BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019023
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 322 bits (826), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/293 (56%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 40 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 99
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 100 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 157
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 158 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YGMGTA RAA S YYKRGD++PGL+VDGMD L V++A +FA + GP+++E+
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 277
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGHSMSDPG YRTR+EI VR + DPI ++ ++ +LA+ +ELK +
Sbjct: 278 TYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 322 bits (824), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/293 (55%), Positives = 213/293 (72%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 40 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 99
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 100 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 157
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 158 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +FA + GP+++E+
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 277
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK +
Sbjct: 278 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 320 bits (821), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/293 (55%), Positives = 211/293 (72%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 40 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 99
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 100 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 157
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 158 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YGMGTA RAA S YYKRGD++PGL+VDGMD L V++A +FA + GP+++E+
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 277
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGH MSDPG YRTR+EI VR + DPI ++ ++ +LA+ +ELK +
Sbjct: 278 TYRYHGHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 320 bits (821), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 213/293 (72%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 40 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 99
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITA+R H RG ++ E+ +EL GRK GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 100 INPTDHLITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 157
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 158 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +FA + GP+++E+
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 277
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGHSMSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK +
Sbjct: 278 TYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 320 bits (820), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 163/293 (55%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R M T+RRME+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 23 EGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 82
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGSMH Y K+ FYGG+G
Sbjct: 83 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKN--FYGGNG 140
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N+AALW LP I +CENN
Sbjct: 141 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 200
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YGMGT+ RAA S YYKRGD++PGL+VDGMD L V++A +FA + GP+++E+
Sbjct: 201 RYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQ 260
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGH MSDPG +YRTR+EI VR + DPI ++ ++ +LA+ +ELK +
Sbjct: 261 TYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 313
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 303 bits (777), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/293 (53%), Positives = 204/293 (69%), Gaps = 3/293 (1%)
Query: 51 EAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG 110
E P + T ++ L ++R T+RR E+ AD LYK K++RGFCHL DGQEA +G+EAG
Sbjct: 23 EGPPVTTVLTREDGLKYYRXXQTVRRXELKADQLYKQKIIRGFCHLCDGQEACCVGLEAG 82
Query: 111 ITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHG 170
I D +ITAYR H RG ++ E+ +EL GRK GC+ GKGGS H Y K+ FYGG+G
Sbjct: 83 INPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAKN--FYGGNG 140
Query: 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230
IVGAQ+PLG G+A A KY+ + V LYGDGAANQGQ+FEA N AALW LP I +CENN
Sbjct: 141 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENN 200
Query: 231 HYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289
YG GT+ RAA S YYKRGD++PGL+VDG D L V++A +FA + GP++ E+
Sbjct: 201 RYGXGTSVERAAASTDYYKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGKGPILXELQ 260
Query: 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
TYRYHGHS SDPG +YRTR+EI VR + DPI ++ + +LA+ +ELK +
Sbjct: 261 TYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKEI 313
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 138/289 (47%), Gaps = 15/289 (5%)
Query: 58 ETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSI 117
E + ++L R+M R ++ + SL + + GF GQEA I + K+D I
Sbjct: 41 ELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFI 99
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
+ YRD + G L + F L R G HG + I+GAQ
Sbjct: 100 LPGYRDVPQIIWHGLPLYQAF--LFSR--GHFHGNQ-----IPEGVNVLPPQIIIGAQYI 150
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G+A K + V GDG +QG +E +N A + PAI V +NN + + T
Sbjct: 151 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTP 210
Query: 238 --EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
+ AK+ + +PG++VDGMD LAV A K A+E A+ GP ++E +RY
Sbjct: 211 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 270
Query: 295 GHSMS-DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
H+MS D + YR++ E+ ++DP+ R RK + A L +E+E +V
Sbjct: 271 PHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNV 318
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 138/289 (47%), Gaps = 15/289 (5%)
Query: 58 ETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSI 117
E + ++L R+M R ++ + SL + + GF GQEA I + K+D I
Sbjct: 40 ELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFI 98
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
+ YRD + G L + F L R G HG + I+GAQ
Sbjct: 99 LPGYRDVPQIIWHGLPLYQAF--LFSR--GHFHGNQ-----IPEGVNVLPPQIIIGAQYI 149
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G+A K + V GDG +QG +E +N A + PAI V +NN + + T
Sbjct: 150 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTP 209
Query: 238 --EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
+ AK+ + +PG++VDGMD LAV A K A+E A+ GP ++E +RY
Sbjct: 210 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269
Query: 295 GHSMS-DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
H+MS D + YR++ E+ ++DP+ R RK + A L +E+E +V
Sbjct: 270 PHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNV 317
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 137/289 (47%), Gaps = 15/289 (5%)
Query: 58 ETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSI 117
E + ++L R+M R ++ + SL + + GF GQEA I + K+D I
Sbjct: 41 ELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFI 99
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
+ YRD + G L + F L R G HG + I+GAQ
Sbjct: 100 LPGYRDVPQIIWHGLPLYQAF--LFSR--GHFHGNQ-----IPEGVNVLPPQIIIGAQYI 150
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G+A K + V GDG +QG +E +N A + PAI V +NN + T
Sbjct: 151 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTP 210
Query: 238 --EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
+ AK+ + +PG++VDGMD LAV A K A+E A+ GP ++E +RY
Sbjct: 211 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 270
Query: 295 GHSMS-DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
H+MS D + YR++ E+ ++DP+ R RK + A L +E+E +V
Sbjct: 271 PHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNV 318
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 138/289 (47%), Gaps = 15/289 (5%)
Query: 58 ETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSI 117
E + ++L R+M R ++ + SL + + GF GQEA I + K+D I
Sbjct: 40 ELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFI 98
Query: 118 ITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIP 177
+ YRD + G L + F L R G HG + I+GAQ
Sbjct: 99 LPGYRDVPQIIWHGLPLYQAF--LFSR--GHFHGNQ-----IPEGVNVLPPQIIIGAQYI 149
Query: 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA 237
G+A K + V GDG +QG ++ +N A + PAI V +NN + + T
Sbjct: 150 QAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTP 209
Query: 238 --EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294
+ AK+ + +PG++VDGMD LAV A K A+E A+ GP ++E +RY
Sbjct: 210 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269
Query: 295 GHSMS-DPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSV 342
H+MS D + YR++ E+ ++DP+ R RK + A L +E+E +V
Sbjct: 270 PHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEEENNV 317
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 5/239 (2%)
Query: 99 GQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMH 157
G EA + + I D + YRDH L G L E+ +++ K + G+ H
Sbjct: 72 GHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEH 131
Query: 158 FYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA 217
K F+ + + +P G A + K + V +GDGA ++G + +N AA
Sbjct: 132 PGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAA 191
Query: 218 LWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAK 275
+ PA+ + ENN Y + SP+ + +PG VDGMD LA K A
Sbjct: 192 VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAV 251
Query: 276 EHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDL 333
E A + GP ++E+ YRY HS +D S YR ++E++ R+ +DPI R R+ + A L
Sbjct: 252 ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGL 309
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR HS SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR HS SD S YR+ DE+ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR HS SD S YR DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR H+ SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR H SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR H SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR H SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR H SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + A R+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR HS SD S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + AYR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S SD S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S SD S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + +R+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S SD S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TY S SD S YR+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + YR+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S S S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 16/302 (5%)
Query: 49 QCEAPSRSVETTPKELLSFFRQMATMRRME-IAADSLYKAKLVRGFCHLYDGQEAVAIGM 107
Q PS +++L ++ M + M+ I +S + ++ F G+E +G
Sbjct: 42 QIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI--SFYMTNYGEEGTHVGS 99
Query: 108 EAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYG 167
A + D + R+ + R L ++ G G+ +H+ K+ F
Sbjct: 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVT 159
Query: 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227
+ QIP G A+A K + V +G+GAA++G N AA + P I C
Sbjct: 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFC 219
Query: 228 ENNHYGMGTA---EWR----AAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL- 279
NN Y + T ++R AA+ P Y + ++VDG D AV A K A+ A+
Sbjct: 220 RNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Query: 280 KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKEL 339
+N P ++E TYR S SD S +R+ DE++ ++ PI R+R +L+ E++
Sbjct: 275 ENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQE 334
Query: 340 KS 341
K+
Sbjct: 335 KA 336
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 5/249 (2%)
Query: 99 GQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHF 158
G+EA+ G + + D YR + R +L+E+ +L+ + G+ + +
Sbjct: 111 GEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMY 170
Query: 159 YKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAAL 218
+++GF+ G + Q G A A D + A GDGA + AL A +
Sbjct: 171 SVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHV 230
Query: 219 WDLPAILVCENNHYGMGTAEWRA-AKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAK 275
+ P IL NN + + T + A +S ++ RG + L+VDG D +AV A ++A
Sbjct: 231 YRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 290
Query: 276 EHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLA 334
E A + GP ++E TYR HS SD S YR D+ S DPI R+++ ++
Sbjct: 291 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG-DPIARLKQHLIKIGHW 349
Query: 335 TEKELKSVS 343
+E+E ++ +
Sbjct: 350 SEEEHQATT 358
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 5/249 (2%)
Query: 99 GQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHF 158
G+EA+ G + + D YR R +L+E +L+ + G+ + +
Sbjct: 110 GEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXY 169
Query: 159 YKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAAL 218
+++GF+ G + Q G A A D + A GDGA + AL A +
Sbjct: 170 SVREAGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGATAESDFHTALTFAHV 229
Query: 219 WDLPAILVCENNHYGMGTAEWRA-AKSPSYYKRGD--YVPGLKVDGMDALAVKQACKFAK 275
+ P IL NN + + T + A +S ++ RG + L+VDG D +AV A ++A
Sbjct: 230 YRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289
Query: 276 EHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLA 334
E A + GP ++E TYR HS SD S YR D+ S DPI R+++ ++
Sbjct: 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG-DPIARLKQHLIKIGHW 348
Query: 335 TEKELKSVS 343
+E+E ++ +
Sbjct: 349 SEEEHQATT 357
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 170 GIVGAQIPLGCGLAFAQKY-SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VC 227
G +G + CG+A+ KY K + L GDG ++G ++EA+ A+++ L ++ +
Sbjct: 121 GSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 180
Query: 228 ENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
+ N G + Y KR + G +D +V++ CK
Sbjct: 181 DINRLGQSDPAPLQHQMDIYQKRCEAF-GWHAIIVDGHSVEELCK 224
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 170 GIVGAQIPLGCGLAFAQKY-SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAIL-VC 227
G +G + CG+A+ KY K + L GDG ++G ++EA+ A+++ L ++ +
Sbjct: 119 GSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAIL 178
Query: 228 ENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272
+ N G + Y KR + G +D +V++ CK
Sbjct: 179 DINRLGQSDPAPLQHQMDIYQKRCEAF-GWHAIIVDGHSVEELCK 222
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 141 LMGRKD--GCSHGKGGSMHFYKKDSGFYG----GHGIVGAQIPLGCGLAFAQKYSKDETV 194
L GR+D G KGG F + Y GH I G G+A A +
Sbjct: 88 LTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHS--STSISAGIGIAVAAEKEGKNRR 145
Query: 195 TFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH 231
T + GDGA G FEA N A D+ P LV N++
Sbjct: 146 TVCVIGDGAITAGXAFEAXNHAG--DIRPDXLVILNDN 181
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292
K +V G+K++ +D L + C LK G M++ +D+Y+
Sbjct: 264 KTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQ 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,561,833
Number of Sequences: 62578
Number of extensions: 458877
Number of successful extensions: 911
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 43
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)