. T 99.0 5E-09 1.1E-13 93.3 13.7 136 186-324 2-141 (256)
41 KOG1442 GDP-fucose transporter 99.0 1.7E-09 3.8E-14 92.8 8.8 280 26-332 43-334 (347)
42 PRK13499 rhamnose-proton sympo 99.0 3.1E-07 6.7E-12 83.9 23.2 301 8-326 4-342 (345)
43 KOG1583 UDP-N-acetylglucosamin 99.0 1.1E-08 2.5E-13 88.0 12.5 241 71-324 60-313 (330)
44 KOG1582 UDP-galactose transpor 99.0 3.3E-08 7.1E-13 84.9 14.9 228 76-328 104-335 (367)
45 PRK10532 threonine and homoser 98.9 3.1E-08 6.8E-13 90.0 14.5 134 9-155 146-280 (293)
46 PRK02971 4-amino-4-deoxy-L-ara 98.9 4E-08 8.7E-13 77.3 12.8 122 187-329 3-126 (129)
47 PRK11272 putative DMT superfam 98.9 4.6E-08 1E-12 88.8 14.3 136 9-155 148-284 (292)
48 PLN00411 nodulin MtN21 family 98.8 8.8E-08 1.9E-12 89.0 14.2 138 186-325 13-156 (358)
49 PRK11689 aromatic amino acid e 98.8 8.5E-08 1.8E-12 87.3 13.8 132 10-155 155-286 (295)
50 COG5070 VRG4 Nucleotide-sugar 98.8 3.8E-08 8.1E-13 82.2 9.5 262 41-331 38-302 (309)
51 PF13536 EmrE: Multidrug resis 98.8 4E-08 8.6E-13 76.0 9.1 108 221-329 3-110 (113)
52 TIGR00803 nst UDP-galactose tr 98.8 6.3E-08 1.4E-12 84.3 10.7 207 103-323 3-222 (222)
53 PF05653 Mg_trans_NIPA: Magnes 98.7 5.6E-07 1.2E-11 81.5 16.2 229 80-327 51-294 (300)
54 PRK11453 O-acetylserine/cystei 98.7 4.5E-07 9.8E-12 82.7 15.2 127 188-326 6-133 (299)
55 PF03151 TPT: Triose-phosphate 98.6 1.4E-06 3E-11 71.1 12.8 133 12-153 1-150 (153)
56 TIGR00817 tpt Tpt phosphate/ph 98.5 1.9E-06 4.2E-11 78.6 13.8 121 200-324 16-136 (302)
57 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.3E-06 2.8E-11 67.1 9.7 68 257-324 41-108 (111)
58 COG2962 RarD Predicted permeas 98.5 2.6E-06 5.7E-11 74.6 12.4 138 185-325 6-144 (293)
59 PTZ00343 triose or hexose phos 98.5 8.1E-06 1.8E-10 76.0 16.3 136 188-325 51-186 (350)
60 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.9E-06 6.2E-11 77.0 12.7 129 10-155 151-287 (290)
61 PRK15051 4-amino-4-deoxy-L-ara 98.3 4.3E-06 9.4E-11 64.2 9.1 65 85-155 43-108 (111)
62 KOG2922 Uncharacterized conser 98.3 4.9E-06 1.1E-10 73.8 10.2 278 6-330 16-311 (335)
63 COG0697 RhaT Permeases of the 98.2 5.7E-05 1.2E-09 68.0 15.8 142 184-329 5-147 (292)
64 COG4975 GlcU Putative glucose 98.2 2.5E-07 5.5E-12 78.6 -0.7 272 12-323 3-283 (288)
65 PF06027 DUF914: Eukaryotic pr 98.2 5.3E-05 1.1E-09 69.4 13.7 142 6-156 163-305 (334)
66 PRK10452 multidrug efflux syst 98.0 3E-05 6.5E-10 60.0 8.1 71 258-328 35-106 (120)
67 COG5006 rhtA Threonine/homoser 98.0 0.00015 3.4E-09 62.2 11.8 137 7-155 144-281 (292)
68 PRK09541 emrE multidrug efflux 97.9 7.1E-05 1.5E-09 57.1 8.0 69 259-327 36-105 (110)
69 PF08449 UAA: UAA transporter 97.9 0.00039 8.5E-09 63.5 14.2 130 199-334 13-145 (303)
70 PRK02971 4-amino-4-deoxy-L-ara 97.8 0.00027 6E-09 55.6 10.8 116 12-155 3-121 (129)
71 PF06800 Sugar_transport: Suga 97.8 0.00034 7.4E-09 61.7 11.0 133 7-151 134-266 (269)
72 PF04657 DUF606: Protein of un 97.7 0.00079 1.7E-08 53.8 12.0 132 187-322 2-138 (138)
73 KOG4510 Permease of the drug/m 97.7 1.3E-05 2.7E-10 69.2 1.6 137 183-327 35-171 (346)
74 PF06379 RhaT: L-rhamnose-prot 97.7 0.012 2.6E-07 53.4 20.4 302 8-325 4-340 (344)
75 PF05653 Mg_trans_NIPA: Magnes 97.7 0.00019 4.1E-09 65.2 8.3 120 181-325 2-122 (300)
76 COG2076 EmrE Membrane transpor 97.6 0.00026 5.5E-09 53.0 7.3 66 262-327 39-105 (106)
77 PRK10650 multidrug efflux syst 97.6 0.0011 2.4E-08 50.4 10.6 65 260-324 42-107 (109)
78 PRK11431 multidrug efflux syst 97.5 0.00043 9.4E-09 52.3 7.5 66 260-325 36-102 (105)
79 PF04657 DUF606: Protein of un 97.4 0.0026 5.6E-08 50.8 11.2 131 14-153 4-138 (138)
80 PF00893 Multi_Drug_Res: Small 97.3 0.002 4.4E-08 47.7 8.5 57 260-316 36-93 (93)
81 COG3238 Uncharacterized protei 97.3 0.0088 1.9E-07 47.9 12.1 139 186-327 5-148 (150)
82 PRK10650 multidrug efflux syst 97.2 0.004 8.6E-08 47.3 9.3 68 81-154 38-106 (109)
83 PF04142 Nuc_sug_transp: Nucle 97.2 0.0015 3.3E-08 57.5 7.9 79 251-330 16-94 (244)
84 PRK10452 multidrug efflux syst 97.1 0.0012 2.6E-08 51.1 5.8 68 82-155 34-102 (120)
85 COG2076 EmrE Membrane transpor 97.1 0.0014 3.1E-08 49.1 5.5 68 82-155 34-102 (106)
86 PRK11431 multidrug efflux syst 96.9 0.003 6.6E-08 47.7 6.3 67 83-155 34-101 (105)
87 COG4975 GlcU Putative glucose 96.9 0.00062 1.3E-08 58.4 2.6 137 187-333 3-144 (288)
88 PRK09541 emrE multidrug efflux 96.9 0.003 6.6E-08 48.2 6.2 62 88-155 40-102 (110)
89 PRK13499 rhamnose-proton sympo 96.9 0.034 7.3E-07 51.3 13.8 147 7-155 170-340 (345)
90 PF10639 UPF0546: Uncharacteri 96.8 0.0032 7E-08 47.9 5.6 110 17-154 2-112 (113)
91 KOG2234 Predicted UDP-galactos 96.7 0.087 1.9E-06 48.0 15.0 137 195-332 24-171 (345)
92 PF07857 DUF1632: CEO family ( 96.7 0.016 3.5E-07 51.0 10.1 187 12-211 1-208 (254)
93 COG3238 Uncharacterized protei 96.6 0.045 9.8E-07 43.9 11.0 139 10-154 4-144 (150)
94 PF10639 UPF0546: Uncharacteri 96.3 0.015 3.3E-07 44.3 6.6 107 194-322 4-111 (113)
95 KOG1441 Glucose-6-phosphate/ph 96.3 0.01 2.3E-07 53.9 6.7 139 9-155 161-306 (316)
96 PF00893 Multi_Drug_Res: Small 96.1 0.016 3.4E-07 42.9 5.4 54 87-146 38-92 (93)
97 KOG2765 Predicted membrane pro 95.6 0.066 1.4E-06 49.0 8.2 140 7-155 243-389 (416)
98 TIGR00803 nst UDP-galactose tr 94.7 0.17 3.8E-06 43.8 8.2 67 81-153 155-221 (222)
99 KOG2922 Uncharacterized conser 94.1 0.026 5.7E-07 50.6 1.8 121 181-325 16-136 (335)
100 KOG1580 UDP-galactose transpor 94.0 0.065 1.4E-06 45.9 3.7 75 75-155 238-312 (337)
101 PF06379 RhaT: L-rhamnose-prot 93.9 0.56 1.2E-05 42.8 9.8 142 182-326 3-154 (344)
102 KOG4314 Predicted carbohydrate 93.1 0.05 1.1E-06 45.3 1.6 63 265-327 65-127 (290)
103 KOG1581 UDP-galactose transpor 92.9 2.7 5.8E-05 37.8 12.1 141 8-155 169-312 (327)
104 PF07857 DUF1632: CEO family ( 92.9 0.22 4.7E-06 43.9 5.4 129 187-327 1-136 (254)
105 COG5070 VRG4 Nucleotide-sugar 90.5 1.1 2.3E-05 38.4 6.8 136 12-155 156-295 (309)
106 KOG1444 Nucleotide-sugar trans 90.4 8.5 0.00018 34.9 12.7 118 199-324 25-148 (314)
107 KOG3912 Predicted integral mem 87.2 0.76 1.6E-05 40.7 3.7 64 262-325 95-158 (372)
108 PRK02237 hypothetical protein; 83.3 6.7 0.00014 29.5 6.6 45 283-327 63-107 (109)
109 PF05977 MFS_3: Transmembrane 81.3 55 0.0012 32.4 14.4 17 284-300 351-367 (524)
110 PF02694 UPF0060: Uncharacteri 79.0 3.6 7.8E-05 30.8 4.0 46 283-328 61-106 (107)
111 KOG4831 Unnamed protein [Funct 78.2 4.3 9.4E-05 30.3 4.1 59 266-324 65-124 (125)
112 PF04342 DUF486: Protein of un 73.9 3.6 7.8E-05 30.7 2.8 31 294-324 77-107 (108)
113 KOG1442 GDP-fucose transporter 71.7 15 0.00032 32.8 6.5 140 9-156 183-327 (347)
114 KOG2766 Predicted membrane pro 67.1 1.1 2.4E-05 39.2 -1.3 129 186-326 22-151 (336)
115 COG3169 Uncharacterized protei 65.1 15 0.00033 27.0 4.4 32 294-325 84-115 (116)
116 KOG1443 Predicted integral mem 63.6 1.2E+02 0.0026 27.7 10.6 70 257-327 89-158 (349)
117 PF05297 Herpes_LMP1: Herpesvi 62.8 2.4 5.3E-05 37.5 0.0 32 181-213 102-133 (381)
118 COG1742 Uncharacterized conser 61.8 27 0.00059 26.1 5.2 45 283-327 62-106 (109)
119 COG4657 RnfA Predicted NADH:ub 61.5 57 0.0012 26.6 7.4 54 181-234 127-185 (193)
120 TIGR00905 2A0302 transporter, 58.0 1.9E+02 0.004 28.1 17.8 45 284-329 393-438 (473)
121 PF06570 DUF1129: Protein of u 55.0 1.3E+02 0.0029 25.5 12.1 33 74-106 142-174 (206)
122 KOG1582 UDP-galactose transpor 53.4 67 0.0015 28.7 7.2 112 37-155 217-331 (367)
123 KOG4831 Unnamed protein [Funct 52.2 40 0.00086 25.3 4.8 113 13-155 5-124 (125)
124 COG3086 RseC Positive regulato 50.0 8 0.00017 30.7 0.9 28 273-300 68-95 (150)
125 PF09656 PGPGW: Putative trans 48.7 49 0.0011 21.5 4.3 45 140-211 5-49 (53)
126 COG1971 Predicted membrane pro 44.6 30 0.00064 29.1 3.5 43 283-325 44-87 (190)
127 PRK02237 hypothetical protein; 44.2 93 0.002 23.5 5.7 37 113-155 68-104 (109)
128 PF07168 Ureide_permease: Urei 44.2 14 0.0003 33.4 1.6 132 16-153 1-143 (336)
129 PF11044 TMEMspv1-c74-12: Plec 41.2 11 0.00023 23.2 0.4 16 306-321 3-18 (49)
130 PRK06638 NADH:ubiquinone oxido 40.6 2.3E+02 0.0049 24.0 12.7 41 294-334 133-175 (198)
131 PF07168 Ureide_permease: Urei 37.3 13 0.00029 33.5 0.5 129 192-322 2-143 (336)
132 PRK11469 hypothetical protein; 36.3 34 0.00074 28.8 2.8 43 282-324 43-86 (188)
133 COG1742 Uncharacterized conser 36.0 26 0.00056 26.2 1.7 22 135-156 83-104 (109)
134 PF15102 TMEM154: TMEM154 prot 34.7 36 0.00079 27.2 2.5 20 312-331 68-87 (146)
135 PF02694 UPF0060: Uncharacteri 34.2 26 0.00057 26.3 1.5 37 113-155 66-102 (107)
136 COG4854 Predicted membrane pro 33.9 1.1E+02 0.0025 23.1 4.8 56 135-212 69-124 (126)
137 KOG1583 UDP-N-acetylglucosamin 33.6 40 0.00087 30.2 2.8 66 267-332 78-144 (330)
138 PRK11902 ampG muropeptide tran 32.6 4.1E+02 0.0089 24.7 15.0 20 306-325 369-388 (402)
139 PF04246 RseC_MucC: Positive r 32.2 24 0.00052 27.8 1.2 42 277-319 65-109 (135)
140 PF01102 Glycophorin_A: Glycop 31.5 27 0.00059 27.1 1.3 8 312-319 76-83 (122)
141 COG4858 Uncharacterized membra 30.9 3.2E+02 0.007 22.9 10.6 111 14-133 103-219 (226)
142 PRK10862 SoxR reducing system 30.3 25 0.00053 28.6 0.9 20 280-299 75-94 (154)
143 PRK13108 prolipoprotein diacyl 29.1 2.8E+02 0.006 27.0 7.9 22 305-326 254-275 (460)
144 COG3965 Predicted Co/Zn/Cd cat 28.5 4.3E+02 0.0093 23.6 11.9 109 17-130 100-213 (314)
145 PF02487 CLN3: CLN3 protein; 27.6 5.5E+02 0.012 24.5 9.6 72 79-155 3-107 (402)
146 PF07226 DUF1422: Protein of u 27.3 2.9E+02 0.0062 21.2 9.3 110 1-130 1-111 (117)
147 PF11381 DUF3185: Protein of u 26.2 29 0.00063 23.1 0.6 16 140-155 1-16 (59)
148 TIGR01167 LPXTG_anchor LPXTG-m 26.1 85 0.0018 17.7 2.5 16 306-321 11-26 (34)
149 TIGR02840 spore_YtaF putative 24.6 78 0.0017 27.0 3.0 47 278-324 32-80 (206)
150 PF08693 SKG6: Transmembrane a 23.6 60 0.0013 19.7 1.5 18 311-328 21-38 (40)
151 PF06946 Phage_holin_5: Phage 23.3 3.1E+02 0.0067 20.2 6.4 55 271-325 22-80 (93)
152 PF05961 Chordopox_A13L: Chord 23.1 1E+02 0.0022 21.0 2.7 16 309-324 6-21 (68)
153 KOG1623 Multitransmembrane pro 23.0 4.9E+02 0.011 22.9 7.6 51 181-231 123-176 (243)
154 COG4858 Uncharacterized membra 22.6 4.7E+02 0.01 22.0 8.8 25 185-209 193-217 (226)
155 PF15108 TMEM37: Voltage-depen 21.9 2.7E+02 0.0059 22.6 5.3 80 140-234 91-172 (184)
156 PHA03049 IMV membrane protein; 21.7 1.1E+02 0.0024 20.8 2.6 15 310-324 7-21 (68)
157 TIGR02865 spore_II_E stage II 21.4 9.6E+02 0.021 25.1 15.4 45 104-154 10-54 (764)
158 PF09529 Intg_mem_TP0381: Inte 21.1 5.2E+02 0.011 22.0 13.7 58 89-155 52-110 (225)
159 PF10101 DUF2339: Predicted me 21.1 9.2E+02 0.02 24.8 28.7 94 26-128 18-114 (745)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=300.90 Aligned_cols=336 Identities=43% Similarity=0.739 Sum_probs=262.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHH
Q 019022 6 SYKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLS 85 (347)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (347)
+.++.++++.|+...+.++...++.|.+++.+++|..+.++|+.+++++++++ ++.++++ ++.++.+++++..+.+.|
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~-~~~~~~~-~~~~~~~~~~~~~l~l~g 85 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPS-LFFTNRS-RSLPPLSVSILSKIGLLG 85 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHH-HHHHHHh-cccCcchHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999998 7664221 222444577888899999
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccC
Q 019022 86 LVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMST 165 (347)
Q Consensus 86 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~ 165 (347)
++++.++.+++.|++|+++++++++.++.|+++++++++++.|+++.++|+++++++|++++++|+.++...+++.....
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~ 165 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA 165 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 99877788999999999999999999999999999999997666666666688899999999999998874333221110
Q ss_pred CC-CCcccC-CC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccc-c
Q 019022 166 AS-IPAQSL-HW-TPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESN-L 241 (347)
Q Consensus 166 ~~-~~~~~~-~~-~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 241 (347)
++ ...+.. +. .......+...|+.++++++++|++|++.+|+..+++++....+++.+.++.+.+.+.....+.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~ 245 (358)
T PLN00411 166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245 (358)
T ss_pred cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 00 000000 00 01112334577999999999999999999999999997566777777777777777766665532 2
Q ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhh
Q 019022 242 SAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFY 321 (347)
Q Consensus 242 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~ 321 (347)
..|....+.....+++.++. +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+.|++
T Consensus 246 ~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 246 SVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred ccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 23322233344557777775 56899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccccCCC---CCCCCCCCC
Q 019022 322 TVLWGKANDEAGKN---KDSCKIPLL 344 (347)
Q Consensus 322 l~~~~~~~~~~~~~---~~~~~~~~l 344 (347)
+..++++||.+.++ ++++..|++
T Consensus 325 l~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (358)
T PLN00411 325 AVMWGKANEEKDQLLSFSGKEKTPLL 350 (358)
T ss_pred HHHhhhhhhhhhcccCccccccchhh
Confidence 99987776655554 334445543
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=251.71 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH-H
Q 019022 11 ALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG-S 89 (347)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 89 (347)
.-.+..+...++||.++++.|... ++++|.+++++|+.++.++++++ ... ++ ++ ..++++++.....|.++ .
T Consensus 8 ~~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~-~~~-~~--~~--~~~~~~~~~~~~~g~~~~~ 80 (292)
T PRK11272 8 PLFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAF-LLL-RG--HP--LPTLRQWLNAALIGLLLLA 80 (292)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHH-HHH-hC--CC--CCcHHHHHHHHHHHHHHHH
Confidence 344557778899999999999996 69999999999999999998888 654 22 22 12466788888888887 7
Q ss_pred HHHHHHHhhh-hccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCC
Q 019022 90 FFRILGYTGI-AYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASI 168 (347)
Q Consensus 90 ~~~~~~~~al-~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~ 168 (347)
.++.+++.+. +++++++++++.++.|+++.+++.+ +|||+ ++++++|++++++|+.++. .+++
T Consensus 81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~------~~~~~~~~~la~~Gv~ll~-~~~~-------- 144 (292)
T PRK11272 81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRT------RKLEWLGIAIGLAGIVLLN-SGGN-------- 144 (292)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccC------chhHHHHHHHHHHhHHHHh-cCcc--------
Confidence 7888899999 9999999999999999999999986 69999 6669999999999998875 1111
Q ss_pred CcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccC
Q 019022 169 PAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKP 248 (347)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (347)
.+....|+.++++++++||.+.+..|+..++ + +...+.+.+..+++.+.+.....+.+.... .+
T Consensus 145 ------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 208 (292)
T PRK11272 145 ------------LSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTAL--PT 208 (292)
T ss_pred ------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCccccc--CC
Confidence 1122469999999999999999999997543 3 455667788888888888776554322111 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCc
Q 019022 249 DIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 328 (347)
Q Consensus 249 ~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~ 328 (347)
...|..+++++++++++++.+|++++++.++++++.+.++||+++.+++++++||++++.+++|+++++.|+++..+.++
T Consensus 209 ~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 209 LSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999988876554
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=1.9e-32 Score=249.35 Aligned_cols=279 Identities=13% Similarity=0.104 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH-HH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG-SF 90 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 90 (347)
..+..++++++||.+++++|... ++++|..++++|+.++++.++++ .. ++ + .+ +......|++. ..
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~-~~--~~---~---~~---~~~~~~~g~~~~~~ 71 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFF-VA--RP---K---VP---LNLLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHH-hc--CC---C---Cc---hHHHHHHHHHHHHH
Confidence 34668889999999999999997 68999999999999988766655 31 21 1 11 12344456655 55
Q ss_pred HHHHHHhhhhc-cChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCC
Q 019022 91 FRILGYTGIAY-SSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIP 169 (347)
Q Consensus 91 ~~~~~~~al~~-~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~ 169 (347)
...+++.+++| .++++++++.+++|+++.+++++++|||+ +++++++++++++|+.++. ..+.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~------~~~~~~~~~l~~~Gv~ll~-~~~~--------- 135 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERL------QGKQLAGIALAIFGVLVLI-EDSL--------- 135 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHhHHHhc-cccC---------
Confidence 66677889998 58899999999999999999999999999 6669999999999998887 2111
Q ss_pred cccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hHHHHHHHHHHHHHHHHHHHHhccccc---ccc
Q 019022 170 AQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPA--EFVVTLLYCLFATIISAPICFVGESNL---SAW 244 (347)
Q Consensus 170 ~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 244 (347)
+..+....|+.+++.++++|+.|.+..|+..++.++ ......+.+..+.+.........+++. ..+
T Consensus 136 ---------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (299)
T PRK11453 136 ---------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL 206 (299)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 011223469999999999999999999998766542 234445555555554444444443321 111
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 245 RLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 245 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
...+...|..++++++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|+.|+++..
T Consensus 207 ~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 207 VTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 11234578999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCc
Q 019022 325 WGKA 328 (347)
Q Consensus 325 ~~~~ 328 (347)
++++
T Consensus 287 ~~~~ 290 (299)
T PRK11453 287 FGLR 290 (299)
T ss_pred cchh
Confidence 7654
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1.5e-32 Score=249.52 Aligned_cols=284 Identities=12% Similarity=0.093 Sum_probs=213.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG 88 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (347)
+.++.+.++.+.++||.+++..|..+ ++++|..+.++|+.++.+++.++ .. ++ + .+++.++ ..+.+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~-~~--~~--~----~~~~~~~-~~~~~~l~ 70 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLT-VG--FP--R----LRQFPKR-YLLAGGLL 70 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHH-cc--cc--c----cccccHH-HHHHHhHH
Confidence 45678889999999999999999996 68999999999999999988876 31 11 1 1122222 33444444
Q ss_pred -HHHHHHHHhhhhc----cChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccc
Q 019022 89 -SFFRILGYTGIAY----SSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIM 163 (347)
Q Consensus 89 -~~~~~~~~~al~~----~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~ 163 (347)
..++.+++.+++| +++++++++.++.|+++.+++++++|||+ +++++.|++++++|+.++. ..++ ..
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~------~~~~~~g~~l~~~Gv~li~-~~~~-~~ 142 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKA------NWLLIPGLLLALAGVAWVL-GGDN-GL 142 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHhHhhee-cCCc-cc
Confidence 7788888888765 57788899999999999999999999999 6669999999999998887 2211 00
Q ss_pred cCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 019022 164 STASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSA 243 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
... + .. .+..+...|+.++++++++||.|+++.|+..++.+ +..... ..+.+.+.+.....+.....
T Consensus 143 ~~~-------~-~~-~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~~~ 209 (295)
T PRK11689 143 SLA-------E-LI-NNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFLSPQPAMV 209 (295)
T ss_pred hhh-------h-hh-hccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHHhcCcccc
Confidence 000 0 00 01112346999999999999999999999877665 655432 22333333333333221111
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhh
Q 019022 244 WRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 323 (347)
Q Consensus 244 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~ 323 (347)
+ +...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++.
T Consensus 210 ~---~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 210 F---SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred C---CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 1 3346777778775 88999999999999999999999999999999999999999999999999999999998877
Q ss_pred hccCc
Q 019022 324 LWGKA 328 (347)
Q Consensus 324 ~~~~~ 328 (347)
...++
T Consensus 286 ~~~~~ 290 (295)
T PRK11689 286 WLATR 290 (295)
T ss_pred hhhHh
Confidence 65443
No 5
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=8.8e-32 Score=244.26 Aligned_cols=283 Identities=14% Similarity=0.048 Sum_probs=226.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
.++.++...+++++++|+.+..+.|.+. ++++|.++.++|+.++.++++++ ... ++ ++.++++++..+..|.
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~-~~~-~~-----~~~~~~~~~~~~~~g~ 79 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAI-FKP-WR-----LRFAKEQRLPLLFYGV 79 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHH-HhH-Hh-----ccCCHHHHHHHHHHHH
Confidence 4568899999999999999999999997 47999999999999999888877 432 22 2235677888888998
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCC
Q 019022 87 VGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTA 166 (347)
Q Consensus 87 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~ 166 (347)
+....+.+++++++|++++.++++..+.|+++.+++. |+. + +..++.++++|+.++. ..+..
T Consensus 80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~------~--~~~~~~i~~~Gv~li~-~~~~~----- 141 (293)
T PRK10532 80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRP------V--DFVWVVLAVLGLWFLL-PLGQD----- 141 (293)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CCh------H--HHHHHHHHHHHHheee-ecCCC-----
Confidence 8888888999999999999999999999999998863 433 2 3456778899988776 22210
Q ss_pred CCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 019022 167 SIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRL 246 (347)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (347)
..+....|+.++++++++||.|.+..|+..++.+ +.... +...++++.+.+.....+.. ..+
T Consensus 142 -------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~-- 203 (293)
T PRK10532 142 -------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATVA-IGSLIAALIFVPIGALQAGE-ALW-- 203 (293)
T ss_pred -------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHHH-HHHHHHHHHHHHHHHHccCc-ccC--
Confidence 1122346999999999999999999999987766 65554 45566677777766554321 111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhcc
Q 019022 247 KPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 247 ~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 326 (347)
+...|...+++|+++++++|.+|++++++.++++++.+.++||+++.+++++++||+++..+++|+++|++|.+...+.
T Consensus 204 -~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 204 -HWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 2235666789999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred CcccccCC
Q 019022 327 KANDEAGK 334 (347)
Q Consensus 327 ~~~~~~~~ 334 (347)
.+++.|.+
T Consensus 283 ~~~~~~~~ 290 (293)
T PRK10532 283 IRREPKIK 290 (293)
T ss_pred CCCCCCCC
Confidence 65554443
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=1.6e-30 Score=236.43 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=205.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCC-C-CCchhHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASL-P-LFKFPVISRICFL 84 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 84 (347)
+++.++.+.+++++++||.+++..|.. ++++|.++.++|+.++.++++++ ...+++ ++.. + ..+++.+.... .
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-~ 78 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVL-MSICRQ-WSYLKTLIQTPQKIFMLA-V 78 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHH-HHHHcc-HHHHHHHHcCHHHHHHHH-H
Confidence 467789999999999999999999986 47999999999999999888777 554221 0110 0 11233333333 5
Q ss_pred HHHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccc
Q 019022 85 SLVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIM 163 (347)
Q Consensus 85 g~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~ 163 (347)
+.++ +.++.++++|++++++++++++.++.|+++.+++++++|||+ +++++.|++++++|+.++.. .+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~------~~~~~~g~~l~~~Gv~li~~-~~---- 147 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERF------RRMQWLAVILAICGVLVQLW-TF---- 147 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHH-Hc----
Confidence 5555 889999999999999999999999999999999999999999 66699999999999998861 10
Q ss_pred cCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019022 164 STASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLS 242 (347)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
++. ..++++++++||.|++..|+..++.. +....+.+...++.....+.. +....
T Consensus 148 -----------------~~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 203 (296)
T PRK15430 148 -----------------GSL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTS 203 (296)
T ss_pred -----------------CCc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcc
Confidence 010 14688899999999999988753221 123334444444443322221 11111
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhh
Q 019022 243 AWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 243 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l 322 (347)
.+...+...+..+...++ ++.+++.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+
T Consensus 204 ~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v 282 (296)
T PRK15430 204 HMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI 282 (296)
T ss_pred cccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 111111112333444454 7889999999999999999999999999999999999999999999999999999888666
Q ss_pred hh
Q 019022 323 VL 324 (347)
Q Consensus 323 ~~ 324 (347)
..
T Consensus 283 ~~ 284 (296)
T PRK15430 283 FV 284 (296)
T ss_pred HH
Confidence 54
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=2.2e-30 Score=231.44 Aligned_cols=257 Identities=17% Similarity=0.223 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH-HHHHHHHHhhhhc
Q 019022 23 IVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG-SFFRILGYTGIAY 101 (347)
Q Consensus 23 ~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~ 101 (347)
||.+++..|..++++.|+....+.|...+.+++.++ ... + .+++++......|.++ ..++.+++.|++|
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~-~~~-----~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPL-LRR-----R----PPLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHh-----c----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999998767999999999999888887776 432 1 2345666777888777 9999999999999
Q ss_pred cChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCC
Q 019022 102 SSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTR 181 (347)
Q Consensus 102 ~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~ 181 (347)
+++++++++.++.|+++.+++.+++|||+ +++++.|++++++|+.++. ..++ .
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~------~~~~~~gi~i~~~Gv~li~-~~~~--------------------~ 123 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERP------RKLVLLAAVLGLAGAVLLL-SDGN--------------------L 123 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCC------cHHHHHHHHHHHHhHHhhc-cCCc--------------------c
Confidence 99999999999999999999999999999 6669999999999998876 2211 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHH
Q 019022 182 SRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAF 260 (347)
Q Consensus 182 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ 260 (347)
+....|+.++++++++|+.+.+..|+..++.+ ++.....+.+..+.+.+.+.....+... .. +...|..+++.++
T Consensus 124 ~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~ 199 (260)
T TIGR00950 124 SINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGL 199 (260)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHH
Confidence 23467999999999999999999999987765 2345555778888888888876654322 11 3457888999999
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhh
Q 019022 261 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGF 320 (347)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~ 320 (347)
+++++++.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++++.|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999885
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.98 E-value=3.2e-30 Score=235.32 Aligned_cols=288 Identities=15% Similarity=0.076 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 019022 13 FTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFR 92 (347)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (347)
....+...++-....+.+|.++++...|...+++|+..+.+...+. .....+ ++ ++.++++++..+..|++++.++
T Consensus 4 ~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 4 GLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLP--KR-LKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCC--CC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555666666667899998644779999999999887765544 221112 23 4467889999999999998889
Q ss_pred HHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCccc
Q 019022 93 ILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQS 172 (347)
Q Consensus 93 ~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~ 172 (347)
.+.+.|++|++++.++++.++.|+++++++++++|||+ +++++.|+++++.|+.+.. .++
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~------~~~~~~~l~l~~~Gv~l~~--~~~------------ 139 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEF------PSTLWLSLLPIVGGVALAS--DTE------------ 139 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHhhhc--CCc------------
Confidence 99999999999999999999999999999999999999 6669999999999997654 111
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCchHHHHHHHHHHHHHHHHHHHHhccccc-c--cccc-
Q 019022 173 LHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMK--LYPAEFVVTLLYCLFATIISAPICFVGESNL-S--AWRL- 246 (347)
Q Consensus 173 ~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~- 246 (347)
.+....|+.++++++++|+++.+..|+..+ +.+ +.+.+.+++..+++.+.|.....++.. . .+..
T Consensus 140 --------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~ 210 (302)
T TIGR00817 140 --------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQA 210 (302)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHh
Confidence 122356999999999999999999999887 555 899999999999999999887665421 0 0100
Q ss_pred ----cCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhh
Q 019022 247 ----KPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 247 ----~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l 322 (347)
.....+......+..+....+.++++++++.+|+++++..+++|+++++++++++||+++..+++|+++++.|+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l 290 (302)
T TIGR00817 211 ISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL 290 (302)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence 0011122122333323333345666899999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccC
Q 019022 323 VLWGKANDEAG 333 (347)
Q Consensus 323 ~~~~~~~~~~~ 333 (347)
+.+.|++++++
T Consensus 291 ~~~~k~~~~~~ 301 (302)
T TIGR00817 291 YSRVKAQKPKP 301 (302)
T ss_pred HHHHhccCcCC
Confidence 98776555443
No 9
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=1e-26 Score=215.46 Aligned_cols=284 Identities=17% Similarity=0.121 Sum_probs=224.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC--chhHHHHHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLATSKGMS-YFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLF--KFPVISRICFLS 85 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g 85 (347)
+.+....++....+-......+|.++ +.++ |..++.+|++++.++...+ .....+ ++ ++. .+++++.++..|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~-~~~~~~--~~-~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLY-WATGFR--KI-PRIKSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHH-HHhCCC--CC-CCCCCHHHHHHHHHHHH
Confidence 55666667777777777888899998 4689 9999999999998776554 332112 22 323 345788999999
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccC
Q 019022 86 LVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMST 165 (347)
Q Consensus 86 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~ 165 (347)
+++...+...+.|+++++++.++++.++.|+++++++++++|||+ +++++.++++++.|+.+... ++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~------s~~~~l~l~l~v~Gv~l~~~--~~----- 188 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFL------NLYAYLSLIPIVGGVALASV--KE----- 188 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHHHHheec--cc-----
Confidence 999656777889999999999999999999999999999999999 66699999999999999761 11
Q ss_pred CCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC------chHHHHHHHHHHHHHHHHHHHHhccc
Q 019022 166 ASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP------AEFVVTLLYCLFATIISAPICFVGES 239 (347)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (347)
.+....|++++++|+++|+++++..|+..++++ ++.+...+....+.++++|+....|.
T Consensus 189 ---------------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 189 ---------------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222457999999999999999999999987642 35566777788999999998876653
Q ss_pred c--ccccc----ccCchhHHHHHHHHHHHHHHHHHHHHH----HhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhh
Q 019022 240 N--LSAWR----LKPDIELASIVYSAFFGLSFITVVHTF----GLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGS 309 (347)
Q Consensus 240 ~--~~~~~----~~~~~~~~~ll~~g~~~~~~~~~~~~~----~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~ 309 (347)
. ...+. ......+..+++ .++.+++++.+|+. ++++++|...++..+++|+++++++++++||++++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~ 332 (350)
T PTZ00343 254 KKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG 332 (350)
T ss_pred HHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh
Confidence 2 11110 001112233444 45577899999995 9999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhcc
Q 019022 310 VIGGVITCVGFYTVLWG 326 (347)
Q Consensus 310 ~iG~~li~~g~~l~~~~ 326 (347)
++|+++++.|++++.+-
T Consensus 333 ~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 333 YLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=1.6e-26 Score=209.15 Aligned_cols=289 Identities=19% Similarity=0.226 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 019022 18 AAECTIVGENIIFKLATSKGMS-YFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGY 96 (347)
Q Consensus 18 ~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 96 (347)
..+++-..+...+....+.+.+ |...+++-+..-.++..+. ..+ |++.+.+.+..+++|+++++.+++...++.+.+
T Consensus 20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~-~~~-r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v 97 (334)
T PF06027_consen 20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPI-LLY-RRGFKKWLKVLKRPWWKYFLLALLDVEANYLVV 97 (334)
T ss_pred HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhh-hhh-ccccccchhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777555666 8888888887777777776 555 332223233455678889999999999999999
Q ss_pred hhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCC
Q 019022 97 TGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWT 176 (347)
Q Consensus 97 ~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~ 176 (347)
.|++|++.+.++++..+..+++++++++++|||. ++.+++|+++++.|++++...+... .+
T Consensus 98 ~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry------~~~~~~gv~i~i~Gv~lv~~sD~~~-------------~~ 158 (334)
T PF06027_consen 98 LAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRY------SWFHILGVLICIAGVVLVVVSDVLS-------------GS 158 (334)
T ss_pred HHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhh------hHHHHHHHHHHHhhhhheeeecccc-------------cc
Confidence 9999999999999999999999999999999998 6669999999999999887322211 11
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccc-ccccccCchhHHHH
Q 019022 177 PQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNL-SAWRLKPDIELASI 255 (347)
Q Consensus 177 ~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 255 (347)
++.+.++..+||+++++|+++||+++++.++..++.+ ..++..+..+++.++..+...+.|... .... ++......
T Consensus 159 ~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~~~ 235 (334)
T PF06027_consen 159 DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVIGL 235 (334)
T ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhHHH
Confidence 1234567789999999999999999999999999887 889999999999999999988887542 1111 23333334
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCccc
Q 019022 256 VYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 330 (347)
Q Consensus 256 l~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~ 330 (347)
.....++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|+.|.+++...+++.
T Consensus 236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 444444666778888888999999999999999999999999999999999999999999999999988755443
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=1.1e-26 Score=209.72 Aligned_cols=274 Identities=12% Similarity=0.058 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019022 13 FTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIF-RSNTASLPLFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (347)
.+..++++++|+...+..|... +.-++ +.+++.....+.++++ ...+ ++ ..++..+++.+......++.+..+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPY-GLWYLAQ--VGWSRLPATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHH-HHHhccc--CCCCCcchhhHHHHHHHHHHHHHH
Confidence 4567889999999999999774 34344 3577777777777777 5542 12 221333344444455555555999
Q ss_pred HHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcc
Q 019022 92 RILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQ 171 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~ 171 (347)
+.+++.|++++++++++.+.++.|+++.+++++++|||+ +++++.|+.+++.|+.++.. ++.
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~------~~~~~~g~~~~~~Gv~ll~~-~~~----------- 138 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETL------SPLAWLGILIITLGLLVLGL-SRF----------- 138 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHhc-ccc-----------
Confidence 999999999999999999999999999999999999998 66699999999999988762 111
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchH---HHHHHHHHHHHHHHHHHHHhcccccccccccC
Q 019022 172 SLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEF---VVTLLYCLFATIISAPICFVGESNLSAWRLKP 248 (347)
Q Consensus 172 ~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (347)
......|+.++++++++|+.|.+..|+..++.++.. ....+.....++...+.....+... +. .+
T Consensus 139 ---------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~ 206 (281)
T TIGR03340 139 ---------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PY 206 (281)
T ss_pred ---------cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hh
Confidence 011235888999999999999999887654443111 2222222222122222221111111 11 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhh
Q 019022 249 DIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 249 ~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l 322 (347)
+..+...++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+++
T Consensus 207 ~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 207 ARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 23456677888889999999999999999999999999999999999999999999999999999999999875
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=2.8e-25 Score=197.97 Aligned_cols=250 Identities=12% Similarity=0.004 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCC---CCCCCCchhH-HHHHHHHHH
Q 019022 11 ALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNT---ASLPLFKFPV-ISRICFLSL 86 (347)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~g~ 86 (347)
|+++.+++++++||.++++.|.. ++++|.+++++|+.++.++++++ ...+++.+ ++.++.++++ +......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLS-VTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHH-HHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 58899999999999999999985 46999999999999999888776 54322100 0101112222 445677787
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCC
Q 019022 87 VGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTA 166 (347)
Q Consensus 87 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~ 166 (347)
+.+.++.+++.|++++++++++++.++.|+++++++++++|||+ +++++.++++++.|+.++.. .+
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~------~~~~~l~~~~~~~Gv~li~~-~~------- 144 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERI------SRFQFIAVIIATLGVISNIV-LK------- 144 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHH-Hc-------
Confidence 78999999999999999999999999999999999999999999 66699999999999988762 10
Q ss_pred CCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 019022 167 SIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRL 246 (347)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (347)
++. ..++++++++|+.|.+..|+..++ + ........ ........+.....+.... ...
T Consensus 145 --------------~~~----~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 202 (256)
T TIGR00688 145 --------------GSL----PWEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLLQTDFATV-QQT 202 (256)
T ss_pred --------------CCc----hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHHHhccCcc-ccc
Confidence 000 135788999999999999987543 3 22222111 1111111111111111110 111
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHH
Q 019022 247 KPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIF 300 (347)
Q Consensus 247 ~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~ 300 (347)
.+...|..+.+.|+. +.++|.++++++|+.++++++.+.++||+++.++++++
T Consensus 203 ~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 203 NPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred CchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 122478888888875 88999999999999999999999999999999999764
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.93 E-value=7.2e-24 Score=178.07 Aligned_cols=277 Identities=16% Similarity=0.068 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (347)
+++.++.+++..-....+.|..+ ..++|...+.+|..++++.++++ ++ . .+ ++.++++++.....|+.....
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l---~R-P--wr-~r~~~~~~~~~~~yGvsLg~M 84 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLAL---FR-P--WR-RRLSKPQRLALLAYGVSLGGM 84 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHH---hh-H--HH-hccChhhhHHHHHHHHHHHHH
Confidence 68888888888888888999998 68999999999999999988877 42 2 12 456788999999999999999
Q ss_pred HHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcc
Q 019022 92 RILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQ 171 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~ 171 (347)
|.+||.+++.++.+.+..+-.+.|+.+..++- | +.++...+.+++.|..++. ..++
T Consensus 85 Nl~FY~si~riPlGiAVAiEF~GPL~vA~~~s---------R---r~~d~vwvaLAvlGi~lL~-p~~~----------- 140 (292)
T COG5006 85 NLLFYLSIERIPLGIAVAIEFTGPLAVALLSS---------R---RLRDFVWVALAVLGIWLLL-PLGQ----------- 140 (292)
T ss_pred HHHHHHHHHhccchhhhhhhhccHHHHHHHhc---------c---chhhHHHHHHHHHHHHhhe-eccC-----------
Confidence 99999999999999999999999999888752 2 4558889999999998887 2222
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchh
Q 019022 172 SLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIE 251 (347)
Q Consensus 172 ~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (347)
+..+.+..|..+++.++.||++|.+..+|..+..+ ..+-....+..++++.+|+.....++.. + .+.-
T Consensus 141 -------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag~~l-~---~p~l 208 (292)
T COG5006 141 -------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAGPAL-F---SPSL 208 (292)
T ss_pred -------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcchhh-c---ChHH
Confidence 22455578999999999999999999999987666 7888889999999999999875543211 1 3335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcccc
Q 019022 252 LASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 331 (347)
Q Consensus 252 ~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~ 331 (347)
...-+..+++++++.|.+-..+++|.+....+.+..+||.++.+.|++++||++|+.||+|...|+.+..-..+..+|+.
T Consensus 209 l~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 209 LPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 56667889999999999999999999999999999999999999999999999999999999999998776655544444
Q ss_pred c
Q 019022 332 A 332 (347)
Q Consensus 332 ~ 332 (347)
.
T Consensus 289 ~ 289 (292)
T COG5006 289 V 289 (292)
T ss_pred C
Confidence 3
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=4.2e-23 Score=186.94 Aligned_cols=283 Identities=21% Similarity=0.266 Sum_probs=214.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
++........+...+.|+.+....|.......++....+.|...+.+...+. ....+. .+ ++..++ ++...+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~-~~~~~~~~~ 77 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPL-LLLEPR--GL-RPALRP-WLLLLLLAL 77 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHH-HHhhcc--cc-cccccc-hHHHHHHHH
Confidence 3455677888888899999999999996323677777777999988884444 221111 12 211222 344555555
Q ss_pred HH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHH-HhhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc
Q 019022 87 VG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAI-IFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS 164 (347)
Q Consensus 87 ~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~-~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~ 164 (347)
++ ..++.+++.++++++++.++++.++.|+++.+++. +++|||+ +++++.++.+++.|++++.. .+.. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~------~~~~~~~~~~~~~Gv~lv~~-~~~~-~- 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERL------SLLQILGILLALAGVLLILL-GGGG-G- 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCC------cHHHHHHHHHHHHhHHheec-CCCc-c-
Confidence 55 99999999999999999999999999999999997 7779999 66699999999999999882 1110 0
Q ss_pred CCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHH-HHHHHHHHHHHHHHHhccccccc
Q 019022 165 TASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTL-LYCLFATIISAPICFVGESNLSA 243 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
... ...|+.+++.++++|+++.+..|+.. +.+ +..... +..........+. ...+.+
T Consensus 149 ---------------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 206 (292)
T COG0697 149 ---------------GIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLF-FLSGFG--- 206 (292)
T ss_pred ---------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHH-Hhcccc---
Confidence 011 56899999999999999999999987 544 555444 3333222222221 111111
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhh
Q 019022 244 WRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 323 (347)
Q Consensus 244 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~ 323 (347)
.......+....+.|++++++++.+|++++++.++..++.+.+++|+++.+++++++||+++..+++|+++++.|+.+.
T Consensus 207 -~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~ 285 (292)
T COG0697 207 -APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA 285 (292)
T ss_pred -ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 1113457888999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcc
Q 019022 324 LWG 326 (347)
Q Consensus 324 ~~~ 326 (347)
..+
T Consensus 286 ~~~ 288 (292)
T COG0697 286 SLR 288 (292)
T ss_pred hcc
Confidence 766
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=173.16 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=224.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCC--CCCchhHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASL--PLFKFPVISRICFL 84 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 84 (347)
.+..+|++..+.+.++||..+...|.. ++.++.++...|...+.++++.. ....|+. +.. -..+++.+..+.+.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~l-l~~~r~~-~~~~~~~~~p~~~~~~~l~ 78 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLAL-LFLLRQW-RELKQLLKQPKTLLMLALT 78 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHH-HHHHhhh-HHHHHHHhCcHHHHHHHHH
Confidence 345789999999999999999999999 68999999999999999988877 4433321 111 12355667778888
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc
Q 019022 85 SLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS 164 (347)
Q Consensus 85 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~ 164 (347)
+.+...++..+.+|.+....-++++-++.+|++.++++.+++|||+ ++.|+++++++.+||.......|+.
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErl------s~~Q~iAV~lA~~GV~~~~~~~g~l--- 149 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERL------SRLQWIAVGLAAAGVLIQTWLLGSL--- 149 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhc------cHHHHHHHHHHHHHHHHHHHHcCCC---
Confidence 8888999999999999999999999999999999999999999999 7789999999999999887433321
Q ss_pred CCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 019022 165 TASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAW 244 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (347)
. ..++.-+++|+.|...-|+. +. |+.+-....+..-....+.+.+..+...+..
T Consensus 150 -------------------p----wval~la~sf~~Ygl~RK~~--~v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~ 203 (293)
T COG2962 150 -------------------P----WVALALALSFGLYGLLRKKL--KV-DALTGLTLETLLLLPVALIYLLFLADSGQFL 203 (293)
T ss_pred -------------------c----HHHHHHHHHHHHHHHHHHhc--CC-chHHhHHHHHHHHhHHHHHHHHHHhcCchhh
Confidence 1 24445566788887765543 33 3667677777666666666665554433211
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 245 RLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 245 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
...+...+..+...|. .++++..++..+-++++-+..+.+++.+|..-.+++.+++||+++..+++..+.|..|+.++.
T Consensus 204 ~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 204 QQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFS 282 (293)
T ss_pred hcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1124456767777777 788999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccC
Q 019022 325 WGK 327 (347)
Q Consensus 325 ~~~ 327 (347)
...
T Consensus 283 ~d~ 285 (293)
T COG2962 283 IDG 285 (293)
T ss_pred HHH
Confidence 643
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.89 E-value=8e-21 Score=171.77 Aligned_cols=274 Identities=13% Similarity=0.080 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (347)
+.+..++++++||.+++..|.. . +.++.++. |..++.+++..+ ....|+ ++ + ..++.+..-++.|.+...+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~-~~~~~~--~~-~-~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIA-IAIFVL--PE-F-WALSIFLVGLLSGAFWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHH-HHHHhC--Cc-c-cccHHHHHHHHHHHHHHhh
Confidence 4678899999999999999998 3 78887765 777777776665 443233 22 1 1244555566677777889
Q ss_pred HHHHHhhhhccChhhHHHHhh-hhHHHHHHHHHHhhhccccccccCccee----eehhhhhhhhhhhhhhccCcccccCC
Q 019022 92 RILGYTGIAYSSPTLASMIGN-LTPGFTFILAIIFRMENLALSSLSTWAK----IIGTLVSVSGAMLVVLYKGPTIMSTA 166 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~a~~~~~e~~~~~~~~~~~~----~~gi~l~~~Gv~li~~~~g~~~~~~~ 166 (347)
+.+++.++++++.+.+..+.+ ++++++.+.+.+++|||. ++++ +.|+++++.|++++.. .++....
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~------t~~~~~~~~~g~~l~l~G~~l~~~-~~~~~~~-- 143 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWS------TSIQTLLGLLALILIIIGVYLTSR-SKDKSAG-- 143 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHhHheEEe-ccccccc--
Confidence 999999999999999999988 899999999999999988 5557 9999999999888762 2110000
Q ss_pred CCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHH---HHHHHHHHHHHHHhccccccc
Q 019022 167 SIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLY---CLFATIISAPICFVGESNLSA 243 (347)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 243 (347)
..+..+..+|..+++.++++|+.|.+..|.. +++ +.+..+.+ .+.++....+.. . .. .+
T Consensus 144 -----------~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~-~-~~--~~ 205 (290)
T TIGR00776 144 -----------IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH-I-LA--KP 205 (290)
T ss_pred -----------cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH-h-cc--cc
Confidence 0001334679999999999999999999976 354 66663333 333333333322 1 11 11
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHhc-cCCceeehhhhhHHHHHHHHHHHHHhcCccchhhh----hhHHHHHH
Q 019022 244 WRLKPDIELASIVYSAFFGLSFITVVHTFGLR-MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSV----IGGVITCV 318 (347)
Q Consensus 244 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~-~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~----iG~~li~~ 318 (347)
+ .++..+..++ .|++ ..+++.+|..+.+ +.+++.++.+...||+.+.+++++++||..++.++ +|+++++.
T Consensus 206 ~--~~~~~~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~ 281 (290)
T TIGR00776 206 L--KKYAILLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIII 281 (290)
T ss_pred h--HHHHHHHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHH
Confidence 1 1223444444 8886 6899999999999 99999999999999999999999999999999999 99999999
Q ss_pred hhhhhhc
Q 019022 319 GFYTVLW 325 (347)
Q Consensus 319 g~~l~~~ 325 (347)
|+.+...
T Consensus 282 ~~~l~~~ 288 (290)
T TIGR00776 282 AANILGI 288 (290)
T ss_pred HHHHHhc
Confidence 9877543
No 17
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.88 E-value=4.4e-24 Score=180.44 Aligned_cols=290 Identities=16% Similarity=0.110 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHH
Q 019022 10 GALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGS 89 (347)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (347)
.++.....+. ..+.+..++++..+ ..+|.+..-.|.++-.+...|. ..+++. .. ..++.+...++++|+.|.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pc-liy~~~--~v--~gp~g~R~~LiLRg~mG~ 108 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPC-LIYYMQ--PV--IGPEGKRKWLILRGFMGF 108 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheE-EEEEee--ee--ecCCCcEEEEEeehhhhh
Confidence 3455555555 44555555555553 6899999999988888888777 555333 11 123344456899999998
Q ss_pred HHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCC
Q 019022 90 FFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIP 169 (347)
Q Consensus 90 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~ 169 (347)
.+....|+++.|.+.++++++..++|+++.++++.++|||. ++...++.++.+.||+++. ..++....+
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~------t~~eaL~s~itl~GVVLIv--RPpFlFG~~--- 177 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPF------TKFEALGSLITLLGVVLIV--RPPFLFGDT--- 177 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCC------cHHHHHHHHHhhheEEEEe--cCCcccCCC---
Confidence 88999999999999999999999999999999999999999 7889999999999999987 333322110
Q ss_pred cccCCCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccccccccc-
Q 019022 170 AQSLHWTPQST-RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLK- 247 (347)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 247 (347)
.++++++ ......|...++.+.++-|..+++.|+..|+.+ ......+....+.+...+....-+. +..+
T Consensus 178 ----t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~----~~lP~ 248 (346)
T KOG4510|consen 178 ----TEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGA----VQLPH 248 (346)
T ss_pred ----ccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccc----eecCc
Confidence 0011111 233456788889999999999999999988887 4444444455555555554433321 2211
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 248 PDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 248 ~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
...+|..+..+|+ .+.+++++...++++-.+..+++..+...++|.+++.+++||.|+.+.|.|+++++.+.+.....|
T Consensus 249 cgkdr~l~~~lGv-fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 249 CGKDRWLFVNLGV-FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred cccceEEEEEehh-hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 3347777888888 556899999999999999999999999999999999999999999999999999999977765544
Q ss_pred c
Q 019022 328 A 328 (347)
Q Consensus 328 ~ 328 (347)
.
T Consensus 328 w 328 (346)
T KOG4510|consen 328 W 328 (346)
T ss_pred H
Confidence 3
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=1.3e-18 Score=158.80 Aligned_cols=281 Identities=17% Similarity=0.176 Sum_probs=216.2
Q ss_pred HHHHHHHHHh-CCCC--hhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019022 26 ENIIFKLATS-KGMS--YFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGYTGIAYS 102 (347)
Q Consensus 26 ~~~~~k~~~~-~~~~--p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 102 (347)
+.+.-+.... ++.. |..+++..+....+...+. ....++ ++.++..++.+...+++......+-+.+++|+
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFIL-LSLFKF-----PKSRKIPLKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHH-HHhccc-----cCCCcChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444432 2344 8888999888888777766 433221 22345557788899999999999999999999
Q ss_pred ChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCc
Q 019022 103 SPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRS 182 (347)
Q Consensus 103 ~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (347)
+.+..+++..+.|+++++++.+++|+|. +++++.++++..+|+.+..+.+....+. ++....
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y------~~~~~~~v~li~~Gv~~~~~~~~~~~~~------------~~~~~~ 150 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRY------SRRQYLSVLLITIGVAIFTLSDSSSSSS------------SNSSSF 150 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccc------cHHHHHHHHHHHhhHheeeecccccccc------------cccccc
Confidence 9999999999999999999999999988 6679999999999999987432221111 112223
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHh--ccccccccc--ccCchhHHHHHH
Q 019022 183 RWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFV--GESNLSAWR--LKPDIELASIVY 257 (347)
Q Consensus 183 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~ll~ 257 (347)
++..|+.+.+.+.++.|...+.+++..++++ ++.+.+++...++.+...+.... .++..+..+ ...+ .....+.
T Consensus 151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p-~~~~~l~ 229 (303)
T PF08449_consen 151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHP-SVLLYLL 229 (303)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhH-HHHHHHH
Confidence 3344999999999999999999999998776 57899999999999988888777 332111111 1112 2333334
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcccc
Q 019022 258 SAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 331 (347)
Q Consensus 258 ~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~ 331 (347)
.-.+++.++..+.+...++.++...+++..+.-+++++++.+++|+++++.+|+|.++++.|..++...|+|++
T Consensus 230 ~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 230 LFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 44447778888888999999999999999999999999999999999999999999999999999988776653
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=1.9e-19 Score=159.68 Aligned_cols=232 Identities=19% Similarity=0.294 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcc
Q 019022 82 CFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPT 161 (347)
Q Consensus 82 ~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~ 161 (347)
+....+...+++.+..|+.|++++..+++..++-+|+.+++.++..||+ ++.|++++.+++.|++++...+..
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~f------t~sKllav~~si~GViiVt~~~s~- 235 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERF------TLSKLLAVFVSIAGVIIVTMGDSK- 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchh------hHHHHHHHHHhhccEEEEEecccc-
Confidence 3333444999999999999999999999999999999999999999999 667999999999999998843222
Q ss_pred cccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---chHHHHHHHHHHHHHHHHHHHHhcc
Q 019022 162 IMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP---AEFVVTLLYCLFATIISAPICFVGE 238 (347)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
+.+.........|+++++++++.||.|.++.|+...+.+ |...+..+..++..+.++|..++-+
T Consensus 236 -------------~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~ 302 (416)
T KOG2765|consen 236 -------------QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD 302 (416)
T ss_pred -------------ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 112234556688999999999999999999999886652 5667888888888888887766543
Q ss_pred c-ccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH
Q 019022 239 S-NLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITC 317 (347)
Q Consensus 239 ~-~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~ 317 (347)
. ..+.+..+.......+++.++++++++-++|.++.-..+|..++.-+.++.+.+++.+.++-|..+++.+++|.+.|+
T Consensus 303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~If 382 (416)
T KOG2765|consen 303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIF 382 (416)
T ss_pred HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 2 223334445557777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhccCcccccC
Q 019022 318 VGFYTVLWGKANDEAG 333 (347)
Q Consensus 318 ~g~~l~~~~~~~~~~~ 333 (347)
+|.+.++...+...+.
T Consensus 383 v~Fv~vn~~~~~~~~~ 398 (416)
T KOG2765|consen 383 VGFVIVNISSENSKKD 398 (416)
T ss_pred HHHhheeccccccccc
Confidence 9999988766544443
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.79 E-value=3e-18 Score=153.46 Aligned_cols=289 Identities=14% Similarity=0.133 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATS--KGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGS 89 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~--~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (347)
..++.....++-......+|..++ +.--|..++..+...+.+..+.. ....-. +..+..++.++...+..|++.+
T Consensus 18 ~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~-~~l~~~--~~~~~~~~~~~~~llpl~~~~~ 94 (316)
T KOG1441|consen 18 IGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVI-KVLKLV--PPSKISSKLPLRTLLPLGLVFC 94 (316)
T ss_pred HHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHH-HHhcCC--CCCccccccchHHHHHHHHHHH
Confidence 333344444444555666799986 44668888888887777777766 444311 2212235577899999999999
Q ss_pred HHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCC
Q 019022 90 FFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIP 169 (347)
Q Consensus 90 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~ 169 (347)
.+..+-+.+++|.+++..+.+..++|++++++++++.+|+. +...+..++....|+.+... ++
T Consensus 95 ~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~------s~~~~lsL~piv~GV~ias~--~e--------- 157 (316)
T KOG1441|consen 95 ISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTY------SSMTYLSLLPIVFGVAIASV--TE--------- 157 (316)
T ss_pred HHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCC------cceEEEEEEEeeeeEEEeee--cc---------
Confidence 99999999999999999999999999999999999999988 55688999999999988762 22
Q ss_pred cccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh--hCC-chHHHHHHHHHHHHHHHH-HHHHhcccccc---
Q 019022 170 AQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMK--LYP-AEFVVTLLYCLFATIISA-PICFVGESNLS--- 242 (347)
Q Consensus 170 ~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--- 242 (347)
.+-...|...++++.+..++.+++.++..+ +.+ ++.+...++...+...++ |+....+++..
T Consensus 158 -----------~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~ 226 (316)
T KOG1441|consen 158 -----------LSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGF 226 (316)
T ss_pred -----------ccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeee
Confidence 334467999999999999999999999995 333 799999999999999999 77766665432
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhh
Q 019022 243 AWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 243 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l 322 (347)
.. ..++......++.. ++...-+..-+..+.+++|...++.+...-++.++.++++++|+.++.+..|..+.+.|+++
T Consensus 227 ~~-~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~ 304 (316)
T KOG1441|consen 227 LT-APWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFL 304 (316)
T ss_pred ec-cccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHH
Confidence 11 01222333444444 35555566677789999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccC
Q 019022 323 VLWGKANDEAG 333 (347)
Q Consensus 323 ~~~~~~~~~~~ 333 (347)
+.+.|.+++++
T Consensus 305 Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 305 YSRAKLKEKKG 315 (316)
T ss_pred HHHHhhhhhcc
Confidence 99888766654
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.4e-14 Score=120.87 Aligned_cols=231 Identities=15% Similarity=0.124 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 75 FPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
+...+.+...+.-..+.....+.|++|++=....+-.++-|+-+++++.++.+.+. +|++...++..++|+.+.
T Consensus 82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY------~w~kY~cVL~IV~GValF 155 (337)
T KOG1580|consen 82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSY------HWRKYCCVLMIVVGVALF 155 (337)
T ss_pred CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccc------cHHHHHHHHHHHHHHHHh
Confidence 33345566666666777788889999999888888999999999999999987766 667999999999999998
Q ss_pred hhcc-CcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHH
Q 019022 155 VLYK-GPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAP 232 (347)
Q Consensus 155 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (347)
. +. +..+. ..+.+...|.++.++|-...++....+.+..+.+. ....++++..+.+.+.+..
T Consensus 156 m-YK~~Kv~g---------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~ 219 (337)
T KOG1580|consen 156 M-YKENKVGG---------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGA 219 (337)
T ss_pred h-ccccccCC---------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhh
Confidence 8 44 33222 34667789999999999999999999999887764 4668888888888888777
Q ss_pred HHHhccccccc--ccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhh
Q 019022 233 ICFVGESNLSA--WRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSV 310 (347)
Q Consensus 233 ~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~ 310 (347)
-..++++..+. +....+..|.-+..+++ ++++++.+.+..+...+|..-+++....-+++++.+.++++.+++.+||
T Consensus 220 g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQw 298 (337)
T KOG1580|consen 220 GLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQW 298 (337)
T ss_pred hheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHH
Confidence 65555442221 11223345556667776 8999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhh-hccCc
Q 019022 311 IGGVITCVGFYTV-LWGKA 328 (347)
Q Consensus 311 iG~~li~~g~~l~-~~~~~ 328 (347)
+|.++++.+...= ..+|+
T Consensus 299 lgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 299 LGTVLVFSALTADVVDGKK 317 (337)
T ss_pred HHHHHHHHHhhhHhhcCCc
Confidence 9999999997774 33443
No 22
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.63 E-value=8.8e-16 Score=129.57 Aligned_cols=269 Identities=16% Similarity=0.113 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019022 23 IVGENIIFKLATSKGM-SYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGYTGIAY 101 (347)
Q Consensus 23 ~~~~~~~~k~~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~ 101 (347)
-+........+ .+++ .|...+|..+..-+++..++ +.+ |+ +. -+..|+.++++++..+-++++...|.+|
T Consensus 31 t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~-~~f-R~--~~----~~~~~~hYilla~~DVEaNy~vV~AyQy 101 (336)
T KOG2766|consen 31 TSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPI-MLF-RR--KY----IKAKWRHYILLAFVDVEANYFVVKAYQY 101 (336)
T ss_pred HcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhH-HHh-hh--HH----HHHHHHHhhheeEEeecccEEEeeehhh
Confidence 33333333444 3433 47778999999999999999 777 43 22 2445778999999998899999999999
Q ss_pred cChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCC
Q 019022 102 SSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTR 181 (347)
Q Consensus 102 ~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~ 181 (347)
++...++++---...-+.+++|+++|.|- ++.++.|+++++.|++++++ ++- |+++.+++
T Consensus 102 TsmtSi~lLDcwaip~v~~lsw~fLktrY------rlmki~gV~iCi~GvvmvV~-sDV-------------~agd~agg 161 (336)
T KOG2766|consen 102 TSMTSIMLLDCWAIPCVLVLSWFFLKTRY------RLMKISGVVICIVGVVMVVF-SDV-------------HAGDRAGG 161 (336)
T ss_pred cchHHHHHHHHhhhHHHHHHHHHHHHHHH------hhheeeeEEeEecceEEEEE-eee-------------ccccccCC
Confidence 99999999988888899999999999977 56699999999999999883 221 22445667
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccc-ccccccccCchhHHHHHHHHH
Q 019022 182 SRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGES-NLSAWRLKPDIELASIVYSAF 260 (347)
Q Consensus 182 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~g~ 260 (347)
.+-.+|+.+.++++-+||..++....+.|+.+ ..+.+....++|+++..+. .+++. +..... ++......+. ..
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~--w~~~i~~yl~-f~ 236 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVSTLH--WDSAIFLYLR-FA 236 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-HhhhccceeeEe--ehHHHHHHHH-HH
Confidence 77889999999999999999999999988887 9999999999999999998 44443 221111 2222222222 33
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 261 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
++..+-|.+.-..+|..+++..+.-..+.-.++.+. -.+|-+.++...+..+.+..|.+++..++
T Consensus 237 L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 237 LTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 455556666667788999999999888999999888 56788899999999999999998885443
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.57 E-value=2.1e-14 Score=108.68 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHH
Q 019022 11 ALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSF 90 (347)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (347)
...++.++++++|+...++.|..+ +++||...++.|..+...++..+ ++..++ ++..-..++|.|..+.+.|+.++.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v-~~~~g~-~~~~~~~~~k~~lflilSGla~gl 79 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIV-LLVTGN-WQAGGEIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHH-HHhcCc-eecccccCcceehhhhHHHHHHHH
Confidence 346778999999999999999997 79999999999999999988888 666422 133223578889999999998999
Q ss_pred HHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 91 FRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 91 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
++.+||.|++...++.+..+-.++|+++++++++++|||+ +..+++|+++..+|++++.
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~l------s~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERL------SLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCC------CHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999 5569999999999998765
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.56 E-value=1.1e-13 Score=104.82 Aligned_cols=135 Identities=17% Similarity=0.113 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHH
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 266 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 266 (347)
-..+++++++++++..++.|.-.++.+ |...++.........+..+....++. +......+..|..+...|+ .++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHHH-HHHHH
Confidence 357899999999999999999988887 88888999888888888877766542 1111125567888777775 88899
Q ss_pred HHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 267 TVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 267 ~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
..+|+++++..+++++.++.-++|+++++++++++||+++..+++|+.+|.+|..++.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999987754
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.55 E-value=9.5e-13 Score=115.55 Aligned_cols=230 Identities=13% Similarity=0.186 Sum_probs=169.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhh
Q 019022 74 KFPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAML 153 (347)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 153 (347)
++++..++.+-+++....+.+.+.++++.+|+..+++.++..+++++++++++|+|+ +++||.++.+.++|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~l------s~~qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRL------SRRQWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHccc------chhhHHHHHHHHHHHhe
Confidence 456677888888889999999999999999999999999999999999999999999 66699999999999988
Q ss_pred hhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHH
Q 019022 154 VVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAP 232 (347)
Q Consensus 154 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (347)
+-. ++......+ +.+.....+...+...|..+.+.++++.|+..++.++..|+.+ +....+.....++.++.++
T Consensus 87 v~~-~~~~~~~~~----~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~ 161 (244)
T PF04142_consen 87 VQL-SSSQSSDNS----SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL 161 (244)
T ss_pred eec-CCccccccc----cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 762 222111100 0000001123556689999999999999999999999999875 3445666666777777766
Q ss_pred HHHhccccc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhh
Q 019022 233 ICFVGESNL-SAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVI 311 (347)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~i 311 (347)
.....+... .+.. .-..+-...+.-++..+++=.+....+|+.+...=+.-...+.+++.+.+++++|.+++....+
T Consensus 162 ~~~~~~~~~~~~~g--~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l 239 (244)
T PF04142_consen 162 ALLLSDGSAISESG--FFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL 239 (244)
T ss_pred HHhcccccccccCC--chhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence 654443311 1000 0012222233334445555555666788988888889999999999999999999999999999
Q ss_pred hHHHH
Q 019022 312 GGVIT 316 (347)
Q Consensus 312 G~~li 316 (347)
|..++
T Consensus 240 g~~~V 244 (244)
T PF04142_consen 240 GAALV 244 (244)
T ss_pred heecC
Confidence 98753
No 26
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.5e-11 Score=109.87 Aligned_cols=301 Identities=12% Similarity=0.128 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHHHhhhhhhh-cc-CCCCCC------CCchhHHH
Q 019022 11 ALFTAMVAAECTIVGENIIFKLATSKG---MSYFVFVFYSYAATTLVLLLLFPFIF-RS-NTASLP------LFKFPVIS 79 (347)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~k~~~~~~---~~p~~~~~~r~~~~~l~l~~~~~~~~-~~-~~~~~~------~~~~~~~~ 79 (347)
.-.+.++...+-++...+..|+.-..+ +.|....+.--.+-.++.... .+.. |+ ..+..+ ...+++..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~-~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFL-LLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHH-HHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 446667778888999999999996445 556666666665555554444 3332 11 001101 12233455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccC
Q 019022 80 RICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKG 159 (347)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g 159 (347)
+..+-+++.+..|.+.|.++.+.+++..++.+++-.+.|++++.+++++|+ +++||.++++.++|+.++-....
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkL------s~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKL------SRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHhccCC
Confidence 666667778888889999999999999999999999999999999999999 66699999999999988752111
Q ss_pred cccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhcc
Q 019022 160 PTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGE 238 (347)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (347)
+.. .+.+.....+...|....+.++...+...++.++.+|+.+ +....+....+++.++.+.-.+..+
T Consensus 168 ~~~-----------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d 236 (345)
T KOG2234|consen 168 SPT-----------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD 236 (345)
T ss_pred CCC-----------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 110 1111344667789999999999999999999999998765 3445555666667776666665554
Q ss_pred cccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHH
Q 019022 239 SNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCV 318 (347)
Q Consensus 239 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~ 318 (347)
.....|.... ..|-...+.-++..+++=.+....+|+.+-..=+....+..+++.+.++.+++-+||....+|..+++.
T Consensus 237 ~~~i~~~gff-~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~ 315 (345)
T KOG2234|consen 237 GEAINEYGFF-YGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVIL 315 (345)
T ss_pred ccccccCCcc-ccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Confidence 4322121100 122333333334444444455555677776666777778899999999999999999999999999999
Q ss_pred hhhhhhccCccc
Q 019022 319 GFYTVLWGKAND 330 (347)
Q Consensus 319 g~~l~~~~~~~~ 330 (347)
++.++...++++
T Consensus 316 Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 316 SIFLYSLYPARD 327 (345)
T ss_pred HHHHhhcCCccc
Confidence 999999665544
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.54 E-value=8e-13 Score=114.87 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=205.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHH
Q 019022 39 SYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFT 118 (347)
Q Consensus 39 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~ 118 (347)
+|....+...+.+.++-... ... ++ +. ...++.|+.+...++.+.....|-|.|++|++--...+-..+--+-+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~-l~~-~k--~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAM-LKW-WK--KE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHH-Hhc-cc--cc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence 46677777777777776544 322 33 22 22445688899999999999999999999999888888899999999
Q ss_pred HHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHH
Q 019022 119 FILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLI 198 (347)
Q Consensus 119 ~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~ 198 (347)
+++..++.|.|. +..+.....+.-.|+.+..+++.+.+.. .....+...|..+....-++.
T Consensus 124 mlmg~Lvy~~ky------~~~eYl~~~LIs~GvsiF~l~~~s~s~~-------------~~g~~ns~~G~~Ll~~~L~fD 184 (327)
T KOG1581|consen 124 MLMGTLVYGRKY------SSFEYLVAFLISLGVSIFSLFPNSDSSS-------------KSGRENSPIGILLLFGYLLFD 184 (327)
T ss_pred HHHHHHHhcCcc------CcHHHHHHHHHHhheeeEEEecCCCCcc-------------ccCCCCchHhHHHHHHHHHHH
Confidence 999999999988 4458888888889998887543322111 233466788999999999999
Q ss_pred HHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhccccccc--ccccCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019022 199 SVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSA--WRLKPDIELASIVYSAFFGLSFITVVHTFGLR 275 (347)
Q Consensus 199 a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~ 275 (347)
+..+..+.++.+++. .+..++++..++.++.........+..... +-...+.-+.-++.... |+++++.+.++-++
T Consensus 185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~ 263 (327)
T KOG1581|consen 185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIE 263 (327)
T ss_pred hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHh
Confidence 999999999998765 688999999999998888875444332111 11112223334444444 77889999999999
Q ss_pred cCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 276 MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 276 ~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
+.++...+.++.+.-.+++.++.+++|.+++..||+|..+++.|+.+-..-+++
T Consensus 264 ~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 264 RFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999987655444
No 28
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.51 E-value=3.2e-12 Score=111.06 Aligned_cols=254 Identities=17% Similarity=0.186 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhcc-C-CCCCCCCchh-HHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHH
Q 019022 40 YFVFVFYSYAATTLVLLLLFPFIFRS-N-TASLPLFKFP-VISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPG 116 (347)
Q Consensus 40 p~~~~~~r~~~~~l~l~~~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi 116 (347)
|...+.++.++-.++.... -..+++ . +.+ ...+++ +.++....|++.++...+-+++++|++.+..++..++.++
T Consensus 45 PLf~ts~h~~v~flfa~~~-~~l~~~~~~r~r-~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~ 122 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALS-RRLYQCSVPRAR-VVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSIL 122 (349)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHhccCCccc-cCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHH
Confidence 6777777777666665544 333222 0 011 122333 3556778999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHH
Q 019022 117 FTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNL 196 (347)
Q Consensus 117 ~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~ 196 (347)
|+.+++.++.-||+++ .-..-+++..+|++++. ++. .+-...|..+...+.+
T Consensus 123 FIllFs~if~lEk~~w------~L~l~v~lI~~Glflft-~Ks---------------------Tqf~i~Gf~lv~~aS~ 174 (349)
T KOG1443|consen 123 FILLFSLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKS---------------------TQFNIEGFFLVLAASL 174 (349)
T ss_pred HHHHHHHHHHhHHHHH------HHHHHHHHHhhheeEEE-ecc---------------------cceeehhHHHHHHHHH
Confidence 9999999999999943 35566666667777766 222 2344569999999999
Q ss_pred HHHHHHHHHHHHhhhCC----chHHHHHHHHHHHHHHHHHHHHhccccccc-----ccccCch-hHHHHHHHHHHHHHHH
Q 019022 197 LISVWYIIQTQTMKLYP----AEFVVTLLYCLFATIISAPICFVGESNLSA-----WRLKPDI-ELASIVYSAFFGLSFI 266 (347)
Q Consensus 197 ~~a~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~ll~~g~~~~~~~ 266 (347)
+-++.+.+.+..+++.+ .|...++.......+.++|..+.+|+.... +...... .+..+...+. ++..+
T Consensus 175 ~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~g~la 253 (349)
T KOG1443|consen 175 LSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-GGLLA 253 (349)
T ss_pred hhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-HHHHH
Confidence 99999999999988755 688888888888888999999999874222 1111221 2222222222 34444
Q ss_pred HHHH---HHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 267 TVVH---TFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 267 ~~~~---~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
+.+- +..+.+++....++.....-+.+.+++..+.+|.++...|+|..+.+.|+..+.
T Consensus 254 F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~ 314 (349)
T KOG1443|consen 254 FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHR 314 (349)
T ss_pred HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhc
Confidence 4432 345678999999999999999999999999999999999999999999998883
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.50 E-value=8.9e-13 Score=113.02 Aligned_cols=284 Identities=16% Similarity=0.162 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHH---hCC----CChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCC--------C-CCchhHHHHHHHH
Q 019022 22 TIVGENIIFKLAT---SKG----MSYFVFVFYSYAATTLVLLLLFPFIF-RSNTASL--------P-LFKFPVISRICFL 84 (347)
Q Consensus 22 ~~~~~~~~~k~~~---~~~----~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~--------~-~~~~~~~~~~~~~ 84 (347)
.=..+-+.+|++- .++ -+|+..+..-++.-++++..+ .+++ |.|.+-. . ..++-+...++.-
T Consensus 14 sGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf-~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P 92 (372)
T KOG3912|consen 14 SGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVF-KLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP 92 (372)
T ss_pred hccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence 3445677778772 122 347888888888888888888 6665 4422110 0 0111122345556
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc
Q 019022 85 SLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS 164 (347)
Q Consensus 85 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~ 164 (347)
++|...+..+.|.|+.+++++.-+++.....+|+.+++.-++|+++ +.+||.|+.....|++++.. .+-..
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti------~~~qWl~i~fv~lGlviVg~-~d~~~-- 163 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTI------TGRQWLGILFVSLGLVIVGS-LDVHL-- 163 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhccc------chhhHHHHHHHHhhhheeee-eeccc--
Confidence 6777888889999999999999999999999999999999999999 66699999999999988772 21100
Q ss_pred CCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhcccccc-
Q 019022 165 TASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLS- 242 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (347)
...+..+.++...|+++.+++.+.-|+.+++.+|..++.. +|.+...|...++.+++..+......-+.
T Consensus 164 ---------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~ 234 (372)
T KOG3912|consen 164 ---------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG 234 (372)
T ss_pred ---------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence 0111234566789999999999999999999999998876 79999999999997776666554432100
Q ss_pred -cccccCc---hhHHH---------HHHHHHHHHHHHHHHHHHH----hccCCceeehhhhhHHHHHHHHHHHHHhcCcc
Q 019022 243 -AWRLKPD---IELAS---------IVYSAFFGLSFITVVHTFG----LRMKGPVYTAIFKPLSIAIAAITSFIFLSEAL 305 (347)
Q Consensus 243 -~~~~~~~---~~~~~---------ll~~g~~~~~~~~~~~~~~----l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~ 305 (347)
.+.-.+. .+|.- .+++...+...+..+++.+ -|..+++.-..+..+...+..+++.....|.+
T Consensus 235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f 314 (372)
T KOG3912|consen 235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF 314 (372)
T ss_pred CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence 0100000 01111 1223333333444444432 46778888899999999999999999999999
Q ss_pred chhhhhhHHHHHHhhhhhh
Q 019022 306 HLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 306 ~~~~~iG~~li~~g~~l~~ 324 (347)
+..|++|.++.+.|+++++
T Consensus 315 ~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 315 HLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.46 E-value=3.3e-13 Score=106.30 Aligned_cols=125 Identities=15% Similarity=0.266 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019022 196 LLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLR 275 (347)
Q Consensus 196 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~ 275 (347)
++||.+.+..|+..++.+ +....++++..+.+ +.+.....+... ....+...+....+.+++++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 368999999999999987 99999999999998 666666655432 12224557888889999888999999999999
Q ss_pred cCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 276 MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 276 ~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
+.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987754
No 31
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.9e-11 Score=103.49 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=207.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH--HHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 019022 11 ALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVF--YSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG 88 (347)
Q Consensus 11 ~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (347)
++....+.-.+.-..+.++.|..++..=-|..+.. .+++...+.+... -.. |- -+.++.+++..++.+...++.
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~l-k~~-~l--v~~~~l~~~~~kk~~P~~~lf 87 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVL-KRL-GL--VNFRPLDLRTAKKWFPVSLLF 87 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHh-ce--eecCCcChHHHHHHccHHHHH
Confidence 34555555555556677888999865544555555 7777776666655 322 22 333667888889999999999
Q ss_pred HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCC
Q 019022 89 SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASI 168 (347)
Q Consensus 89 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~ 168 (347)
.+..+.-..+++|.++...+++.+..|+++++...+++|.++ +...+.++.....|...... .+
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~------~~~v~~Sv~~m~~~s~~~~~--~d-------- 151 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRP------SNKVWASVFAMIIGSVAAAF--TD-------- 151 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCc------hhhHHHHHHHHHHHHHhhcc--cc--------
Confidence 888888999999999999999999999999999999998655 55677777777777766551 11
Q ss_pred CcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhccccc---ccc
Q 019022 169 PAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNL---SAW 244 (347)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 244 (347)
......|..+++...++-+.+.+..|+..+..+ ....++++..+.+.........++++.. .+.
T Consensus 152 ------------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~ 219 (314)
T KOG1444|consen 152 ------------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNF 219 (314)
T ss_pred ------------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhc
Confidence 222334899999999999999999998876554 4667889999999888888887776511 111
Q ss_pred c-ccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhh
Q 019022 245 R-LKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 323 (347)
Q Consensus 245 ~-~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~ 323 (347)
+ ......+..+...++ ++.+-.++-.+..+..+++..+++....-..+.+-..++.+++.++...+|..+-+.|-.++
T Consensus 220 ~~~~~~~~~~~~~lScv-~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 220 DNWSDSSVLVVMLLSCV-MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred ccccchhHHHHHHHHHH-HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 1 112224555555555 44444555566788889999999995555555555566667788999999999999998888
Q ss_pred hccCccccc
Q 019022 324 LWGKANDEA 332 (347)
Q Consensus 324 ~~~~~~~~~ 332 (347)
.+.+.++++
T Consensus 299 ~~~~~~~k~ 307 (314)
T KOG1444|consen 299 SYATFRKKK 307 (314)
T ss_pred hhhhhhhcc
Confidence 876644443
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.43 E-value=4.7e-13 Score=105.40 Aligned_cols=123 Identities=24% Similarity=0.412 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCCCchhHHHHHHHHHHHH-HHHHHHHHhh
Q 019022 21 CTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIF-RSNTASLPLFKFPVISRICFLSLVG-SFFRILGYTG 98 (347)
Q Consensus 21 ~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a 98 (347)
++||...+..|... ++.||...+++|+..+.+ ++++ .... ++ +. +..+++++......+.++ ..++.+++.+
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLIL-LLILGRK--PF-KNLSPRQWLWLLFLGLLGTALAYLLYFYA 74 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHH-HHhhccc--cc-cCCChhhhhhhhHhhccceehHHHHHHHH
Confidence 46899999999996 579999999999999997 5555 4443 33 32 456777888888888886 9999999999
Q ss_pred hhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 99 IAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 99 l~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+++++++.++.+.+++|+++.+++++++||++ +++++.|+++++.|+.++.
T Consensus 75 ~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~------~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 75 LKYISASIVSILQYLSPVFAAILGWLFLGERP------SWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 6669999999999998764
No 33
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.23 E-value=4.6e-09 Score=92.15 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=172.0
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCc--hhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHh-hhh
Q 019022 38 MSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFK--FPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIG-NLT 114 (347)
Q Consensus 38 ~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~-~~~ 114 (347)
=+|.+...--...+.++-+.. .++ ++ +..+ .+.+...++.|++...++...+.++++.++|.+..+. .++
T Consensus 10 G~~~~Q~lG~t~Gali~alv~-~~~-~~-----p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~Q 82 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVV-FLF-RQ-----PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQ 82 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-HHH-hC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHH
Confidence 345555544444444444444 333 33 3344 4778889999999999999999999999999998885 588
Q ss_pred HHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHH
Q 019022 115 PGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLIS 194 (347)
Q Consensus 115 pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 194 (347)
-+.+.+++.++++|--+.++ -..-..++++.++|+.+... +++.. +..+++.+...|....+++
T Consensus 83 Lvg~sl~gv~~fgEW~~~~~--~~~G~~Al~liiiGv~lts~-~~~~~-------------~~~~~~~~~~kgi~~Ll~s 146 (269)
T PF06800_consen 83 LVGTSLIGVLFFGEWTTTTQ--KIIGFLALVLIIIGVILTSY-QDKKS-------------DKSSSKSNMKKGILALLIS 146 (269)
T ss_pred HHHHHHHHHhhcCCCCCcch--HHHHHHHHHHHHHHHHHhcc-ccccc-------------cccccccchhhHHHHHHHH
Confidence 88899999999999432110 01123477777788877662 22211 1112356677899999999
Q ss_pred HHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 019022 195 NLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGL 274 (347)
Q Consensus 195 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l 274 (347)
.+.|-.|.+..|.. +.+ +....+-+.+.-.+....+....+... . .+..|.. +..|+ .-.++..++..+.
T Consensus 147 tigy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~~~~~--~---~k~~~~n-il~G~-~w~ignl~~~is~ 216 (269)
T PF06800_consen 147 TIGYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFSKKPF--F---EKKSWKN-ILTGL-IWGIGNLFYLISA 216 (269)
T ss_pred HHHHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcccccc--c---ccchHHh-hHHHH-HHHHHHHHHHHhH
Confidence 99999999987763 333 666666665554444444444332111 1 1223322 34444 4457888899999
Q ss_pred ccCCceeehhhhhHHHHHHHHHHHHHhcCccchh----hhhhHHHHHHhhhh
Q 019022 275 RMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLG----SVIGGVITCVGFYT 322 (347)
Q Consensus 275 ~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~----~~iG~~li~~g~~l 322 (347)
++.+.+..=.+..+.++++.+.+.+++||+=+.. .++|+++++.|.++
T Consensus 217 ~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 217 QKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999987654 55788888888654
No 34
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.18 E-value=6.8e-10 Score=99.02 Aligned_cols=132 Identities=17% Similarity=0.267 Sum_probs=109.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHH
Q 019022 8 KNGALFTAMVAAECTIVGENIIFKLATSKGMSY--FVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLS 85 (347)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (347)
...++..+.++++++|+...+..|... ++.+| .....+++..+.+++.++ ....++ . +..+.+++...+..+
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~---~-~~~~~~~~~~~~~~~ 198 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPF-AWFLGP---N-PQALSLQWGALLYLG 198 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHH-HHhcCC---C-CCcchHHHHHHHHHH
Confidence 456799999999999999999999995 45664 455557889988888887 655322 2 223566777788888
Q ss_pred HHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhh
Q 019022 86 LVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGA 151 (347)
Q Consensus 86 ~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv 151 (347)
+++ ..++.+++.++++.+++.++.+.++.|+++.++++++++|++ +..++.|..+.+.|+
T Consensus 199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~------~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETL------SLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHhc
Confidence 887 899999999999999999999999999999999999999999 666999999999886
No 35
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.14 E-value=9.9e-11 Score=90.70 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHH
Q 019022 45 FYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAI 123 (347)
Q Consensus 45 ~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~ 123 (347)
.+|+..+.+++..+ ...+++.++..+..+++.+......|.++ ..++.+++.|+++.+ +.++++.+++|+++.++++
T Consensus 2 a~r~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLII-LLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHH-HHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 57999999998888 66642211111223445566777878888 599999999999999 5889999999999999999
Q ss_pred HhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 124 IFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 124 ~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+++|||+ +++++.+++++++|++++.
T Consensus 80 ~~~~er~------~~~~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 80 LFFKERL------SPRRWLAILLILIGVILIA 105 (113)
T ss_pred HHhcCCC------CHHHHHHHHHHHHHHHHHh
Confidence 9999999 6669999999999999988
No 36
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.13 E-value=1.1e-09 Score=89.48 Aligned_cols=138 Identities=16% Similarity=0.212 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC-----C-chHHHHHHHHHHHHHHHHHHHHhcccccccc--c-cc------Cchh
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLY-----P-AEFVVTLLYCLFATIISAPICFVGESNLSAW--R-LK------PDIE 251 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~------~~~~ 251 (347)
|..+++.|.++.+++++..|+..++. . ++.+...+....+.+.+.+.....|...... . .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999999873 2 7999999999999999999998887642111 0 00 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 252 LASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 252 ~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
+..++..|+ .........+..+++.+|...++...+..+..++.+++++||+++..+++|.++.+.|.+++.+
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 444444444 4556677778889999999999999999999999999999999999999999999999988754
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.11 E-value=1.7e-09 Score=98.35 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccccccc--ccCchhHHHHHHHHH
Q 019022 183 RWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWR--LKPDIELASIVYSAF 260 (347)
Q Consensus 183 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~g~ 260 (347)
+..+|..+.++++++|+...+..|.. .+.+ +.+..+++..++.+.+.+......+. .... ......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQW-SYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHcCHHHH-HHHHHHH
Confidence 45679999999999999999999765 5566 99999999999988777765543221 1100 0012222 2334666
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 261 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
++.+..+.++++++++.+++.++++.++.|++..+++++++||+++..+++|.++.+.|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999999999999999999999999999999987765
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.09 E-value=3.2e-09 Score=95.90 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHH
Q 019022 188 GLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 267 (347)
Q Consensus 188 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 267 (347)
..+.+.+++++|...+..|+..++.+ +. ..+....+++.+.|+...... ...|+. .+..+......+..+....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA-QVGWSR-LPATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc-cCCCCC-cchhhHHHHHHHHHHHHHHH
Confidence 46788999999999999998877644 43 355555666777776654311 122221 22334445555666788899
Q ss_pred HHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhcc
Q 019022 268 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 268 ~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 326 (347)
.++++++++.+++.++++.+++|+++.+++++++||+++..+++|..+++.|+++....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999998877643
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=89.27 Aligned_cols=216 Identities=15% Similarity=0.173 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc
Q 019022 85 SLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS 164 (347)
Q Consensus 85 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~ 164 (347)
.++..+.++.|..+++..+++.++.+..+..-|+.+++++++|+|+ ...++.+.++++.|++++.+ .++
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~------~~~kIlaailAI~GiVmiay-~DN---- 128 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRF------MGFKILAAILAIGGIVMIAY-ADN---- 128 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccch------hhhhHHHHHHHhCcEEEEEe-ccc----
Confidence 3344678899999999999999999999999999999999999999 55599999999999998883 222
Q ss_pred CCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--chHHHHHHHHHHHHHHHHHHHHh-ccccc
Q 019022 165 TASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP--AEFVVTLLYCLFATIISAPICFV-GESNL 241 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (347)
...+.+.|+.++..|+...|+|-+..|......+ |.-.++....++...+......+ .-...
T Consensus 129 ---------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V 193 (290)
T KOG4314|consen 129 ---------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV 193 (290)
T ss_pred ---------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch
Confidence 2345577999999999999999999999886654 33333333333322222111111 11112
Q ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhh
Q 019022 242 SAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFY 321 (347)
Q Consensus 242 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~ 321 (347)
+.|+......|+-+-..+.+..+ -..+.+.++....|...++-+....+--...+.++-+-..+.....|-.+|+.|..
T Consensus 194 E~~qsFA~~PWG~l~G~A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~Fi 272 (290)
T KOG4314|consen 194 EHLQSFAAAPWGCLCGAAGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFI 272 (290)
T ss_pred HHHHHHhhCCchhhhhHHHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22321122345555444443333 24556677888889888888888888889999887777788899999999999988
Q ss_pred hhhccC
Q 019022 322 TVLWGK 327 (347)
Q Consensus 322 l~~~~~ 327 (347)
+.....
T Consensus 273 LiiiP~ 278 (290)
T KOG4314|consen 273 LIIIPE 278 (290)
T ss_pred heeccc
Confidence 776543
No 40
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.03 E-value=5e-09 Score=93.33 Aligned_cols=136 Identities=10% Similarity=0.083 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccc---ccccccCchh-HHHHHHHHHH
Q 019022 186 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNL---SAWRLKPDIE-LASIVYSAFF 261 (347)
Q Consensus 186 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ll~~g~~ 261 (347)
+|..+.++++++|+...+..|.. .+.+ +.+..+++++++.+.+.+......... ...+...... +..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence 38899999999999999999984 4566 999999999999988777654432210 1111011222 333445555
Q ss_pred HHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 262 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
..+..+.++++++++.++..++.+.++.|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999999999999999999999999999999977654
No 41
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.7e-09 Score=92.77 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=191.3
Q ss_pred HHHHHHHHHhCC----CChhHHHHHHHHHHHHHHHhhhhhhhccC--CCCCC--CCchhHHHHHHHHHHHHHHHHHHHHh
Q 019022 26 ENIIFKLATSKG----MSYFVFVFYSYAATTLVLLLLFPFIFRSN--TASLP--LFKFPVISRICFLSLVGSFFRILGYT 97 (347)
Q Consensus 26 ~~~~~k~~~~~~----~~p~~~~~~r~~~~~l~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 97 (347)
....+|+.++.. -.|..++.+..+....+-..+ -...++. +...+ +.+.+..+....+.+.......+-.+
T Consensus 43 ~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~l-s~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnl 121 (347)
T KOG1442|consen 43 LVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVL-SSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNL 121 (347)
T ss_pred hhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHH-HHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccce
Confidence 344567765321 237777777777665544433 2222110 01111 24555667777777766666666679
Q ss_pred hhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCC
Q 019022 98 GIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTP 177 (347)
Q Consensus 98 al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~ 177 (347)
+++|++++...+-..+..+|+++++++++|+|- +.....++++.+.|-.+=+ +++
T Consensus 122 cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkT------s~~~~~~C~lIi~GF~lGv---dqE---------------- 176 (347)
T KOG1442|consen 122 CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKT------SFFALGCCLLIILGFGLGV---DQE---------------- 176 (347)
T ss_pred ehhhcceEEEEeccchhhhHHHHhHHhhccccc------ccccceeehhheehheecc---ccc----------------
Confidence 999999999999999999999999999999977 3346666666666543322 111
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhccccccccc--ccCc-hhHH
Q 019022 178 QSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESNLSAWR--LKPD-IELA 253 (347)
Q Consensus 178 ~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~ 253 (347)
+.++.-...|.++...|.++-|+..+..|+...... ....++++..+.+.+.++|...+.++-...+. ..+. ..|.
T Consensus 177 ~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~ 256 (347)
T KOG1442|consen 177 GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWI 256 (347)
T ss_pred cccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHH
Confidence 122445567999999999999999999997765554 34588999999999999998877654211111 1122 2444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCccccc
Q 019022 254 SIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEA 332 (347)
Q Consensus 254 ~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~~ 332 (347)
.+...|+++-.++| .-.+-+|-.+|...++-....-..-.+++..+++|.-+..-|-|-++++.|...+.+-|+.+.+
T Consensus 257 ~mtLsglfgF~mgy-vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 257 LMTLSGLFGFAMGY-VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred HHHHHHHHHHHhhh-eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 44444443332222 2233478899999999999999999999999999999999999999999998888876554443
No 42
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.98 E-value=3.1e-07 Score=83.91 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=180.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH--HHhhh-hhhh-ccCCCCCCCCchhHHHHHHH
Q 019022 8 KNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLV--LLLLF-PFIF-RSNTASLPLFKFPVISRICF 83 (347)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~--l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (347)
+-..+++..+++.++||+.++..|+. +.-+=..+ |- +.+.+. +.++. .... +.-.+.....+.+.+...++
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~--W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM--WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc--CCCchhHH--HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 35678999999999999999999995 44332211 11 111111 11110 0000 11001112346777888888
Q ss_pred HHHHHHHHHHHHHhhhhccChhhHHHH-hhhhHHHHHHHHHHhhhccc---cccccCcceeeehhhhhhhhhhhhhhccC
Q 019022 84 LSLVGSFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENL---ALSSLSTWAKIIGTLVSVSGAMLVVLYKG 159 (347)
Q Consensus 84 ~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~a~~~~~e~~---~~~~~~~~~~~~gi~l~~~Gv~li~~~~g 159 (347)
.|++-..++..++.++++.+.+.+..+ ..++-+...++..++++|=- +.+ -...-++|+++.++|+.+... .|
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~-Ag 155 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGR-AG 155 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHH-hh
Confidence 999999999999999999999999776 66999999999999988611 111 133467888888999888773 22
Q ss_pred cccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHH-------HHHHHHhhhCCchHHHHHHHHH---HHHHH
Q 019022 160 PTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWY-------IIQTQTMKLYPAEFVVTLLYCL---FATII 229 (347)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~---~~~~~ 229 (347)
...+.. +..+.+++.+..+|..+++.+++.++.|+ ...+...+...++......+.. .+...
T Consensus 156 ~~k~~~--------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~ 227 (345)
T PRK13499 156 QLKERK--------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAI 227 (345)
T ss_pred hhcccc--------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHH
Confidence 111100 00000235677899999999999999999 4444322111123332222222 33333
Q ss_pred H-HHHHHh---cccccccccc--cCc----hhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehh---hh-hHHHHHHHH
Q 019022 230 S-APICFV---GESNLSAWRL--KPD----IELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAI---FK-PLSIAIAAI 295 (347)
Q Consensus 230 ~-~~~~~~---~~~~~~~~~~--~~~----~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~---~~-~l~pv~a~i 295 (347)
. ..++.. .+++...... .+. .+...-...|+ .-.+++.++..+-.+.+...... +. .+..+++.+
T Consensus 228 ~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 228 TNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 3 333332 2121111110 011 11111133333 45567778888877776655544 44 677799999
Q ss_pred HHHHHhcCccc------hhhhhhHHHHHHhhhhhhcc
Q 019022 296 TSFIFLSEALH------LGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 296 ~~~~~~ge~~~------~~~~iG~~li~~g~~l~~~~ 326 (347)
+|.+ +||.=+ ...++|+++++.|..+...+
T Consensus 307 wGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 307 WGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9995 999755 56789999999998776544
No 43
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.96 E-value=1.1e-08 Score=87.97 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=162.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcc-ChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhh
Q 019022 71 PLFKFPVISRICFLSLVGSFFRILGYTGIAYS-SPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVS 149 (347)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~-~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~ 149 (347)
++++.+++... -.+....+.+-++++++- +...=.++..-.++.++++++++.|.|- +.+|..++++..+
T Consensus 60 ~kiplk~Y~i~---V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Y------s~~Qy~Sv~~iTi 130 (330)
T KOG1583|consen 60 PKIPLKDYAIT---VAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRY------SLRQYSSVLMITI 130 (330)
T ss_pred CCCchhhhhee---hheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhcccee------ehhhhhhHHhhhh
Confidence 44555544322 222244555666788874 5555566788899999999999988866 6669999999999
Q ss_pred hhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHH
Q 019022 150 GAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATI 228 (347)
Q Consensus 150 Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 228 (347)
|+++..+.+.++.+.. ..+.++.+..++...+..|+.+...+.+..|.-.+.++...+|+. ++.+.++|..+.+..
T Consensus 131 GiiIcTl~s~~d~~~~---~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP 207 (330)
T KOG1583|consen 131 GIIICTLFSSKDGRSK---LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLP 207 (330)
T ss_pred hheeEEeecCcchhhh---hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccc
Confidence 9999886555544331 111122233455677789999888888888888888888888875 688999998887665
Q ss_pred HHHHHHHhccc------ccccc-----cccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHH
Q 019022 229 ISAPICFVGES------NLSAW-----RLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITS 297 (347)
Q Consensus 229 ~~~~~~~~~~~------~~~~~-----~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~ 297 (347)
..+...-..-+ ..+.. ...-+..|..++...+ .+-.+.-..+..-.+.++..+++...+.-.+..+++
T Consensus 208 ~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~S 286 (330)
T KOG1583|consen 208 LFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFS 286 (330)
T ss_pred hHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhhe
Confidence 55433211000 00000 0001224444433222 332333333444567889999999999999999999
Q ss_pred HHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 298 FIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 298 ~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
.+.+..++++..|+|..+++.|.+++.
T Consensus 287 iiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 287 IIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977754
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.96 E-value=3.3e-08 Score=84.92 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 76 PVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 76 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
..|+.+..++.+..+...+...++.|.+=....+...+--+-+++.+.++-+. |+++.+..+..+...|.++..
T Consensus 104 iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGk------RY~v~d~~aA~lm~lGli~FT 177 (367)
T KOG1582|consen 104 IPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGK------RYGVHDYIAAMLMSLGLIWFT 177 (367)
T ss_pred cchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccc------cccHHHHHHHHHHHHHHHhhh
Confidence 34666777777777777777888888876655666777777777778777444 458889999999999999888
Q ss_pred hccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHH
Q 019022 156 LYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPIC 234 (347)
Q Consensus 156 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (347)
+.+.+. +.+-...|.+..-++-++.|.---.+.+..+..+ +..++.++....+.+.++...
T Consensus 178 LADs~~------------------sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~m 239 (367)
T KOG1582|consen 178 LADSQT------------------SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPM 239 (367)
T ss_pred hccccc------------------CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHH
Confidence 533332 2333457888888888888888888999988876 566888888889999888888
Q ss_pred Hhcccccccccc---cCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhh
Q 019022 235 FVGESNLSAWRL---KPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVI 311 (347)
Q Consensus 235 ~~~~~~~~~~~~---~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~i 311 (347)
..+++-...|.. .|...++....... .+.++.......++..++..++.+....-.++++++++++..++|....-
T Consensus 240 vlTge~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~ 318 (367)
T KOG1582|consen 240 VLTGELFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVW 318 (367)
T ss_pred HhcccchhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhh
Confidence 877665554532 12223444444444 55567777777889999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhccCc
Q 019022 312 GGVITCVGFYTVLWGKA 328 (347)
Q Consensus 312 G~~li~~g~~l~~~~~~ 328 (347)
|..+++.|+++-.+.|+
T Consensus 319 ~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 319 SGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hhHHHHHHHHhhcccCC
Confidence 99999999999777663
No 45
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.92 E-value=3.1e-08 Score=90.01 Aligned_cols=134 Identities=9% Similarity=0.054 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG 88 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (347)
...+.++.+.++++|+...+..|... ++.+|..... -...+.+++.++ .... . .. ...+...+...+..|++.
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~-~~~~~~~~l~~~-~~~~-~--~~-~~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAG-AEHGPATVAI-GSLIAALIFVPI-GALQ-A--GE-ALWHWSILPLGLAVAILS 218 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHH-HHHHHHHHHHHH-HHHc-c--Cc-ccCCHHHHHHHHHHHHHH
Confidence 34588899999999999999999994 5678877654 445566666666 5442 2 11 223445555667788887
Q ss_pred -HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 89 -SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 89 -~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
...+.+++.++++.++++++.+.+++|++..++++++++|++ +..+++|..+.+.|++...
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~------~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETL------TLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999988 7779999999999998876
No 46
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.91 E-value=4e-08 Score=77.33 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHH
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 266 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 266 (347)
|..+.+.+.++-+...++-|+-.++.+ +.+..... . ...... . +....+++|+++++++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~~-----~-~~~~~~-----~---------~p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWDF-----I-AALLAF-----G---------LALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhHH-----H-HHHHHH-----h---------ccHHHHHHHHHHHHHH
Confidence 677888888888888899998887765 22211110 0 000000 0 0123578899999999
Q ss_pred HHHHHHHhccCCceeehhhhhHHHHHHHHHHHH--HhcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 267 TVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFI--FLSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 267 ~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~--~~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
+.+|.+++++.+++.+.++....++...+.++. ++||++|+.+++|.++|++|+++..+++++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999998888888875 799999999999999999999998865554
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.88 E-value=4.6e-08 Score=88.84 Aligned_cols=136 Identities=15% Similarity=0.038 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG 88 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (347)
...+.+..+.++++|+...+..|.. .+ -++...+.+....+.+.+.++ ...... ......+.+.|......++++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIA-SLLSGE--RLTALPTLSGFLALGYLAVFG 222 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHH-HHHcCC--cccccCCHHHHHHHHHHHHHH
Confidence 3568899999999999999999997 33 345666778888888877777 554211 110112456677888888887
Q ss_pred -HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 89 -SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 89 -~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
...+.+++.++++.++++++.+.++.|++.+++++++++|++ +..+++|..+.+.|+.+..
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~------t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETL------SPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998 7779999999999998876
No 48
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.82 E-value=8.8e-08 Score=89.04 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHH
Q 019022 186 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 265 (347)
Q Consensus 186 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 265 (347)
.-...+++..++|+.+.++.|...+..-++....++++.++++++.++....+... .++..+...+..+...|++. .+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~ 90 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM 90 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence 45567777889999999999999977656999999999999999999887654211 11111233567777788766 56
Q ss_pred HHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHH------hcCccchhhhhhHHHHHHhhhhhhc
Q 019022 266 ITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIF------LSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 266 ~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~------~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
.+.+++.++++++++.++++.++.|+++.++++++ ++|+++..+++|.++-++|+.+...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999 6999999999999999999887664
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.82 E-value=8.5e-08 Score=87.26 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHH
Q 019022 10 GALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGS 89 (347)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 89 (347)
..+.++++.++++|+...+..|... ++.++..... ..+.+.+.+. ... .. ......+.+.+...+..++...
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~-~~~-~~--~~~~~~~~~~~~~l~~~~~~t~ 226 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIK-YFL-SP--QPAMVFSLPAIIKLLLAAAAMG 226 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHH-HHH-hc--CccccCCHHHHHHHHHHHHHHH
Confidence 4588899999999999999999984 5677765432 2233333332 222 22 1112345566777777776558
Q ss_pred HHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 90 FFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 90 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
..+.+++.++++.+++.++.+.++.|++..++++++++|++ +..+++|.++.+.|+.+..
T Consensus 227 ~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~------~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 227 FGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPL------SFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCC------cHHHHHHHHHHHHhHHHHh
Confidence 89999999999999999999999999999999999999999 6679999999999998776
No 50
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.79 E-value=3.8e-08 Score=82.20 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHH
Q 019022 41 FVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFI 120 (347)
Q Consensus 41 ~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i 120 (347)
+.+.+.+.+...+.+..+ -+. |- ...+..+.+..+..+++.....+.-..++.|.+....++..++..+.++.
T Consensus 38 flll~vQSlvcvv~l~iL-k~l-~~-----~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAy 110 (309)
T COG5070 38 FLLLAVQSLVCVVGLLIL-KFL-RL-----VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAY 110 (309)
T ss_pred hHHHHHHHHHHHHHHHHH-HHH-hH-----hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHh
Confidence 344555555554444444 222 21 11123333444555665655666677899999999999999999999999
Q ss_pred HHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 019022 121 LAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISV 200 (347)
Q Consensus 121 ~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~ 200 (347)
...+++|.|+ +-..+..-++.+.....-. .++. +... ...+..+.|.+.+..-++.-+.
T Consensus 111 gEvl~Fgg~v------tsl~l~SFilMvlSS~va~--w~D~-------q~~~------~~~~~lN~GY~Wm~~Nclssaa 169 (309)
T COG5070 111 GEVLFFGGRV------TSLELLSFILMVLSSVVAT--WGDQ-------QASA------FKAQILNPGYLWMFTNCLSSAA 169 (309)
T ss_pred hHHHHhcCcc------chhhHHHHHHHHHHHHHhc--cchh-------hHHH------HHhcccCCceEEEehhhHhHHH
Confidence 9999999987 4456665555544443322 2221 1111 1123445688888888888888
Q ss_pred HHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHhcccc-cccccc-cCchhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019022 201 WYIIQTQTMKLYP-AEFVVTLLYCLFATIISAPICFVGESN-LSAWRL-KPDIELASIVYSAFFGLSFITVVHTFGLRMK 277 (347)
Q Consensus 201 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~ 277 (347)
+-...|+-.+-.. .....++|....+..+++.+..++|+. +..... .+.....+....|+ |++.--.+-.|.++..
T Consensus 170 fVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl-~svgiSy~saWcvrVt 248 (309)
T COG5070 170 FVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVT 248 (309)
T ss_pred HHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHH-HHhhhhhccceeEeeh
Confidence 8777777654332 467889999999999999999888763 221111 12223344445555 7766677778889999
Q ss_pred CceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcccc
Q 019022 278 GPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDE 331 (347)
Q Consensus 278 ~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~ 331 (347)
+.+.-+++..+.-.-..+-|.++++|+.+...+....+=..+..++...+.+++
T Consensus 249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888887766666555444333
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.79 E-value=4e-08 Score=76.05 Aligned_cols=108 Identities=15% Similarity=0.260 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHH
Q 019022 221 LYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIF 300 (347)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~ 300 (347)
+...++.+.............+.++......+......|+++...++.+++++.++.++ .++++..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655554332221221123456667777887777899999999999995 88899999999999999999
Q ss_pred hcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 301 LSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 301 ~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
++|+++..+++|..+++.|+.++.+.+..
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998876543
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.77 E-value=6.3e-08 Score=84.32 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=130.7
Q ss_pred ChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCcc-----------cccCCCCCcc
Q 019022 103 SPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPT-----------IMSTASIPAQ 171 (347)
Q Consensus 103 ~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~-----------~~~~~~~~~~ 171 (347)
+........+..++++++......+||. +..|+++.++...|++...+.+.+. ....++.
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~------~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--- 73 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQV------TQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--- 73 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceee------ehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC---
Confidence 3444566778899999999998888877 5568999998888887544211110 0000000
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchH-HHHHHHHHHHHHHHHHHHHhcccc-cccccccCc
Q 019022 172 SLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEF-VVTLLYCLFATIISAPICFVGESN-LSAWRLKPD 249 (347)
Q Consensus 172 ~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 249 (347)
.+.....++...|....+.+..+.+...+..++..|+.+... .-+....+++.+.........+.+ ...+. .-
T Consensus 74 ---~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 148 (222)
T TIGR00803 74 ---SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFG--FF 148 (222)
T ss_pred ---CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccC--cc
Confidence 000112345677888888888888888888888766554121 122222233333222212111111 11111 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhh
Q 019022 250 IELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTV 323 (347)
Q Consensus 250 ~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~ 323 (347)
..+....+.-+++.+.+..+..+.+|+.++...+....++++++.+++++++||+++..+++|+.+++.|++++
T Consensus 149 ~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 149 IGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 01111122222356677788899999999999999999999999999999999999999999999999997653
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.74 E-value=5.6e-07 Score=81.54 Aligned_cols=229 Identities=15% Similarity=0.207 Sum_probs=126.6
Q ss_pred HHHHHHHHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhcc
Q 019022 80 RICFLSLVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYK 158 (347)
Q Consensus 80 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~ 158 (347)
..++.|++. ..+..+-+.|+.+.|++..+.+....-++.++++..++|||+ +++++.|+.+++.|..++.. .
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~------~~~~~~G~~l~i~G~~liv~-~ 123 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKL------TRRDIVGCALIILGSVLIVI-F 123 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccc------hHhHHhhHHHHHhhheeeEE-e
Confidence 345556555 667778889999999999999999999999999999999999 66699999999999988773 3
Q ss_pred CcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHH-------H
Q 019022 159 GPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIIS-------A 231 (347)
Q Consensus 159 g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 231 (347)
++..+.. .+.++-...-.++.+.. ... +...+...+.....++..++ + ..........+++... .
T Consensus 124 ~~~~~~~----~t~~~l~~~~~~~~fl~-y~~-~~~~~~~~L~~~~~~r~g~~-~-i~vyi~i~sl~Gs~tvl~~K~i~~ 195 (300)
T PF05653_consen 124 APKEEPI----HTLDELIALLSQPGFLV-YFI-LVLVLILILIFFIKPRYGRR-N-ILVYISICSLIGSFTVLSAKAISI 195 (300)
T ss_pred CCCCCCc----CCHHHHHHHhcCcceeh-hHH-HHHHHHHHHHHhhcchhccc-c-eEEEEEEeccccchhhhHHHHHHH
Confidence 3322111 00000000000111111 111 11111222222222232222 1 1100000011111100 0
Q ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHH-HHHHHHHHHHHhcCcc--ch-
Q 019022 232 PICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLS-IAIAAITSFIFLSEAL--HL- 307 (347)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~-pv~a~i~~~~~~ge~~--~~- 307 (347)
......+++ .+.. .+..|..++.+ +.+........++++++.+++.+.++.+.. ...+++-|.++++|.- +.
T Consensus 196 ~i~~~~~g~-~~f~--~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~ 271 (300)
T PF05653_consen 196 LIKLTFSGD-NQFT--YPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAW 271 (300)
T ss_pred HHHHHhcCc-hhhh--hhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHH
Confidence 000011111 1111 22344333333 335666677788999999999988776654 4555666778888753 44
Q ss_pred ---hhhhhHHHHHHhhhhhhccC
Q 019022 308 ---GSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 308 ---~~~iG~~li~~g~~l~~~~~ 327 (347)
....|+.+++.|+++....|
T Consensus 272 ~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 272 QIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHHHhhheeeccC
Confidence 34577888889988876544
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.72 E-value=4.5e-07 Score=82.67 Aligned_cols=127 Identities=8% Similarity=0.068 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHH
Q 019022 188 GLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 267 (347)
Q Consensus 188 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 267 (347)
..+.++++++|+...+..|...++.+ |....++++.++++...++.. .. . ..+......|+......+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~-~--------~~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RP-K--------VPLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CC-C--------CchHHHHHHHHHHHHHHH
Confidence 35688889999999999999888776 999999999988776655431 11 1 112233344554444555
Q ss_pred HHHHHHhcc-CCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhcc
Q 019022 268 VVHTFGLRM-KGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 268 ~~~~~~l~~-~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 326 (347)
.+++.+.++ .++..++++..+.|+++.++++++++|+++..+++|+++.+.|+.+..+.
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 667778876 57889999999999999999999999999999999999999998877653
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.58 E-value=1.4e-06 Score=71.08 Aligned_cols=133 Identities=21% Similarity=0.340 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCC---C-------c
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSK------GMSYFVFVFYSYAATTLVLLLLFPFIF-RSNTASLPL---F-------K 74 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~------~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~---~-------~ 74 (347)
|.+.++.+.++.+...+..|..+.+ ..++.++..+-...+.+.+.+. .... +. +..+. . +
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~-~~~~e~~--~~~~~~~~~~~~~~~~~ 77 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPL-AFLLEGP--QLSSFFSEIFGEELSSD 77 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHH-HHHHhhh--hhhhHHHHhhhhhhcch
Confidence 4567889999999999999999865 7999999999999999999988 6664 22 10000 0 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhh
Q 019022 75 FPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAML 153 (347)
Q Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 153 (347)
.+.+..++..|++....+...+..+++++|...+++.....+.+.+++.++++|++ +..++.|+++++.|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~------t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 78 PNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPI------TPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcC------CHHHHHHHHHHHHHHhe
Confidence 34455677777777999999999999999999999999999999999999999999 66799999999999865
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.53 E-value=1.9e-06 Score=78.64 Aligned_cols=121 Identities=12% Similarity=0.106 Sum_probs=96.0
Q ss_pred HHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 019022 200 VWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGP 279 (347)
Q Consensus 200 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~ 279 (347)
.+++++|...++.+.|......++..+.+...+........... .+..++..++..|++ .+..+.+.+.++++.++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---ISSALLKLLLPVAIV-HTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccH
Confidence 34456788887766699999999988877765552111111111 134478888888886 57788999999999999
Q ss_pred eeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 280 VYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 280 ~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
+..+++..+.|+++.++++++++|+++..+++|..+++.|+.+..
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999987653
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.49 E-value=1.3e-06 Score=67.06 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 257 YSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 257 ~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
..++.+.+.++.++..++++.+...+-.+..+.++++.+.+++++||+++..+++|..+++.|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34446788899999999999999999999999999999999999999999999999999999987754
No 58
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.48 E-value=2.6e-06 Score=74.61 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhccccccccc-ccCchhHHHHHHHHHHHH
Q 019022 185 VIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWR-LKPDIELASIVYSAFFGL 263 (347)
Q Consensus 185 ~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~g~~~~ 263 (347)
..|.++++.+-+.|+....+.|.+ ++.+ +.++..++.+.+...+........+...-++ ...+..+......+...+
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 459999999999999888777664 6666 8899999999998888877766644322222 123446666666666554
Q ss_pred HHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 264 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
..+..|.++..+..+.++|.-+++.|++.+++|.++++|+++..|++...+..+|+....+
T Consensus 84 -~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 84 -LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred -HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999887665
No 59
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.47 E-value=8.1e-06 Score=76.04 Aligned_cols=136 Identities=14% Similarity=0.198 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHH
Q 019022 188 GLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFIT 267 (347)
Q Consensus 188 ~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 267 (347)
..+.+.-=.+...++...|...+..+-|.++..+++..+.+.+............... .....+..++.+|++.. ..+
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~ 128 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVH 128 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHH
Confidence 3343333344456677788888777669999999999998876554322111111110 02236677778888554 457
Q ss_pred HHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 268 VVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 268 ~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
...+.++++.+++.+.++..++|++++++++++++|+++..+++|++++++|+.+...
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 7777999999999999999999999999999999999999999999999999887653
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.46 E-value=2.9e-06 Score=76.97 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH---HHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 10 GALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYA---ATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
.|+.+..+++.+.++......|.. +.+|...++.... ++..++... . ++ .+ +. +.+..+..++.|+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~-~---~~--~~-~~-~~~~~~~~~~~Gi 219 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLG-H---IL--AK-PL-KKYAILLNILPGL 219 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHH-H---hc--cc-ch-HHHHHHHHHHHHH
Confidence 679999999999999999999976 4888888555554 333333322 1 22 22 22 3444555666888
Q ss_pred HHHHHHHHHHhhhh-ccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceee----ehhhhhhhhhhhhh
Q 019022 87 VGSFFRILGYTGIA-YSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKI----IGTLVSVSGAMLVV 155 (347)
Q Consensus 87 ~~~~~~~~~~~al~-~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~----~gi~l~~~Gv~li~ 155 (347)
+....+.+++.+.+ +.+++.+.++.+..|+...+.+.+++||+. +++++ +|.++.+.|+.++.
T Consensus 220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~------~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK------TKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC------CcceeehhHHHHHHHHHHHHHHh
Confidence 88888999999999 999999999999999999999999999998 55688 99999999988765
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.33 E-value=4.3e-06 Score=64.17 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 85 SLVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 85 g~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
++++ ..+..++..+++..+.+.+..+.++.++++.+++++++|||+ +.++++|+.+.+.|++++.
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~l------s~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPV------SPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHh
Confidence 3344 889999999999999999999988999999999999999999 6669999999999998875
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=4.9e-06 Score=73.77 Aligned_cols=278 Identities=17% Similarity=0.157 Sum_probs=158.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHH
Q 019022 6 SYKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLS 85 (347)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 85 (347)
..+...+....+...++.|.+..+-|+...+ ... ... |.+..-.+..+. ..+..|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-----~~~-----ra~~gg~~yl~~----~~Ww~G 70 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-----SGL-----RAGEGGYGYLKE----PLWWAG 70 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-----hcc-----cccCCCcchhhh----HHHHHH
Confidence 3456677777777788888888887777421 100 011 110011022211 355566
Q ss_pred HHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc
Q 019022 86 LVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS 164 (347)
Q Consensus 86 ~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~ 164 (347)
++. ..+...-|.|+.|.|++..+.+-+++-+..++++..++|||+ +....+|+.++++|..+++ ..+|..+.
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl------~~~g~lGc~l~v~Gst~iV-~haP~e~~ 143 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKL------NLLGILGCVLCVVGSTTIV-IHAPKEQE 143 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHH------HHhhhhheeEEecccEEEE-EecCcccc
Confidence 666 777777789999999999999999999999999999999999 5559999999999999988 34443322
Q ss_pred CCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHH----------HH
Q 019022 165 TASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAP----------IC 234 (347)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 234 (347)
..+.+...+ -..++.+..=..+.++... +-....+ +++. ......|....+.+..+- .-
T Consensus 144 i~t~~el~~----~~~~~~Fliy~~~iil~~~---il~~~~~---p~~g-~tnilvyi~i~s~iGS~tV~svKalg~aik 212 (335)
T KOG2922|consen 144 IESVEEVWE----LATEPGFLVYVIIIILIVL---ILIFFYA---PRYG-QTNILVYIGICSLIGSLTVMSVKALGIAIK 212 (335)
T ss_pred cccHHHHHH----HhcCccHHHHHHHHHHHHH---HHheeec---cccc-ccceeehhhHhhhhcceeeeeHHHHHHHHH
Confidence 211111000 0112222211222221111 1111111 1222 222222222222221100 00
Q ss_pred HhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhH-HHHHHHHHHHHHhcCccc--h----
Q 019022 235 FVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPL-SIAIAAITSFIFLSEALH--L---- 307 (347)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l-~pv~a~i~~~~~~ge~~~--~---- 307 (347)
....+..+ ...+..|..++.+.. |...-....+++++..+++.++++.+. -..++++-+.++++|.-. .
T Consensus 213 lt~~g~~q---l~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~ 288 (335)
T KOG2922|consen 213 LTFSGNNQ---LFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIA 288 (335)
T ss_pred HHhcCCcc---cccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 11111111 113345555555554 555666778899999999988877665 455667778888887532 2
Q ss_pred hhhhhHHHHHHhhhhhhccCccc
Q 019022 308 GSVIGGVITCVGFYTVLWGKAND 330 (347)
Q Consensus 308 ~~~iG~~li~~g~~l~~~~~~~~ 330 (347)
....|++.++.|+++....|.++
T Consensus 289 ~~~~Gf~ti~~G~flL~~~kd~~ 311 (335)
T KOG2922|consen 289 GELCGFVTIFLGIFLLHRTKDME 311 (335)
T ss_pred HHHHhHHHhhheeeEeeeecccc
Confidence 45688999999998886655433
No 63
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.23 E-value=5.7e-05 Score=67.99 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHH
Q 019022 184 WVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGL 263 (347)
Q Consensus 184 ~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~ 263 (347)
...+....+..++.|+......+...+...+...........+.....+.... +. ..... ....+......+.+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRP--ALRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccc--cccchHHHHHHHHHHH
Confidence 44577888888899999999998887763325555555666666663332221 11 10111 1112455667777788
Q ss_pred HHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHH-HHhcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 264 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSF-IFLSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~-~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
...+.+++.++++.++..++.+.++.|++..++++ ++++|+++..+++|..+.+.|+++..+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 89999999999999999999999999999999997 6679999999999999999999888775543
No 64
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.18 E-value=2.5e-07 Score=78.56 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (347)
.++..++=++.||..+.+..+. +=.|.+.+.--...+.++.+.. .++ .+ |..+.+.+..-++.|.+...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv-~~~-~~-----p~~T~~~~iv~~isG~~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIV-FLF-VS-----PELTLTIFIVGFISGAFWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHH-hee-ec-----CccchhhHHHHHHhhhHhhhh
Confidence 4667788889999998887666 4566666554444444444444 333 33 445666677777778888999
Q ss_pred HHHHHhhhhccChhhHHHHh-hhhHHHHHHHHHHhhhccccccccCccee----eehhhhhhhhhhhhhhccCcccccCC
Q 019022 92 RILGYTGIAYSSPTLASMIG-NLTPGFTFILAIIFRMENLALSSLSTWAK----IIGTLVSVSGAMLVVLYKGPTIMSTA 166 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~a~~~~~e~~~~~~~~~~~~----~~gi~l~~~Gv~li~~~~g~~~~~~~ 166 (347)
+...+.|+++.+++.+..+. .++-+-+.+++.+.++|=- +..+ .+++++.+.|+.+-. .+++..
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~------t~~~~IlG~iAliliviG~~lTs-~~~~~n---- 141 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWT------TPTQIILGFIALILIVIGIYLTS-KQDRNN---- 141 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccC------cchhHHHHHHHHHHHHHhheEee-eecccc----
Confidence 99999999999999998884 4888899999999999932 2222 233444444444433 122111
Q ss_pred CCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 019022 167 SIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRL 246 (347)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (347)
.+.++.++..+|....+.|.+.|-.|.+..+...-+.-+.+.-....+..+++.+ ....++ . .
T Consensus 142 ---------k~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~---~~~~~~-~--~-- 204 (288)
T COG4975 142 ---------KEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALIL---GFFKME-K--R-- 204 (288)
T ss_pred ---------ccccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHH---hhcccc-c--c--
Confidence 1123455567899999999999999998888765221122223333333333322 221111 0 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhh----hhhHHHHHHhhhh
Q 019022 247 KPDIELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGS----VIGGVITCVGFYT 322 (347)
Q Consensus 247 ~~~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~----~iG~~li~~g~~l 322 (347)
.+.....-+.-|+ .-+.+...+..+.++.+.+..=.++.+..+++.+-+.++++|+=|..+ ++|.++++.|..+
T Consensus 205 -~~K~t~~nii~G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 205 -FNKYTWLNIIPGL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred -hHHHHHHHHhhHH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 2223333345555 344678888888889999888888899999999999999999887654 5788888887554
Q ss_pred h
Q 019022 323 V 323 (347)
Q Consensus 323 ~ 323 (347)
.
T Consensus 283 l 283 (288)
T COG4975 283 L 283 (288)
T ss_pred h
Confidence 3
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.15 E-value=5.3e-05 Score=69.39 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=111.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCCCchhHHHHHHHH
Q 019022 6 SYKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIF-RSNTASLPLFKFPVISRICFL 84 (347)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (347)
..+..+|=+.++.+++++|.+.+.-+... ++.++.++..+--+.+.++..+. +... +++.+. ..++.+....++..
T Consensus 163 ~~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq-~~ile~~~i~~-~~w~~~~~~~~v~~ 239 (334)
T PF06027_consen 163 GSNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQ-LAILERSGIES-IHWTSQVIGLLVGY 239 (334)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHH-HHheehhhhhc-cCCChhhHHHHHHH
Confidence 35678899999999999999999999997 57899998888888888887777 5544 543333 23344444444444
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhh
Q 019022 85 SLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 156 (347)
Q Consensus 85 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 156 (347)
+++....+.+.-..+++++|....+=.-+..++.+++..+++++++ ++..++|.++.++|.++...
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~------~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKF------SWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccc------cHHHHHHHHHHHHHhheEEc
Confidence 4444666677788899999998888778899999999999999999 77799999999999988763
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.03 E-value=3e-05 Score=59.98 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCceeeh-hhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCc
Q 019022 258 SAFFGLSFITVVHTFGLRMKGPVYTA-IFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 328 (347)
Q Consensus 258 ~g~~~~~~~~~~~~~~l~~~~~~~~s-~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~ 328 (347)
..+.+.++++.++..++++.+...+= ...-+..+.+.+.+++++||++++.+++|..+|+.|++......+
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 34557778999999999999988874 445788899999999999999999999999999999988866543
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00015 Score=62.20 Aligned_cols=137 Identities=11% Similarity=0.042 Sum_probs=112.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
.-...+..+.+.+..+|+...+..|.+ .+..+--.-+..-+.+++++.+|+ ...... . ...++......+..++
T Consensus 144 ~lDp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pi-g~~~ag--~--~l~~p~ll~laLgvav 217 (292)
T COG5006 144 SLDPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPI-GAAQAG--P--ALFSPSLLPLALGVAV 217 (292)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhh-hhhhcc--h--hhcChHHHHHHHHHHH
Confidence 445678889999999999999999999 446666677788899999999999 664311 1 2345566677777888
Q ss_pred HH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 87 VG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 87 ~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+. ...+.+=..+++..+...-+++.++.|.+.++.++++++|++ |..||.++...+.+..-..
T Consensus 218 lSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~l------s~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 218 LSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETL------TLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhccc
Confidence 88 889999999999999999999999999999999999999999 6669999998887765433
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.90 E-value=7.1e-05 Score=57.11 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 259 AFFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 259 g~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
.+++.++++.++..++++.+...+ ++..-+..+.+.+.+++++||++++.+++|..+|+.|++..+..+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455677889999999999998887 445668889999999999999999999999999999999886644
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.88 E-value=0.00039 Score=63.48 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhhCC-c--hHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 019022 199 SVWYIIQTQTMKLYP-A--EFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFGLR 275 (347)
Q Consensus 199 a~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~l~ 275 (347)
..+.+.+++..++.. . +..+++.++....+...+......... . ....+......++ ...++..+-+.+++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~-~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK--S---RKIPLKKYAILSF-LFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC--C---CcChHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344567777776543 3 778888888888887777666554111 1 1223334444454 56678889999999
Q ss_pred cCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcccccCC
Q 019022 276 MKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEAGK 334 (347)
Q Consensus 276 ~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~~~~ 334 (347)
+++...-.++....|+..++++++++|++.+..++++..++..|+.+....+.++++++
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~ 145 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS 145 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence 99999999999999999999999999999999999999999999998877655444433
No 70
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.85 E-value=0.00027 Score=55.63 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH-HH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG-SF 90 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 90 (347)
+++.+++..++-+...++.|..++ ..+....... . + .. ...... ....+..|+.. ..
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~-~----~---~~-~~~~~~------------p~~~i~lgl~~~~l 60 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWD-F----I---AA-LLAFGL------------ALRAVLLGLAGYAL 60 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhH-H----H---HH-HHHHhc------------cHHHHHHHHHHHHH
Confidence 566777777777888888898863 4443332211 0 0 11 000011 11245666666 99
Q ss_pred HHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHH--hhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 91 FRILGYTGIAYSSPTLASMIGNLTPGFTFILAII--FRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 91 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~--~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+..++..+++..+++.+..+....+.++.+.++. ++||++ |..+++|+++.++|+.++.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~l------s~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETF------SLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999889888885 899999 6669999999999999876
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.75 E-value=0.00034 Score=61.73 Aligned_cols=133 Identities=12% Similarity=0.026 Sum_probs=94.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
.+..|+.+.++..++.+....++.|.. +++|....+=....-.+....+ ... .+ + + ...+..++-++.|+
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~-~~~-~~--~--~-~~~k~~~~nil~G~ 203 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIF-NLF-SK--K--P-FFEKKSWKNILTGL 203 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHH-hhc-cc--c--c-ccccchHHhhHHHH
Confidence 345789999999999999988888875 6888776664443333333333 332 12 1 1 22334566788999
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhh
Q 019022 87 VGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGA 151 (347)
Q Consensus 87 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv 151 (347)
+...++.+++.+.+..+.+.+-.+.++.++...+-+.+++||+=+.|+ -...++|+++.+.|.
T Consensus 204 ~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 204 IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGA 266 (269)
T ss_pred HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999763321 112334444444444
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.74 E-value=0.00079 Score=53.78 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHH
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 266 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 266 (347)
...+++.++.+-++...++.++.++..++....+..+..+.+.+.......+.. ......+..|. .++|-+.++..
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w--~~lGG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWW--AYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChH--HhccHHHHHHH
Confidence 356788888999999999999998887799999999999999998888877653 22211222332 33455566677
Q ss_pred HHHHHHHhccCCceeehhhh-hHHHHHHHHHHHH-H---hcCccchhhhhhHHHHHHhhhh
Q 019022 267 TVVHTFGLRMKGPVYTAIFK-PLSIAIAAITSFI-F---LSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 267 ~~~~~~~l~~~~~~~~s~~~-~l~pv~a~i~~~~-~---~ge~~~~~~~iG~~li~~g~~l 322 (347)
..+.....++.+++....+. .-+.+.+.++|.+ + -++++++.+++|..+++.|+++
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 88888899999998876554 4466777888876 2 3467899999999999999764
No 73
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.72 E-value=1.3e-05 Score=69.21 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHH
Q 019022 183 RWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFG 262 (347)
Q Consensus 183 ~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~ 262 (347)
.-.+|..+...+ .++...++..++..+.. |.+.....+++-.++..|..+...... +- ++..-.+++.=|+ .
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~v--~g--p~g~R~~LiLRg~-m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQPV--IG--PEGKRKWLILRGF-M 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeeee--ec--CCCcEEEEEeehh-h
Confidence 445788888887 77788888888877664 454444444444444444333222211 11 1111122233333 3
Q ss_pred HHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 263 LSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
+..+..+.++++++.+-+.+..+.+..|+++++++|++++|+.|....+|..+.+.|+++..+..
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 33677888899999999999999999999999999999999999999999999999999987754
No 74
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.72 E-value=0.012 Score=53.39 Aligned_cols=302 Identities=13% Similarity=0.045 Sum_probs=180.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhh-hhhhccCC-CCCCCCchhHHHHHHHHH
Q 019022 8 KNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLF-PFIFRSNT-ASLPLFKFPVISRICFLS 85 (347)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~g 85 (347)
.-..+++...+..++-++.++-.|.. ++.+=...=.....++.+ ..|.+ ++..-.+. +.....+........+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 34568888888999999999999998 455433333333333332 33331 11111110 111234556677788899
Q ss_pred HHHHHHHHHHHhhhhccChhhHHH-HhhhhHHHHHHHHHHhhhc--cccccccCcceeeehhhhhhhhhhhhhhccCccc
Q 019022 86 LVGSFFRILGYTGIAYSSPTLASM-IGNLTPGFTFILAIIFRME--NLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTI 162 (347)
Q Consensus 86 ~~~~~~~~~~~~al~~~~~~~~~~-l~~~~pi~~~i~a~~~~~e--~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~ 162 (347)
++-......|-.+++|++.+..+- ...+..++-.++-.++.++ .+ ..++-....++|++++++|+.+.. ..|..-
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l-~~~~~g~~vL~Gv~v~LiGIai~g-~AG~~K 158 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDEL-LATPSGQIVLLGVAVCLIGIAICG-KAGSMK 158 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCccccc-ccCCCchhhhhHHHHHHHHHHHHh-HHHHhh
Confidence 988888889999999999998854 4667778877777776542 12 112335678899999999999887 333321
Q ss_pred ccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHh-------hhCCchH----HHHHHHHHHHHHHHH
Q 019022 163 MSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTM-------KLYPAEF----VVTLLYCLFATIISA 231 (347)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~-------~~~~~~~----~~~~~~~~~~~~~~~ 231 (347)
+.. .+...++.+..+|.++++.|++..|.++.-...-. +...++. ......+..+.+..+
T Consensus 159 e~~---------~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~ 229 (344)
T PF06379_consen 159 EKE---------LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNL 229 (344)
T ss_pred hhh---------hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHH
Confidence 111 11123455677999999999988888775443221 1011122 233444555666777
Q ss_pred HHHHhccc---ccccccc----cC--chhHHHHHHHHHHHHHHHHHHHHHHhccCCce----eehhhhhHHHHHHHHHHH
Q 019022 232 PICFVGES---NLSAWRL----KP--DIELASIVYSAFFGLSFITVVHTFGLRMKGPV----YTAIFKPLSIAIAAITSF 298 (347)
Q Consensus 232 ~~~~~~~~---~~~~~~~----~~--~~~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~----~~s~~~~l~pv~a~i~~~ 298 (347)
.++.+... +...+.. .+ ..++..-+..|++-. ..+.+|-.+-.+++.. --.+.+.+..+++-+++.
T Consensus 230 ~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy-~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl 308 (344)
T PF06379_consen 230 IYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWY-SQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL 308 (344)
T ss_pred HHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH
Confidence 77765422 2211111 01 124444444555333 5666666666666643 335677778888888887
Q ss_pred HHhcCc------cchhhhhhHHHHHHhhhhhhc
Q 019022 299 IFLSEA------LHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 299 ~~~ge~------~~~~~~iG~~li~~g~~l~~~ 325 (347)
+ ++|. .-...++|+.+++.++.++-.
T Consensus 309 ~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 309 I-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred H-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 6 6763 334457888888888776543
No 75
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.66 E-value=0.00019 Score=65.15 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=88.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc-hHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHH
Q 019022 181 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPA-EFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSA 259 (347)
Q Consensus 181 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g 259 (347)
+.++..|..+++.|+++.+....++|+..+|.+. +..-. ...... .-+..| +.|
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~-------------------~~~~~~--l~~~~W----~~G 56 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG-------------------SGGRSY--LRRPLW----WIG 56 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------------------chhhHH--HhhHHH----HHH
Confidence 3466789999999999999999999998776551 00000 000000 001112 222
Q ss_pred HHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 260 FFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
....+++..+...++...+++.++++..+..++..+++..++||+++...++|+++++.|..+...
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 333445667778899999999999999999999999999999999999999999999999766543
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00026 Score=53.01 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 262 GLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
+.+.+|.+...++|+++...+ ++..-.-.+.+.+.+++++||++++.+++|..++++|+...+...
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 556789999999999988776 788888899999999999999999999999999999988876543
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.62 E-value=0.0011 Score=50.41 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 260 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
+.+.++++.+...++|+.+...+ ++..-+..+.+.+.+++++||++++.+++|..+|+.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34667889999999999998877 677778889999999999999999999999999999988753
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.55 E-value=0.00043 Score=52.27 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 260 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
+.+.+.++.+...++|+.+...+ ++..-+..+.+.+.+++++||++++.+++|..+++.|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44667899999999999988877 6777788999999999999999999999999999999887654
No 79
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.45 E-value=0.0026 Score=50.82 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 019022 14 TAMVAAECTIVGENIIFKLATSKGMS-YFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFR 92 (347)
Q Consensus 14 ~~~l~~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 92 (347)
+..+.+.++-+....++-.. ++..+ |...+++-+..+++++..+ ....++ ...+..+.. .++.++-|++++...
T Consensus 4 lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~-~~~~~~--~~~~~~~~~-p~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLII-LLITGR--PSLASLSSV-PWWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHH-HHHhcc--cccchhccC-ChHHhccHHHHHHHH
Confidence 45566666677777777666 35555 9999999999999998888 665433 221323323 345666999999999
Q ss_pred HHHHhhhhccChhhHHHHhhhhHHHHHHHHHHh--h-hccccccccCcceeeehhhhhhhhhhh
Q 019022 93 ILGYTGIAYSSPTLASMIGNLTPGFTFILAIIF--R-MENLALSSLSTWAKIIGTLVSVSGAML 153 (347)
Q Consensus 93 ~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~--~-~e~~~~~~~~~~~~~~gi~l~~~Gv~l 153 (347)
.+....+...+++.+..+.-+.-+...++---+ + -|| ++.++.|+.|+++.++|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPK----RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999888776555555544432 1 122 23377899999999999864
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.31 E-value=0.002 Score=47.68 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH
Q 019022 260 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVIT 316 (347)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li 316 (347)
+.+.++++.++.+++|+.+.+.+ ++..-+..+...+.+.+++||++|+.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34677889999999999999988 5566789999999999999999999999999876
No 81
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0088 Score=47.91 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHH
Q 019022 186 IGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSF 265 (347)
Q Consensus 186 ~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~ 265 (347)
....+++.++.+-.+......++.+..++|....+..+..+.+.+..+.++.++. ..+....+..|.. ..-|+ ..+.
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW~-~~GG~-lGa~ 81 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWWA-WIGGL-LGAI 81 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchHH-HHccc-hhhh
Confidence 4677888899999999999999988877799999999999999998888885443 2222222223322 22233 3323
Q ss_pred HHHHHHHHhccCCcee-ehhhhhHHHHHHHHHHHHHhc----CccchhhhhhHHHHHHhhhhhhccC
Q 019022 266 ITVVHTFGLRMKGPVY-TAIFKPLSIAIAAITSFIFLS----EALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 266 ~~~~~~~~l~~~~~~~-~s~~~~l~pv~a~i~~~~~~g----e~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
-...-....++.+++. ......-+.+.+.++|.+=+. .+++...++|.+++++|+++..+++
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 2333344456665554 455666677888888877554 5689999999999999965555443
No 82
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.22 E-value=0.004 Score=47.35 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccChhhHHH-HhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 81 ICFLSLVGSFFRILGYTGIAYSSPTLASM-IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 81 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~-l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
....-++...++.++..++++.|.+.+-. -....-+.+.+++.+++||++ ++.|+.|+.+.+.|++.+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~------~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL------NRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHh
Confidence 33344444788889999999999999854 567899999999999999999 667999999999999775
No 83
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.19 E-value=0.0015 Score=57.53 Aligned_cols=79 Identities=13% Similarity=0.148 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCccc
Q 019022 251 ELASIVYSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAND 330 (347)
Q Consensus 251 ~~~~ll~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~ 330 (347)
+......-++ ..++...+.+.++++.+|+...++...+.+++.++++++++++++..||++..+.+.|+.+........
T Consensus 16 ~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3444444444 466788899999999999999999999999999999999999999999999999999999877665544
No 84
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.13 E-value=0.0012 Score=51.08 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccChhhHHHH-hhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 82 CFLSLVGSFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 82 ~~~g~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
.+.-++.+.++.++..++++.+.+.+-.+ ....-+.+.+++.+++||++ +..++.|+.+.+.|++.+-
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~------s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESL------SLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHhh
Confidence 33334448889999999999999999666 57999999999999999999 6669999999999998875
No 85
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0014 Score=49.06 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccChhhH-HHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 82 CFLSLVGSFFRILGYTGIAYSSPTLA-SMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 82 ~~~g~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+..-++...++.++..++++.+.+.+ ++-.....+.+.+.+++++||++ +..+++++.+.++|++.+-
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l------~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESL------SLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcC------CHHHHHHHHHHHHHHHHhh
Confidence 33334447788899999999999998 55577999999999999999999 6669999999999998764
No 86
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.94 E-value=0.003 Score=47.69 Aligned_cols=67 Identities=12% Similarity=-0.055 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhhhccChhhHHH-HhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 83 FLSLVGSFFRILGYTGIAYSSPTLASM-IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 83 ~~g~~~~~~~~~~~~al~~~~~~~~~~-l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
..-++...++.++..+++..|.+.+-. -.....+.+.+++.+++||++ ++.++.|+.+.+.|++.+-
T Consensus 34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~------~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA------SPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHhhh
Confidence 333344888889999999999999855 466999999999999999999 6679999999999998764
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.00062 Score=58.35 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHH
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 266 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 266 (347)
+.+++++=++.|+..-....+.. ..|.+-..-..+.+.++.+.+.++..+ .. +...+..-...|.+.+ ++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~lGtT~GALifaiiv~~~~~p-~~-----T~~~~iv~~isG~~Ws-~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG---GKPYQQTLGTTLGALIFAIIVFLFVSP-EL-----TLTIFIVGFISGAFWS-FG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC---CChhHhhhhccHHHHHHHHHHheeecC-cc-----chhhHHHHHHhhhHhh-hh
Confidence 45778888888887665555432 225554444444444444444443222 11 2223444445555444 78
Q ss_pred HHHHHHHhccCCceeehhhhh-HHHHHHHHHHHHHhcCccchhhh----hhHHHHHHhhhhhhccCcccccC
Q 019022 267 TVVHTFGLRMKGPVYTAIFKP-LSIAIAAITSFIFLSEALHLGSV----IGGVITCVGFYTVLWGKANDEAG 333 (347)
Q Consensus 267 ~~~~~~~l~~~~~~~~s~~~~-l~pv~a~i~~~~~~ge~~~~~~~----iG~~li~~g~~l~~~~~~~~~~~ 333 (347)
+...+++++..+++++.+++. .+-+-+.+++.+.+||..+..+. +..++++.|+++..++++.++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 999999999999999988765 56777889999999999988765 45667778888877666544433
No 88
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.90 E-value=0.003 Score=48.19 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhccChhhHHHH-hhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 88 GSFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 88 ~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
...++.++..+++..|.+.+-.+ ....-+.+.+++++++||++ ++.++.|+.+.+.|++.+-
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~------~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------DLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHh
Confidence 37788889999999999999666 66899999999999999999 6679999999999998875
No 89
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.87 E-value=0.034 Score=51.25 Aligned_cols=147 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred ccchhHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChhHHHHHHHH---HHHHHHH-hhhhhhh-ccCCCC----C
Q 019022 7 YKNGALFTAMVAAECTIVGEN-------IIFKLATSKGMSYFVFVFYSYA---ATTLVLL-LLFPFIF-RSNTAS----L 70 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~-------~~~k~~~~~~~~p~~~~~~r~~---~~~l~l~-~~~~~~~-~~~~~~----~ 70 (347)
.+..|+.+.++++.+..+..+ +..+.+...+.+|.....-.+. .+.++.- .+ +.+. +++++. .
T Consensus 170 ~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~-~~~~~~k~~~~~~~~~ 248 (345)
T PRK13499 170 FNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGF-CFIRLAKNKDLSLKAD 248 (345)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCCcccchh
Confidence 345789999999999999988 6666654457777766655554 4443333 33 3432 232121 0
Q ss_pred CCCchhHHHH----HHHHHHHHHHHHHHHHhhhhccChhhHHH---Hh-hhhHHHHHHHHHHhhhccccccccCcceeee
Q 019022 71 PLFKFPVISR----ICFLSLVGSFFRILGYTGIAYSSPTLASM---IG-NLTPGFTFILAIIFRMENLALSSLSTWAKII 142 (347)
Q Consensus 71 ~~~~~~~~~~----~~~~g~~~~~~~~~~~~al~~~~~~~~~~---l~-~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~ 142 (347)
+..+++.+.+ ..+.|++....+.++..+-...+.+.+.. +. ++..++..+-+. ++||+=...+|..+.-++
T Consensus 249 ~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~ 327 (345)
T PRK13499 249 FSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSL 327 (345)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHH
Confidence 1112222233 36667777888888999888886665555 55 445566666666 699976544455566788
Q ss_pred hhhhhhhhhhhhh
Q 019022 143 GTLVSVSGAMLVV 155 (347)
Q Consensus 143 gi~l~~~Gv~li~ 155 (347)
|+++.+.|+.++.
T Consensus 328 G~vliI~g~~lig 340 (345)
T PRK13499 328 GCVVIILAANIVG 340 (345)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888876
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.81 E-value=0.0032 Score=47.95 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 019022 17 VAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRILGY 96 (347)
Q Consensus 17 l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 96 (347)
++..++||.+.++.|... ++.++..-.. +..-... . + . ++ + ++..-=.++-.+...|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~-~--L---l-~n------------~-~y~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIK-F--L---L-LN------------P-KYIIPFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHH-H--H---H-Hh------------H-HHHHHHHHHHHHHHHHH
Confidence 456789999999999995 5665554431 2111111 0 0 0 11 2 22222233466677888
Q ss_pred hhhhccChhhHHHHh-hhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 97 TGIAYSSPTLASMIG-NLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 97 ~al~~~~~~~~~~l~-~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
+.+...+.|.+..+. ++.=++|++.++++.+|.. ++++++|+++.+.|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~------~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVI------SRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCccc------chhHHHHHHHHHcCeeee
Confidence 999999999998885 7888999999988777766 555899999999998764
No 91
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.087 Score=48.01 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHhhhCC---chHHHHHHHHHHHHHHHHHHHHhcccc-----cccc---cccCchhHHHHHHHHHHHH
Q 019022 195 NLLISVWYIIQTQTMKLYP---AEFVVTLLYCLFATIISAPICFVGESN-----LSAW---RLKPDIELASIVYSAFFGL 263 (347)
Q Consensus 195 ~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~ll~~g~~~~ 263 (347)
.+.++......|...++.+ .+.+..+..-++-.+++....+..+.. .... ....+.+...+..-++ ..
T Consensus 24 t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~-iY 102 (345)
T KOG2234|consen 24 TAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPAL-IY 102 (345)
T ss_pred HHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHH-HH
Confidence 3444555555555443321 366777777777777777766655311 0000 0001112333333233 44
Q ss_pred HHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCccccc
Q 019022 264 SFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEA 332 (347)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~~ 332 (347)
++-..+++.++.+.+|+...+...+..+.+.++..++++++++..||...++.+.|+.++.....++..
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 556678899999999999999999999999999999999999999999999999999998854444433
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.72 E-value=0.016 Score=50.98 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 91 (347)
|+++.+.+.+++|++++-.|.. +.-|++.+..+-.....+.-+.. .+. +. . ++. .+...+.|.+.+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v-~~~-~~---~-p~f----~p~amlgG~lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVV-NLI-LG---F-PPF----YPWAMLGGALWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHH-HHh-cC---C-Ccc----eeHHHhhhhhhhcC
Confidence 4677899999999999999998 35688888877776666655555 443 22 2 222 34567777888999
Q ss_pred HHHHHhhhhccChhhHHHHhhhhHHHHH-HHHHH-hhhccccccccCcceeeehhhhhhhhhhhhhhccCccccc-----
Q 019022 92 RILGYTGIAYSSPTLASMIGNLTPGFTF-ILAII-FRMENLALSSLSTWAKIIGTLVSVSGAMLVVLYKGPTIMS----- 164 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~~~~pi~~~-i~a~~-~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~----- 164 (347)
+.+..-.++..+.+.+..+-++.-+.+- ..+++ +++++.+. -..++...+|++++++|..+..+-+.+....
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~-~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~ 147 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQV-PSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSE 147 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccc-cchhHHHHHHHHHHHHHHHheeeecCCCCCcccccc
Confidence 9999999999999999999887554444 33333 33332211 1227788999999999988877533332110
Q ss_pred ---CCCCC-cccCCC----CCCC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019022 165 ---TASIP-AQSLHW----TPQS------TRSRWVIGGLLLLISNLLISVWYIIQTQTMKL 211 (347)
Q Consensus 165 ---~~~~~-~~~~~~----~~~~------~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~ 211 (347)
.+..+ .+..++ .+.+ .......|..+++.+++.|+...+=.....++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 148 ETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred ccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 00000 000000 0011 11246789999999999998877666555444
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.045 Score=43.88 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHHhhhhhhh-ccCCCCCCCCchhHHHHHHHHHHH
Q 019022 10 GALFTAMVAAECTIVGENIIFKLATSKGM-SYFVFVFYSYAATTLVLLLLFPFIF-RSNTASLPLFKFPVISRICFLSLV 87 (347)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~k~~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 87 (347)
....+..+.+.++-.....++-... +.. +|..-.+.-+..++.++..+ .... ++ .. ....++..++.++-|++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l-~l~~~~~--~~-~a~~~~~pwW~~~GG~l 78 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLIL-LLIKQGH--PG-LAAVASAPWWAWIGGLL 78 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHH-HHHhcCC--Cc-hhhccCCchHHHHccch
Confidence 3445556666666666666665553 344 59999999999999988888 6653 22 22 22224445678888888
Q ss_pred HHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 88 GSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 88 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
++.+-+.-.......+++....+.-..-+...++--.|.--.. .+++++..++.|+++.++|+.++
T Consensus 79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~-~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGV-PKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCC-CcCCCCHHHHHHHHHHHHHHHHh
Confidence 8888887788888888888877766666655555554432222 33467999999999999995443
No 94
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.35 E-value=0.015 Score=44.32 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 019022 194 SNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFITVVHTFG 273 (347)
Q Consensus 194 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~ 273 (347)
-+++|+..+.+.|+..+..++...-. +..-. ... ... .|-..+ .+.....+...|++.
T Consensus 4 Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~-~~~----Ll~-------------n~~y~i--pf~lNq~GSv~f~~~ 61 (113)
T PF10639_consen 4 VGILWGCTNPFIKRGSSGLEKVKASL--QLLQE-IKF----LLL-------------NPKYII--PFLLNQSGSVLFFLL 61 (113)
T ss_pred ehHHhcCchHHHHHHHhhcCCccchH--HHHHH-HHH----HHH-------------hHHHHH--HHHHHHHHHHHHHHH
Confidence 46789999999999887655111111 11111 111 000 111111 222344677888899
Q ss_pred hccCCceeehhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhh
Q 019022 274 LRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYT 322 (347)
Q Consensus 274 l~~~~~~~~s~~-~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l 322 (347)
+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 999999999988 5899999999998877777888999999999999765
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.33 E-value=0.01 Score=53.87 Aligned_cols=139 Identities=13% Similarity=0.174 Sum_probs=109.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH---hCCCChhHHHHHHHHHHHHHHH-hhhhhhhccCCC---CCCCCchhHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLAT---SKGMSYFVFVFYSYAATTLVLL-LLFPFIFRSNTA---SLPLFKFPVISRI 81 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~---~~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~~~~~---~~~~~~~~~~~~~ 81 (347)
+..|......+.+..+...++.|..+ ++.++++....+-.-.+...++ |+ ......+.. .....+.. ....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~-~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPF-LDYVEGNKFVGFLTAPWFVT-FLIL 238 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcch-Hhhhcccceeeeeccccchh-hHHH
Confidence 56788999999999999999999998 3359999988888888888888 77 554322111 10122223 3334
Q ss_pred HHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 82 CFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 82 ~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
.+..++....|...|..+..++|-.-++....--+.+...++++++|++ +..+..|.++++.|+.+-.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pv------t~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPV------TFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCC------chhhHHHHHHHHHHHHHHH
Confidence 4444777888999999999999999999999999999999999999988 6679999999999998754
No 96
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.07 E-value=0.016 Score=42.89 Aligned_cols=54 Identities=13% Similarity=-0.014 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhccChhhHHH-HhhhhHHHHHHHHHHhhhccccccccCcceeeehhhh
Q 019022 87 VGSFFRILGYTGIAYSSPTLASM-IGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLV 146 (347)
Q Consensus 87 ~~~~~~~~~~~al~~~~~~~~~~-l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l 146 (347)
+...+..++..++++.+.+.+-. ...+..+.+.+.+.+++||++ +..|+.|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~------s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL------SLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHhheee
Confidence 44788889999999999999955 567999999999999999999 6668888765
No 97
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.57 E-value=0.066 Score=49.04 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=103.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHHHHhhhhhhh---ccCCCCCCCCchhHHHH
Q 019022 7 YKNGALFTAMVAAECTIVGENIIFKLATSKG---MSYFVFVFYSYAATTLVLLLLFPFIF---RSNTASLPLFKFPVISR 80 (347)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~---~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 80 (347)
.+...|-++.++.++++|...++.|.-.+++ ++--.+-.+--++..++++|. .+.. +. ++..-.+..+.-.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~-l~iL~~~~~--e~F~lP~~~q~~~ 319 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPP-LIILDFFGE--ERFELPSSTQFSL 319 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHH-HHHHHHhcc--CcccCCCCceeEe
Confidence 3457899999999999999999999886332 555556666666777777766 4332 33 3322223345556
Q ss_pred HHHHHHHH-HHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 81 ICFLSLVG-SFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 81 ~~~~g~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+++.++++ ++..++|..|.-.+++-.+++-..++....++.=.++.+.++ ++..++|....++|-+++.
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn 389 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHP------SALYIIGSIPIFVGFVIVN 389 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHhhee
Confidence 78888888 999999999999999999988777655555555555545555 8889999999999988876
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.71 E-value=0.17 Score=43.76 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhh
Q 019022 81 ICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAML 153 (347)
Q Consensus 81 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 153 (347)
.+...++.+....+....++|.++..-+....+.++++.+++.++++|++ +..++.|+.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~l------s~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKI------SSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHeeeEe
Confidence 44444555777788999999999999999999999999999999999998 66699999999888653
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.026 Score=50.57 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=89.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHH
Q 019022 181 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAF 260 (347)
Q Consensus 181 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ 260 (347)
..++..|..+++.|.++.+....+.|+..+|.. . .....+ ...... - .+ ..-+.|.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~------------------~~~ra~-~gg~~y-l-~~--~~Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A------------------SGLRAG-EGGYGY-L-KE--PLWWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h------------------hccccc-CCCcch-h-hh--HHHHHHH
Confidence 455667999999999999999998888877754 0 001111 111110 0 11 1225566
Q ss_pred HHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 261 FGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
+..+++-..-+.+....+++.++++..++.+..++++..+++|+++....+|+++.++|..+...
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 66677788888888889999999999999999999999999999999999999999999655443
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.95 E-value=0.065 Score=45.90 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 75 FPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 75 ~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
+..++.+.+.++++++++.+.+.-+.+-+|-.-+++..+--+|+.+++.++++.++ +.+||+|..+.+.|...=
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npl------s~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPL------SGRQWLGTVLVFSALTAD 311 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcC------cHHHHHHHHHHHHHhhhH
Confidence 34577889999999999999999999999999999999999999999999999999 556999999999987664
Q ss_pred h
Q 019022 155 V 155 (347)
Q Consensus 155 ~ 155 (347)
.
T Consensus 312 ~ 312 (337)
T KOG1580|consen 312 V 312 (337)
T ss_pred h
Confidence 4
No 101
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.92 E-value=0.56 Score=42.83 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhc-cccc-ccccccCchhHHHHHHHH
Q 019022 182 SRWVIGGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVG-ESNL-SAWRLKPDIELASIVYSA 259 (347)
Q Consensus 182 ~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~ll~~g 259 (347)
.+...|.++..+++++.+.+++=.||. |+-+ =+++=..+.+++-++.-...... -++. +.....+...+......|
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 445789999999999999999988876 4433 33333334444444332222222 2221 112222334555556667
Q ss_pred HHHHHHHHHHHHHHhccCCceee-hhhhhHHHHHHHHHHHHHhcC-------ccchhhhhhHHHHHHhhhhhhcc
Q 019022 260 FFGLSFITVVHTFGLRMKGPVYT-AIFKPLSIAIAAITSFIFLSE-------ALHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~i~~~~~~ge-------~~~~~~~iG~~li~~g~~l~~~~ 326 (347)
++-. ++-..|-.++|+++.+.. ++..-+..+++.++--++.|+ +-....++|.++.+.|+.+.-+.
T Consensus 81 ~lWG-IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 VLWG-IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HHHh-cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 7554 677888889999987765 455555666666665555442 22346789999999998886653
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.09 E-value=0.05 Score=45.29 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 265 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
.+...|..++++++|+.++.+..-.-.+..+++++++|+++....++..++.+.|+++..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 467889999999999999999999999999999999999999999999999999988876543
No 103
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.91 E-value=2.7 Score=37.76 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=104.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhhhhhhhccCCCC--CCCCchhHHHHHHHH
Q 019022 8 KNGALFTAMVAAECTIVGENIIFKLATSK-GMSYFVFVFYSYAATTLVLLLLFPFIFRSNTAS--LPLFKFPVISRICFL 84 (347)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~k~~~~~-~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (347)
+...|+.++.....+=|.....=+..+.+ .+++..+.+.-.+..++.-... .......++. .-...++.++.+++.
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 55667777777777777777766666533 5888888887777776665444 2221110111 012345678889999
Q ss_pred HHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 85 SLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 85 g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
+.+++.++.+.|+-++.-++-.-+.+.-+=-++..+++.+.++.++ +..||.|+.+.+.|..+=.
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~------s~~q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPL------SSEQWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCcc------chhhccCeeeehHHHHHHH
Confidence 9999999999999998888877788888889999999999999999 5569999999998887644
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=92.87 E-value=0.22 Score=43.94 Aligned_cols=129 Identities=9% Similarity=-0.004 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHH
Q 019022 187 GGLLLLISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLSFI 266 (347)
Q Consensus 187 G~~l~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~ 266 (347)
|.+.++.|+++++-..+=.|+.... |++.+..+.+....+..+....+.+.+.. + + + .++|-.--+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f-~---p-----~-amlgG~lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFPPF-Y---P-----W-AMLGGALWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCCcc-e---e-----H-HHhhhhhhhcC
Confidence 4567788889999888877765422 57666666666655555555554433211 1 1 1 11111111223
Q ss_pred HHHHHHHhccCCceeeh-hhhhHHHHHHHHHHHH-HhcCc---c--chhhhhhHHHHHHhhhhhhccC
Q 019022 267 TVVHTFGLRMKGPVYTA-IFKPLSIAIAAITSFI-FLSEA---L--HLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 267 ~~~~~~~l~~~~~~~~s-~~~~l~pv~a~i~~~~-~~ge~---~--~~~~~iG~~li~~g~~l~~~~~ 327 (347)
..+-.-.+++++-...- +......+.+...+.+ ++|+. + ....++|+++++.|..+...-|
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 33333344444443332 2233455666666654 45543 3 3578999999999977765433
No 105
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=90.55 E-value=1.1 Score=38.36 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCC---CCCCchhHHHHHHHHHHH
Q 019022 12 LFTAMVAAECTIVGENIIFKLAT-SKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTAS---LPLFKFPVISRICFLSLV 87 (347)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~k~~~-~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~ 87 (347)
|+++|....+.-+......|.-. -.+..-++..++..+.+..+++.+ .+.. +++.. ....+....-..++.|++
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~-s~~~-edws~~n~annl~~d~l~am~ISgl~ 233 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSF-SFLF-EDWSPGNLANNLSVDSLMAMFISGLC 233 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHH-HHHh-ccCCcchhhcCCChHHHHHHHHHHHH
Confidence 44455555555555555555553 135677888999999999998888 6664 21111 122334445578888888
Q ss_pred HHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 88 GSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 88 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
.++-.++.-+.++-++....+++-++.-.-.++.+.++++|+. +..++..+++++....+-.
T Consensus 234 svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~------nf~si~sillGflsg~iYa 295 (309)
T COG5070 234 SVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPV------NFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCch------hHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999988 5568888888877665544
No 106
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=8.5 Score=34.88 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhhCC--chHHHHHHHHHHHHHHHHHHHHhcc--cccccccccCchhHHH--HHHHHHHHHHHHHHHHHH
Q 019022 199 SVWYIIQTQTMKLYP--AEFVVTLLYCLFATIISAPICFVGE--SNLSAWRLKPDIELAS--IVYSAFFGLSFITVVHTF 272 (347)
Q Consensus 199 a~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--ll~~g~~~~~~~~~~~~~ 272 (347)
-+-.+..|.....++ ........+.+.+.+.....-...- .+..++. ...-|.- +++.+ ....=.+
T Consensus 25 ~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~--~~kk~~P~~~lf~~------~i~t~~~ 96 (314)
T KOG1444|consen 25 ILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLR--TAKKWFPVSLLFVG------MLFTGSK 96 (314)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChH--HHHHHccHHHHHHH------HHHHccc
Confidence 444567777776665 3334555777777766665544322 1222221 1222222 22222 2223346
Q ss_pred HhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 273 GLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 273 ~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
++++.+.....++....|++..+....++|-+++...+.....+++|.....
T Consensus 97 slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 97 SLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred cccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999999999999998866643
No 107
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.15 E-value=0.76 Score=40.68 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 262 GLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
|-..+..+.+.++...+++..-++.-...++.-+++.-+++.+++..||+|...+.+|+..+-.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 6667788888899999999999999999999999999999999999999999999999777543
No 108
>PRK02237 hypothetical protein; Provisional
Probab=83.27 E-value=6.7 Score=29.50 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 283 AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 283 s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
+...-...+.+.++++.+-|++|+...++|..+.+.|+.+.....
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 455666778889999999999999999999999999987765543
No 109
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=81.30 E-value=55 Score=32.43 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHHHHHH
Q 019022 284 IFKPLSIAIAAITSFIF 300 (347)
Q Consensus 284 ~~~~l~pv~a~i~~~~~ 300 (347)
......|+-+.++|.+.
T Consensus 351 ~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555556666553
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.03 E-value=3.6 Score=30.83 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCc
Q 019022 283 AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 328 (347)
Q Consensus 283 s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~ 328 (347)
+...-...+.+.++++.+-|++|+...++|..+.+.|+.+.....|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 4455566788899999999999999999999999999887766543
No 111
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=78.20 E-value=4.3 Score=30.26 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCceeehhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 266 ITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 266 ~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
+..+|+..+.+.+-+.+..+ +.+.-.++.+.|..+-.|......++|..+++.|+++..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 55677778888887777655 456778889999885555567789999999999988753
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.91 E-value=3.6 Score=30.74 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHHHHhcCccchhhhhhHHHHHHhhhhhh
Q 019022 294 AITSFIFLSEALHLGSVIGGVITCVGFYTVL 324 (347)
Q Consensus 294 ~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~ 324 (347)
..++.+++||++++.+..|..+++++++.+.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 4567788999999999999999999877654
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.70 E-value=15 Score=32.75 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHHhhhhhhhccCCC-C--CCCC-chhHHHHHHH
Q 019022 9 NGALFTAMVAAECTIVGENIIFKLATSKG-MSYFVFVFYSYAATTLVLLLLFPFIFRSNTA-S--LPLF-KFPVISRICF 83 (347)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~k~~~~~~-~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~ 83 (347)
...|+++-+++.+.-+.+.+..|..+... -.-+.++.+..+.+.++++|. ..+... .. . .++. ..+-|..+.+
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpl-l~lnge-~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPL-LILNGE-FQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHH-HHHcch-HHHHcCcccchHHHHHHHHHH
Confidence 45788899999999999999999875322 234567788888899999988 655311 01 1 1222 3344555667
Q ss_pred HHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhh
Q 019022 84 LSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 156 (347)
Q Consensus 84 ~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 156 (347)
.|++|+..++-..+=++.++|-.--+=..--...=.+++..++.|.. +...|.+..+.+.|...-..
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~k------s~lwwtsn~~vLvgs~~YT~ 327 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETK------SGLWWTSNIVVLVGSLAYTL 327 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHh------hhheeeeeEEEEehhHHHHH
Confidence 77777555555556666676653332222233344567788899977 66789999999999887664
No 114
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=67.12 E-value=1.1 Score=39.20 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHH
Q 019022 186 IGGLLLLISNLLISVWYIIQTQTMKL-YPAEFVVTLLYCLFATIISAPICFVGESNLSAWRLKPDIELASIVYSAFFGLS 264 (347)
Q Consensus 186 ~G~~l~l~a~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~ 264 (347)
+|-.+-+++ ......+....++ .+.|...++.....-+++-.++..+..+.. ...|-..+.+++ ..+
T Consensus 22 LGQiLSL~~----t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~-------~~~~~hYilla~-~DV 89 (336)
T KOG2766|consen 22 LGQILSLLI----TSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYI-------KAKWRHYILLAF-VDV 89 (336)
T ss_pred HHHHHHHHH----HcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHH-------HHHHHHhhheeE-Eee
Confidence 344444443 3333344444444 334555555555555555555555443211 112333334444 344
Q ss_pred HHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhcc
Q 019022 265 FITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 326 (347)
=+..+..++.++.+.+.+..+.....+...+++|++++.+..++++.|.++-+.|+.++...
T Consensus 90 EaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 90 EANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred cccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 55666778888999999999999999999999999999999999999999999998876644
No 115
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.13 E-value=15 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred HHHHHHHhcCccchhhhhhHHHHHHhhhhhhc
Q 019022 294 AITSFIFLSEALHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 294 ~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~ 325 (347)
..++.+.++|++.+-++.|..++++|++...+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45688899999999999999999999887765
No 116
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=63.59 E-value=1.2e+02 Score=27.70 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 257 YSAFFGLSFITVVHTFGLRMKGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 257 ~~g~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
-.|+ +++.=..+-++++++++.+.-++.-...+++..+++.++-=|.+++....=..+|-+|+++..++.
T Consensus 89 Ptal-ata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 89 PTAL-ATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred hhhh-hhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 3444 677778889999999999999999999999999999998889999988888888888888877654
No 117
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=62.82 E-value=2.4 Score=37.46 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 019022 181 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP 213 (347)
Q Consensus 181 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~ 213 (347)
++....|.++.+++.+. |+...++-.+++++.
T Consensus 102 GQ~LF~Gi~~l~l~~lL-aL~vW~Ym~lLr~~G 133 (381)
T PF05297_consen 102 GQTLFVGIVILFLCCLL-ALGVWFYMWLLRELG 133 (381)
T ss_dssp ---------------------------------
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 44555676655554332 333333344556665
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.78 E-value=27 Score=26.07 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 283 AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 283 s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
+...-...+.+.++.+.+=|.+|+.+.++|..+-++|..++....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 345556678889999999999999999999999999977766554
No 119
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=61.48 E-value=57 Score=26.56 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhC-----CchHHHHHHHHHHHHHHHHHHH
Q 019022 181 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLY-----PAEFVVTLLYCLFATIISAPIC 234 (347)
Q Consensus 181 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 234 (347)
+.+.......++.+++.|++..++.....+|. |.|..-..+.++.+.+....+.
T Consensus 127 ~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFm 185 (193)
T COG4657 127 GHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFM 185 (193)
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHc
Confidence 34456678888999999999998888777664 2344455555555555555443
No 120
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=57.97 E-value=1.9e+02 Score=28.09 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHH-hcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 284 IFKPLSIAIAAITSFIF-LSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 284 ~~~~l~pv~a~i~~~~~-~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
.....-|+++.++..+. ....+ .....|.+++..|..++.+.+++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666555433 33322 34557888888887666554443
No 121
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=55.02 E-value=1.3e+02 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhccChhh
Q 019022 74 KFPVISRICFLSLVGSFFRILGYTGIAYSSPTL 106 (347)
Q Consensus 74 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~ 106 (347)
+++.+++.++.++...+.+...+......++..
T Consensus 142 ~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~i 174 (206)
T PF06570_consen 142 KRPSWWKYILISVLAMVLWIVIFVLTSFLPPVI 174 (206)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 344555555666655555555555555566553
No 122
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=53.38 E-value=67 Score=28.71 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCC---CCCchhHHHHHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhh
Q 019022 37 GMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASL---PLFKFPVISRICFLSLVGSFFRILGYTGIAYSSPTLASMIGNL 113 (347)
Q Consensus 37 ~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~ 113 (347)
.-+..+++++.+.++.++++.. +.....-...+ ...+.+..-+.++.+..+..++.+...-++.-++..++.+...
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~-mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAP-MVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred CCCcceEEEeeecccHHHHHHH-HHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHh
Confidence 4566788888888888888776 55421100110 1234445556677777776666555555666677777777777
Q ss_pred hHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 114 TPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 114 ~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
---.+.+++++++..++ |-.-.++.++.+.|+.+=.
T Consensus 296 RKavTi~lSfllFsKPf------T~qy~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPF------TEQYVWSGLLVVLGIYLNM 331 (367)
T ss_pred HhHHHHHHHHHHHcCch------HHHHhhhhHHHHHHHHhhc
Confidence 78889999999999988 5558899999999988866
No 123
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=52.19 E-value=40 Score=25.32 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChh------HHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHH
Q 019022 13 FTAMVAAECTIVGENIIFKLATSKGMSYF------VFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSL 86 (347)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~k~~~~~~~~p~------~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (347)
...++....+||...++.|.. +.+.+.. ...+.|-... ...+++ +.+. -.
T Consensus 5 ~~~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~t-------------------l~l~w~---Y~iP-Fl 60 (125)
T KOG4831|consen 5 MDKLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMKT-------------------LFLNWE---YLIP-FL 60 (125)
T ss_pred HHHHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHHH-------------------HHHhHH---HHHH-HH
Confidence 445778889999999999988 3443322 1112111111 011111 1221 22
Q ss_pred HHHHHHHHHHhhhhccChhhHHHHhh-hhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 87 VGSFFRILGYTGIAYSSPTLASMIGN-LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 87 ~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
++-.+..+||.-+...+.+.+.-+.+ +.-.|+.+.+..+ +|+.. ..+.+.|..+.++|+.+.+
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~-----g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQ-----GGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccc-----cceeehhhhHHhhhhhhee
Confidence 33334557778899999999887755 6777888888875 55553 5568899999999887653
No 124
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=49.97 E-value=8 Score=30.71 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=20.2
Q ss_pred HhccCCceeehhhhhHHHHHHHHHHHHH
Q 019022 273 GLRMKGPVYTAIFKPLSIAIAAITSFIF 300 (347)
Q Consensus 273 ~l~~~~~~~~s~~~~l~pv~a~i~~~~~ 300 (347)
++..-+...++.+.|+.|+++.+++.+.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788888888888777665
No 125
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=48.74 E-value=49 Score=21.49 Aligned_cols=45 Identities=16% Similarity=0.429 Sum_probs=33.9
Q ss_pred eeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019022 140 KIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKL 211 (347)
Q Consensus 140 ~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~ 211 (347)
..+|.++.+.|++++. ..|| |....+++-...+......|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~-lPGp--------------------------G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLP-LPGP--------------------------GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhc-CCCC--------------------------cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5778888899988877 3343 6777777777788888888877654
No 126
>COG1971 Predicted membrane protein [Function unknown]
Probab=44.61 E-value=30 Score=29.07 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHH-HHhhhhhhc
Q 019022 283 AIFKPLSIAIAAITSFIFLSEALHLGSVIGGVIT-CVGFYTVLW 325 (347)
Q Consensus 283 s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li-~~g~~l~~~ 325 (347)
+.+..+.|+++...+.++-+-.-.+..|+|.++. +.|+.....
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888766444566787776655 577666543
No 127
>PRK02237 hypothetical protein; Provisional
Probab=44.24 E-value=93 Score=23.52 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 113 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 113 ~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
...+...+..+.+-++ ||+..+++|..++++|+.++.
T Consensus 68 vyI~~Sl~W~w~vdg~------~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 68 VYVAGSLLWLWVVDGV------RPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHHHHHHHhcCc------CCChhHHHhHHHHHHhHHHhe
Confidence 3444444555555444 559999999999999998887
No 128
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=44.24 E-value=14 Score=33.41 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhcc-C--C-CC------CCCCchhHHHHHHHHH
Q 019022 16 MVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRS-N--T-AS------LPLFKFPVISRICFLS 85 (347)
Q Consensus 16 ~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~--~-~~------~~~~~~~~~~~~~~~g 85 (347)
|+++++|||+.....|++. +.-...+.+.+-+.++.++...++++.... + + +. ..+.++......+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~-r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAE-RRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHH-hcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 4677899999999999994 333333446777777766655552333211 0 0 01 0122334444456666
Q ss_pred HHHHHHHHHHHhhhhccChhhHHHHhhh-hHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhh
Q 019022 86 LVGSFFRILGYTGIAYSSPTLASMIGNL-TPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAML 153 (347)
Q Consensus 86 ~~~~~~~~~~~~al~~~~~~~~~~l~~~-~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 153 (347)
++...++++..+|+.+.+.+.+-.+... .-+.-..+-+ ++..|.+. ...-..|+.+.++.+++
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~----a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINR----AEILFPGVACFLIAIIL 143 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCC----ceEEEccHHHHHHHHHH
Confidence 6668899999999999998888766543 3333333333 44455411 11233455555544443
No 129
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=41.22 E-value=11 Score=23.22 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=7.4
Q ss_pred chhhhhhHHHHHHhhh
Q 019022 306 HLGSVIGGVITCVGFY 321 (347)
Q Consensus 306 ~~~~~iG~~li~~g~~ 321 (347)
++.+++=.++|+.|++
T Consensus 3 ~wlt~iFsvvIil~If 18 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIF 18 (49)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444555543
No 130
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=40.58 E-value=2.3e+02 Score=24.02 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=25.6
Q ss_pred HHHHHHHhcCccchhhhhhHHHHH--HhhhhhhccCcccccCC
Q 019022 294 AITSFIFLSEALHLGSVIGGVITC--VGFYTVLWGKANDEAGK 334 (347)
Q Consensus 294 ~i~~~~~~ge~~~~~~~iG~~li~--~g~~l~~~~~~~~~~~~ 334 (347)
-.+|..++++..=+...+|..+.+ .|.....++++++.+++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~~~~~~~ 175 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRERARVKRQ 175 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccc
Confidence 445777778877788888887764 46555555444333333
No 131
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=37.25 E-value=13 Score=33.47 Aligned_cols=129 Identities=7% Similarity=-0.014 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHhcccc-c----cc---ccccCchhHH--HHHHHHHH
Q 019022 192 LISNLLISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAPICFVGESN-L----SA---WRLKPDIELA--SIVYSAFF 261 (347)
Q Consensus 192 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~---~~~~~~~~~~--~ll~~g~~ 261 (347)
+++.+||+-+-..+|...++.. ..+..++=+.++.+....+..++-+. . +. +......+|. ...+.|-+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 3566788888888887766543 22233443444444333333332111 1 11 1100111222 22344444
Q ss_pred HHHHHHHHHHHHhccCCceeehhhhh-HHHHHHHHHHHHHhcCccc--hhhhhhHHHHHHhhhh
Q 019022 262 GLSFITVVHTFGLRMKGPVYTAIFKP-LSIAIAAITSFIFLSEALH--LGSVIGGVITCVGFYT 322 (347)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~s~~~~-l~pv~a~i~~~~~~ge~~~--~~~~iG~~li~~g~~l 322 (347)
.--++.++..+++...+.+.+-++.. +.-++++++-|+ +..+.+ .....|..++++++++
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHH
Confidence 55678889888988888777655442 222334455554 344443 2455677777666655
No 132
>PRK11469 hypothetical protein; Provisional
Probab=36.31 E-value=34 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=29.8
Q ss_pred ehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHH-Hhhhhhh
Q 019022 282 TAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITC-VGFYTVL 324 (347)
Q Consensus 282 ~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~-~g~~l~~ 324 (347)
.+.++.+.|..+...+..+-+-.....+|+|..+.+ .|.....
T Consensus 43 ~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 43 FGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668888888888887665555566788776554 5766655
No 133
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=26 Score=26.18 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=19.6
Q ss_pred cCcceeeehhhhhhhhhhhhhh
Q 019022 135 LSTWAKIIGTLVSVSGAMLVVL 156 (347)
Q Consensus 135 ~~~~~~~~gi~l~~~Gv~li~~ 156 (347)
||++.++.|..++++|+.++.+
T Consensus 83 ~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 83 RPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred CCcHHHhhhHHHHHhceeeeEe
Confidence 6699999999999999988873
No 134
>PF15102 TMEM154: TMEM154 protein family
Probab=34.67 E-value=36 Score=27.17 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=9.5
Q ss_pred hHHHHHHhhhhhhccCcccc
Q 019022 312 GGVITCVGFYTVLWGKANDE 331 (347)
Q Consensus 312 G~~li~~g~~l~~~~~~~~~ 331 (347)
+++|++..++++.+.|||+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 33444455555554444433
No 135
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.24 E-value=26 Score=26.31 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 113 LTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 113 ~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
...+...+-.+.+-|+ ||++.+++|..++++|+.++.
T Consensus 66 vfI~~Sl~W~w~vdg~------~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGV------RPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred hHHHHHHHHHhhhcCc------CCChHHHHhHHHHHHhHHheE
Confidence 4445555555555455 458999999999999999987
No 136
>COG4854 Predicted membrane protein [Function unknown]
Probab=33.86 E-value=1.1e+02 Score=23.13 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=38.9
Q ss_pred cCcceeeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 019022 135 LSTWAKIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLY 212 (347)
Q Consensus 135 ~~~~~~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~ 212 (347)
.+...|.+.+..++.|.+++.+ +.| .....+..+-+..+..-.+|..++..+.++.
T Consensus 69 Sr~TiqV~~is~Al~gavl~a~-knP---------------------~~~~a~~al~~A~ca~ivLy~~fY~YYsrr~ 124 (126)
T COG4854 69 SRRTIQVFSISAALGGAVLLAL-KNP---------------------LHTNAAFALEFAVCAVIVLYLAFYMYYSRRA 124 (126)
T ss_pred hheeEEEEEehHHHHHHHHHHh-cCc---------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455688999999999999883 322 2223477777777777788888887776654
No 137
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=33.60 E-value=40 Score=30.17 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHHHHHHhcc-CCceeehhhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCccccc
Q 019022 267 TVVHTFGLRM-KGPVYTAIFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKANDEA 332 (347)
Q Consensus 267 ~~~~~~~l~~-~~~~~~s~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~~ 332 (347)
..+-+++++. ++....-++..-.++..++.++++.|.+.+..|+....++-+|+++....+.++-+
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 4455667654 67778888999999999999999999999999999999999999998776555443
No 138
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=32.63 E-value=4.1e+02 Score=24.69 Aligned_cols=20 Identities=15% Similarity=-0.039 Sum_probs=11.3
Q ss_pred chhhhhhHHHHHHhhhhhhc
Q 019022 306 HLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 306 ~~~~~iG~~li~~g~~l~~~ 325 (347)
+....++.++.+.+.++..+
T Consensus 369 ~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 369 PGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666555433
No 139
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=32.20 E-value=24 Score=27.76 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCceeehhhhhHHHHHHHHHHHHHhcCcc---chhhhhhHHHHHHh
Q 019022 277 KGPVYTAIFKPLSIAIAAITSFIFLSEAL---HLGSVIGGVITCVG 319 (347)
Q Consensus 277 ~~~~~~s~~~~l~pv~a~i~~~~~~ge~~---~~~~~iG~~li~~g 319 (347)
.+..+.+.+.|+-|+++.+.+.++. ..+ .....++.++.+..
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~~ 109 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLAL 109 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777888877776643 222 34444444444433
No 140
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.48 E-value=27 Score=27.06 Aligned_cols=8 Identities=13% Similarity=-0.097 Sum_probs=3.3
Q ss_pred hHHHHHHh
Q 019022 312 GGVITCVG 319 (347)
Q Consensus 312 G~~li~~g 319 (347)
|++++++.
T Consensus 76 GvIg~Ill 83 (122)
T PF01102_consen 76 GVIGIILL 83 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 141
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.88 E-value=3.2e+02 Score=22.95 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 019022 14 TAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVGSFFRI 93 (347)
Q Consensus 14 ~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 93 (347)
+..-+.+.+-|.+..+.+.+ ...+-......-.+.++....-+ -+..|.. .. + -.|..+++.++.......-+.
T Consensus 103 l~lg~~aLlsgitaff~~nA--~~~GlItlll~a~vgGfamy~my-~y~yr~~-ad-~-sqr~~~~K~~lv~~~sm~lWi 176 (226)
T COG4858 103 LFLGAMALLSGITAFFQKNA--QVYGLITLLLTAVVGGFAMYIMY-YYAYRMR-AD-N-SQRPGTWKYLLVAVLSMLLWI 176 (226)
T ss_pred HHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHhhhHHHHHHH-HHHHHhh-cc-c-ccCCchHHHHHHHHHHHHHHH
Confidence 33444555666677776665 35555555555555555544444 3332210 11 1 122234555555555555555
Q ss_pred HHHhhhhccChhhHHHHhhhhHHHHHHHH------HHhhhcccccc
Q 019022 94 LGYTGIAYSSPTLASMIGNLTPGFTFILA------IIFRMENLALS 133 (347)
Q Consensus 94 ~~~~al~~~~~~~~~~l~~~~pi~~~i~a------~~~~~e~~~~~ 133 (347)
+.+.+-.+.+++.--. +.|+...+++ ++.+|.|.+.+
T Consensus 177 ~v~i~t~~lPtslN~~---L~pi~l~IiGav~lalRfylkkk~NIq 219 (226)
T COG4858 177 AVMIATVFLPTSLNPQ---LPPIALTIIGAVILALRFYLKKKKNIQ 219 (226)
T ss_pred HHHHHHhhCCCcCCcC---CchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6667777777665433 3333333333 45556666444
No 142
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=30.33 E-value=25 Score=28.56 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=10.8
Q ss_pred eeehhhhhHHHHHHHHHHHH
Q 019022 280 VYTAIFKPLSIAIAAITSFI 299 (347)
Q Consensus 280 ~~~s~~~~l~pv~a~i~~~~ 299 (347)
.+.+.+.|+-|+++.+.+..
T Consensus 75 lkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666555544
No 143
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=29.10 E-value=2.8e+02 Score=27.05 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=18.0
Q ss_pred cchhhhhhHHHHHHhhhhhhcc
Q 019022 305 LHLGSVIGGVITCVGFYTVLWG 326 (347)
Q Consensus 305 ~~~~~~iG~~li~~g~~l~~~~ 326 (347)
++..|++.+.++++|+++..+.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~ 275 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILA 275 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999997776543
No 144
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=28.46 E-value=4.3e+02 Score=23.61 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCC---CCchhHHHHHHHHHHHHHHH
Q 019022 17 VAAECTIVGENIIFKLATSK--GMSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLP---LFKFPVISRICFLSLVGSFF 91 (347)
Q Consensus 17 l~~~~~~~~~~~~~k~~~~~--~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~ 91 (347)
+...+++++.+.+.... ++ ++.|.....+-.+..+.+.... ...+|.||+-.. ..+.++|..-.+++..-
T Consensus 100 l~ll~lyAlinAl~~l~-dGGR~v~~~~ai~yt~~s~~~Ca~~~-~~~~r~nrr~~s~lIald~kqW~Mst~lS~al--- 174 (314)
T COG3965 100 LALLCLYALINALGSLL-DGGREVEPGHAIAYTLVSVTGCAAIA-WKLRRLNRRLKSPLIALDTKQWLMSTCLSAAL--- 174 (314)
T ss_pred HHHHHHHHHHHHHHHHh-cCCccccccHHHHHHHHHHHHHHHHH-HHHHhhhccCCCchhhhHHHHHHHHHHHHHHH---
Confidence 44556778877777766 44 3777777777666666655554 333232211111 22345555433333322
Q ss_pred HHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccc
Q 019022 92 RILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENL 130 (347)
Q Consensus 92 ~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~ 130 (347)
...+..|.....-..+-...+.-|...++.+.++.+-++
T Consensus 175 ~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPl 213 (314)
T COG3965 175 FVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPL 213 (314)
T ss_pred HHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccH
Confidence 222223333344445566778899999999888755433
No 145
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=27.59 E-value=5.5e+02 Score=24.53 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhhccC------------------------------hhhHHH-HhhhhHHHHH-HHHHHh
Q 019022 79 SRICFLSLVG-SFFRILGYTGIAYSS------------------------------PTLASM-IGNLTPGFTF-ILAIIF 125 (347)
Q Consensus 79 ~~~~~~g~~~-~~~~~~~~~al~~~~------------------------------~~~~~~-l~~~~pi~~~-i~a~~~ 125 (347)
..+++.|+|+ ..+-.....|.+-++ .+.+.+ +....|-+.. +.+.++
T Consensus 3 ~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~f 82 (402)
T PF02487_consen 3 VAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFF 82 (402)
T ss_pred hHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhh
Confidence 4577888888 777777777776665 222223 3445666655 344444
Q ss_pred hhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 126 RMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 126 ~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
.+ |+ ++..|-+...++...|.+++.
T Consensus 83 i~-~v----~y~~Ri~~~~~l~~~g~l~va 107 (402)
T PF02487_consen 83 IH-RV----PYWIRILICVALSAAGMLLVA 107 (402)
T ss_pred hh-hc----cchHHHHHHHHHHHHHHhhee
Confidence 33 44 335667888888888887777
No 146
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=27.31 E-value=2.9e+02 Score=21.19 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=48.2
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhhhhhhcc-CCCCCCCCchhHHH
Q 019022 1 METNNSYKNGALFTAMVAAECTIVGENIIFKLATSKGMSYFVFVFYSYAATTLVLLLLFPFIFRS-NTASLPLFKFPVIS 79 (347)
Q Consensus 1 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (347)
|..++..+|..-+++++...+.-|....+..-. + |+.+- -+-++++... ++..|. +... +...++...
T Consensus 1 M~~~~~~ek~tLlLaliaGl~~n~~~s~L~~s~----V-pFSiF----PlIaLvLavy-~LyQ~Yl~~~m-~eg~P~~a~ 69 (117)
T PF07226_consen 1 MTEQNRSEKKTLLLALIAGLCGNATFSALFSSE----V-PFSIF----PLIALVLAVY-CLYQRYLNHPM-PEGTPKLAL 69 (117)
T ss_pred CCCccCCchhhHHHHHHHHHhccchhHHHHhcc----c-ccHHH----HHHHHHHHHH-HHHHHHhcCCC-CCCChHHHH
Confidence 555554555554555555555444443332222 2 22211 1223445555 554321 1122 333444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccChhhHHHHhhhhHHHHHHHHHHhhhccc
Q 019022 80 RICFLSLVGSFFRILGYTGIAYSSPTLASMIGNLTPGFTFILAIIFRMENL 130 (347)
Q Consensus 80 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~~ 130 (347)
..++.|+++.. .+.-.+|=. +-.+.-|+...++-.++...|+
T Consensus 70 acFflG~f~yS----A~vraqyPe-----iGSNFfp~il~l~L~~Wi~~kl 111 (117)
T PF07226_consen 70 ACFFLGLFGYS----AFVRAQYPE-----IGSNFFPSILCLILVFWIGYKL 111 (117)
T ss_pred HHHHHHHHHHH----HHHHHhchh-----hhhhHHHHHHHHHHHHHHHHHH
Confidence 45555554422 223333322 2345666666666556655555
No 147
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.22 E-value=29 Score=23.10 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=13.6
Q ss_pred eeehhhhhhhhhhhhh
Q 019022 140 KIIGTLVSVSGAMLVV 155 (347)
Q Consensus 140 ~~~gi~l~~~Gv~li~ 155 (347)
|++|+++.+.|++++.
T Consensus 1 kiigi~Llv~GivLl~ 16 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLY 16 (59)
T ss_pred CeeeehHHHHHHHHHH
Confidence 4788999999998887
No 148
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=26.06 E-value=85 Score=17.69 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=8.2
Q ss_pred chhhhhhHHHHHHhhh
Q 019022 306 HLGSVIGGVITCVGFY 321 (347)
Q Consensus 306 ~~~~~iG~~li~~g~~ 321 (347)
....++|.+++..+.+
T Consensus 11 ~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGL 26 (34)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667744444333
No 149
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=24.63 E-value=78 Score=27.04 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=30.0
Q ss_pred CceeehhhhhHHHHHHHHHHHHHhcCccc-hhhhhhHHH-HHHhhhhhh
Q 019022 278 GPVYTAIFKPLSIAIAAITSFIFLSEALH-LGSVIGGVI-TCVGFYTVL 324 (347)
Q Consensus 278 ~~~~~s~~~~l~pv~a~i~~~~~~ge~~~-~~~~iG~~l-i~~g~~l~~ 324 (347)
.+...+.+....|..+..++..+-+-.+. ..+|+|+++ +..|.....
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888776544434 456766655 456866653
No 150
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.64 E-value=60 Score=19.73 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=10.5
Q ss_pred hhHHHHHHhhhhhhccCc
Q 019022 311 IGGVITCVGFYTVLWGKA 328 (347)
Q Consensus 311 iG~~li~~g~~l~~~~~~ 328 (347)
+|.++++.+.+++.|.++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 355556666666655544
No 151
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.31 E-value=3.1e+02 Score=20.15 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=32.8
Q ss_pred HHHhccCCceeehhhhhHHHHHHHHHHHHH---hcCc-cchhhhhhHHHHHHhhhhhhc
Q 019022 271 TFGLRMKGPVYTAIFKPLSIAIAAITSFIF---LSEA-LHLGSVIGGVITCVGFYTVLW 325 (347)
Q Consensus 271 ~~~l~~~~~~~~s~~~~l~pv~a~i~~~~~---~ge~-~~~~~~iG~~li~~g~~l~~~ 325 (347)
..++++.+...-..+-.+..+++++++.+. .++. +-...|.|++.=+.+.-+...
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~ 80 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQ 80 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHH
Confidence 556777665566666666777777776553 3332 233457777666666555443
No 152
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=23.07 E-value=1e+02 Score=21.02 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=9.7
Q ss_pred hhhhHHHHHHhhhhhh
Q 019022 309 SVIGGVITCVGFYTVL 324 (347)
Q Consensus 309 ~~iG~~li~~g~~l~~ 324 (347)
-.++.++++.|.+++-
T Consensus 6 iLi~ICVaii~lIlY~ 21 (68)
T PF05961_consen 6 ILIIICVAIIGLILYG 21 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666677766654
No 153
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=23.04 E-value=4.9e+02 Score=22.93 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=34.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---chHHHHHHHHHHHHHHHH
Q 019022 181 RSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP---AEFVVTLLYCLFATIISA 231 (347)
Q Consensus 181 ~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 231 (347)
......|.+++......+|.=....|+..|+.+ .|..+.+..++.+...++
T Consensus 123 ~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~l 176 (243)
T KOG1623|consen 123 RRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLL 176 (243)
T ss_pred eeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHH
Confidence 335567999999999999888888888877765 344554444444444433
No 154
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=22.59 E-value=4.7e+02 Score=22.02 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019022 185 VIGGLLLLISNLLISVWYIIQTQTM 209 (347)
Q Consensus 185 ~~G~~l~l~a~~~~a~~~v~~~~~~ 209 (347)
..-..+.+++++..|+...+.|+..
T Consensus 193 L~pi~l~IiGav~lalRfylkkk~N 217 (226)
T COG4858 193 LPPIALTIIGAVILALRFYLKKKKN 217 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466788888888888887777653
No 155
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=21.93 E-value=2.7e+02 Score=22.62 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=48.6
Q ss_pred eeehhhhhhhhhhhhhhccCcccccCCCCCcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhCC--chHH
Q 019022 140 KIIGTLVSVSGAMLVVLYKGPTIMSTASIPAQSLHWTPQSTRSRWVIGGLLLLISNLLISVWYIIQTQTMKLYP--AEFV 217 (347)
Q Consensus 140 ~~~gi~l~~~Gv~li~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~~~~~~~~~--~~~~ 217 (347)
.-.+++.++.|.=+++..+-- .+..+...|..|..+.+.+-+..+....-.-.+.++.. -..+
T Consensus 91 ~slAVV~AIFGLElLmvSQvc---------------Ed~~SrrKWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFT 155 (184)
T PF15108_consen 91 GSLAVVVAIFGLELLMVSQVC---------------EDAHSRRKWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFT 155 (184)
T ss_pred HHHHHHHHHHhHHHHHHHHHH---------------hcchhhhhhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhH
Confidence 345566666776665532111 11245778889999999887766665555555555433 3567
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019022 218 VTLLYCLFATIISAPIC 234 (347)
Q Consensus 218 ~~~~~~~~~~~~~~~~~ 234 (347)
.++|.-+.+...++.-+
T Consensus 156 L~fWCeFtAsFLfFLN~ 172 (184)
T PF15108_consen 156 LMFWCEFTASFLFFLNG 172 (184)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88887777766555433
No 156
>PHA03049 IMV membrane protein; Provisional
Probab=21.72 E-value=1.1e+02 Score=20.80 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=8.7
Q ss_pred hhhHHHHHHhhhhhh
Q 019022 310 VIGGVITCVGFYTVL 324 (347)
Q Consensus 310 ~iG~~li~~g~~l~~ 324 (347)
.++.++++.|.+++-
T Consensus 7 l~iICVaIi~lIvYg 21 (68)
T PHA03049 7 LVIICVVIIGLIVYG 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666543
No 157
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.36 E-value=9.6e+02 Score=25.15 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=29.2
Q ss_pred hhhHHHHhhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhh
Q 019022 104 PTLASMIGNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLV 154 (347)
Q Consensus 104 ~~~~~~l~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li 154 (347)
.+.+.++..+.|+-.+.++.+...+|. +...+.+.+-.++|.+-+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~------~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKG------GDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcc------cchHHHHHHHHHHHHHHh
Confidence 356778888999999999998765542 122455555555555433
No 158
>PF09529 Intg_mem_TP0381: Integral membrane protein (intg_mem_TP0381); InterPro: IPR011737 This entry represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=21.13 E-value=5.2e+02 Score=22.02 Aligned_cols=58 Identities=17% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhccChhhHHHHhhh-hHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 89 SFFRILGYTGIAYSSPTLASMIGNL-TPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 89 ~~~~~~~~~al~~~~~~~~~~l~~~-~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
-.....++....+.+..+.-.+.-+ ...+...++.+..||++ .-.....++.|.....
T Consensus 52 ~i~~~~~~~~~~~~~~~e~LPLhlC~i~~~~~~l~l~~k~~~~---------~~~~~~~gi~Gai~Al 110 (225)
T PF09529_consen 52 EIILYIWYIYIGYFSLWESLPLHLCRIAMILAALALITKKKKL---------FEYFYFWGIIGAIQAL 110 (225)
T ss_pred HHHHHHHHHhcCCCchhccCCchhhhHHHHHHHHHHHcCcHHH---------HHHHHHHHHHHHHHHe
Confidence 4445555555566666665555554 33344445555555544 2334455666665544
No 159
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=21.11 E-value=9.2e+02 Score=24.85 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCC-CChhHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCchhHHHHHHHHHHHH--HHHHHHHHhhhhcc
Q 019022 26 ENIIFKLATSKG-MSYFVFVFYSYAATTLVLLLLFPFIFRSNTASLPLFKFPVISRICFLSLVG--SFFRILGYTGIAYS 102 (347)
Q Consensus 26 ~~~~~k~~~~~~-~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~al~~~ 102 (347)
...+.|++.+++ ++|..=...-...+..+...= .+. || + +.+.....+..|-+. ....+.-+.-++..
T Consensus 18 ~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l~~~g-~~l-~~--k-----~~~~~~~~L~g~G~a~ly~t~~aa~~~y~l~ 88 (745)
T PF10101_consen 18 VVFLLKYAIDAGWLGPAVRVALGAALGLALLAAG-ERL-RR--K-----GYRAFAQALAGGGIAVLYLTVFAAYHLYGLI 88 (745)
T ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHHH-HHH-HH--c-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667776544 777665444444443333222 111 22 1 123344444444333 33333333445667
Q ss_pred ChhhHHHHhhhhHHHHHHHHHHhhhc
Q 019022 103 SPTLASMIGNLTPGFTFILAIIFRME 128 (347)
Q Consensus 103 ~~~~~~~l~~~~pi~~~i~a~~~~~e 128 (347)
++..+-++........+.+|.-...|
T Consensus 89 ~~~~af~~~~~v~~~~~~la~r~~~~ 114 (745)
T PF10101_consen 89 PPPVAFALLALVTAAAVALALRYDSP 114 (745)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 88888888888888888888765444
Done!