Query 019022
Match_columns 347
No_of_seqs 138 out of 1792
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 2.1E-10 7.2E-15 90.1 7.0 72 257-328 34-106 (137)
2 3b5d_A Multidrug transporter E 98.7 3.5E-08 1.2E-12 74.7 8.0 71 257-327 34-105 (110)
3 3b5d_A Multidrug transporter E 98.2 3.3E-06 1.1E-10 63.7 7.1 67 83-155 34-102 (110)
4 2i68_A Protein EMRE; transmemb 98.2 2E-06 6.8E-11 67.3 5.5 68 83-156 34-103 (137)
5 3l1l_A Arginine/agmatine antip 64.5 83 0.0028 28.5 14.6 45 285-329 386-430 (445)
6 2l2t_A Receptor tyrosine-prote 35.0 31 0.0011 20.6 2.6 12 319-330 29-40 (44)
7 2ks1_B Epidermal growth factor 31.2 38 0.0013 20.2 2.5 8 321-328 32-39 (44)
8 1pw4_A Glycerol-3-phosphate tr 27.8 3.1E+02 0.011 24.1 21.7 36 16-53 95-132 (451)
9 2jp3_A FXYD domain-containing 18.7 25 0.00085 23.0 0.0 17 310-326 23-39 (67)
10 2knc_A Integrin alpha-IIB; tra 18.4 1.3E+02 0.0044 18.7 3.3 7 312-318 21-27 (54)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.07 E-value=2.1e-10 Score=90.07 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCc
Q 019022 257 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKA 328 (347)
Q Consensus 257 ~~g~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~ 328 (347)
.++++++++++.+|++++++.+++.+..+ ..+.|+++++++++++||++++.+++|+.+|+.|+++....++
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46677899999999999999999999998 8999999999999999999999999999999999998876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.73 E-value=3.5e-08 Score=74.69 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCceeehhh-hhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccC
Q 019022 257 YSAFFGLSFITVVHTFGLRMKGPVYTAIF-KPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGK 327 (347)
Q Consensus 257 ~~g~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~ 327 (347)
..++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+.+++++||++++.+++|..+|+.|++.....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46666888999999999999999999888 899999999999999999999999999999999998887644
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.21 E-value=3.3e-06 Score=63.75 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHHHHH-HHHHHHHHhhhhccChhhHHHH-hhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhh
Q 019022 83 FLSLVG-SFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVV 155 (347)
Q Consensus 83 ~~g~~~-~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~ 155 (347)
..+.+. ..++.++..++++.+.+.+..+ ..+.|+++.+++++++||++ +..++.|+.+.+.|+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~------s~~~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------DLPAIIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHh
Confidence 344444 8889999999999999999888 89999999999999999999 6669999999999998886
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=2e-06 Score=67.33 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=51.2
Q ss_pred HHHHHH-HHHHHHHHhhhhccChhhHHHH-hhhhHHHHHHHHHHhhhccccccccCcceeeehhhhhhhhhhhhhh
Q 019022 83 FLSLVG-SFFRILGYTGIAYSSPTLASMI-GNLTPGFTFILAIIFRMENLALSSLSTWAKIIGTLVSVSGAMLVVL 156 (347)
Q Consensus 83 ~~g~~~-~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~a~~~~~e~~~~~~~~~~~~~~gi~l~~~Gv~li~~ 156 (347)
+.+++. +.++.++..++++.+++.+..+ .++.|++++++++++++|++ +..+++|+++.+.|+.++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~l------s~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL------DLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHHhc
Confidence 344444 8899999999999999999888 89999999999999999999 66799999999999998873
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=64.47 E-value=83 Score=28.46 Aligned_cols=45 Identities=9% Similarity=-0.220 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHhhhhhhccCcc
Q 019022 285 FKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVGFYTVLWGKAN 329 (347)
Q Consensus 285 ~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~ 329 (347)
....-++++.+...+..-..-....+.|..+++.|+.++...+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555556555544332222234556778888887776554433
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.95 E-value=31 Score=20.58 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=4.8
Q ss_pred hhhhhhccCccc
Q 019022 319 GFYTVLWGKAND 330 (347)
Q Consensus 319 g~~l~~~~~~~~ 330 (347)
+.+++.++++++
T Consensus 29 ~~~~~~RRRr~~ 40 (44)
T 2l2t_A 29 TFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHhhhhhhh
Confidence 334444444333
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.19 E-value=38 Score=20.18 Aligned_cols=8 Identities=0% Similarity=-0.126 Sum_probs=3.0
Q ss_pred hhhhccCc
Q 019022 321 YTVLWGKA 328 (347)
Q Consensus 321 ~l~~~~~~ 328 (347)
+++.++++
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 33333333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=27.76 E-value=3.1e+02 Score=24.06 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHH
Q 019022 16 MVAAECTIVGENIIFKLAT--SKGMSYFVFVFYSYAATTL 53 (347)
Q Consensus 16 ~l~~~~~~~~~~~~~k~~~--~~~~~p~~~~~~r~~~~~l 53 (347)
++.+.++++......-... .+ +...+...|.+.+..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWF 132 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHH
Confidence 3344444554444443310 12 334555567665543
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=18.67 E-value=25 Score=22.98 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=10.5
Q ss_pred hhhHHHHHHhhhhhhcc
Q 019022 310 VIGGVITCVGFYTVLWG 326 (347)
Q Consensus 310 ~iG~~li~~g~~l~~~~ 326 (347)
++++++.+.|+.+...+
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45556666776666544
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.40 E-value=1.3e+02 Score=18.75 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 019022 312 GGVITCV 318 (347)
Q Consensus 312 G~~li~~ 318 (347)
|+.+++.
T Consensus 21 ~GLllL~ 27 (54)
T 2knc_A 21 GGLLLLT 27 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
Done!