Query 019022
Match_columns 347
No_of_seqs 138 out of 1792
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 09:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019022.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019022hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 28.1 31 0.0022 16.3 2.9 18 185-202 2-19 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 28.0 1.4E+02 0.01 24.0 23.1 13 40-52 116-128 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 23.2 1.4E+02 0.01 22.3 9.7 29 291-319 95-123 (222)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 4.1 2.5E+02 0.019 13.2 2.2 14 293-306 15-28 (30)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 4.0 4.5E+02 0.033 16.0 3.5 42 304-345 24-65 (82)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 3.8 8.2E+02 0.06 18.6 15.3 35 197-232 71-105 (447)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 3.0 8E+02 0.058 17.2 5.9 36 284-319 70-105 (199)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 3.2E+02 0.023 16.9 2.0 9 316-324 31-39 (91)
9 d1kqfb2 f.23.22.1 (B:246-290) 2.9 4.6E+02 0.033 14.1 2.9 23 301-323 8-30 (45)
10 d1gl4a1 d.22.1.2 (A:399-631) D 1.8 3.4E+02 0.025 20.5 1.0 33 96-129 42-74 (233)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.06 E-value=31 Score=16.31 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019022 185 VIGGLLLLISNLLISVWY 202 (347)
Q Consensus 185 ~~G~~l~l~a~~~~a~~~ 202 (347)
.+|.++.-+++++||.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357778888888877653
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=28.02 E-value=1.4e+02 Score=23.97 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q 019022 40 YFVFVFYSYAATT 52 (347)
Q Consensus 40 p~~~~~~r~~~~~ 52 (347)
...+...|...+.
T Consensus 116 ~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 116 IAVMFVLLFLCGW 128 (447)
T ss_dssp SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555543
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=23.22 E-value=1.4e+02 Score=22.32 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHh
Q 019022 291 AIAAITSFIFLSEALHLGSVIGGVITCVG 319 (347)
Q Consensus 291 v~a~i~~~~~~ge~~~~~~~iG~~li~~g 319 (347)
+.+.+.+..+.+.+++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 44555677778999999888888876653
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.08 E-value=2.5e+02 Score=13.19 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=6.7
Q ss_pred HHHHHHHHhcCccc
Q 019022 293 AAITSFIFLSEALH 306 (347)
Q Consensus 293 a~i~~~~~~ge~~~ 306 (347)
+..+-.+++.|+|.
T Consensus 15 ~lfffaiffreppr 28 (30)
T d2axtt1 15 ALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHTSCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 33333445566653
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.01 E-value=4.5e+02 Score=15.96 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=21.7
Q ss_pred ccchhhhhhHHHHHHhhhhhhccCcccccCCCCCCCCCCCCC
Q 019022 304 ALHLGSVIGGVITCVGFYTVLWGKANDEAGKNKDSCKIPLLQ 345 (347)
Q Consensus 304 ~~~~~~~iG~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~l~ 345 (347)
.+....+.|.+.+-.|+..-..+..+.++.-.++..+.|+..
T Consensus 24 TIPslFiaGwlFVstGLAYdvFGtPrPneYft~~rq~~pli~ 65 (82)
T d2axte1 24 TIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVT 65 (82)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSSCCSCCCCC
T ss_pred cccHHHHhhhhheecccchhhcCCCCcccccccccccCcccc
Confidence 445566777777777766655444333322223344445443
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.76 E-value=8.2e+02 Score=18.64 Aligned_cols=35 Identities=9% Similarity=-0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHH
Q 019022 197 LISVWYIIQTQTMKLYPAEFVVTLLYCLFATIISAP 232 (347)
Q Consensus 197 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (347)
.+++.......+.+|.. .........+...+....
T Consensus 71 ~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~~ 105 (447)
T d1pw4a_ 71 AYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLF 105 (447)
T ss_dssp HHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhh
Confidence 34555556666666666 444444444444444433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=8e+02 Score=17.18 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHhcCccchhhhhhHHHHHHh
Q 019022 284 IFKPLSIAIAAITSFIFLSEALHLGSVIGGVITCVG 319 (347)
Q Consensus 284 ~~~~l~pv~a~i~~~~~~ge~~~~~~~iG~~li~~g 319 (347)
.+.....+........++|..++.....+..+.++.
T Consensus 70 ~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 70 TIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 333333344444445556777777776666666544
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=3.2e+02 Score=16.94 Aligned_cols=9 Identities=0% Similarity=-0.094 Sum_probs=3.6
Q ss_pred HHHhhhhhh
Q 019022 316 TCVGFYTVL 324 (347)
Q Consensus 316 i~~g~~l~~ 324 (347)
++.|..++.
T Consensus 31 ~V~~~~~~~ 39 (91)
T d1fftb2 31 PAILMAVGF 39 (91)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 334444433
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=4.6e+02 Score=14.09 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=15.0
Q ss_pred hcCccchhhhhhHHHHHHhhhhh
Q 019022 301 LSEALHLGSVIGGVITCVGFYTV 323 (347)
Q Consensus 301 ~ge~~~~~~~iG~~li~~g~~l~ 323 (347)
.+....+...+|+.....+.++-
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 45555666777777777766653
No 10
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.84 E-value=3.4e+02 Score=20.48 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=0.0
Q ss_pred HhhhhccChhhHHHHhhhhHHHHHHHHHHhhhcc
Q 019022 96 YTGIAYSSPTLASMIGNLTPGFTFILAIIFRMEN 129 (347)
Q Consensus 96 ~~al~~~~~~~~~~l~~~~pi~~~i~a~~~~~e~ 129 (347)
|.+++.+++..+..+..+.|+...+ +|+|-||.
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~ 74 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGGII-GWMFAVEQ 74 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHHHH-HHHTCEEC
T ss_pred EEEccCCChhHhhhhhhhhhhcCce-eeeEEeec
Done!