Query 019023
Match_columns 347
No_of_seqs 283 out of 2321
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0225 Pyruvate dehydrogenase 100.0 4E-98 9E-103 700.1 25.6 329 16-347 11-343 (394)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 4.1E-85 9E-90 630.9 31.9 291 55-346 20-315 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 1.8E-79 3.9E-84 599.9 34.3 294 53-346 21-314 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 1.1E-74 2.3E-79 563.7 34.8 292 53-346 11-312 (341)
5 PLN02374 pyruvate dehydrogenas 100.0 2E-73 4.3E-78 567.5 33.7 292 53-346 77-378 (433)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 1.6E-73 3.5E-78 550.7 31.3 284 61-346 1-287 (315)
7 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.1E-71 2.5E-76 533.1 31.6 279 67-346 1-282 (293)
8 PF00676 E1_dh: Dehydrogenase 100.0 4.2E-70 9E-75 523.5 27.7 276 70-346 2-280 (300)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 7.4E-68 1.6E-72 516.2 32.5 280 56-346 18-300 (341)
10 KOG1182 Branched chain alpha-k 100.0 1.8E-61 3.8E-66 449.9 19.5 294 52-346 76-373 (432)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.3E-59 2.8E-64 500.7 31.0 291 44-346 173-502 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3.9E-54 8.5E-59 457.1 29.3 297 44-346 172-503 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.1E-50 2.5E-55 379.8 18.4 229 77-310 1-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.2E-36 4.8E-41 315.3 26.1 294 44-345 477-806 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.6E-36 7.8E-41 311.8 22.5 232 47-297 3-249 (581)
16 COG0567 SucA 2-oxoglutarate de 100.0 1E-29 2.3E-34 265.6 22.1 294 44-346 159-485 (906)
17 KOG0450 2-oxoglutarate dehydro 100.0 1.1E-29 2.4E-34 256.1 20.3 295 44-346 232-561 (1017)
18 KOG0451 Predicted 2-oxoglutara 100.0 1.4E-28 3.1E-33 243.4 16.7 288 44-345 140-478 (913)
19 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 4.3E-25 9.3E-30 230.5 21.1 231 48-299 2-282 (617)
20 cd02007 TPP_DXS Thiamine pyrop 99.9 2.7E-24 5.8E-29 194.7 19.5 169 113-296 24-195 (195)
21 PRK12754 transketolase; Review 99.9 6.2E-24 1.3E-28 222.5 23.3 151 163-316 107-275 (663)
22 PTZ00089 transketolase; Provis 99.9 1.3E-23 2.7E-28 221.1 25.5 215 92-316 27-277 (661)
23 TIGR00232 tktlase_bact transke 99.9 1.7E-23 3.7E-28 219.8 23.8 149 163-315 103-270 (653)
24 cd02012 TPP_TK Thiamine pyroph 99.9 8.2E-23 1.8E-27 192.0 24.0 135 164-300 99-236 (255)
25 PRK05899 transketolase; Review 99.9 2.8E-23 6E-28 217.7 23.0 229 72-315 13-276 (624)
26 PRK05444 1-deoxy-D-xylulose-5- 99.9 1.7E-23 3.6E-28 217.6 20.7 233 47-299 7-250 (580)
27 PRK12753 transketolase; Review 99.9 3.2E-23 6.9E-28 217.9 21.8 133 163-298 107-253 (663)
28 COG3959 Transketolase, N-termi 99.9 2.4E-23 5.2E-28 187.8 17.7 213 66-293 9-243 (243)
29 PLN02790 transketolase 99.9 1.9E-22 4.1E-27 212.0 24.9 197 92-298 15-245 (654)
30 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.8E-22 3.9E-27 211.4 20.6 232 47-299 34-328 (677)
31 PLN02234 1-deoxy-D-xylulose-5- 99.9 3.9E-22 8.4E-27 207.4 22.3 236 46-301 66-331 (641)
32 PRK12571 1-deoxy-D-xylulose-5- 99.9 2.3E-22 5.1E-27 210.8 19.9 231 46-298 8-290 (641)
33 PF13292 DXP_synthase_N: 1-deo 99.9 6.3E-23 1.4E-27 190.5 12.9 219 48-290 2-270 (270)
34 cd02017 TPP_E1_EcPDC_like Thia 99.9 1.2E-20 2.7E-25 184.6 25.4 228 92-330 31-361 (386)
35 COG1154 Dxs Deoxyxylulose-5-ph 99.9 1.7E-21 3.7E-26 196.9 18.4 231 47-299 5-287 (627)
36 PF00456 Transketolase_N: Tran 99.9 1.2E-21 2.6E-26 190.2 16.6 150 164-316 105-272 (332)
37 PLN02225 1-deoxy-D-xylulose-5- 99.9 1.3E-20 2.8E-25 196.7 19.2 229 46-294 78-367 (701)
38 cd02011 TPP_PK Thiamine pyroph 99.8 2.1E-20 4.5E-25 171.8 14.2 165 98-279 2-174 (227)
39 TIGR00759 aceE pyruvate dehydr 99.8 5.2E-18 1.1E-22 179.2 26.9 132 164-297 183-394 (885)
40 TIGR03186 AKGDH_not_PDH alpha- 99.8 1.6E-17 3.4E-22 177.2 27.1 134 164-299 183-396 (889)
41 PRK11864 2-ketoisovalerate fer 99.8 2.1E-18 4.5E-23 164.9 16.1 166 120-291 14-207 (300)
42 PRK13012 2-oxoacid dehydrogena 99.8 1.2E-16 2.7E-21 170.9 26.2 149 165-315 198-432 (896)
43 cd02013 TPP_Xsc_like Thiamine 99.8 4.4E-18 9.5E-23 154.0 11.9 119 168-294 51-182 (196)
44 COG0021 TktA Transketolase [Ca 99.8 3.5E-17 7.6E-22 166.7 18.4 132 164-298 110-255 (663)
45 KOG0523 Transketolase [Carbohy 99.7 1.9E-16 4.1E-21 159.8 21.1 213 70-297 13-247 (632)
46 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 2E-17 4.4E-22 146.3 12.4 113 167-290 45-171 (172)
47 cd02006 TPP_Gcl Thiamine pyrop 99.7 4.6E-17 9.9E-22 147.9 11.9 120 167-294 54-197 (202)
48 PRK09405 aceE pyruvate dehydro 99.7 2.5E-15 5.4E-20 160.5 26.3 130 165-296 190-399 (891)
49 cd00568 TPP_enzymes Thiamine p 99.7 7E-17 1.5E-21 141.0 11.2 114 166-290 42-168 (168)
50 cd02002 TPP_BFDC Thiamine pyro 99.7 8.6E-17 1.9E-21 142.7 11.3 110 170-290 49-178 (178)
51 cd02014 TPP_POX Thiamine pyrop 99.7 3.4E-16 7.4E-21 139.4 12.0 114 168-292 49-174 (178)
52 cd02015 TPP_AHAS Thiamine pyro 99.7 3E-16 6.6E-21 140.6 11.2 114 168-292 48-175 (186)
53 cd02008 TPP_IOR_alpha Thiamine 99.7 8E-16 1.7E-20 137.1 13.7 116 167-290 48-176 (178)
54 cd02010 TPP_ALS Thiamine pyrop 99.7 3.9E-16 8.5E-21 139.1 11.6 115 167-292 45-171 (177)
55 PRK06163 hypothetical protein; 99.7 1.4E-15 3.1E-20 138.4 14.5 129 169-313 56-190 (202)
56 cd03371 TPP_PpyrDC Thiamine py 99.7 1.3E-15 2.7E-20 137.3 14.0 130 169-312 47-181 (188)
57 cd03372 TPP_ComE Thiamine pyro 99.6 3.1E-15 6.8E-20 133.6 14.0 114 169-295 41-159 (179)
58 cd02003 TPP_IolD Thiamine pyro 99.6 1.8E-15 3.9E-20 137.9 12.2 117 167-294 45-187 (205)
59 PF02775 TPP_enzyme_C: Thiamin 99.6 7E-16 1.5E-20 133.8 8.6 113 167-288 25-153 (153)
60 cd02001 TPP_ComE_PpyrDC Thiami 99.6 1.8E-15 3.9E-20 132.4 11.1 111 169-291 41-155 (157)
61 cd02005 TPP_PDC_IPDC Thiamine 99.6 2.7E-15 5.7E-20 134.5 12.2 116 167-292 47-175 (183)
62 PRK05261 putative phosphoketol 99.6 1.1E-14 2.4E-19 153.8 17.6 201 90-297 48-289 (785)
63 PRK07524 hypothetical protein; 99.6 2.2E-15 4.9E-20 155.4 12.1 117 168-295 405-533 (535)
64 TIGR03846 sulfopy_beta sulfopy 99.6 8.8E-15 1.9E-19 131.0 13.9 113 169-294 41-159 (181)
65 COG0028 IlvB Thiamine pyrophos 99.6 5.4E-15 1.2E-19 152.9 12.5 116 167-293 405-533 (550)
66 PRK06154 hypothetical protein; 99.6 6.8E-15 1.5E-19 152.9 12.3 117 168-292 429-556 (565)
67 TIGR01504 glyox_carbo_lig glyo 99.6 8.6E-15 1.9E-19 152.8 10.9 117 168-292 416-556 (588)
68 cd02009 TPP_SHCHC_synthase Thi 99.6 8.9E-15 1.9E-19 130.0 9.4 111 168-290 49-174 (175)
69 cd03375 TPP_OGFOR Thiamine pyr 99.6 2.4E-14 5.3E-19 129.4 12.3 111 169-290 50-183 (193)
70 PRK06725 acetolactate synthase 99.6 1.2E-14 2.7E-19 151.1 11.8 115 167-292 419-546 (570)
71 PRK12474 hypothetical protein; 99.6 1.3E-14 2.8E-19 149.3 11.7 113 167-290 386-518 (518)
72 PRK08327 acetolactate synthase 99.6 1.5E-14 3.2E-19 150.5 12.1 117 168-290 428-566 (569)
73 PRK06546 pyruvate dehydrogenas 99.6 2.1E-14 4.5E-19 149.7 12.6 115 168-293 406-532 (578)
74 PRK08266 hypothetical protein; 99.6 1.8E-14 3.8E-19 148.9 12.0 118 168-296 400-530 (542)
75 PRK07525 sulfoacetaldehyde ace 99.6 1.1E-14 2.3E-19 152.0 10.4 119 168-294 433-565 (588)
76 PRK07979 acetolactate synthase 99.6 1.5E-14 3.3E-19 150.4 11.5 118 167-292 418-549 (574)
77 PRK07064 hypothetical protein; 99.6 2.7E-14 5.9E-19 147.5 12.6 120 164-294 399-531 (544)
78 PRK09107 acetolactate synthase 99.6 1.9E-14 4E-19 150.5 11.5 114 168-292 428-555 (595)
79 PRK07092 benzoylformate decarb 99.6 2.6E-14 5.6E-19 147.4 12.4 113 167-290 404-529 (530)
80 PRK07418 acetolactate synthase 99.5 2.9E-14 6.3E-19 149.6 11.3 115 167-292 431-560 (616)
81 PRK07586 hypothetical protein; 99.5 3.3E-14 7.1E-19 146.0 11.4 113 167-290 382-514 (514)
82 cd03376 TPP_PFOR_porB_like Thi 99.5 4E-14 8.6E-19 131.8 10.9 122 166-296 58-205 (235)
83 PRK11269 glyoxylate carboligas 99.5 2.8E-14 6E-19 149.0 11.0 119 167-293 416-558 (591)
84 PRK05858 hypothetical protein; 99.5 4.7E-14 1E-18 145.9 12.5 115 168-293 405-532 (542)
85 TIGR02418 acolac_catab acetola 99.5 3.8E-14 8.1E-19 146.4 11.8 116 167-293 405-532 (539)
86 TIGR03457 sulphoacet_xsc sulfo 99.5 3.2E-14 6.9E-19 148.2 11.2 119 168-294 428-560 (579)
87 PRK09124 pyruvate dehydrogenas 99.5 5.4E-14 1.2E-18 146.3 12.7 115 167-292 405-531 (574)
88 PRK06965 acetolactate synthase 99.5 4.1E-14 8.9E-19 147.7 11.5 116 167-292 434-563 (587)
89 CHL00099 ilvB acetohydroxyacid 99.5 4.3E-14 9.3E-19 147.5 11.5 115 167-292 427-556 (585)
90 TIGR02720 pyruv_oxi_spxB pyruv 99.5 7.5E-14 1.6E-18 145.4 13.0 117 168-293 406-534 (575)
91 PRK06112 acetolactate synthase 99.5 6.3E-14 1.4E-18 145.9 12.4 114 168-292 435-561 (578)
92 PRK06466 acetolactate synthase 99.5 7.4E-14 1.6E-18 145.3 12.6 116 167-292 420-549 (574)
93 PRK08979 acetolactate synthase 99.5 4.9E-14 1.1E-18 146.6 11.2 115 168-292 419-547 (572)
94 PRK08155 acetolactate synthase 99.5 6.1E-14 1.3E-18 145.7 11.8 114 168-292 417-544 (564)
95 PRK08273 thiamine pyrophosphat 99.5 9.5E-14 2.1E-18 145.2 12.4 118 167-294 412-549 (597)
96 PRK08527 acetolactate synthase 99.5 1E-13 2.2E-18 144.0 12.2 116 168-294 412-541 (563)
97 TIGR00118 acolac_lg acetolacta 99.5 8.7E-14 1.9E-18 144.3 11.5 114 168-292 410-537 (558)
98 cd02018 TPP_PFOR Thiamine pyro 99.5 1.1E-13 2.3E-18 129.1 10.4 118 168-291 62-203 (237)
99 PRK06456 acetolactate synthase 99.5 1E-13 2.2E-18 144.1 11.4 116 167-293 418-547 (572)
100 PLN02573 pyruvate decarboxylas 99.5 9.5E-14 2.1E-18 144.7 11.1 116 167-291 425-552 (578)
101 PRK08617 acetolactate synthase 99.5 1.2E-13 2.5E-18 143.2 11.7 114 168-292 412-537 (552)
102 PRK08322 acetolactate synthase 99.5 1.5E-13 3.3E-18 142.1 12.5 114 168-292 404-529 (547)
103 TIGR03393 indolpyr_decarb indo 99.5 8.2E-14 1.8E-18 144.0 10.4 114 167-291 401-527 (539)
104 PRK08199 thiamine pyrophosphat 99.5 1.8E-13 3.8E-18 142.0 12.8 115 167-292 412-539 (557)
105 PRK05778 2-oxoglutarate ferred 99.5 3.4E-13 7.4E-18 129.6 13.8 133 169-315 69-224 (301)
106 PLN02470 acetolactate synthase 99.5 1.4E-13 3.1E-18 143.6 12.1 115 167-292 423-558 (585)
107 PRK06457 pyruvate dehydrogenas 99.5 1.6E-13 3.5E-18 142.1 12.2 115 167-292 393-520 (549)
108 PRK08611 pyruvate oxidase; Pro 99.5 1.5E-13 3.3E-18 143.1 12.0 115 169-294 407-533 (576)
109 PRK06048 acetolactate synthase 99.5 1.9E-13 4.1E-18 142.0 12.5 114 168-292 412-539 (561)
110 PRK06882 acetolactate synthase 99.5 2.3E-13 5E-18 141.6 12.7 117 167-293 418-548 (574)
111 PRK07710 acetolactate synthase 99.5 2.3E-13 4.9E-18 141.7 12.5 115 167-292 421-549 (571)
112 PRK08978 acetolactate synthase 99.5 2.6E-13 5.6E-18 140.5 12.0 115 168-293 399-527 (548)
113 TIGR03297 Ppyr-DeCO2ase phosph 99.5 8.7E-13 1.9E-17 129.9 14.1 132 168-313 219-355 (361)
114 PRK09628 oorB 2-oxoglutarate-a 99.5 3.3E-13 7.2E-18 128.3 10.8 112 170-292 68-202 (277)
115 TIGR03254 oxalate_oxc oxalyl-C 99.5 6.2E-13 1.3E-17 137.9 13.5 113 168-292 415-539 (554)
116 PRK09259 putative oxalyl-CoA d 99.4 8E-13 1.7E-17 137.5 13.1 113 168-292 422-547 (569)
117 PRK07789 acetolactate synthase 99.4 3.7E-13 8.1E-18 141.2 10.4 116 167-292 444-577 (612)
118 PRK06276 acetolactate synthase 99.4 6.6E-13 1.4E-17 138.6 11.8 114 168-292 417-544 (586)
119 PRK07282 acetolactate synthase 99.4 4E-13 8.6E-18 139.7 10.0 113 168-292 416-542 (566)
120 TIGR03394 indol_phenyl_DC indo 99.4 6.8E-13 1.5E-17 137.2 11.4 113 168-291 401-521 (535)
121 PRK11869 2-oxoacid ferredoxin 99.4 1.5E-12 3.1E-17 124.0 11.6 114 168-290 58-192 (280)
122 PRK11866 2-oxoacid ferredoxin 99.4 3E-12 6.5E-17 121.8 12.9 115 167-290 56-191 (279)
123 PRK07449 2-succinyl-5-enolpyru 99.4 8.9E-13 1.9E-17 137.0 8.9 111 169-291 424-549 (568)
124 PRK11867 2-oxoglutarate ferred 99.4 3.2E-12 7E-17 122.2 12.0 114 168-290 67-201 (286)
125 TIGR02177 PorB_KorB 2-oxoacid: 99.4 4.3E-12 9.3E-17 121.2 11.6 112 169-290 52-185 (287)
126 TIGR03336 IOR_alpha indolepyru 99.3 1.3E-11 2.7E-16 129.3 13.2 119 164-290 397-529 (595)
127 COG3960 Glyoxylate carboligase 99.2 3.7E-11 8.1E-16 114.8 7.0 160 134-301 375-566 (592)
128 PRK11865 pyruvate ferredoxin o 99.2 9.3E-10 2E-14 105.6 16.0 179 163-346 62-288 (299)
129 PLN02980 2-oxoglutarate decarb 99.1 1.1E-10 2.5E-15 134.1 10.1 115 166-292 755-890 (1655)
130 COG3961 Pyruvate decarboxylase 99.1 1.3E-09 2.9E-14 109.4 13.3 159 98-292 363-536 (557)
131 COG2609 AceE Pyruvate dehydrog 99.0 3.5E-08 7.6E-13 101.9 22.2 167 167-341 189-435 (887)
132 KOG1185 Thiamine pyrophosphate 99.0 1.4E-09 3.1E-14 108.2 11.8 122 161-292 420-561 (571)
133 KOG4166 Thiamine pyrophosphate 99.0 4.6E-10 1E-14 110.1 7.0 118 167-295 521-651 (675)
134 KOG1184 Thiamine pyrophosphate 98.5 5.9E-07 1.3E-11 90.4 9.9 115 167-291 412-539 (561)
135 COG3962 Acetolactate synthase 98.5 6.1E-07 1.3E-11 89.4 9.5 114 168-292 442-576 (617)
136 COG1013 PorB Pyruvate:ferredox 98.1 5.2E-05 1.1E-09 73.0 14.0 115 167-290 67-203 (294)
137 PF09364 XFP_N: XFP N-terminal 98.1 6E-06 1.3E-10 80.5 6.6 134 155-298 125-288 (379)
138 COG4231 Indolepyruvate ferredo 97.6 0.00016 3.5E-09 75.0 8.5 111 169-289 427-552 (640)
139 cd03377 TPP_PFOR_PNO Thiamine 97.6 0.0018 3.9E-08 63.9 14.9 93 193-290 152-266 (365)
140 COG1165 MenD 2-succinyl-6-hydr 97.4 0.00049 1.1E-08 70.5 8.0 112 169-293 422-548 (566)
141 COG3957 Phosphoketolase [Carbo 96.9 0.0041 8.9E-08 65.3 8.7 111 156-271 139-257 (793)
142 TIGR02176 pyruv_ox_red pyruvat 96.3 0.068 1.5E-06 60.6 14.3 94 193-291 952-1067(1165)
143 cd06586 TPP_enzyme_PYR Pyrimid 96.1 0.072 1.6E-06 45.3 10.6 102 176-288 48-152 (154)
144 cd07039 TPP_PYR_POX Pyrimidine 95.9 0.13 2.8E-06 45.2 11.3 100 178-288 53-156 (164)
145 cd07035 TPP_PYR_POX_like Pyrim 95.8 0.13 2.8E-06 44.1 10.8 103 175-288 46-153 (155)
146 PRK09193 indolepyruvate ferred 95.7 0.043 9.4E-07 61.7 9.3 113 168-289 479-615 (1165)
147 PRK13030 2-oxoacid ferredoxin 95.7 0.039 8.5E-07 62.1 8.9 112 169-289 467-601 (1159)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 95.5 0.22 4.8E-06 42.9 11.3 89 194-288 67-158 (160)
149 PRK07119 2-ketoisovalerate fer 95.1 0.2 4.4E-06 49.5 10.8 112 175-297 60-176 (352)
150 PRK08659 2-oxoglutarate ferred 94.6 0.32 6.9E-06 48.6 10.8 114 174-298 59-177 (376)
151 PRK13029 2-oxoacid ferredoxin 94.4 0.16 3.5E-06 57.2 8.9 85 169-259 494-584 (1186)
152 TIGR03845 sulfopyru_alph sulfo 94.4 0.85 1.8E-05 39.9 11.8 104 173-289 44-153 (157)
153 PF02776 TPP_enzyme_N: Thiamin 94.2 0.27 5.9E-06 43.2 8.4 106 174-289 50-160 (172)
154 PF01855 POR_N: Pyruvate flavo 93.5 0.29 6.3E-06 45.6 7.6 107 176-297 49-160 (230)
155 cd07038 TPP_PYR_PDC_IPDC_like 93.4 1.1 2.3E-05 39.2 10.7 106 174-288 46-160 (162)
156 cd07033 TPP_PYR_DXS_TK_like Py 93.0 1.4 2.9E-05 38.3 10.7 101 176-288 52-154 (156)
157 cd07037 TPP_PYR_MenD Pyrimidin 92.8 0.71 1.5E-05 40.6 8.7 104 176-289 48-161 (162)
158 PRK08366 vorA 2-ketoisovalerat 92.3 1.4 3.1E-05 44.2 11.2 108 175-294 61-170 (390)
159 TIGR03710 OAFO_sf 2-oxoacid:ac 92.2 0.99 2.1E-05 47.5 10.2 110 175-293 249-363 (562)
160 PRK08611 pyruvate oxidase; Pro 91.5 1.6 3.6E-05 45.8 11.0 105 176-290 56-163 (576)
161 PRK09627 oorA 2-oxoglutarate-a 91.2 1.4 3.1E-05 44.0 9.7 112 175-298 59-176 (375)
162 PRK06457 pyruvate dehydrogenas 91.0 1.9 4.1E-05 45.0 10.8 104 177-290 53-159 (549)
163 PRK08978 acetolactate synthase 90.1 2.1 4.6E-05 44.6 10.2 104 176-290 51-159 (548)
164 TIGR03457 sulphoacet_xsc sulfo 90.0 1.5 3.1E-05 46.2 9.0 102 177-289 53-158 (579)
165 PRK07524 hypothetical protein; 89.9 2.8 6E-05 43.6 10.9 106 176-289 52-162 (535)
166 PRK07979 acetolactate synthase 89.9 2.3 5E-05 44.6 10.4 104 177-290 56-163 (574)
167 TIGR03254 oxalate_oxc oxalyl-C 89.4 2.8 6.1E-05 43.7 10.6 106 177-290 54-163 (554)
168 COG0028 IlvB Thiamine pyrophos 89.3 2.6 5.7E-05 44.2 10.2 101 176-289 52-159 (550)
169 PRK06466 acetolactate synthase 89.2 2.8 6.1E-05 44.0 10.4 103 178-290 57-163 (574)
170 PRK07586 hypothetical protein; 89.1 2.7 5.9E-05 43.3 10.1 105 176-290 52-160 (514)
171 PRK07789 acetolactate synthase 89.1 2.9 6.2E-05 44.3 10.5 103 177-290 83-190 (612)
172 PRK06725 acetolactate synthase 89.0 3.2 6.9E-05 43.6 10.7 103 177-290 66-173 (570)
173 PRK07525 sulfoacetaldehyde ace 89.0 3.3 7.2E-05 43.6 10.8 103 177-290 57-163 (588)
174 PRK06456 acetolactate synthase 89.0 3.2 6.9E-05 43.5 10.6 104 176-290 56-164 (572)
175 PRK08367 porA pyruvate ferredo 89.0 4.4 9.6E-05 40.8 11.1 110 175-297 62-175 (394)
176 PRK07064 hypothetical protein; 88.9 3.7 8.1E-05 42.6 11.0 106 177-290 55-165 (544)
177 PRK11269 glyoxylate carboligas 88.9 3.7 8E-05 43.3 11.1 105 177-290 56-164 (591)
178 TIGR00118 acolac_lg acetolacta 88.3 4 8.8E-05 42.6 10.8 102 177-289 53-159 (558)
179 PRK08155 acetolactate synthase 88.3 3.8 8.2E-05 42.9 10.6 104 176-289 64-171 (564)
180 PRK07418 acetolactate synthase 88.2 4.5 9.7E-05 42.9 11.2 104 176-290 73-181 (616)
181 PRK12474 hypothetical protein; 88.1 3.9 8.5E-05 42.3 10.5 104 177-290 57-164 (518)
182 PRK08322 acetolactate synthase 88.1 4.2 9.2E-05 42.2 10.8 105 176-290 51-159 (547)
183 PRK07710 acetolactate synthase 88.1 3.8 8.2E-05 43.0 10.5 104 176-290 66-174 (571)
184 PLN02470 acetolactate synthase 88.1 3.4 7.5E-05 43.4 10.2 104 176-290 64-172 (585)
185 PRK08266 hypothetical protein; 88.0 4.8 0.0001 41.8 11.1 105 177-290 57-167 (542)
186 TIGR01504 glyox_carbo_lig glyo 87.8 4 8.8E-05 43.0 10.5 105 177-290 55-163 (588)
187 PRK06112 acetolactate synthase 87.7 4.3 9.4E-05 42.6 10.6 103 177-290 63-170 (578)
188 TIGR02720 pyruv_oxi_spxB pyruv 87.6 4.3 9.4E-05 42.6 10.6 103 178-291 53-159 (575)
189 PRK08617 acetolactate synthase 87.3 4.2 9.1E-05 42.4 10.2 102 178-290 57-163 (552)
190 PRK09259 putative oxalyl-CoA d 87.2 5.6 0.00012 41.7 11.1 104 177-289 61-169 (569)
191 PRK06882 acetolactate synthase 87.2 4.8 0.0001 42.2 10.6 103 177-290 56-163 (574)
192 PRK05858 hypothetical protein; 87.1 5.2 0.00011 41.6 10.8 104 176-290 55-163 (542)
193 PRK08199 thiamine pyrophosphat 87.0 5.4 0.00012 41.6 10.9 103 177-289 60-166 (557)
194 PRK06276 acetolactate synthase 87.0 5.9 0.00013 41.7 11.1 104 176-290 51-159 (586)
195 TIGR02418 acolac_catab acetola 86.9 5.8 0.00012 41.2 10.9 103 178-290 51-157 (539)
196 TIGR03297 Ppyr-DeCO2ase phosph 86.9 3.3 7.1E-05 41.2 8.7 112 171-289 34-151 (361)
197 PRK09107 acetolactate synthase 86.9 4.1 8.9E-05 43.1 9.9 105 176-290 62-170 (595)
198 PRK09622 porA pyruvate flavodo 86.7 6.2 0.00013 39.9 10.7 106 175-292 68-177 (407)
199 PRK07282 acetolactate synthase 86.2 5.4 0.00012 41.9 10.3 104 176-290 61-169 (566)
200 PRK08979 acetolactate synthase 85.6 5.5 0.00012 41.8 10.1 104 176-290 55-163 (572)
201 CHL00099 ilvB acetohydroxyacid 85.2 6.6 0.00014 41.3 10.4 103 177-290 65-172 (585)
202 cd07036 TPP_PYR_E1-PDHc-beta_l 84.8 7.6 0.00016 34.2 9.1 98 176-287 57-164 (167)
203 PRK06048 acetolactate synthase 84.8 8 0.00017 40.4 10.8 103 176-289 58-165 (561)
204 PRK08327 acetolactate synthase 84.4 3.7 8.1E-05 43.1 8.2 105 177-289 64-179 (569)
205 TIGR03394 indol_phenyl_DC indo 84.2 7.1 0.00015 40.7 10.0 105 178-290 53-164 (535)
206 PRK08527 acetolactate synthase 84.1 7.9 0.00017 40.5 10.4 104 176-290 54-162 (563)
207 PRK08273 thiamine pyrophosphat 84.0 6.5 0.00014 41.5 9.8 103 177-290 56-163 (597)
208 TIGR03336 IOR_alpha indolepyru 83.7 6.7 0.00015 41.5 9.7 107 176-297 59-168 (595)
209 PRK06965 acetolactate synthase 83.1 11 0.00023 39.8 10.9 103 177-290 73-180 (587)
210 PRK06154 hypothetical protein; 83.1 7.6 0.00016 40.8 9.8 91 192-290 82-175 (565)
211 PRK09124 pyruvate dehydrogenas 83.0 10 0.00022 39.8 10.7 102 177-289 55-160 (574)
212 PTZ00089 transketolase; Provis 82.9 8.9 0.00019 41.2 10.3 111 168-288 407-519 (661)
213 TIGR00204 dxs 1-deoxy-D-xylulo 82.4 12 0.00025 40.0 10.9 110 168-289 356-468 (617)
214 PF02779 Transket_pyr: Transke 82.0 17 0.00037 31.9 10.3 114 169-289 53-171 (178)
215 TIGR00232 tktlase_bact transke 80.9 12 0.00026 40.1 10.5 110 169-288 401-512 (653)
216 PRK06546 pyruvate dehydrogenas 80.7 15 0.00032 38.7 10.9 104 177-290 55-161 (578)
217 PRK12571 1-deoxy-D-xylulose-5- 80.3 14 0.00031 39.5 10.7 109 168-289 365-477 (641)
218 PLN02234 1-deoxy-D-xylulose-5- 79.1 11 0.00023 40.5 9.2 108 168-286 403-512 (641)
219 TIGR00173 menD 2-succinyl-5-en 78.7 7.5 0.00016 39.3 7.7 46 178-229 53-98 (432)
220 PRK07092 benzoylformate decarb 78.6 17 0.00037 37.7 10.5 105 177-290 62-170 (530)
221 KOG4166 Thiamine pyrophosphate 78.4 14 0.0003 37.7 9.1 96 179-288 145-248 (675)
222 PLN02225 1-deoxy-D-xylulose-5- 77.8 12 0.00027 40.4 9.2 109 168-288 427-538 (701)
223 COG0674 PorA Pyruvate:ferredox 77.5 22 0.00048 35.4 10.4 109 174-294 58-169 (365)
224 COG0021 TktA Transketolase [Ca 77.5 9.1 0.0002 40.7 7.9 77 209-289 441-519 (663)
225 PRK11892 pyruvate dehydrogenas 77.3 15 0.00032 37.9 9.4 97 176-287 202-309 (464)
226 PF09851 SHOCT: Short C-termin 77.2 4 8.7E-05 25.8 3.3 27 319-346 3-29 (31)
227 PRK12754 transketolase; Review 76.0 18 0.00039 39.0 9.9 110 169-288 407-518 (663)
228 PRK12753 transketolase; Review 75.3 23 0.0005 38.1 10.5 111 169-289 407-519 (663)
229 PLN02573 pyruvate decarboxylas 75.2 19 0.00042 37.9 9.9 105 177-290 68-181 (578)
230 PLN02582 1-deoxy-D-xylulose-5- 75.2 18 0.00039 39.1 9.7 109 168-288 402-513 (677)
231 PLN02683 pyruvate dehydrogenas 74.9 32 0.00069 34.1 10.8 98 176-288 87-195 (356)
232 PLN02790 transketolase 73.0 29 0.00062 37.4 10.6 110 169-288 397-509 (654)
233 COG3958 Transketolase, C-termi 73.0 20 0.00042 34.8 8.3 109 168-288 53-165 (312)
234 COG1154 Dxs Deoxyxylulose-5-ph 70.6 27 0.00057 37.1 9.2 104 176-295 371-478 (627)
235 PRK12315 1-deoxy-D-xylulose-5- 70.5 26 0.00055 37.1 9.4 108 168-288 324-434 (581)
236 PRK05444 1-deoxy-D-xylulose-5- 70.3 44 0.00096 35.3 11.2 109 168-288 325-436 (580)
237 PRK05899 transketolase; Review 67.4 47 0.001 35.3 10.7 107 169-288 372-483 (624)
238 PLN02980 2-oxoglutarate decarb 65.8 22 0.00047 42.5 8.4 104 177-289 353-465 (1655)
239 COG4032 Predicted thiamine-pyr 63.9 22 0.00048 30.9 5.9 104 175-288 54-161 (172)
240 PRK09212 pyruvate dehydrogenas 61.6 53 0.0012 32.1 9.1 66 220-292 110-176 (327)
241 PF01380 SIS: SIS domain SIS d 56.1 40 0.00086 27.2 6.2 39 191-231 53-91 (131)
242 TIGR03393 indolpyr_decarb indo 54.7 54 0.0012 34.1 8.3 47 176-229 52-98 (539)
243 smart00861 Transket_pyr Transk 53.5 1.4E+02 0.0031 25.5 9.7 107 169-288 54-164 (168)
244 PTZ00182 3-methyl-2-oxobutanat 52.8 1.1E+02 0.0023 30.4 9.6 98 176-287 95-202 (355)
245 KOG1145 Mitochondrial translat 46.5 1.3E+02 0.0028 32.0 9.2 126 164-297 204-344 (683)
246 PF05014 Nuc_deoxyrib_tr: Nucl 44.3 42 0.00092 27.0 4.5 39 193-232 63-101 (113)
247 PRK07449 2-succinyl-5-enolpyru 42.9 1E+02 0.0023 32.1 8.3 47 177-229 61-107 (568)
248 cd05014 SIS_Kpsf KpsF-like pro 42.4 1.1E+02 0.0024 24.6 6.9 40 190-231 46-85 (128)
249 TIGR02176 pyruv_ox_red pyruvat 41.1 1.9E+02 0.0042 33.4 10.5 110 176-297 64-175 (1165)
250 cd08323 CARD_APAF1 Caspase act 41.0 34 0.00075 26.9 3.3 25 321-345 16-40 (86)
251 PRK13683 hypothetical protein; 38.0 56 0.0012 25.8 4.0 33 260-295 21-53 (87)
252 CHL00144 odpB pyruvate dehydro 37.6 2.4E+02 0.0053 27.5 9.4 32 253-287 139-171 (327)
253 cd08326 CARD_CASP9 Caspase act 37.5 42 0.00091 26.2 3.3 24 322-345 19-42 (84)
254 COG1303 Uncharacterized protei 36.9 71 0.0015 28.2 4.8 42 246-290 24-66 (179)
255 cd01460 vWA_midasin VWA_Midasi 36.8 86 0.0019 29.9 5.9 81 194-275 166-256 (266)
256 PF10415 FumaraseC_C: Fumarase 35.8 42 0.00091 24.0 2.8 20 324-343 28-47 (55)
257 KOG0369 Pyruvate carboxylase [ 34.8 84 0.0018 34.1 5.8 32 193-226 159-190 (1176)
258 cd05710 SIS_1 A subgroup of th 34.1 94 0.002 25.3 5.1 40 190-231 46-85 (120)
259 cd08327 CARD_RAIDD Caspase act 34.1 47 0.001 26.5 3.1 26 320-345 22-47 (94)
260 PF07615 Ykof: YKOF-related Fa 32.6 1.3E+02 0.0028 23.2 5.3 36 257-293 41-77 (81)
261 PRK10886 DnaA initiator-associ 31.9 1.7E+02 0.0038 26.4 6.9 41 189-231 107-147 (196)
262 cd05009 SIS_GlmS_GlmD_2 SIS (S 31.8 1.3E+02 0.0027 24.9 5.7 39 191-230 61-99 (153)
263 TIGR01204 bioW 6-carboxyhexano 30.9 1.8E+02 0.0038 27.3 6.8 72 208-287 150-232 (232)
264 cd05017 SIS_PGI_PMI_1 The memb 30.6 1.1E+02 0.0023 24.9 4.8 39 190-230 42-80 (119)
265 cd08330 CARD_ASC_NALP1 Caspase 30.3 68 0.0015 24.8 3.4 26 320-345 16-41 (82)
266 cd08332 CARD_CASP2 Caspase act 29.9 68 0.0015 25.2 3.4 25 321-345 22-46 (90)
267 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.7 1.2E+02 0.0027 24.2 5.1 39 190-230 45-83 (126)
268 PLN02522 ATP citrate (pro-S)-l 28.6 3E+02 0.0064 29.6 8.8 86 190-280 220-319 (608)
269 TIGR00441 gmhA phosphoheptose 28.4 1.1E+02 0.0024 26.1 4.8 40 190-231 78-117 (154)
270 cd05007 SIS_Etherase N-acetylm 27.7 1.1E+02 0.0024 28.7 5.1 40 190-231 117-156 (257)
271 cd08329 CARD_BIRC2_BIRC3 Caspa 27.5 76 0.0016 25.2 3.3 27 319-345 23-49 (94)
272 PRK00414 gmhA phosphoheptose i 27.2 1.9E+02 0.0041 25.8 6.2 41 189-231 109-149 (192)
273 PRK13936 phosphoheptose isomer 26.5 1.3E+02 0.0028 27.0 5.1 41 189-231 109-149 (197)
274 PRK01322 6-carboxyhexanoate--C 26.3 2.8E+02 0.0061 26.1 7.3 74 208-289 157-241 (242)
275 COG5381 Uncharacterized protei 26.0 1.8E+02 0.004 25.4 5.5 62 269-332 70-135 (184)
276 cd01671 CARD Caspase activatio 25.7 92 0.002 23.1 3.4 27 319-345 13-39 (80)
277 cd08325 CARD_CASP1-like Caspas 25.7 96 0.0021 24.0 3.5 28 318-345 15-42 (83)
278 PRK13938 phosphoheptose isomer 25.7 2E+02 0.0043 25.9 6.1 42 188-231 110-151 (196)
279 PF02639 DUF188: Uncharacteriz 25.4 49 0.0011 28.1 1.9 23 211-233 1-23 (130)
280 smart00114 CARD Caspase recrui 25.1 67 0.0014 24.7 2.6 23 323-345 24-46 (88)
281 cd08785 CARD_CARD9-like Caspas 25.1 88 0.0019 24.6 3.2 24 322-345 19-42 (86)
282 PRK11658 UDP-4-amino-4-deoxy-L 25.0 4.4E+02 0.0095 25.9 9.0 61 56-119 9-78 (379)
283 COG0498 ThrC Threonine synthas 24.3 2.7E+02 0.0058 28.3 7.3 69 192-276 127-195 (411)
284 COG0362 Gnd 6-phosphogluconate 24.1 3.2E+02 0.007 28.0 7.6 112 75-204 56-178 (473)
285 PF00619 CARD: Caspase recruit 23.1 1.1E+02 0.0025 22.9 3.5 24 321-344 18-41 (85)
286 PRK13761 hypothetical protein; 23.1 2.4E+02 0.0051 26.5 6.0 44 253-314 68-112 (248)
287 PF03744 BioW: 6-carboxyhexano 22.6 2.7E+02 0.0059 26.2 6.4 72 208-287 157-239 (239)
288 cd01451 vWA_Magnesium_chelatas 22.5 2.5E+02 0.0055 24.2 6.1 34 193-226 99-138 (178)
289 cd01452 VWA_26S_proteasome_sub 22.0 3.3E+02 0.0072 24.4 6.8 33 194-226 109-142 (187)
290 cd00198 vWFA Von Willebrand fa 21.1 3.5E+02 0.0076 21.4 6.4 37 191-227 100-138 (161)
291 PF02006 DUF137: Protein of un 21.1 2.2E+02 0.0047 25.5 5.1 51 254-332 6-57 (178)
292 PRK06702 O-acetylhomoserine am 20.9 1.9E+02 0.0041 29.5 5.5 45 73-120 62-106 (432)
293 cd01450 vWFA_subfamily_ECM Von 20.9 4.4E+02 0.0095 21.3 7.0 39 191-229 102-141 (161)
294 PF02211 NHase_beta: Nitrile h 20.1 1.3E+02 0.0028 28.0 3.7 27 311-343 69-95 (222)
No 1
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4e-98 Score=700.14 Aligned_cols=329 Identities=64% Similarity=1.059 Sum_probs=309.7
Q ss_pred cccccccccccCCCCCC--CCccceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019023 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (347)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~G 92 (347)
++.|+..+..+++...+ ..++++++.+ ||+.|++|+ |.....+|+|+++++|++|+++|+||..++++|++|+|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555444322222222 3555666666 999999998 8899999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccc
Q 019023 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (347)
Q Consensus 93 f~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~l 172 (347)
|||++.||||++||+.+++++.|.||++||||++.+.+|.++.++|+||+|+.+||++|+|||||++.+ +|+|++|+|
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred cchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcC
Q 019023 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (347)
Q Consensus 173 G~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~ 252 (347)
|+|+|+++|+|+|+||++++.++++++|||+.||||+||++|||++|+||+|||||||+|||+|+.++.+..++|++||.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHc
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (347)
.|||++|||+|+++|++|.++|++|+++ +||+|+|+.|||++||||+||+++||++||++++|++||||..++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 8999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhhC
Q 019023 332 DLATEKELKSVSDLCL 347 (347)
Q Consensus 332 g~~t~~e~~~i~~~~~ 347 (347)
+++||+|||+|++++|
T Consensus 328 ~late~ELKai~k~ir 343 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIR 343 (394)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999999864
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-85 Score=630.88 Aligned_cols=291 Identities=43% Similarity=0.726 Sum_probs=278.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CeEEcCCcchHHHHhcCCC
Q 019023 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (347)
Q Consensus 55 ~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~ 133 (347)
....+++++++++|+.|+++|.||+++..++++|+++||||++.||||++||++.+|+++ ||++|+||+|+++|++|+|
T Consensus 20 ~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~ 99 (358)
T COG1071 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVP 99 (358)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCC
Confidence 345799999999999999999999999999999999999999999999999999999966 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCc-eEEEEeCCcccccchHHHH
Q 019023 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEA 212 (347)
Q Consensus 134 ~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ea 212 (347)
+.++|++++|+.+|+++||+||||+++++.+|++.+|+||+|+|.|+|+|+|.|+++.+. +++|++|||+++||+|||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999555 9999999999999999999
Q ss_pred HHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 213 ln~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
||+|+.|+||+||||+||+|+||++...++..+.++.+| ||+|+++|||||+.+|++++++|++++|+ +||+|||+.
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999999999999999998877676666677564 89999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 290 t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|||+.|||++||++.||+++|+++|+ ++|||.++|++|++.|++|++++++|++++
T Consensus 260 tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~ 315 (358)
T COG1071 260 TYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEA 315 (358)
T ss_pred EeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 599999999999999999999999999986
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=1.8e-79 Score=599.88 Aligned_cols=294 Identities=85% Similarity=1.390 Sum_probs=284.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCC
Q 019023 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (347)
Q Consensus 53 ~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (347)
|.....+|+++++++|+.|+++|.||+++.++|++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 21 ~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~ 100 (362)
T PLN02269 21 PSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGG 100 (362)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCC
Confidence 33345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHH
Q 019023 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (347)
Q Consensus 133 ~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ea 212 (347)
++.++|+|++|+.+|+++|||||||+++++.||++.++++|+++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+
T Consensus 101 ~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 101 TVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 213 ln~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
||+|+.|+||+||||+||+|+++++.+++...++++++|+++|+++|||+|+++|+++++.|++++|++||+|||+.|||
T Consensus 181 ln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR 260 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYR 260 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999998888888889999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 293 ~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
++|||++|++.+||+++|++.|++++|||.+|+++|+++|++|++++++|++++
T Consensus 261 ~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~ 314 (362)
T PLN02269 261 YHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEI 314 (362)
T ss_pred CCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999878999999999986799999999999999999999999999876
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=1.1e-74 Score=563.73 Aligned_cols=292 Identities=38% Similarity=0.696 Sum_probs=278.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCC
Q 019023 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (347)
Q Consensus 53 ~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (347)
+.+...+|+|+++++|+.|+++|.||+++.+++++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCC-------CCceEEEEeCCcccc
Q 019023 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (347)
Q Consensus 133 ~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (347)
++.++|+|++|+.+|+++|||||||+++++.++++.+|+||.++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999887 589999999999999
Q ss_pred cchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhcc-CC
Q 019023 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (347)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (347)
+|++||+||+|++|+||+||||+||+|+++++...+...+++++++ ||+++++|||+|+.+|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998876666677888864 99999999999999999999999999999 89
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|+|||+.|||+.||+++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|++++
T Consensus 251 P~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~ 312 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREV 312 (341)
T ss_pred CEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 699999999999999999999999999876
No 5
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2e-73 Score=567.54 Aligned_cols=292 Identities=40% Similarity=0.734 Sum_probs=279.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCC
Q 019023 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (347)
Q Consensus 53 ~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (347)
|...+.+|+|+++++|++|+++|.||+++.++|++|++.||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCC-------CCceEEEEeCCcccc
Q 019023 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (347)
Q Consensus 133 ~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (347)
++.++|+|++|+.+|+++|+|||||+++++.++++.+++||.++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999885 478999999999999
Q ss_pred cchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CC
Q 019023 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (347)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (347)
+|+|||+||+|++|+||+||||+||+|+++++...+...++++++ +||+|+++|||+|+.+|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999987777677788876 499999999999999999999999999999 99
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|+|||+.|||++||+++|++ .||+++|++.|+ .+|||.+|+++|+++|++|++++++|++++
T Consensus 317 P~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~ 378 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKI 378 (433)
T ss_pred CEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 699999999999999999999999999876
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.6e-73 Score=550.69 Aligned_cols=284 Identities=52% Similarity=0.912 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHHHHHHH
Q 019023 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (347)
Q Consensus 61 ~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~~e 140 (347)
+|+++++|+.|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcC
Q 019023 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (347)
Q Consensus 141 l~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~ 220 (347)
++|+++|+++||+||||+.+++.|+++.+|+||+++|.|+|+|+|.|+++++++|||++|||++++|.++|+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCcccccccccccCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 221 LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
||+||||+||+|+++++.......++|++++ +|+|+++|||+|+.+|++++++|++++|+ ++|+|||+.|||.+||+
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999877766678888864 99999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 298 ~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|++++
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~ 287 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEV 287 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99987 599999999998 699999999999999999999999999875
No 7
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.1e-71 Score=533.06 Aligned_cols=279 Identities=44% Similarity=0.750 Sum_probs=269.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCC
Q 019023 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (347)
Q Consensus 67 ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~ 146 (347)
+|+.|+++|.||+++.+++++|++.||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEE
Q 019023 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (347)
Q Consensus 147 g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~v 226 (347)
|+++|++||||++.++.+|++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++|+||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCC
Q 019023 227 CENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (347)
Q Consensus 227 v~NN~~~~~~~~~~~~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~ 303 (347)
|+||+|+++++.+.....+++++++ +|+++++|||+|+++|++++++|++++|+ ++|+|||+.|||.+|||++||+.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 9999999998877666677888764 99999999999999999999999999998 89999999999999999999988
Q ss_pred CCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 304 ~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++|++++
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~ 282 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEV 282 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999997 699999999999999999999999999876
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=4.2e-70 Score=523.54 Aligned_cols=276 Identities=39% Similarity=0.637 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCC
Q 019023 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (347)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~g~~ 149 (347)
+|+++|+||+.+..+|..+++.||+|++.||||+++|+..+|+++|+++++||||+++|++|+++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 57777888888777787777889999999999999999999999999999999999999999999999999999996555
Q ss_pred CCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec
Q 019023 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (347)
Q Consensus 150 ~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N 229 (347)
+|+. ++|+..++.+|++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 5554 555667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 019023 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (347)
Q Consensus 230 N~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr 306 (347)
|+|+|+|+...++..++++++ +||+|+++|||+|+.+|++++++|++++|+ +||+|||+.|||.+|||++|++..||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 999999999888877777775 599999999999999999999999999999 99999999999999999999999999
Q ss_pred CHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+++|++.|++.+|||.+|+++|+++|++|++++++|++++
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~ 280 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEI 280 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999888889999999999999999999999999876
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=7.4e-68 Score=516.21 Aligned_cols=280 Identities=29% Similarity=0.496 Sum_probs=264.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHH
Q 019023 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (347)
Q Consensus 56 ~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~ 135 (347)
.+.+|+++++++|++|+++|.||+++.++|++|++ ||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 35689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHH
Q 019023 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (347)
Q Consensus 136 ~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~ 215 (347)
++|+|++|+.+|.. ..++.|+++.+++||.++|.|+|+|+|.|+.+++++|||++|||++++|.++|+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999876531 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 019023 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (347)
Q Consensus 216 Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (347)
|++|+||+||||+||+|+++++.......++|+++ +||+++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 99999999999999999998876666667888876 499999999999999999999999999998 999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 293 ~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+.||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|++++
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~ 300 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEA 300 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999988899999999998 599999999999999999999999999876
No 10
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-61 Score=449.90 Aligned_cols=294 Identities=29% Similarity=0.438 Sum_probs=279.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcC
Q 019023 52 APSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRG 131 (347)
Q Consensus 52 ~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G 131 (347)
.++..+.++++..++||++|.+...||.-+-+-.+||+| +||..+.|.|++-+|.+++|.++|.|++.||..|.+|+||
T Consensus 76 ~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRg 154 (432)
T KOG1182|consen 76 DKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRG 154 (432)
T ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcC
Confidence 356789999999999999999999999988888899998 7999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCC-ceEEEEeCCcccccchHH
Q 019023 132 GTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLF 210 (347)
Q Consensus 132 ~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~-~~vv~~~GDGa~~~G~~~ 210 (347)
.++++++.+++|+.....+||++++|+++.+.||+..++++..|+|.|+|+|+|.|+.+++ +++||++|||++++|.+|
T Consensus 155 ftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~H 234 (432)
T KOG1182|consen 155 FTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAH 234 (432)
T ss_pred ccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999977665 899999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEE
Q 019023 211 EALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILE 287 (347)
Q Consensus 211 Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (347)
.++|+|+....|+||+|-||+|+|+||.+.+.....++.+| |||..++|||||+++||.|+++|.+++.+ ++|+|||
T Consensus 235 A~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliE 314 (432)
T KOG1182|consen 235 AAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIE 314 (432)
T ss_pred hhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhh
Confidence 99999999999999999999999999999888777666654 99999999999999999999999999988 8999999
Q ss_pred EEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 288 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 288 ~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+.|||...||.|||.+.||+.+||+.|.+.++||.+||+++.++|+|+|+...++++++
T Consensus 315 amtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~ 373 (432)
T KOG1182|consen 315 AMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNI 373 (432)
T ss_pred hhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888887765
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.3e-59 Score=500.70 Aligned_cols=291 Identities=20% Similarity=0.256 Sum_probs=263.6
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHh------cCCCCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEA------GITKKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~------~l~~~D~i 117 (347)
.|...++|.+.. .+|+++++++|+.|+++|.||+++..+|..+++. ++.|||++++|+.. +++++|++
T Consensus 173 ~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~gl~~li~~a~~lg~~D~v 246 (924)
T PRK09404 173 RWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF----SLEGGESLIPMLDEIIRRAGKLGVKEIV 246 (924)
T ss_pred HHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----cccchhhHHHHHHHHHHHHHhCCCCCEE
Confidence 699999996434 9999999999999999999999999999988764 47999999999988 66689999
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCC-------CCCCC----------CCCCCcCCcCCCCCcccCcccccchhH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFYKKDSGFYGGHGIVGAQIP 177 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~-------~g~~~----------Grggs~H~~~~~~~~~~~~g~lG~~~p 177 (347)
++ +||||+++|+ +|+|+.++|+|++|+. +|.++ |+||+||+.... +.+++|.+.|
T Consensus 247 igmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~P 321 (924)
T PRK09404 247 IGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNP 321 (924)
T ss_pred EecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccC
Confidence 99 6999999999 5999999999999987 44444 667778876542 4599999999
Q ss_pred HHHHHHHHHHhCCCC------ceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccccccCCchH
Q 019023 178 LGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~------~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
+|+|.|+|.|+++.+ .++||++||||+ +||.|+|+||+|++|++| +||||+||+||++|+...+.+.+..
T Consensus 322 va~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~ 401 (924)
T PRK09404 322 VVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYC 401 (924)
T ss_pred eehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhH
Confidence 999999999998877 799999999998 899999999999999998 9999999999999987766555555
Q ss_pred hhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHH
Q 019023 248 YKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERI 324 (347)
Q Consensus 248 ~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~ 324 (347)
+++ ++|+|+++|||+|+++|++|+++|++++|+ +||+|||+.|||++||+++|++. ||+++|++.|++++|||.+|
T Consensus 402 sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~ 480 (924)
T PRK09404 402 TDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELY 480 (924)
T ss_pred HHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHH
Confidence 554 599999999999999999999999999999 99999999999999999999985 99999999998778999999
Q ss_pred HHHHHHcCCCCHHHHHHHHhhh
Q 019023 325 RKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 325 ~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+++|+++|++|++|+++|++++
T Consensus 481 ~~~Li~~G~lt~~e~~~i~~~~ 502 (924)
T PRK09404 481 ADKLVAEGVITEEEADEMVNEY 502 (924)
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999875
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.9e-54 Score=457.06 Aligned_cols=297 Identities=19% Similarity=0.251 Sum_probs=266.3
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~------~~D~i 117 (347)
.|...++|++. ...+|+++.+++++.++.+..||.++...|...|-. +.+|.|++.+++...++ .+|++
T Consensus 172 ~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~gv~d~v 246 (929)
T TIGR00239 172 RWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVPMLKEIIRHSVNSGTRDVV 246 (929)
T ss_pred HHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 69999999766 789999999999999999999999999999865432 36899999998876554 68999
Q ss_pred EcC-CcchHHHHh--cCCCHHHHHHHHhCCCCC-CCCCCCCC-cCCcC-----------CCCCcccCcccccchhHHHHH
Q 019023 118 ITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KDSGFYGGHGIVGAQIPLGCG 181 (347)
Q Consensus 118 ~~~-yR~~~~~l~--~G~~~~~~~~el~g~~~g-~~~Grggs-~H~~~-----------~~~~~~~~~g~lG~~~p~a~G 181 (347)
+++ ||||++.|+ +|+|+.++|+|+.|+..+ .+.|+|+. +|++. .+..+.++++|++++.|+++|
T Consensus 247 ~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G 326 (929)
T TIGR00239 247 LGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIG 326 (929)
T ss_pred eccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhh
Confidence 997 999999999 999999999999998765 35588887 99985 456788999999999999999
Q ss_pred HHHHHHhCCC------CceEEEEeCCccc-ccchHHHHHHHHHHcCCCe---EEEEecCCcccccccccccCCchHhhh-
Q 019023 182 LAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHYGMGTAEWRAAKSPSYYKR- 250 (347)
Q Consensus 182 ~A~A~k~~~~------~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPv---i~vv~NN~~~~~~~~~~~~~~~d~~~~- 250 (347)
.|+|.|+++. +.++||++||||+ +||.|+|+||+|++|++|+ ||||+||+||++|+...+.+.+..+++
T Consensus 327 ~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~A 406 (929)
T TIGR00239 327 STRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLA 406 (929)
T ss_pred HHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHh
Confidence 9999998865 5789999999997 8999999999999999997 999999999999986655555555554
Q ss_pred -cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHH
Q 019023 251 -GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLI 328 (347)
Q Consensus 251 -g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L 328 (347)
+||+|+++|||+|+++|++|+++|++++|+ +||+|||+.|||++||+++|++..||+ +|++.|++++|||.+|+++|
T Consensus 407 k~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~L 485 (929)
T TIGR00239 407 KMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKL 485 (929)
T ss_pred eecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHH
Confidence 599999999999999999999999999999 999999999999999999999987887 88899987799999999999
Q ss_pred HHcCCCCHHHHHHHHhhh
Q 019023 329 LAHDLATEKELKSVSDLC 346 (347)
Q Consensus 329 ~~~g~~t~~e~~~i~~~~ 346 (347)
+++|++|++++++|++++
T Consensus 486 i~~Gv~te~e~~~i~~~~ 503 (929)
T TIGR00239 486 VSEGVATEEDVTEMVNLY 503 (929)
T ss_pred HHcCCCCHHHHHHHHHHH
Confidence 999999999999999875
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1.1e-50 Score=379.77 Aligned_cols=229 Identities=23% Similarity=0.286 Sum_probs=205.3
Q ss_pred HHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCC------CCeEEcC-CcchHHHHh--cCCCHHHHHHHHhCCCC-
Q 019023 77 MEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD- 146 (347)
Q Consensus 77 ~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~------~D~i~~~-yR~~~~~l~--~G~~~~~~~~el~g~~~- 146 (347)
||+++...|...+. + ..+|+|++++++...+++ +|+++++ ||||++.|+ +|+|+.++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 57888888875432 2 379999999999999987 7999997 999999999 99999999999999877
Q ss_pred --CCCCCCCCCcCCcCCC-----------CCcccCcccccchhHHHHHHHHHHHhCC-----CCceEEEEeCCccc-ccc
Q 019023 147 --GCSHGKGGSMHFYKKD-----------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGAA-NQG 207 (347)
Q Consensus 147 --g~~~Grggs~H~~~~~-----------~~~~~~~g~lG~~~p~a~G~A~A~k~~~-----~~~~vv~~~GDGa~-~~G 207 (347)
+.+.|++.++|++.+. .++++++++||+++|+|+|+|+|.|+++ .+.++||++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5566777899998765 5678999999999999999999999997 47899999999996 799
Q ss_pred hHHHHHHHHHHcCCC---eEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-C
Q 019023 208 QLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-N 281 (347)
Q Consensus 208 ~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~ 281 (347)
.|+|+||+|++|++| +||||+||+|+++|+.+.+.+.+..+++ +||+|+++|||+|+++|++++++|++++|+ +
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999998877766666665 499999999999999999999999999999 9
Q ss_pred CCEEEEEEEecCCCCCCCCCCCCCCCHHH
Q 019023 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (347)
Q Consensus 282 gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e 310 (347)
||+|||++|||++||+++|+++ |++|.+
T Consensus 237 gp~lIe~~tYR~~GHse~D~p~-~t~p~m 264 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEPS-FTQPLM 264 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCcc-ccCCCc
Confidence 9999999999999999999985 777653
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.2e-36 Score=315.31 Aligned_cols=294 Identities=21% Similarity=0.261 Sum_probs=247.7
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~------~~D~i 117 (347)
.|.+.++|.| ....|+++-+.++.++..+..||.++...|..+|- | +.+|-|.+.+.+...|. -+.++
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evv 550 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVV 550 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEE
Confidence 5999999964 57789999999999999999999999999985543 2 46899999887776665 35678
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CCCCCC-CcCCcCCC-----------CCcccCcccccchhHHHHH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SHGKGG-SMHFYKKD-----------SGFYGGHGIVGAQIPLGCG 181 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~-~~Grgg-s~H~~~~~-----------~~~~~~~g~lG~~~p~a~G 181 (347)
|+ .|||+.+.|+ .|++..++|+|+-|+-+.. ..|.|. .+|++... ..+..+++|+.+.-|+.-|
T Consensus 551 igm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleG 630 (1228)
T PRK12270 551 IGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEG 630 (1228)
T ss_pred ecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhh
Confidence 88 7999999998 5999999999999986643 344443 36776421 1345678999999999999
Q ss_pred HHHHHHhCCC------CceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccc--ccc-CCchHh
Q 019023 182 LAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEW--RAA-KSPSYY 248 (347)
Q Consensus 182 ~A~A~k~~~~------~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~--~~~-~~~d~~ 248 (347)
++.|.|..-+ ....|+++||++| +||+++|+||+|.+|++| +||||.||++||+|... +++ -.+|++
T Consensus 631 ivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~a 710 (1228)
T PRK12270 631 IVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVA 710 (1228)
T ss_pred hhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHH
Confidence 9999875421 3478999999997 899999999999999999 99999999999999866 333 245666
Q ss_pred hhcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHH
Q 019023 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (347)
Q Consensus 249 ~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~ 327 (347)
+ ++++|+++|||+|+++|..+++.|++|+++ ++|+|||+.|||++||++.|||+ +.++.+|+.+.+.+.--+.|++.
T Consensus 711 k-~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 711 K-MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred h-hcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 5 899999999999999999999999999999 99999999999999999999986 78888888877555566899999
Q ss_pred HHHcCCCCHHHHHHHHhh
Q 019023 328 ILAHDLATEKELKSVSDL 345 (347)
Q Consensus 328 L~~~g~~t~~e~~~i~~~ 345 (347)
|+.+|.+|+||.+++.+.
T Consensus 789 Ligrgdit~ee~e~~l~d 806 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRD 806 (1228)
T ss_pred HhhcCCCCHHHHHHHHHH
Confidence 999999999999988654
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.6e-36 Score=311.77 Aligned_cols=232 Identities=20% Similarity=0.203 Sum_probs=195.3
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEE--cCCcc
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYRD 123 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~--~~yR~ 123 (347)
...++.|.+...|+.++|..+-. .+|.+- ++..+++.||++++.|+-.+.++++..++ |.|+|+ ++||+
T Consensus 3 l~~~~~p~d~~~l~~~~l~~l~~---~ir~~~-----~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~ 74 (581)
T PRK12315 3 LEKINSPADLKKLSLDELEQLAS---EIRTAL-----LEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQS 74 (581)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHH-----HHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCch
Confidence 34667788889999998888764 566653 34456778999999999777766665554 899999 89999
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcc
Q 019023 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA 203 (347)
Q Consensus 124 ~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa 203 (347)
|+|.|++|.++..++++++|+.+|++++++ |.|.. ...|++|+++|+|+|+|+|.|+++.+.+|||++|||+
T Consensus 75 ~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~ 146 (581)
T PRK12315 75 YPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGS 146 (581)
T ss_pred HHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchh
Confidence 999999999999999999999999999887 44432 2678999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHcCCCeEEEEecCCccccccccc---------ccCCchHhh--hcCCcceEEe-cCCCHHHHHHHH
Q 019023 204 ANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYK--RGDYVPGLKV-DGMDALAVKQAC 271 (347)
Q Consensus 204 ~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~---------~~~~~d~~~--~g~gipg~~V-DG~D~~av~~a~ 271 (347)
+++|++|||||+|+.|++|+||||+||+|+++++... .....+... .++|++++.| ||||+.++++++
T Consensus 147 ~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~ 226 (581)
T PRK12315 147 LSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAF 226 (581)
T ss_pred hhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHH
Confidence 9999999999999999999999999999999876641 111222222 4689999988 999999999999
Q ss_pred HHHHHHhccCCCEEEEEEEecCCCCC
Q 019023 272 KFAKEHALKNGPMILEMDTYRYHGHS 297 (347)
Q Consensus 272 ~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (347)
++|++ .+||++||++|+|++|..
T Consensus 227 ~~a~~---~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 227 KEVKD---IDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHHh---CCCCEEEEEEeecCCCCC
Confidence 98754 289999999999999975
No 16
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=1e-29 Score=265.60 Aligned_cols=294 Identities=19% Similarity=0.198 Sum_probs=247.4
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~------~~D~i 117 (347)
.|...++|+ ..+.+++|+.+.+++.+..+..||.++...|...|- | +.+|-|+..++|...++ .++++
T Consensus 159 ~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~G~~~vv 232 (906)
T COG0567 159 RWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR--F--SLEGGESLIPMLDELIDRAGKQGVKEVV 232 (906)
T ss_pred HHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--c--cccchhhHHHHHHHHHHHHHhcCcceEE
Confidence 699999998 778999999999999999999999999998885443 2 36899999998877664 57899
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCcCC----------CCCcccCcccccchhHHHHHHH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYKK----------DSGFYGGHGIVGAQIPLGCGLA 183 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~~~Grgg-s~H~~~~----------~~~~~~~~g~lG~~~p~a~G~A 183 (347)
++ .|||+.+.|+ .|+|+..+|.|+.|...... ..|. .+|++.. ...+..+++|+....|+..|.+
T Consensus 233 iGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~-~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~v 311 (906)
T COG0567 233 IGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPD-LSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSV 311 (906)
T ss_pred ecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCC-cccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcch
Confidence 99 7999999998 79999999999998653211 1111 2455421 1134567899999999999999
Q ss_pred HHHHhCCCC-----ceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccc--cccC-CchHhhhc
Q 019023 184 FAQKYSKDE-----TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEW--RAAK-SPSYYKRG 251 (347)
Q Consensus 184 ~A~k~~~~~-----~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~--~~~~-~~d~~~~g 251 (347)
.|.+....+ ...+.++||.++ +||.+.|.||+...-+.- .|+||.||+.|++|... ++++ ++|.++ .
T Consensus 312 Ra~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAK-m 390 (906)
T COG0567 312 RAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAK-M 390 (906)
T ss_pred HhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhh-c
Confidence 998865322 456899999998 799999999999877664 79999999999988732 3332 456654 6
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHH
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILA 330 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~ 330 (347)
.++|.++|+|.||+||..+.+.|.+++.. +++++|++.|||.+||++.|+++ ++.+..++.++++..+.+.+.+.|+.
T Consensus 391 ~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~ 469 (906)
T COG0567 391 IEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIA 469 (906)
T ss_pred cCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHh
Confidence 88999999999999999999999999988 99999999999999999999985 89999999999888899999999999
Q ss_pred cCCCCHHHHHHHHhhh
Q 019023 331 HDLATEKELKSVSDLC 346 (347)
Q Consensus 331 ~g~~t~~e~~~i~~~~ 346 (347)
+|++|+++++.+.++.
T Consensus 470 ~gvis~~~~~~~~~~~ 485 (906)
T COG0567 470 EGVISEEEADELVNDY 485 (906)
T ss_pred hccccHHHHHHHHHHH
Confidence 9999999999998865
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=256.08 Aligned_cols=295 Identities=19% Similarity=0.286 Sum_probs=246.6
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~------~~D~i 117 (347)
.|+..++|.| ....+|.|+..-+|..+.+.-.||+++...+..-|-.| .+|.|.+..||...++ .+++|
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheE
Confidence 6999999975 67899999999999999999999999999988655434 5899999999987665 56889
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCcC----CC--------CCcccCcccccchhHHHHH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYK----KD--------SGFYGGHGIVGAQIPLGCG 181 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~~~Grgg-s~H~~~----~~--------~~~~~~~g~lG~~~p~a~G 181 (347)
++ .|||+.+.|+ --.|+.++|.|+-|.+. ..-|.|. .+|++. +. ..+..+++++.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 98 6999999998 36799999999988433 2224443 356552 11 2356789999999999999
Q ss_pred HHHHHHhC-----CCCceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccc--cccCCc-hHhh
Q 019023 182 LAFAQKYS-----KDETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEW--RAAKSP-SYYK 249 (347)
Q Consensus 182 ~A~A~k~~-----~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~--~~~~~~-d~~~ 249 (347)
-..|.++- +.+...|.++||+|| .||.++|++.+..+-+.- .|+||.||+.|++|... ++++.+ |.+
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDva- 464 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVA- 464 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHH-
Confidence 99998864 234578999999998 799999999887554443 79999999999987543 455443 443
Q ss_pred hcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHH
Q 019023 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLI 328 (347)
Q Consensus 250 ~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L 328 (347)
+..+.|.++||++|++||.-+++-|.+|+.. ++.++|+++|||.+||++.|.|. |+.|.+|+.++++...+..|.+.|
T Consensus 465 r~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekL 543 (1017)
T KOG0450|consen 465 RVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKL 543 (1017)
T ss_pred HHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHH
Confidence 5688999999999999999999999999888 99999999999999999999985 999999999998888899999999
Q ss_pred HHcCCCCHHHHHHHHhhh
Q 019023 329 LAHDLATEKELKSVSDLC 346 (347)
Q Consensus 329 ~~~g~~t~~e~~~i~~~~ 346 (347)
+++|.+|++|++++.+.+
T Consensus 544 l~egtvs~~evd~~~~k~ 561 (1017)
T KOG0450|consen 544 LSEGTVSQQEVDEEIKKY 561 (1017)
T ss_pred HhcCcccHHHHHHHHHHH
Confidence 999999999999987753
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.4e-28 Score=243.43 Aligned_cols=288 Identities=18% Similarity=0.227 Sum_probs=235.2
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCChhHHHHHHHHhcC------CCCCe
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI------TKKDS 116 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~-~~~~Gf~~~~~GqEa~~vg~~~~l------~~~D~ 116 (347)
.|...++|. -...++.+||+.++-+.|+.+..||.++...|.. |+.. ..|.|.+..-....| +.+|+
T Consensus 140 ~W~a~nFE~-l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG-----gEGAESM~aFF~eLl~~sa~~~ie~v 213 (913)
T KOG0451|consen 140 EWLARNFET-LDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG-----GEGAESMLAFFWELLRDSAQANIEHV 213 (913)
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc-----cccHHHHHHHHHHHHHHHHhcCcceE
Confidence 688888875 3557899999999999999999999999998876 4443 478888754333333 35799
Q ss_pred EEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCC------------------CCCCCCcCCcCCCCCcccCcccccch
Q 019023 117 IIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCS------------------HGKGGSMHFYKKDSGFYGGHGIVGAQ 175 (347)
Q Consensus 117 i~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~~------------------~Grggs~H~~~~~~~~~~~~g~lG~~ 175 (347)
||+ .|||+...|+ ..+++..+|+++-|..+.+. +|.++.+|. .++++++++.+.
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhv-----tMlpNPSHLEAv 288 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHV-----TMLPNPSHLEAV 288 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEE-----EecCChhhhhcc
Confidence 998 6999999997 79999999999999876432 122223332 357889999999
Q ss_pred hHHHHHHHHHHHhCC--------------CCceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccc
Q 019023 176 IPLGCGLAFAQKYSK--------------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTA 237 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~--------------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~ 237 (347)
.|+|+|-+.+.+... +....+.++|||+| .||.++|++|++-.-... .+++|.||+.|++++
T Consensus 289 NPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp 368 (913)
T KOG0451|consen 289 NPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTP 368 (913)
T ss_pred CchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCc
Confidence 999999999987642 11257889999998 799999999998654333 589999999999998
Q ss_pred cccccC---CchHhhhcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 019023 238 EWRAAK---SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (347)
Q Consensus 238 ~~~~~~---~~d~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~ 313 (347)
.++..+ ..|+++ .++.|.++|||.|+++|.+|.+.|.+|.|+ .+.++|++.|||.+||++.|+|+ |++|-+|+.
T Consensus 369 ~~rGRSs~ycsDiaK-~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~ 446 (913)
T KOG0451|consen 369 GDRGRSSAYCSDIAK-SIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKE 446 (913)
T ss_pred ccccccchhhhHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHH
Confidence 775432 345553 578999999999999999999999999999 99999999999999999999985 999999999
Q ss_pred HHhCCChH-HHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 314 VRQERDPI-ERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 314 ~~~~~DPi-~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
++ .|..+ ..|.++|++.|++|++++++++.+
T Consensus 447 v~-aReSvPdlya~~L~~eg~~tee~vkE~~~~ 478 (913)
T KOG0451|consen 447 VE-ARESVPDLYAQQLAKEGVLTEEKVKEMRDE 478 (913)
T ss_pred HH-hhhcccHHHHHHHHhcccccHHHHHHHHHH
Confidence 98 57766 558999999999999999999875
No 19
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.93 E-value=4.3e-25 Score=230.53 Aligned_cols=231 Identities=24% Similarity=0.251 Sum_probs=171.4
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCcch
Q 019023 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDH 124 (347)
Q Consensus 48 ~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~ 124 (347)
.+|++|.+...++.++|.++- ..+|.+-..+.. +. .|+.-++.|.--+.+++...++ +.|.++. .|.++
T Consensus 2 ~~i~~p~dl~~l~~~~l~~la---~~iR~~~i~~~~--~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y 73 (617)
T TIGR00204 2 SLINSPQELRLLSIDELEKLC---DELRRYLLESVS--AS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAY 73 (617)
T ss_pred CCCCCHHHHhhCCHHHHHHHH---HHHHHHHHHHHh--cc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHH
Confidence 467788889999999887765 356665544432 22 3555567888888888888888 7788665 69998
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcc-cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcc
Q 019023 125 CTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA 203 (347)
Q Consensus 125 ~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~-~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa 203 (347)
++.+.+|. .+-|..+ .+.. | -+.|....+.++. .++|++|+++++|+|+|+|.|+++.+.+++|++|||+
T Consensus 74 ~~~~~~G~--~~~l~~~-r~~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~ 144 (617)
T TIGR00204 74 PHKLLTGR--REKFSTL-RQKK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGA 144 (617)
T ss_pred HHHHHhCc--HHHhcch-hhcC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcc
Confidence 89888886 2222221 1111 1 1223322222222 4789999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccC------------------------C---------------
Q 019023 204 ANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK------------------------S--------------- 244 (347)
Q Consensus 204 ~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~------------------------~--------------- 244 (347)
+++|++|||+|+|+.|+||+|+||+||+++++++....+. .
T Consensus 145 ~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (617)
T TIGR00204 145 ITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESM 224 (617)
T ss_pred cccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999998876541100 0
Q ss_pred -------chHhhhcCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 019023 245 -------PSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 245 -------~d~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (347)
..|.++||.+.+ .|||||+.++.++++.+++. ++|++|+++|.|++|.+..
T Consensus 225 k~~~~~~~~f~~~G~~~~~-~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 225 KGLVVPGTFFEELGFNYIG-PVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hhccCccchHHHcCCcEEc-ccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 114445555533 89999999999999876642 7899999999999998754
No 20
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.93 E-value=2.7e-24 Score=194.65 Aligned_cols=169 Identities=25% Similarity=0.256 Sum_probs=125.0
Q ss_pred CCCeEEc--CCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC-CCcccCcccccchhHHHHHHHHHHHhC
Q 019023 113 KKDSIIT--AYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS 189 (347)
Q Consensus 113 ~~D~i~~--~yR~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~a~G~A~A~k~~ 189 (347)
+.|.++- .|.+.+++...|. .+-|.++. +..+ -..|....+ .++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~-~~~~------~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLR-QYGG------LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhh-cCCC------CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 5687654 5766665555665 22222221 1111 112221111 244568999999999999999999999
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcceEEecCCCHHHHHH
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQ 269 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg~~VDG~D~~av~~ 269 (347)
+++++|+|++|||++++|++||++++|+.+++|+|+||+||+|+++++.+. ....|...||++.. .|||+|+.++.+
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~~~~~~a~G~~~~~-~vdG~d~~~l~~ 171 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--PGNLFEELGFRYIG-PVDGHNIEALIK 171 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--HHHHHHhcCCCccc-eECCCCHHHHHH
Confidence 989999999999999999999999999999999999999999998876541 11223334555543 589999999999
Q ss_pred HHHHHHHHhccCCCEEEEEEEecCCCC
Q 019023 270 ACKFAKEHALKNGPMILEMDTYRYHGH 296 (347)
Q Consensus 270 a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (347)
++++|++ .++|++|+++|++++|.
T Consensus 172 a~~~a~~---~~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 172 VLKEVKD---LKGPVLLHVVTKKGKGY 195 (195)
T ss_pred HHHHHHh---CCCCEEEEEEEecccCc
Confidence 9988764 38999999999998873
No 21
>PRK12754 transketolase; Reviewed
Probab=99.92 E-value=6.2e-24 Score=222.51 Aligned_cols=151 Identities=23% Similarity=0.233 Sum_probs=126.1
Q ss_pred CCcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCC
Q 019023 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (347)
Q Consensus 163 ~~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~ 231 (347)
.++...+|++|+|++.|+|+|+|.|+.+ .+.+|+|++|||++++|++|||+++|+.|+|| +|+||+||+
T Consensus 107 pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~ 186 (663)
T PRK12754 107 AGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNG 186 (663)
T ss_pred CCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 3788889999999999999999999875 36899999999999999999999999999999 679999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC--CCCCCCCC
Q 019023 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM--SDPGSTYR 306 (347)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~--~D~~~~Yr 306 (347)
++++++.+... ..++.++ ++|+++++ |||||+.++.+|+++|... .++|++|+++|++++|.+. ..+..++.
T Consensus 187 ~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~ 263 (663)
T PRK12754 187 ISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGA 263 (663)
T ss_pred CccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeeccCccccCCCccccCC
Confidence 99998877665 4566664 58999998 8999999999999888752 3889999999999999873 22223333
Q ss_pred --CHHHHHHHHh
Q 019023 307 --TRDEISGVRQ 316 (347)
Q Consensus 307 --~~~e~~~~~~ 316 (347)
+++|++..++
T Consensus 264 ~l~~~~~~~~~~ 275 (663)
T PRK12754 264 PLGDAEIALTRE 275 (663)
T ss_pred CCCHHHHHHHHH
Confidence 4566666543
No 22
>PTZ00089 transketolase; Provisional
Probab=99.92 E-value=1.3e-23 Score=221.09 Aligned_cols=215 Identities=19% Similarity=0.200 Sum_probs=158.2
Q ss_pred ccccCCChhHHHHHHHHh-cCC---------CCCeEEc--CCcc---hHHHHhcCC--CHHHHHHHHhCCCCCCCCCCCC
Q 019023 92 GFCHLYDGQEAVAIGMEA-GIT---------KKDSIIT--AYRD---HCTFLGRGG--TLLEVFSELMGRKDGCSHGKGG 154 (347)
Q Consensus 92 Gf~~~~~GqEa~~vg~~~-~l~---------~~D~i~~--~yR~---~~~~l~~G~--~~~~~~~el~g~~~g~~~Grgg 154 (347)
|+..++.|.-.+.+++.. .|+ +.|.++. .|.+ +++....|. +.++ +.. +....+.+
T Consensus 27 GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~~-l~~-fr~~~s~~----- 99 (661)
T PTZ00089 27 GHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDLSMED-LKN-FRQLGSRT----- 99 (661)
T ss_pred CCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCHHH-HHh-cCCCCCCC-----
Confidence 444456777777776764 544 3587554 5777 556666775 4443 332 22221111
Q ss_pred CcCCcC-CCCCcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcccccchHHHHHHHHHHcCCC-
Q 019023 155 SMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP- 222 (347)
Q Consensus 155 s~H~~~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP- 222 (347)
+.|.-. ...++..++|++|++++.|+|+|+|.|+.+. +..|+|++|||++++|++|||+|+|+.|+||
T Consensus 100 ~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n 179 (661)
T PTZ00089 100 PGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK 179 (661)
T ss_pred CCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence 122211 1125667799999999999999999998653 7789999999999999999999999999998
Q ss_pred eEEEEecCCcccccccccccCCchHhhh--cCCcceEEe-cCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 019023 223 AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 223 vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~V-DG~-D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (347)
+|+||+||+++++.+..... ..++.++ ++|++++.| ||| |+.++.+|+++|++. .++|++|+++|+|++||.+
T Consensus 180 Li~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~ 256 (661)
T PTZ00089 180 LIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLIIVKTTIGYGSSK 256 (661)
T ss_pred EEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEEeeecCCCCc
Confidence 68999999999988876543 2344443 588888999 999 999999999998863 2789999999999999876
Q ss_pred CCCCC---CCCCHHHHHHHHh
Q 019023 299 SDPGS---TYRTRDEISGVRQ 316 (347)
Q Consensus 299 ~D~~~---~Yr~~~e~~~~~~ 316 (347)
.++.. .+.+++|++++++
T Consensus 257 e~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 257 AGTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred CCCCCccCCCCCHHHHHHHHH
Confidence 66532 3567788887764
No 23
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.92 E-value=1.7e-23 Score=219.83 Aligned_cols=149 Identities=24% Similarity=0.299 Sum_probs=123.2
Q ss_pred CCcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCC
Q 019023 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (347)
Q Consensus 163 ~~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~ 231 (347)
.++...+|++|+++|.|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3777889999999999999999999863 36789999999999999999999999999999 678899999
Q ss_pred cccccccccccCCchHhhh--cCCcceEEe-cCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC--CCCCCC
Q 019023 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS--DPGSTY 305 (347)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~--D~~~~Y 305 (347)
|+++++.+... ..++.++ ++|++++.| ||||+.++.+|++.|.+ . ++|++|+++|+|++|.+.. ....++
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e~~~~~H~ 258 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKAGTHGVHG 258 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccCCCCcccC
Confidence 99999877665 4556554 589999999 99999999999987754 3 5899999999999998732 222233
Q ss_pred C--CHHHHHHHH
Q 019023 306 R--TRDEISGVR 315 (347)
Q Consensus 306 r--~~~e~~~~~ 315 (347)
. +++++++.+
T Consensus 259 ~~~~~~~~~~~~ 270 (653)
T TIGR00232 259 APLGDEDVKLTK 270 (653)
T ss_pred CCCCHHHHHHHH
Confidence 3 455665554
No 24
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.91 E-value=8.2e-23 Score=192.02 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=119.2
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccccccccc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA 242 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~ 242 (347)
++...+|++|+++|.|+|+|+|.++.+++++|+|++|||++++|.+||++++|+.++|| +++|++||+|++..+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66678899999999999999999999999999999999999999999999999999998 77888999999877654444
Q ss_pred CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 019023 243 KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (347)
Q Consensus 243 ~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D 300 (347)
...++.++ ++|++++.|||||+.++.+++++|.+. .++|++|+++|.|+.||+...
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 55677764 589999999999999999999998862 279999999999999999443
No 25
>PRK05899 transketolase; Reviewed
Probab=99.91 E-value=2.8e-23 Score=217.67 Aligned_cols=229 Identities=19% Similarity=0.208 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHh-cCC---------CCCeEEc--CCcc---hHHHHhcCC--CH
Q 019023 72 ATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEA-GIT---------KKDSIIT--AYRD---HCTFLGRGG--TL 134 (347)
Q Consensus 72 ~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~-~l~---------~~D~i~~--~yR~---~~~~l~~G~--~~ 134 (347)
..+|..-..+..... .|+...+.|.-.+.+++.. .|+ ..|.++. .|-+ ++++..+|. +.
T Consensus 13 ~~iR~~~~~~~~~~~----~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~ 88 (624)
T PRK05899 13 NAIRVLSIDAVQKAN----SGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLAGYDLSI 88 (624)
T ss_pred HHHHHHHHHHHHHcC----CCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHcCCCCCH
Confidence 446665444332222 2444445665555555553 454 3587654 5666 455566776 33
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcCC-CCCcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcc
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYKK-DSGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGA 203 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~~-~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa 203 (347)
++ +..+ .+..+. .+.|.... -.++...+|++|+++|.|+|+|+|.++.+. +++|+|++|||+
T Consensus 89 ~~-l~~~-~~~~~~-----~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~ 161 (624)
T PRK05899 89 DD-LKNF-RQLGSK-----TPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGD 161 (624)
T ss_pred HH-HHHh-cCCCCC-----CCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcch
Confidence 33 2222 111110 11232211 135666799999999999999999998776 789999999999
Q ss_pred cccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc
Q 019023 204 ANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK 280 (347)
Q Consensus 204 ~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~ 280 (347)
+++|.+||++++|+.++|| +|+|++||+|+++.+.... ..+++.++ ++|++++.|||||+.++.+|+++|.+.
T Consensus 162 ~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~--- 237 (624)
T PRK05899 162 LMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS--- 237 (624)
T ss_pred hhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc---
Confidence 9999999999999999999 6788999999998766532 34577664 589999999999999999999988753
Q ss_pred CCCEEEEEEEecCCCCCCCCCCCCCC----CHHHHHHHH
Q 019023 281 NGPMILEMDTYRYHGHSMSDPGSTYR----TRDEISGVR 315 (347)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~D~~~~Yr----~~~e~~~~~ 315 (347)
++|++|+++|+|++||+..++...|+ ++++++.+.
T Consensus 238 ~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~~ 276 (624)
T PRK05899 238 TKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAK 276 (624)
T ss_pred CCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHHH
Confidence 79999999999999998665543454 356766654
No 26
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=1.7e-23 Score=217.59 Aligned_cols=233 Identities=21% Similarity=0.196 Sum_probs=168.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCcc
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (347)
...+++|.+...++.++|.++- ..+|..-..+... . .|+.-.+.|.--+.+++...++ +.|.++- .|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~a---~~iR~~~~~~~~~-~----~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQLA---DEIREFLIDVVSK-T----GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHHH---HHHHHHHHHHHHh-c----CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 5567778888999988877664 3466655444432 2 3544456676666666766665 5687664 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC-CCcccCcccccchhHHHHHHHHHHHhC-CCCceEEEEeCC
Q 019023 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALYGD 201 (347)
Q Consensus 124 ~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~a~G~A~A~k~~-~~~~~vv~~~GD 201 (347)
++++...|. . +-|.. +.+..+ . +.|....+ .++..++|++|+++|+|+|+|+|.|++ +++++|+|++||
T Consensus 79 y~~~~~~g~-~-~~l~~-~~~~~s----~--~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GD 149 (580)
T PRK05444 79 YPHKILTGR-R-DRFDT-LRQKGG----L--SGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGD 149 (580)
T ss_pred HHHHHHhCc-H-HHhcC-cccCCC----C--CCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcc
Confidence 777777775 1 11111 111111 1 12433322 367778999999999999999999998 588999999999
Q ss_pred cccccchHHHHHHHHHHcCCCeEEEEecCCccccccccccc---CCchHhh--hcCCcceE-EecCCCHHHHHHHHHHHH
Q 019023 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAK 275 (347)
Q Consensus 202 Ga~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~---~~~d~~~--~g~gipg~-~VDG~D~~av~~a~~~A~ 275 (347)
|++++|++||++++|+.+++|+|+|++||+|+++++..... ...+..+ +++|++++ .|||+|+.++.+++++|+
T Consensus 150 G~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~ 229 (580)
T PRK05444 150 GALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK 229 (580)
T ss_pred cccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877654321 1122222 36788888 589999999999998776
Q ss_pred HHhccCCCEEEEEEEecCCCCCCC
Q 019023 276 EHALKNGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 276 ~~ar~~gP~lIe~~t~R~~GHs~~ 299 (347)
+ .++|++|+++|.|++|.+..
T Consensus 230 ~---~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 230 D---LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred h---CCCCEEEEEEecCCcCCChh
Confidence 4 28999999999999998743
No 27
>PRK12753 transketolase; Reviewed
Probab=99.91 E-value=3.2e-23 Score=217.89 Aligned_cols=133 Identities=23% Similarity=0.244 Sum_probs=116.3
Q ss_pred CCcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCC
Q 019023 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (347)
Q Consensus 163 ~~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~ 231 (347)
.++...+|++|++++.|+|+|+|.|+.+. +.+|+|++|||++++|++|||+|+|+.|+|| +|+||+||+
T Consensus 107 pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~ 186 (663)
T PRK12753 107 PGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNG 186 (663)
T ss_pred CCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 36778899999999999999999998752 6799999999999999999999999999998 788999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 019023 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (347)
++++++.+... ..++.++ ++|++++. |||||+.++++|+++|++. .++|++|+++|++++|++.
T Consensus 187 ~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~ 253 (663)
T PRK12753 187 ISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--KDKPSLIICRTIIGFGSPN 253 (663)
T ss_pred CcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--CCCeEEEEEEEeecCCCCc
Confidence 99998877544 3455543 58888894 9999999999999998762 3889999999999999984
No 28
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.4e-23 Score=187.77 Aligned_cols=213 Identities=18% Similarity=0.180 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHH-HhcCC---------CCCeEEcC--CcchHHHH---hc
Q 019023 66 SFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGM-EAGIT---------KKDSIITA--YRDHCTFL---GR 130 (347)
Q Consensus 66 ~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~-~~~l~---------~~D~i~~~--yR~~~~~l---~~ 130 (347)
++-+....+|+--.++.....+ |+++.+...--+.+.+ ...++ ..|+++-+ |=..+.+- .+
T Consensus 9 ~L~~~A~~iRr~~v~m~~~~~~----GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 9 ELERIAREIRRNIVRMLANAGS----GHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred HHHHHHHHHHHHHHHHhcccCC----CCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 4444456788766554433332 4555566555544433 33332 35776653 43333222 15
Q ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC----CCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccccc
Q 019023 131 GGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD----SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ 206 (347)
Q Consensus 131 G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~----~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~ 206 (347)
|+=+++-+. .+++ -+|-..++|+ .++..++|++|+++++|+|+|++.|+++.+..|+++.|||++++
T Consensus 85 G~~p~eeL~-~~~~--------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~E 155 (243)
T COG3959 85 GYFPEEELE-TFRR--------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDE 155 (243)
T ss_pred CCCCHHHHH-Hhcc--------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCccccc
Confidence 765555444 2333 2332223333 37777899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhh--hcCCcceEEecCCCHHHHHHHHHHHHHHhccCCC
Q 019023 207 GQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGP 283 (347)
Q Consensus 207 G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP 283 (347)
|++|||+.+|+.++|. +|.||+-|..+....++...+..++.+ ++||...++|||||+.++.+|+..+..- +++|
T Consensus 156 G~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~rP 233 (243)
T COG3959 156 GQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGRP 233 (243)
T ss_pred ccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCCC
Confidence 9999999999999998 677888888876655554443334433 2567777999999999999999877641 1599
Q ss_pred EEEEEEEecC
Q 019023 284 MILEMDTYRY 293 (347)
Q Consensus 284 ~lIe~~t~R~ 293 (347)
.+|.++|.+.
T Consensus 234 ~~IIa~Tvkg 243 (243)
T COG3959 234 TVIIAKTVKG 243 (243)
T ss_pred eEEEEecccC
Confidence 9999999763
No 29
>PLN02790 transketolase
Probab=99.91 E-value=1.9e-22 Score=211.99 Aligned_cols=197 Identities=21% Similarity=0.213 Sum_probs=146.3
Q ss_pred ccccCCChhHHHHHHHHhc---CC-------CCCeEEc--CCcc---hHHHHhcCC---CHHHHHHHHhCCCCCCCCCCC
Q 019023 92 GFCHLYDGQEAVAIGMEAG---IT-------KKDSIIT--AYRD---HCTFLGRGG---TLLEVFSELMGRKDGCSHGKG 153 (347)
Q Consensus 92 Gf~~~~~GqEa~~vg~~~~---l~-------~~D~i~~--~yR~---~~~~l~~G~---~~~~~~~el~g~~~g~~~Grg 153 (347)
|+.-.+.|.--+.+++... ++ +.|.++. .|.+ ++++...|. +.+++ .. +.+..+.+.
T Consensus 15 GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l-~~-~r~~~s~~~--- 89 (654)
T PLN02790 15 GHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDL-KQ-FRQWGSRTP--- 89 (654)
T ss_pred CcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHH-HH-hccCCCCCC---
Confidence 4444466766666666544 33 4687665 5777 556666776 44442 22 222222221
Q ss_pred CCcCCcC-CCCCcccCcccccchhHHHHHHHHHHHh-----CCC-----CceEEEEeCCcccccchHHHHHHHHHHcCCC
Q 019023 154 GSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP 222 (347)
Q Consensus 154 gs~H~~~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~-----~~~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP 222 (347)
.|.-. ...++..++|++|++++.|+|+|+|.|+ +++ +.+|+|++|||++++|++|||+|+|+.|+||
T Consensus 90 --ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~ 167 (654)
T PLN02790 90 --GHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLG 167 (654)
T ss_pred --CCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCC
Confidence 23211 1137788999999999999999999995 343 6789999999999999999999999999998
Q ss_pred -eEEEEecCCcccccccccccCCchHhhh--cCCcceEEecC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 019023 223 -AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (347)
Q Consensus 223 -vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG--~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (347)
+|+||+||+|+++++.+.... .++.++ ++|++++.||| ||+.++++|++.|++. .++|++|+++|++++|.+
T Consensus 168 nli~i~d~N~~~i~~~~~~~~~-~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~ 244 (654)
T PLN02790 168 KLIVLYDDNHISIDGDTEIAFT-EDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSP 244 (654)
T ss_pred CEEEEEecCCccccCCcccccc-hhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCc
Confidence 788999999999988775442 344443 58999999988 8999999999988762 389999999999999988
Q ss_pred C
Q 019023 298 M 298 (347)
Q Consensus 298 ~ 298 (347)
.
T Consensus 245 ~ 245 (654)
T PLN02790 245 N 245 (654)
T ss_pred c
Confidence 4
No 30
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.90 E-value=1.8e-22 Score=211.42 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=168.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCcc
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (347)
...++.|.+...++.++|.++-. .+|+.-..+.. +. .|+..++.|.-.+.+++...|+ +.|.++. .|.+
T Consensus 34 l~~i~~p~dlk~l~~~~l~~la~---~iR~~ii~~~~--~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~a 105 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQLAD---ELRSDVIFNVS--KT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQS 105 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHHHH---HHHHHHHHHHH--hc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcchH
Confidence 66777888889999999887754 46665444332 32 3565667888888888887776 7898776 7999
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC-CCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCc
Q 019023 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (347)
Q Consensus 124 ~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDG 202 (347)
+++++..|.. +-|..+ .+..+ -+.|....+ .+...++|++|+++++|+|+|+|.++++.++.|||++|||
T Consensus 106 y~~~~l~gr~--~~l~~~-r~~g~------l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 106 YPHKILTGRR--DKMHTM-RQTNG------LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred HHHHHHHccH--HHhccc-ccCCC------cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 9999888861 112111 11111 122322111 2445679999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHcCCCeEEEEecCCc-cc--------cccccccc-------CC----------------------
Q 019023 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRAA-------KS---------------------- 244 (347)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~--------~~~~~~~~-------~~---------------------- 244 (347)
++++|++|||+|+|+.|++|+|+||+||+. ++ +......+ ..
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999997 33 11110000 00
Q ss_pred -------------------chHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 019023 245 -------------------PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 245 -------------------~d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (347)
.-|.. +|+.++ .|||||+.++.++++.+++. . ++|++|+++|.+++|....
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe~--~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFEE--LGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHHH--cCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 01222 455544 89999999999999988863 2 5999999999999999854
No 31
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.90 E-value=3.9e-22 Score=207.40 Aligned_cols=236 Identities=17% Similarity=0.145 Sum_probs=168.2
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCc
Q 019023 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (347)
Q Consensus 46 ~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR 122 (347)
....++.|.+...++.++|.++-. .+|+.-..+. ++. .|+.-++.|.-.+.+++...|+ |.|.|+. .|.
T Consensus 66 ~l~~i~~p~~~k~l~~~~L~~la~---eiR~~ii~~~--~~~---~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHq 137 (641)
T PLN02234 66 LLDTINHPMHMKNLSIKELKVLSD---ELRSDVIFNV--SKT---GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQ 137 (641)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHHHH--hhc---CCCccccchHHHHHHHHHHhcCCCCCeEEEecchh
Confidence 355666777777888888877654 4665443333 222 4666678898888888988777 7898776 689
Q ss_pred chHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC-CCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCC
Q 019023 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201 (347)
Q Consensus 123 ~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~-~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GD 201 (347)
++++++..|.-- -|.. +.+.. | -+.|....+ .+...++|++|+++++|+|+|+|.++++.++.|||++||
T Consensus 138 aya~~~ltgr~~--~l~t-~r~~g----g--l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGD 208 (641)
T PLN02234 138 SYPHKILTGRRG--KMKT-IRQTN----G--LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGD 208 (641)
T ss_pred HHHHHHHHhhhh--hhcc-cccCC----C--cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEcc
Confidence 888888776521 1111 11111 1 122322211 255668999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHcCCCeEEEEecCCccc------cccccc---c----------------cCCchHhhhcCCcce
Q 019023 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGM------GTAEWR---A----------------AKSPSYYKRGDYVPG 256 (347)
Q Consensus 202 Ga~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~------~~~~~~---~----------------~~~~d~~~~g~gipg 256 (347)
|++++|++|||+|.|+..+-++|+|+++|+... ..+.+. . .....|. ++|+..
T Consensus 209 Gel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe--~fG~~~ 286 (641)
T PLN02234 209 GAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFE--ELGFHY 286 (641)
T ss_pred chhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHH--HcCCEE
Confidence 999999999999999977767999999998832 111110 0 0012233 356666
Q ss_pred E-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 019023 257 L-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (347)
Q Consensus 257 ~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~ 301 (347)
+ .|||||+.++.++++.+.+. +.++|++|+++|.++.|.+....
T Consensus 287 ~g~vDGHd~~~l~~al~~~k~~-~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 287 VGPVDGHNIDDLVSILETLKST-KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred EeeECCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEecCCCcchhhc
Confidence 7 89999999999999987642 11589999999999999996544
No 32
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.89 E-value=2.3e-22 Score=210.77 Aligned_cols=231 Identities=19% Similarity=0.201 Sum_probs=167.5
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCc
Q 019023 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (347)
Q Consensus 46 ~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR 122 (347)
...++++|.+...|+.++|.++- ..+|.+-..+.. +. .|+.-++.|.--+.+++...++ |.|.++. .|.
T Consensus 8 ~l~~i~~p~dl~~l~~~~l~~~a---~~iR~~ii~~~~--~~---~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~ 79 (641)
T PRK12571 8 LLDRIKGPADLRALSDAELEQLA---DELRAEVISAVS--ET---GGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQ 79 (641)
T ss_pred hhhhcCCHHHHHhCCHHHHHHHH---HHHHHHHHHHHH--Hh---CCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchH
Confidence 36677789999999998887664 456665444332 22 2555567888778888877776 6788665 688
Q ss_pred chHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCC--CCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeC
Q 019023 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD--SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (347)
Q Consensus 123 ~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~--~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~G 200 (347)
++++++..|. .+-|..+ .+..+ . +.|....+ .+. ...|+-+.++++|+|+|+|.++.++++.|+|++|
T Consensus 80 ~Y~~~~l~g~--~~~l~~~-r~~~~----l--~g~p~~~e~~~~~-~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~G 149 (641)
T PRK12571 80 CYPHKILTGR--RDRFRTL-RQKGG----L--SGFTKRSESEYDP-FGAAHSSTSISAALGFAKARALGQPDGDVVAVIG 149 (641)
T ss_pred HHHHHHHhCC--HHHHhhh-hhCCC----c--CCCCCCCcCCCCC-cccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 8888888885 2222222 11111 1 12322211 111 2345557778999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccc--------cC-----------------------------
Q 019023 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA--------AK----------------------------- 243 (347)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~--------~~----------------------------- 243 (347)
||++++|++||++++|+.|++|+|+|++||+|+++.+.... ..
T Consensus 150 DG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (641)
T PRK12571 150 DGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAR 229 (641)
T ss_pred CchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999987766311 00
Q ss_pred ---------CchHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 019023 244 ---------SPSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 244 ---------~~d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (347)
...|. ++|+..+ .|||||+.++.+|++.|.+. .++|++|+++|.+++|.+.
T Consensus 230 ~~~~~~~~~~~~f~--a~G~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~ 290 (641)
T PRK12571 230 ELVTGMIGGGTLFE--ELGFTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAP 290 (641)
T ss_pred HhhhhccchhhHHH--HcCCEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcch
Confidence 11222 3666668 79999999999999988752 2889999999999999874
No 33
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.89 E-value=6.3e-23 Score=190.52 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=148.6
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCcch
Q 019023 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDH 124 (347)
Q Consensus 48 ~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~ 124 (347)
.+|+.|.+...+|.+||..+.. .+|.+-.. .-.+..|++.++.|.....+|++..|+ |.|.|+. .|+++
T Consensus 2 ~~I~~p~dlk~ls~~eL~~La~---eiR~~ii~-----~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y 73 (270)
T PF13292_consen 2 DKINSPEDLKKLSIEELEQLAQ---EIREFIIE-----TVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAY 73 (270)
T ss_dssp GG-SSHHHHTTS-GGGHHHHHH---HHHHHHHH-----HCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-H
T ss_pred CCCCCHHHHHcCCHHHHHHHHH---HHHHHHHH-----HHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccc
Confidence 4577788889999999998875 56765432 223446888889999999999999998 8999887 89999
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCC--CCCCC-C--cCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEe
Q 019023 125 CTFLGRGGTLLEVFSELMGRKDGCS--HGKGG-S--MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALY 199 (347)
Q Consensus 125 ~~~l~~G~~~~~~~~el~g~~~g~~--~Grgg-s--~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~ 199 (347)
.|.|.. ||.+.+. +-.+| | ......++..| +.|+-++++++|.|+|.|.++.+++..||+++
T Consensus 74 ~HKiLT------------GR~~~f~TlRq~gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVI 140 (270)
T PF13292_consen 74 VHKILT------------GRRDRFHTLRQYGGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLKGEDRKVVAVI 140 (270)
T ss_dssp HHHHCT------------TTCCCGGGTTSTTS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHHTS---EEEEE
T ss_pred hhhhcc------------CcHHHhchhhhcCCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 999954 4444322 11222 1 11122234444 68999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHcCCCeEEEEecCCccccccccccc-------CCc--------------------hHhh---
Q 019023 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-------KSP--------------------SYYK--- 249 (347)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~-------~~~--------------------d~~~--- 249 (347)
||||+.-|+.+||||.|+..+-++|+|++||+++|+......+ ..+ .+.+
T Consensus 141 GDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~ 220 (270)
T PF13292_consen 141 GDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIK 220 (270)
T ss_dssp ETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-----------------------------------
T ss_pred CCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999998876532100 000 0000
Q ss_pred ---hc--------CCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 250 ---RG--------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 250 ---~g--------~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
++ .|+.++ .|||||..++.++++.+++. +||+||++.|
T Consensus 221 ~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 221 ESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp --------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 01 243333 78999999999999887753 9999999987
No 34
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.88 E-value=1.2e-20 Score=184.63 Aligned_cols=228 Identities=17% Similarity=0.086 Sum_probs=156.6
Q ss_pred ccccCCChhHHHHHHH-HhcCCC------CCeEEc-CCcc---hHHHHhcCC-CHHHHHHHHhCCCCCCCCCCCCCcCCc
Q 019023 92 GFCHLYDGQEAVAIGM-EAGITK------KDSIIT-AYRD---HCTFLGRGG-TLLEVFSELMGRKDGCSHGKGGSMHFY 159 (347)
Q Consensus 92 Gf~~~~~GqEa~~vg~-~~~l~~------~D~i~~-~yR~---~~~~l~~G~-~~~~~~~el~g~~~g~~~Grggs~H~~ 159 (347)
|+.-.+.+.--+.+++ ...|+. .|.|++ .|.+ ++.....|. +.++ |..+. +..+. +.|..
T Consensus 31 GH~G~slS~adI~~aLy~~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~ed-L~~fr-~~gs~------p~l~g 102 (386)
T cd02017 31 GHIATFASAATLYEVGFNHFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQ-LDNFR-QEVGG------GGLSS 102 (386)
T ss_pred CCCCcchhHHHHHHHHHHHhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHH-HHhhc-cCCCC------CCCCC
Confidence 4444455655555555 356774 788665 4544 233334675 3333 33322 11110 12222
Q ss_pred CC-----CCCcccCcccccchhHHHHHHHHHHHh-------CCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEE
Q 019023 160 KK-----DSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILV 226 (347)
Q Consensus 160 ~~-----~~~~~~~~g~lG~~~p~a~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~v 226 (347)
.| ..++..++|++|.++++|+|+|+|.|+ .+.+..|+|++|||++++|++|||+++|+.++|. +|+|
T Consensus 103 ~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivI 182 (386)
T cd02017 103 YPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFV 182 (386)
T ss_pred CCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEE
Confidence 22 124778899999999999999999998 5567899999999999999999999999999996 7888
Q ss_pred EecCCcccccccccc-cCCchHhhh--cCCcceEEec-------------------------------------------
Q 019023 227 CENNHYGMGTAEWRA-AKSPSYYKR--GDYVPGLKVD------------------------------------------- 260 (347)
Q Consensus 227 v~NN~~~~~~~~~~~-~~~~d~~~~--g~gipg~~VD------------------------------------------- 260 (347)
+++|++++..+++.. ....++.++ ++|...+.||
T Consensus 183 vD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~ 262 (386)
T cd02017 183 VNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREH 262 (386)
T ss_pred EECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHH
Confidence 999999887766552 223344442 5666678897
Q ss_pred --------------------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC---CCCCCCC---CCH
Q 019023 261 --------------------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM---SDPGSTY---RTR 308 (347)
Q Consensus 261 --------------------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~---~D~~~~Y---r~~ 308 (347)
|||+.++.+|+.++... +++|++|.++|.+++|.+. .+...++ -++
T Consensus 263 l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~ 340 (386)
T cd02017 263 FFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTE 340 (386)
T ss_pred hccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCH
Confidence 99999999999988752 3789999999999999872 2333333 367
Q ss_pred HHHHHHHhCCChHHHHHHHHHH
Q 019023 309 DEISGVRQERDPIERIRKLILA 330 (347)
Q Consensus 309 ~e~~~~~~~~DPi~~~~~~L~~ 330 (347)
+|+++.++.-+ ++++...+.+
T Consensus 341 ~e~~~~~~~lg-~~~~~~~~~~ 361 (386)
T cd02017 341 DELKALRDRFG-IPVSDEQLEE 361 (386)
T ss_pred HHHHHHHHHcC-CCCCHHHhcc
Confidence 77777764433 5556555554
No 35
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.88 E-value=1.7e-21 Score=196.93 Aligned_cols=231 Identities=19% Similarity=0.245 Sum_probs=173.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCcc
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (347)
..++++|.+...||.+||..+.. .+|.+-.. ... +..|+..++.|.....+|++..++ |.|.++. +|+.
T Consensus 5 L~~i~~P~dLk~ls~~eL~~La~---EiR~~li~--~vS---~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQa 76 (627)
T COG1154 5 LDKINSPADLKKLSIEELPQLAD---EIREFLLE--VVS---ATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQA 76 (627)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhc---cCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCccc
Confidence 45677899999999999999875 46654332 222 245888889999999999999998 8998887 8999
Q ss_pred hHHHHhcCCC-HHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCc
Q 019023 124 HCTFLGRGGT-LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (347)
Q Consensus 124 ~~~~l~~G~~-~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDG 202 (347)
+.|.|..|.. -..-+++.-|- +|+++ ....++.++ ..||-++++++|+|+|.|..++++++.||+++|||
T Consensus 77 YpHKiLTGR~e~f~tlRq~~Gl-sGf~~-------r~ESe~D~f-~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDG 147 (627)
T COG1154 77 YPHKILTGRREQFDTLRQKDGL-SGFPK-------REESEHDWF-GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDG 147 (627)
T ss_pred chhHHhcCchhhcchhhhcCCC-CCCCC-------cccCCCccc-ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCc
Confidence 9999976653 11112222221 11111 112234544 68999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHH-HcCCCeEEEEecCCccccccccc---------ccC-----------------------------
Q 019023 203 AANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWR---------AAK----------------------------- 243 (347)
Q Consensus 203 a~~~G~~~Ealn~Aa-~~~LPvi~vv~NN~~~~~~~~~~---------~~~----------------------------- 243 (347)
|+.-|+.+||||.|+ ..+-|+|+|++||+++|+.+..- ...
T Consensus 148 Alt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~ 227 (627)
T COG1154 148 ALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEE 227 (627)
T ss_pred cccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999999999998 55678999999999999765431 000
Q ss_pred --------CchHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 019023 244 --------SPSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 244 --------~~d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (347)
.+-|...| +.++ .|||||+.++..+++.+++. ++|+||++.|.++.|...+
T Consensus 228 ~~K~l~~~~~lFeelG--f~YiGPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 228 SIKGLLVPGTLFEELG--FNYIGPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred hhhcccCchhhHHHhC--CeeECCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 00122223 2222 68999999999999988864 9999999999999999754
No 36
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.88 E-value=1.2e-21 Score=190.23 Aligned_cols=150 Identities=22% Similarity=0.307 Sum_probs=112.4
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~ 232 (347)
++..++|++|+|++.|+|+|+|.|+.+ -+..|+|++|||++++|++|||+.+|+.++|. +|+|+++|+.
T Consensus 105 gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~ 184 (332)
T PF00456_consen 105 GIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGI 184 (332)
T ss_dssp T-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESE
T ss_pred eeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCc
Confidence 666779999999999999999998642 35689999999999999999999999999999 7888999999
Q ss_pred ccccccccccCCchHhh--hcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC--CCCCC-
Q 019023 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP--GSTYR- 306 (347)
Q Consensus 233 ~~~~~~~~~~~~~d~~~--~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~--~~~Yr- 306 (347)
++..+.+.... .++.+ +++|...++| ||||+.++.+|++.|... +++|++|.++|.+++|.+.... ..++.
T Consensus 185 q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~ 261 (332)
T PF00456_consen 185 QIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--KGKPTVIIARTVKGKGVPFMEGTAKWHGSP 261 (332)
T ss_dssp ETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--TSS-EEEEEEE-TTTTSTTTTTSGGGTSS-
T ss_pred ccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--CCCCceeecceEEecCchhhcccchhhccC
Confidence 88766654332 23333 2566677998 999999999999998751 2899999999999999964322 23443
Q ss_pred -CHHHHHHHHh
Q 019023 307 -TRDEISGVRQ 316 (347)
Q Consensus 307 -~~~e~~~~~~ 316 (347)
++||++..++
T Consensus 262 l~~ee~~~~k~ 272 (332)
T PF00456_consen 262 LTEEEVEQAKK 272 (332)
T ss_dssp -HHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 4667777664
No 37
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.86 E-value=1.3e-20 Score=196.72 Aligned_cols=229 Identities=16% Similarity=0.155 Sum_probs=172.3
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEc--CCc
Q 019023 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYR 122 (347)
Q Consensus 46 ~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~--~yR 122 (347)
....|+.|.+...|+.+||..|-. .+|.+-.. ... .+..|++.++.|...+.+|++..|+ |.|.|+. .|+
T Consensus 78 ~L~~i~~P~dlk~L~~~eL~~La~---EiR~~li~--~v~--s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ 150 (701)
T PLN02225 78 ILDSIETPLQLKNLSVKELKLLAD---EIRTELHS--VLW--KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQ 150 (701)
T ss_pred hhhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhh--cccCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccc
Confidence 366777898999999999999875 57765432 220 1235888889999999999999998 8999887 899
Q ss_pred chHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCc
Q 019023 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (347)
Q Consensus 123 ~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDG 202 (347)
++.|.|..|..-. |. . |.. .|-.|-......++..| +.||-++++++|.|+|.|..++++++.||+++|||
T Consensus 151 ~Y~HKiLTGR~~~--f~--~-Rq~---~GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDG 221 (701)
T PLN02225 151 TYAHKVLTRRWSA--IP--S-RQK---NGISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNA 221 (701)
T ss_pred cchhhHhcCChhh--cC--c-ccc---CCcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Confidence 9999997765311 11 1 211 11112111122334555 68999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHcCCCeEEEEecCCcccccc--------cccc---------c-----------------------
Q 019023 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWRA---------A----------------------- 242 (347)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~--------~~~~---------~----------------------- 242 (347)
|+.-|+.+||||.|+..+-++|+|++||+++|+.. ..-. .
T Consensus 222 altgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~ 301 (701)
T PLN02225 222 TITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYE 301 (701)
T ss_pred chhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999998776 2100 0
Q ss_pred --------------C-C-chHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 019023 243 --------------K-S-PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (347)
Q Consensus 243 --------------~-~-~d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (347)
+ . .-|...| +.++ .|||||+.++.++++.+++. . +||+||++.|.+++
T Consensus 302 ~~~~~~~~~k~~~~~~~~~lFe~lG--~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 302 WAAKVDEYARGMVGPTGSTLFEELG--LYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHhhhccCCCccCcHHHcC--CeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0 0 1122222 2222 68999999999999999864 2 49999999999987
No 38
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.84 E-value=2.1e-20 Score=171.77 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=133.2
Q ss_pred ChhHHHHHHHHhcCCC-CCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchh
Q 019023 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (347)
Q Consensus 98 ~GqEa~~vg~~~~l~~-~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~ 176 (347)
.||++.++.....|.. .|.+++.|+.+.. .++++|+++ + ...| .++|......++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~------gl~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE------GMRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH------HHHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5899988877778887 5899999987652 125667775 2 2223 56788766678999999999999
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchH---HHHHHHHHHcCCC-eEEEEecCCcccccccccc-cCCchHhhh-
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKR- 250 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~-~~~~d~~~~- 250 (347)
+.|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. |+-|++||+|+++++.... ....+++++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 568889999999999999996 8888888888888 6678899999999988754 334566654
Q ss_pred -cCCcceEEecCCCHHHHHHHHHHHHHHhc
Q 019023 251 -GDYVPGLKVDGMDALAVKQACKFAKEHAL 279 (347)
Q Consensus 251 -g~gipg~~VDG~D~~av~~a~~~A~~~ar 279 (347)
+||++.+.|||+|+.++++++++|+++++
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998887654
No 39
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.82 E-value=5.2e-18 Score=179.17 Aligned_cols=132 Identities=23% Similarity=0.158 Sum_probs=110.2
Q ss_pred CcccCcccccchhHHHHHHHHHHHh-------CCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCcccc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~ 235 (347)
++...+|+||.+++.|+|+|++.|+ +..++.|+|++|||++++|++|||+.+|+.++|. +|+||++|...+.
T Consensus 183 ~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlD 262 (885)
T TIGR00759 183 FWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLD 262 (885)
T ss_pred CEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 3666899999999999999999997 5677899999999999999999999999999998 7799999999887
Q ss_pred cccccccC-CchHhh--hcCCcceEEe-----------------------------------------------------
Q 019023 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (347)
Q Consensus 236 ~~~~~~~~-~~d~~~--~g~gipg~~V----------------------------------------------------- 259 (347)
.++..... ..++.+ +|+|...++|
T Consensus 263 G~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~ 342 (885)
T TIGR00759 263 GPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELK 342 (885)
T ss_pred CccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 76653222 223333 2556556888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 019023 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (347)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (347)
+|||+.+|++|++.|++. +++|++|.++|.+++|.+
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 343 ALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecCCCC
Confidence 699999999999988863 368999999999999987
No 40
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.80 E-value=1.6e-17 Score=177.18 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=109.9
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCC-------CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCcccc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~-------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~ 235 (347)
++..++|+||.|++.|+|+|++.||.. .+..|+|++|||++++|++|||+.+|+.++|. +|+|+++|..++.
T Consensus 183 ~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlD 262 (889)
T TIGR03186 183 FWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLD 262 (889)
T ss_pred CeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 356689999999999999999988542 36789999999999999999999999999998 7799999999887
Q ss_pred cccccccC-CchHhh--hcCCcceEEe-----------------------------------------------------
Q 019023 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (347)
Q Consensus 236 ~~~~~~~~-~~d~~~--~g~gipg~~V----------------------------------------------------- 259 (347)
.++..... ..++.+ +++|...++|
T Consensus 263 G~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~ 342 (889)
T TIGR03186 263 GPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALA 342 (889)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHH
Confidence 76654222 233333 2566666888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 019023 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (347)
+|||+.+|++|++.|++. +++|++|.++|.+++|.+..
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG~G~~~~ 396 (889)
T TIGR03186 343 ALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKGFGMGAI 396 (889)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCcc
Confidence 699999999999999863 37899999999999997543
No 41
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.79 E-value=2.1e-18 Score=164.86 Aligned_cols=166 Identities=19% Similarity=0.144 Sum_probs=132.9
Q ss_pred CCcchHHHHhcCCCHH-HHHHHHhCCCC------CCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCC
Q 019023 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (347)
Q Consensus 120 ~yR~~~~~l~~G~~~~-~~~~el~g~~~------g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~ 192 (347)
-||||+++...|.++. .++.+.+|+++ ||+.+.+|.+|+... ++...+.++|.+.++|.|+++|.+.++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999999888 89999998877 899888888876654 66677899999999999999999887665
Q ss_pred c-eEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccccccccccc-----------------CCchHhh--hcC
Q 019023 193 T-VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------KSPSYYK--RGD 252 (347)
Q Consensus 193 ~-~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~-----------------~~~d~~~--~g~ 252 (347)
. .|++++|||++.++.+ |+|+.|+.+++|++|||+||++.+.|-.+.+. ..-|+.. .++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999988775 99999999999999999999985543222111 0113333 357
Q ss_pred CcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 253 YVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 253 gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
|++.+ +++-.|+.++.+++++|+++ +||.+|++.+.
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~sp 207 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLAP 207 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeCC
Confidence 87765 66778999999999999974 99999999853
No 42
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.77 E-value=1.2e-16 Score=170.95 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=116.7
Q ss_pred cccCcccccchhHHHHHHHHHHHh-------CCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccc
Q 019023 165 FYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT 236 (347)
Q Consensus 165 ~~~~~g~lG~~~p~a~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~ 236 (347)
+...+|+||.|++.|+|.|++.|| ...++.|+|++|||++++|++|||+.+|+.++|. +||||++|...+..
T Consensus 198 ~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG 277 (896)
T PRK13012 198 WQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDG 277 (896)
T ss_pred EecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccC
Confidence 556899999999999999999984 3456899999999999999999999999999998 77999999998777
Q ss_pred ccccccC-CchHhh--hcCCcceEEe--------------------------c---------------------------
Q 019023 237 AEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D--------------------------- 260 (347)
Q Consensus 237 ~~~~~~~-~~d~~~--~g~gipg~~V--------------------------D--------------------------- 260 (347)
++..... ..++.+ +|+|...++| |
T Consensus 278 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~ 357 (896)
T PRK13012 278 PVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAA 357 (896)
T ss_pred ccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHH
Confidence 6654222 123333 3566666888 8
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC---CCCCCCCC---CCHHHHHHHH
Q 019023 261 ----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS---MSDPGSTY---RTRDEISGVR 315 (347)
Q Consensus 261 ----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs---~~D~~~~Y---r~~~e~~~~~ 315 (347)
|||+.+|++|++.|.+. +++|++|.++|.+++|.+ +.....++ -+.+++++.+
T Consensus 358 lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r 432 (896)
T PRK13012 358 LVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFR 432 (896)
T ss_pred HhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHH
Confidence 99999999999988763 368999999999999976 22222233 2455665554
No 43
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.76 E-value=4.4e-18 Score=153.98 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=96.1
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~~------ 240 (347)
+.|+||+++|.|+|+++|. ++++|||++|||++.+. ..| |.+|+++++|+++|| +|+.|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 4689999999999999885 68899999999999984 455 999999999988776 6666887542111
Q ss_pred ----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
....+||.+. ++|+++.+|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 1234788875 5999999998 78999999999998665699999999996544
No 44
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=3.5e-17 Score=166.74 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=112.0
Q ss_pred CcccCcccccchhHHHHHHHHHHHhC-----CC-----CceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYS-----KD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~-----~~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~ 232 (347)
++...+|+||+|++.|+|+|+|.++. ++ |..++|++|||.+++|+.+||..+|+.++|. +|++.++|++
T Consensus 110 GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I 189 (663)
T COG0021 110 GVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI 189 (663)
T ss_pred CeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc
Confidence 67778999999999999999998764 22 3589999999999999999999999999998 6788899999
Q ss_pred ccccccccccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 019023 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 233 ~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (347)
+|....+..+ ..|..+| +||...+ .+||||++++.+|+++|+.- +++|++|+|+|.-++|-+.
T Consensus 190 siDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~--~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 190 SIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS--TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred eeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc--CCCCeEEEEEeeeecCCCC
Confidence 9987766655 3344443 5777778 78999999999999999862 3899999999999999776
No 45
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=1.9e-16 Score=159.83 Aligned_cols=213 Identities=21% Similarity=0.227 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCChh-HHHHHHHHhcCC---------CCCeEEc--CCcc---hHHHHhcCCCH
Q 019023 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQ-EAVAIGMEAGIT---------KKDSIIT--AYRD---HCTFLGRGGTL 134 (347)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~Gq-Ea~~vg~~~~l~---------~~D~i~~--~yR~---~~~~l~~G~~~ 134 (347)
.|..+|..+..+..--+. |.-++..|- |.+.+-....++ ..|.++. .|.+ +.+....|..-
T Consensus 13 ~~n~lri~si~~~~~a~s----ghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~ 88 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKS----GHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDR 88 (632)
T ss_pred HhhhhhhhhHHHHHhhhc----CCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCc
Confidence 466778777765554443 333334442 112221122222 2476665 4666 55555567543
Q ss_pred HHH---HHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCC-CceEEEEeCCcccccchHH
Q 019023 135 LEV---FSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLF 210 (347)
Q Consensus 135 ~~~---~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~ 210 (347)
.+- |+|+-++..| |.-..-.++..++|++|++++.|+|+|++.|+.+. +..|+|++|||+.++|++|
T Consensus 89 ~edl~~~Rq~~s~t~g---------hp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~ 159 (632)
T KOG0523|consen 89 EEDLKNFRQIGSDTPG---------HPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVW 159 (632)
T ss_pred HHHHHHHHhhCCCCCC---------CCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHH
Confidence 332 2333333222 22111124456789999999999999999999987 8999999999999999999
Q ss_pred HHHHHHHHcCCCeE-EEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 211 EALNIAALWDLPAI-LVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 211 Ealn~Aa~~~LPvi-~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
||+++|+.|+|..| +|.+||+.+++.+.+..+..+-+..| ++|+..+.|||+|++++.+++..|+.- +++|++|-
T Consensus 160 EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~ 237 (632)
T KOG0523|consen 160 EAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIK 237 (632)
T ss_pred HHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeee
Confidence 99999999999955 66688889998877665544333323 478888999999999999999998842 38999999
Q ss_pred EEEecCCCCC
Q 019023 288 MDTYRYHGHS 297 (347)
Q Consensus 288 ~~t~R~~GHs 297 (347)
++|+.+.|-.
T Consensus 238 ~~t~~g~G~~ 247 (632)
T KOG0523|consen 238 ATTFIGRGSP 247 (632)
T ss_pred eeeeeecCcc
Confidence 9999998865
No 46
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.74 E-value=2e-17 Score=146.25 Aligned_cols=113 Identities=21% Similarity=0.217 Sum_probs=90.5
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec-CCccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N-N~~~~~~~~~~----- 240 (347)
++.|+||+++|.|+|+++|. ++++|||++|||++++. .++|++|++++||+++||.| |+|++....+.
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 35689999999999999886 67899999999999974 46699999999998766655 56887653322
Q ss_pred ------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 241 ------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 241 ------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
....+||.+. ++|+++.+|+ ++.++.++++++.+. ++|+|||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 1234678775 5999999998 688999999888753 8999999976
No 47
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.72 E-value=4.6e-17 Score=147.88 Aligned_cols=120 Identities=25% Similarity=0.245 Sum_probs=94.8
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~----- 240 (347)
++.|+||+++|.|+|+++|. ++++|||+.|||++++. ..| |.+|++++||+++||.||+ |++......
T Consensus 54 ~~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~ 127 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202)
T ss_pred CCccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-HHH-HHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCc
Confidence 34699999999999999886 68899999999999985 345 9999999999887776665 786432110
Q ss_pred ---------------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 019023 241 ---------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (347)
Q Consensus 241 ---------------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (347)
....+||.+. ++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred cccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence 0013688875 5999999998 789999999999875544 89999999985543
No 48
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.71 E-value=2.5e-15 Score=160.52 Aligned_cols=130 Identities=25% Similarity=0.227 Sum_probs=107.7
Q ss_pred cccCcccccchhHHHHHHHHHHHh-------CCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccc
Q 019023 165 FYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT 236 (347)
Q Consensus 165 ~~~~~g~lG~~~p~a~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~ 236 (347)
+...+|+||.+++.|+|.|++.|| ...++.|+|++|||++++|++|||+.+|+.++|. +|+||++|...+..
T Consensus 190 ~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG 269 (891)
T PRK09405 190 WQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDG 269 (891)
T ss_pred eecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCC
Confidence 345689999999999999999994 4457899999999999999999999999999998 77999999998877
Q ss_pred ccccccC-CchHhh--hcCCcceEEe--------------------------c---------------------------
Q 019023 237 AEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D--------------------------- 260 (347)
Q Consensus 237 ~~~~~~~-~~d~~~--~g~gipg~~V--------------------------D--------------------------- 260 (347)
++..... ..++.+ +|+|...++| |
T Consensus 270 ~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~ 349 (891)
T PRK09405 270 PVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKA 349 (891)
T ss_pred ccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHH
Confidence 6653211 223333 2566666888 4
Q ss_pred ----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 019023 261 ----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (347)
Q Consensus 261 ----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (347)
|||+.+|++|++.|.+. +++|++|.++|.+++|.
T Consensus 350 lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~--~~~PtvIia~TvkG~G~ 399 (891)
T PRK09405 350 LVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH--KGQPTVILAKTIKGYGM 399 (891)
T ss_pred HHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC--CCCCEEEEEeceecCCC
Confidence 99999999999988863 37899999999999998
No 49
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.71 E-value=7e-17 Score=141.03 Aligned_cols=114 Identities=25% Similarity=0.341 Sum_probs=90.9
Q ss_pred ccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccc-----
Q 019023 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEW----- 239 (347)
Q Consensus 166 ~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~----- 239 (347)
.++.|+||.++|.|+|++++. ++++||+++|||++.+ .+++|++|+.+++|+++||.||++ ++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 456799999999999999986 4789999999999998 468899999999999988877775 5433221
Q ss_pred -----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 -----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
.....+||.+. ++|+++.+|+ ++.++.++++++.+ .++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~---~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA---AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 22234577765 5899999998 47888888888764 39999999975
No 50
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.70 E-value=8.6e-17 Score=142.67 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=89.6
Q ss_pred ccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc--------
Q 019023 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (347)
Q Consensus 170 g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~-------- 240 (347)
|.||.++|.|+|+++|. +++++||++|||+++++. ++|.+|+++++|+++||.||+ |++.+..+.
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999986 578999999999999874 569999999999998887775 887542211
Q ss_pred ---------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 241 ---------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 241 ---------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
....+||.+. ++|+++.+|++ +.++.+++++|++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA---EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 0123678775 59999999985 8899999988875 38999999964
No 51
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.68 E-value=3.4e-16 Score=139.37 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=90.9
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------- 239 (347)
+.|.||+++|.|+|+++|. +++++|+++|||+++++ +.| |.++.++++|+++||.||+ |++.+...
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 4699999999999999875 67899999999999987 666 8999999999988887775 78743211
Q ss_pred --cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 --~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ ++.++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~---~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA---ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11124578775 5999999998 68888888888775 3899999999854
No 52
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.67 E-value=3e-16 Score=140.58 Aligned_cols=114 Identities=28% Similarity=0.418 Sum_probs=89.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc------cc
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~------~~ 240 (347)
+.|.||+++|.|+|+++|. ++++||+++|||++++. +.| |.+|+++++|+++||.||+ |++.... ..
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~~e-L~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4589999999999999885 67899999999999974 444 9999999999987776665 6653321 10
Q ss_pred -----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 -----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++|+++.+|+ +..++.+++++|.+ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA---SDGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 1134688775 5999999998 57788888888775 3899999999964
No 53
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.67 E-value=8e-16 Score=137.06 Aligned_cols=116 Identities=19% Similarity=0.118 Sum_probs=89.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccccc----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA---- 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~~---- 241 (347)
...|.||.++|.|+|+++|. +++.||++.|||++.+.. +++|.+|+++++|+++||.|| .|++.......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 35799999999999999986 578899999999997632 577999999999987666555 57764322110
Q ss_pred -----cCCchHhhh--cCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 242 -----AKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 242 -----~~~~d~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
...+||.+. ++|+++.+| ++.|+.++.+++++|++ .++|+||+++.
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~---~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA---VPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 123578775 599999988 77788888888888875 38999999864
No 54
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.67 E-value=3.9e-16 Score=139.11 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=91.1
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. ++++||++.|||++.+. . ..|.+|+++++|+++|| +|++|++....+
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~-~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN-S-QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH-H-HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35689999999999999985 68899999999999874 3 45999999999987666 555688653211
Q ss_pred ---cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ---~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA---ADGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 11124588774 5999999998 79999999999986 3899999999854
No 55
>PRK06163 hypothetical protein; Provisional
Probab=99.66 E-value=1.4e-15 Score=138.40 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=98.0
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHc-CCCeEEEEecC-Ccccccccc-cccCCc
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENN-HYGMGTAEW-RAAKSP 245 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvi~vv~NN-~~~~~~~~~-~~~~~~ 245 (347)
.|.||+++|.|+|+++|. +++.|||++|||++++. . ..|.+++++ ++|+++||.|| .|++..... .....+
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ-L-GALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH-H-HHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999985 78899999999999874 3 459999877 78988777666 588632211 112346
Q ss_pred hHhhh--cCCcc-eEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 019023 246 SYYKR--GDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (347)
Q Consensus 246 d~~~~--g~gip-g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~ 313 (347)
||.+. ++|++ +.+|+ +..++..+++++++ .++|+|||+.+.+.. +.+...|++.|++.
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~~ 190 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS---GPGPSFIAVRIDDKP-----GVGTTERDPAQIRE 190 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCC-----CCCCCCCCHHHHHH
Confidence 88875 58997 67887 88899999999875 389999999986432 33344678887764
No 56
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.66 E-value=1.3e-15 Score=137.26 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=96.0
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCC-CeEEEEecCC-cccccccccccCCch
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-Pvi~vv~NN~-~~~~~~~~~~~~~~d 246 (347)
+|+||+++|.|+|+++|. +++.|||++|||++.+. .++|.+++++++ |+++||.||+ |++..........+|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999986 67899999999999863 356999999997 5776665555 776432222223468
Q ss_pred Hhhh--cCCcce-EEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 019023 247 YYKR--GDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (347)
Q Consensus 247 ~~~~--g~gipg-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~ 312 (347)
|.+. ++|+++ .+|+ ++.++.+++++|++ .++|+|||+.+-+..+ +.. ...++++.+++
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~~~~~~~-~~~--~~~~~~~~~~~ 181 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA---ADGPAFIEVKVRPGSR-SDL--GRPTTSPIENK 181 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCCC-CCC--CCCCCCHHHHH
Confidence 8875 589987 4787 89999999998875 3899999999976654 222 22355666554
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.64 E-value=3.1e-15 Score=133.61 Aligned_cols=114 Identities=23% Similarity=0.239 Sum_probs=89.1
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCC-CeE-EEEecCCccccccccccc-CCc
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAI-LVCENNHYGMGTAEWRAA-KSP 245 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-Pvi-~vv~NN~~~~~~~~~~~~-~~~ 245 (347)
.|+||+++|.|+|+++|.+ ++|||++|||++.++ ..++.+++.+++ |++ +|++||.|++........ ..+
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999862 789999999999764 245889999995 665 555777788754332222 256
Q ss_pred hHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 246 SYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 246 d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
||.+. ++|+++.+|+| ++.++.+++++++ ++|++||+.|.+..+
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~ 159 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT 159 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC
Confidence 88875 59999999987 7888888887775 789999999976554
No 58
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.64 E-value=1.8e-15 Score=137.86 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=91.2
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~~----- 240 (347)
++.|.||+++|.|+|+++|. ++++||++.|||++.++ .. +|.+|+++++|+++|| +||.|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-HS-EIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-HH-HHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 35689999999999999885 68899999999999985 34 4999999999987555 5556876432110
Q ss_pred ------------------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ------------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ------------------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
....+||.+. ++|+++.+|+ ++.++.+|+++|++ .++|+|||+.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIeV~v~~~~ 187 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA---SDRTTVIVIKTDPKS 187 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeeccc
Confidence 0123688775 5999999996 89999999999875 389999999997643
No 59
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.63 E-value=7e-16 Score=133.77 Aligned_cols=113 Identities=30% Similarity=0.466 Sum_probs=89.6
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
...|.||.++|.|+|+++|. ++++||+++|||++.+. ..| |.+|+++++|+++||.||+ |++.....
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-LQE-LATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-GGG-HHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-cch-hHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 36799999999999999984 78999999999999875 445 9999999999887775555 67643221
Q ss_pred ----cc---cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 240 ----RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 240 ----~~---~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
.. ...+||.+. ++|+++.+|+..|+.++.+++++|++ .+||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~---~~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE---SGGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH---SSSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh---CCCcEEEEc
Confidence 11 335678774 59999999986667999999999995 499999996
No 60
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.63 E-value=1.8e-15 Score=132.42 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=87.8
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHc-CCCeEEEE-ecCCcccccccccccCCch
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVC-ENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvi~vv-~NN~~~~~~~~~~~~~~~d 246 (347)
.|+||.++|.|+|+++|. + ++|||+.|||++++. ..| |.+++++ ++|+++|| +|+.|++..........+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~~e-l~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-PGV-LLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-ccH-HHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999764 344 8999998 59988777 5555776432222222578
Q ss_pred Hhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 247 ~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
|.+. ++|+++.+|+ ++.++.+++++|++ .++|++||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA---TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh---CCCCEEEEEEec
Confidence 8875 5999999886 79999999999986 389999999884
No 61
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.63 E-value=2.7e-15 Score=134.45 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=90.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeE-EEEecCCccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi-~vv~NN~~~~~~~~~~----- 240 (347)
+..|.||.++|.|+|+++|. +++.|++++|||+|.+. ++| |.+|+++++|++ +|++||.|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 35699999999999999886 57899999999999874 677 889999999976 5556667886542211
Q ss_pred -ccCCchHhhh--cCC----cceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 -AAKSPSYYKR--GDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 -~~~~~d~~~~--g~g----ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++| +++.+|+ ++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1123677775 477 7888886 79999999999987 23899999999865
No 62
>PRK05261 putative phosphoketolase; Provisional
Probab=99.62 E-value=1.1e-14 Score=153.85 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=141.6
Q ss_pred ccccccCCChhHHHHHHHHhcCCCC--CeEEcCCcchHHHH------hcC--------CCHHHH-HHHHhCCCCCCCCCC
Q 019023 90 VRGFCHLYDGQEAVAIGMEAGITKK--DSIITAYRDHCTFL------GRG--------GTLLEV-FSELMGRKDGCSHGK 152 (347)
Q Consensus 90 ~~Gf~~~~~GqEa~~vg~~~~l~~~--D~i~~~yR~~~~~l------~~G--------~~~~~~-~~el~g~~~g~~~Gr 152 (347)
..|++-.+.|+--+-+.+-..+++. |.++-.--||+... .-| ++..+. |..++-+- ++ .|
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~-pg- 124 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SF-PG- 124 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cC-CC-
Confidence 4577777788888877666666654 54443334565333 235 333331 33233211 11 11
Q ss_pred CCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchH---HHHHHHHHHcCCC-eEEEEe
Q 019023 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCE 228 (347)
Q Consensus 153 ggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vi~vv~ 228 (347)
|.+.|......|+...+|.+|++++.|+|+|+. +++.+|+|++|||++++|.+ |++.+++.-.++. ++.|+.
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 345777655568888999999999999999965 47889999999999999984 7777777777777 567778
Q ss_pred cCCccccccccccc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHh-----------cc----CCCE--EEEE
Q 019023 229 NNHYGMGTAEWRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHA-----------LK----NGPM--ILEM 288 (347)
Q Consensus 229 NN~~~~~~~~~~~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~a-----------r~----~gP~--lIe~ 288 (347)
+|+|+|+++..... ...++.++ |||++.+.|||+|+.++++++++|++.+ |. .+|. +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 99999999887543 33455553 7999999999999999999877665543 22 3788 9999
Q ss_pred EEecCCCCC
Q 019023 289 DTYRYHGHS 297 (347)
Q Consensus 289 ~t~R~~GHs 297 (347)
+|.+++|-+
T Consensus 281 rT~kG~g~p 289 (785)
T PRK05261 281 RTPKGWTGP 289 (785)
T ss_pred ECCccCCCC
Confidence 999988833
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=155.35 Aligned_cols=117 Identities=27% Similarity=0.327 Sum_probs=95.5
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccc--------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-------- 238 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~-------- 238 (347)
+.|.||+++|.|+|+++|. ++++|||++|||+|++. +.| |.+|++++||+++||.|| .|++....
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~ 478 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEP 478 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCc
Confidence 4599999999999999985 78899999999999875 555 999999999998777666 68754311
Q ss_pred -ccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 239 -WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 239 -~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
......+||.+. ++|+++.+|+ ++.++.++++++++. ++|+|||+.++|+.+
T Consensus 479 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 479 VGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred cccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 111235688875 5999999997 899999999988863 999999999999875
No 64
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.61 E-value=8.8e-15 Score=131.01 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=87.5
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcC-CCeEEEEecCC-ccccccccccc-CCc
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENNH-YGMGTAEWRAA-KSP 245 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-LPvi~vv~NN~-~~~~~~~~~~~-~~~ 245 (347)
.|.+|.++|.|+|+++|. +++|||+.|||++.++. ++|.+|+.++ +|+++||.||+ |++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 789999999999999884 67899999999999763 5599999999 59987776665 78654222111 256
Q ss_pred hHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 246 SYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 246 d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
||.+. ++|+++.+ |+ ++.++.++++ +++ .++|+|||+.+.+..
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKPGN 159 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCCCC
Confidence 88875 59999988 76 7889988886 553 389999999986443
No 65
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=5.4e-15 Score=152.90 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=94.8
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccccccC--
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~~~-- 243 (347)
++.|+||.++|.|+|+++|. +++.|||+.|||+|++. ..| |.+|+++++|+++||.||+ |++....+....
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~qE-L~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-GQE-LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc-HHH-HHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 46799999999999999886 78999999999999984 444 9999999999988887776 787654331111
Q ss_pred -------Cch-Hhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 244 -------SPS-YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 244 -------~~d-~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
.+. |.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+.+.
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~---~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA---SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCc
Confidence 112 7664 5999999999 89999999999997 39999999999865
No 66
>PRK06154 hypothetical protein; Provisional
Probab=99.59 E-value=6.8e-15 Score=152.92 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=93.4
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~------ 240 (347)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|++++||+++||.||+ |++......
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-GMD-FETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 4689999999999999986 78899999999999985 344 9999999999887776665 775432110
Q ss_pred --ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 --~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++|+++.+|+ ++.++.+++++|+++.+.++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeCh
Confidence 1113688875 5999999998 799999999999875445889999999844
No 67
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.57 E-value=8.6e-15 Score=152.81 Aligned_cols=117 Identities=26% Similarity=0.222 Sum_probs=92.6
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|+++++|+++||.|| +|++......
T Consensus 416 ~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~ 489 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-IEE-LAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDY 489 (588)
T ss_pred ccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccc
Confidence 4589999999999999886 78899999999999985 444 999999999987666555 5886432110
Q ss_pred ----cc----------CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 019023 241 ----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (347)
Q Consensus 241 ----~~----------~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (347)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++.+.+ ++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 490 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688875 5999999997 799999999999865433 899999999954
No 68
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.57 E-value=8.9e-15 Score=130.04 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=86.6
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------- 239 (347)
+.|.+|.++|.|+|+++|. +++||+++|||++.+. . .+|.+|+++++|+++||.|| .|++.....
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-H-HHHHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 3478999999999999984 5789999999999975 3 45999999999987666555 477532211
Q ss_pred --ccc---CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 --RAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 --~~~---~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
... ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA---QDGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 011 24688775 5999999998 89999999998875 38999999975
No 69
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.57 E-value=2.4e-14 Score=129.35 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=85.4
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcc-cccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-c----
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~-~---- 241 (347)
.+.||+++|.|+|+++|. ++++||++.|||+ ++++ + .+|.+|+++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~-~-~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG-G-NHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc-H-HHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 488999999999999885 7899999999999 4664 3 449999999999987776665 776542211 0
Q ss_pred -----------cCCchHhhh--cCCcceE---EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 242 -----------AKSPSYYKR--GDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 242 -----------~~~~d~~~~--g~gipg~---~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
...+||.+. ++|++++ +|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~--~~~el~~al~~al~---~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSG--DIKQLKEIIKKAIQ---HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecC--CHHHHHHHHHHHHh---cCCCEEEEEEC
Confidence 012577764 5888884 454 89999999999986 39999999975
No 70
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.57 E-value=1.2e-14 Score=151.10 Aligned_cols=115 Identities=25% Similarity=0.365 Sum_probs=92.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. ++++||+++|||+|++. +.| |.+|++++||+++||.||+ |++.....
T Consensus 419 ~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~ 492 (570)
T PRK06725 419 GGLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYEN 492 (570)
T ss_pred CCcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCC
Confidence 34599999999999999885 68899999999999864 555 9999999999988887776 66543211
Q ss_pred ----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ ++.++.++++.|++ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~id~ 546 (570)
T PRK06725 493 RLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA---HEGPVVVDFCVEE 546 (570)
T ss_pred ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11124688875 5999999996 89999999988875 3899999999854
No 71
>PRK12474 hypothetical protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=149.30 Aligned_cols=113 Identities=24% Similarity=0.252 Sum_probs=89.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc-c-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~-~----- 239 (347)
...|+||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~qE-L~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-HHH-HHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999986 78899999999999984 455 9999999999887776665 8864311 0
Q ss_pred ---c--------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 ---R--------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 ---~--------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
+ ..+.+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~---~~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA---QRGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 0 0113478875 5999999998 78899999999875 38999999964
No 72
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.56 E-value=1.5e-14 Score=150.50 Aligned_cols=117 Identities=22% Similarity=0.195 Sum_probs=94.7
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccc--------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-------- 238 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~-------- 238 (347)
+.|.||+++|.|+|+++|. ++++|||++|||+|+++...+++++|+++++|+++||.|| +|++....
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~ 503 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEG 503 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccc
Confidence 4689999999999998874 7899999999999998754457999999999998887777 58864311
Q ss_pred ---------cccc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 239 ---------WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 239 ---------~~~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
.... ..+||.+. ++|+++.+|+ ++.++.+++++|++..++ +||+|||+.+
T Consensus 504 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 504 YAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred ccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 34678775 5999999998 899999999999987666 7899999986
No 73
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.56 E-value=2.1e-14 Score=149.68 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=92.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc--------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~-------- 238 (347)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..| |.+|+++++|+++||.||+ |++....
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 4589999999999999986 67899999999999984 455 9999999999987776665 6764211
Q ss_pred -ccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 239 -WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 239 -~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
......+||.+. ++|+++.+|+ ++.++.+++++|++ .+||+|||+.+-+.
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~~ 532 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA---HPGPALVDVVTDPN 532 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 011235688875 5999999998 89999999999886 38999999998654
No 74
>PRK08266 hypothetical protein; Provisional
Probab=99.56 E-value=1.8e-14 Score=148.89 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=93.7
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
..|+||+++|.|+|++++. ++++|||++|||+|+++ .++|.+|++++||+++||.|| +|++....+.
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 4589999999999998875 78899999999999986 356999999999988777666 5886432111
Q ss_pred ----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 019023 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (347)
Q Consensus 241 ----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (347)
....+||.+. ++|+++.+|+ ++.++.++++++.+ .++|+|||+.|+|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA---HGGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEecCCCCc
Confidence 1124688875 5999999998 67899999988875 38999999999887543
No 75
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.56 E-value=1.1e-14 Score=152.03 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=93.9
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|.||+++|.|+|+++|. ++++||+++|||+|+++ ..| |.+|+++++|+++||.|| .|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 4699999999999999885 67899999999999986 555 889999999988777555 6886432110
Q ss_pred ----cc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ----~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
.. ..+||.+. ++|+++.+|+ ++.++.++++++++..++++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 11 23588875 5999999997 78899999999987532369999999997554
No 76
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=1.5e-14 Score=150.44 Aligned_cols=118 Identities=20% Similarity=0.342 Sum_probs=94.1
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. +++.||+++|||+|++. . .+|.+|++++||+++||.||+ |++.....
T Consensus 418 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~ 491 (574)
T PRK07979 418 GGLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-I-QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSG 491 (574)
T ss_pred CCccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCC
Confidence 34599999999999999985 77899999999999984 3 459999999999887776665 77643211
Q ss_pred ---cc--cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ---RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ---~~--~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ...+||.+. ++|+++.+|+ ++.++.+++++|++.++.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 492 RHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred ccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 01 124688875 5999999997 899999999999875545899999999964
No 77
>PRK07064 hypothetical protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=147.50 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=92.9
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccc---
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW--- 239 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~--- 239 (347)
.+....|.||+++|.|+|+++|. +++.||+++|||+|++. . .+|.+|++++||+++||. |++|++.....
T Consensus 399 ~~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~ 472 (544)
T PRK07064 399 NVHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-L-GELATAVQENANMVIVLMNDGGYGVIRNIQDAQ 472 (544)
T ss_pred eeccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-H-HHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHh
Confidence 34444588999999999999985 68899999999999984 3 459999999999876665 45588643211
Q ss_pred -------cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 240 -------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 240 -------~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
.....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.++...
T Consensus 473 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~~~~ 531 (544)
T PRK07064 473 YGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA---KEGPVLVEVDMLSIG 531 (544)
T ss_pred cCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEccccc
Confidence 11134688875 5999999997 78899999998875 389999999987443
No 78
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=1.9e-14 Score=150.49 Aligned_cols=114 Identities=19% Similarity=0.340 Sum_probs=92.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------- 239 (347)
+.|+||+++|.|+|+++|. +++.||+++|||+|++. ..| |.+|++++||+++||.||+ |++....+
T Consensus 428 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~ 501 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQE-MSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNR 501 (595)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4599999999999999985 78899999999999984 455 9999999999987776665 77643111
Q ss_pred --cc--cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 --RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 --~~--~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ...+||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 555 (595)
T PRK09107 502 LSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID---VDKPVIFDCRVAN 555 (595)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01 123688875 5999999997 89999999999886 3899999999965
No 79
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.55 E-value=2.6e-14 Score=147.40 Aligned_cols=113 Identities=28% Similarity=0.329 Sum_probs=90.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
...|.||+++|.|+|+++|. ++++|||++|||+++++. ++|++|+++++|+++||.||+ |++.....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 34689999999999999985 678999999999999863 669999999999988887777 88643211
Q ss_pred ----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 ----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
......||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA---ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEc
Confidence 11234678775 5999999998 67888888887774 38999999986
No 80
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.53 E-value=2.9e-14 Score=149.58 Aligned_cols=115 Identities=23% Similarity=0.308 Sum_probs=92.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~----- 240 (347)
++.|.||+++|.|+|+++|. +++.||+++|||+|++. ..| |.+|++++||+++||.||+ |++....+.
T Consensus 431 ~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~ 504 (616)
T PRK07418 431 AGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGE 504 (616)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34699999999999999885 78899999999999974 445 9999999999987776665 676432111
Q ss_pred -----cc--CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 -----AA--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 -----~~--~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 505 ~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 560 (616)
T PRK07418 505 RYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA---HDGPVLIDVHVRR 560 (616)
T ss_pred CceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01 24688875 5999999998 88999999998885 3889999999864
No 81
>PRK07586 hypothetical protein; Validated
Probab=99.53 E-value=3.3e-14 Score=146.00 Aligned_cols=113 Identities=27% Similarity=0.292 Sum_probs=88.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~------ 239 (347)
+..|.||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|++++||+++||. |++|++.....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~-~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~ 455 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT-I-QALWTQARENLDVTTVIFANRAYAILRGELARVGAG 455 (514)
T ss_pred cCCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH-H-HHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCC
Confidence 33489999999999999986 78899999999999984 3 459999999999876664 45588643210
Q ss_pred -----------cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 -----------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 -----------~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
...+.+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~---~~~p~liev~~ 514 (514)
T PRK07586 456 NPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA---EPGPHLIEAVV 514 (514)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 00123588875 5999999997 78899999998875 38999999964
No 82
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.53 E-value=4e-14 Score=131.81 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=90.0
Q ss_pred ccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc----
Q 019023 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW---- 239 (347)
Q Consensus 166 ~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~---- 239 (347)
++..++||.++|.|+|++++ .++++|||+.|||++ .++ + ++|.+|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~-~-~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG-F-QALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH-H-HHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 44557999999999998655 378899999999995 665 3 459999999999998887776 67521110
Q ss_pred ----c-------------ccCCchHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 019023 240 ----R-------------AAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (347)
Q Consensus 240 ----~-------------~~~~~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (347)
. ....+||.+. ++|++++. ++-.++.++.+++++|++. ++|+|||+.+.=...|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~~C~~~~ 205 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILSPCPTGW 205 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCC
Confidence 0 1123578774 58998863 4455899999999999863 8999999986433333
No 83
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.53 E-value=2.8e-14 Score=149.04 Aligned_cols=119 Identities=27% Similarity=0.249 Sum_probs=94.1
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~----- 240 (347)
++.|+||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|++++||+++||.||+ |++......
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 35689999999999999885 67899999999999984 455 9999999999987776666 776432110
Q ss_pred -----cc----------CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecC
Q 019023 241 -----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRY 293 (347)
Q Consensus 241 -----~~----------~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~ 293 (347)
.. ..+||.+. ++|+++.+|+ +++++.+|+++|++...+ +||+|||+.+.+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~~ 558 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILERV 558 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 00 13688875 5999999997 899999999999865443 8999999999643
No 84
>PRK05858 hypothetical protein; Provisional
Probab=99.53 E-value=4.7e-14 Score=145.91 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=92.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|.||+++|.++|+++|. ++++||+++|||+|++. +.| |.+|+++++|+++||.|| .|++......
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999886 78899999999999985 455 999999999987666555 5886432111
Q ss_pred ----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 241 ----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
..+.+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.|.+.
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~~~~~ 532 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA---SGVPYLVNVLTDPS 532 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEECCC
Confidence 1135688875 5999999998 78999999999886 48999999999543
No 85
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.53 E-value=3.8e-14 Score=146.42 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=91.5
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec-CCccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N-N~~~~~~~~~~----- 240 (347)
++.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|++++||+++||.| +.|++......
T Consensus 405 ~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~ 478 (539)
T TIGR02418 405 NGMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQR 478 (539)
T ss_pred CCccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34689999999999999986 67899999999999984 445 99999999998766654 55876432111
Q ss_pred ----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 241 ----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+.
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~v~~~ 532 (539)
T TIGR02418 479 SSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME---VEGPVVVDIPVDYS 532 (539)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecCc
Confidence 1134688875 5999999998 78999999999875 38999999998643
No 86
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.53 E-value=3.2e-14 Score=148.21 Aligned_cols=119 Identities=24% Similarity=0.214 Sum_probs=93.5
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|+||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|++++||+++||.|| +|++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-MNE-IMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 4589999999999999885 68899999999999985 455 999999999988666555 5886432110
Q ss_pred ----ccCC-chHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ----AAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ----~~~~-~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
.... +||.+. ++|+++.+|+ ++.++.+++++|++..+.++|+|||+.+.+..
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~~~ 560 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTREL 560 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCc
Confidence 1122 488875 5999999997 89999999999987543489999999996543
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.53 E-value=5.4e-14 Score=146.32 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=91.5
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. ++++||+++|||+|++. +.| |.+|++++||+++||.|| +|++.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 45699999999999999886 68899999999999984 455 999999999987666555 588742111
Q ss_pred ---cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ---~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA---HDGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 11134688875 5999999998 79999999999875 3899999999865
No 88
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=4.1e-14 Score=147.69 Aligned_cols=116 Identities=22% Similarity=0.376 Sum_probs=92.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. +++.||+++|||+|++. .. +|.+|+++++|+++||.||+ |++.....
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~~-eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-IQ-ELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-HH-HHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34589999999999999986 68899999999999985 34 49999999999887776665 67543211
Q ss_pred c---c-c-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 R---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~---~-~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
+ . . ..+||.+. ++|+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 1 1 24688875 5999999997 789999999999862 3789999999964
No 89
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.52 E-value=4.3e-14 Score=147.48 Aligned_cols=115 Identities=24% Similarity=0.412 Sum_probs=91.3
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. ++++||++.|||+|++. ..| |.+|+++++|+++||.||+ |++....+
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-LQE-LGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35699999999999999986 67899999999999974 344 9999999999988877776 66532211
Q ss_pred c------ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 R------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~------~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
+ ....+||.+. ++|+++.+|+ ++.++.+++++|++ .+||+|||+.+..
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~v~~ 556 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD---YDGPVLIDCQVIE 556 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEECC
Confidence 0 1124688875 5999999998 78899999988876 3899999999953
No 90
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.52 E-value=7.5e-14 Score=145.40 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=91.7
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccc-----c--
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAE-----W-- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~-----~-- 239 (347)
..|.||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+++++++|+++|| +||.|++.... .
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~~e-L~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-MQD-LLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 4599999999999998875 78899999999999984 445 999999999987665 55568864311 0
Q ss_pred --cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 240 --~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
.....+||.+. ++|+++.+|+ +..++.++++++++ ...++|+|||+.+...
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITGD 534 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCCC
Confidence 11234688875 5999999997 78899999999885 2248999999999653
No 91
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.52 E-value=6.3e-14 Score=145.94 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=90.2
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~------ 240 (347)
+.|.||+++|.|+|+++|. ++++|||++|||++++ ..++|++|+++++|+++||.||+ |++....+.
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 3588999999999998875 6789999999999986 45669999999999988887776 565332111
Q ss_pred ----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++|+++.+|+ ++.++.+++++|.+ .+||+|||+++.+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA---APGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 0124578775 5999999998 68899999988875 3899999999854
No 92
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=7.4e-14 Score=145.34 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=91.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|++++||+++||.|| +|++.....
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 34589999999999999886 68899999999999984 444 999999999987666555 587643211
Q ss_pred ---cc--cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ---RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ---~~--~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ...+||.+. ++|+++.+|+ ++.++.+++++|.+. +++|+|||+.+.+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 123688775 5999999998 899999999998862 2899999999965
No 93
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=4.9e-14 Score=146.65 Aligned_cols=115 Identities=22% Similarity=0.360 Sum_probs=91.4
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|.||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|.+++||+++||.|| .|++....+.
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~ 492 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGR 492 (572)
T ss_pred CcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-HHH-HHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4589999999999999885 78899999999999985 445 999999999988766555 5776432110
Q ss_pred ---c-c-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ---~-~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. . ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 493 HSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 0 1 23688875 5999999998 899999999998862 2899999999865
No 94
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.52 E-value=6.1e-14 Score=145.66 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=91.9
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~------ 240 (347)
+.|.||+++|.|+|+++|. ++++||++.|||+|++. +.| |.+|+++++|+++||.||+ |++....+.
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~ 490 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQR 490 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCC
Confidence 4589999999999999986 67899999999999985 566 9999999999987776666 887542110
Q ss_pred ----cc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ----~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~~~~ 544 (564)
T PRK08155 491 VFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN---RPGPALIHVRIDA 544 (564)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11 24688875 5999999998 68899999988875 3899999999854
No 95
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.51 E-value=9.5e-14 Score=145.23 Aligned_cols=118 Identities=26% Similarity=0.302 Sum_probs=92.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHc-----CCCeEEEEecCC-cccccccc-
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENNH-YGMGTAEW- 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-----~LPvi~vv~NN~-~~~~~~~~- 239 (347)
++.|.||+++|.|+|+++|. +++.|||++|||+|++....| |.+|+++ +||+++||.||+ |++.....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 34589999999999999986 688999999999998742345 9999998 899887776665 77543211
Q ss_pred -----------cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 240 -----------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 240 -----------~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
...+.+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+..
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA---ADRPVVLEVKTDPNV 549 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCCC
Confidence 01134678775 5999999998 78899999999886 399999999996543
No 96
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.50 E-value=1e-13 Score=143.95 Aligned_cols=116 Identities=25% Similarity=0.340 Sum_probs=91.6
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------c
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------~ 240 (347)
+.|.||+++|.|+|+++|. +++.|||++|||+|++. +.| |.+|++++||+|+||.||+ |++..... .
T Consensus 412 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~ 485 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEER 485 (563)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCc
Confidence 4589999999999999986 67889999999999984 566 9999999999887776665 67643211 0
Q ss_pred ----cc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ----~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+..
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~v~~~~ 541 (563)
T PRK08527 486 YSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE---SDKVALIDVKIDRFE 541 (563)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEECCcc
Confidence 11 23578775 5999999997 78899999988875 389999999997643
No 97
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.50 E-value=8.7e-14 Score=144.27 Aligned_cols=114 Identities=25% Similarity=0.403 Sum_probs=90.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc------c-
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~------~- 239 (347)
+.|+||+++|.|+|+++|. +++.||+++|||+|++. +.| |.+|+++++|+++||.||+ |++.... .
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~e-L~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~ 483 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQE-LSTAVQYDIPVKILILNNRYLGMVRQWQELFYEER 483 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCc
Confidence 4589999999999998885 67899999999999984 455 9999999999988887776 5643211 0
Q ss_pred ----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ ++.++.+++++|++. ++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 484 YSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11124688875 5999999998 578999999988863 899999999964
No 98
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.50 E-value=1.1e-13 Score=129.11 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=87.9
Q ss_pred CcccccchhHHHHHHHHHH-HhCCCCceEEEEeCCcccc-cchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc----
Q 019023 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~-k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~---- 240 (347)
..|.||.++|.|+|+++|. +...++++|||+.|||++. +| +.| +.++..+++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999998871 1113688999999999985 55 444 7778889999988887776 675421111
Q ss_pred ------------ccCCchHhhh--cCCcceEE---ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 241 ------------AAKSPSYYKR--GDYVPGLK---VDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 241 ------------~~~~~d~~~~--g~gipg~~---VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
....+||.+. ++|+++++ |+ ++.++.+|+++|++ +.+||+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~--~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS--RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 1123678875 59999985 66 78999999999986 1389999999863
No 99
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.49 E-value=1e-13 Score=144.14 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=91.9
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. +++.||++.|||+|++. ..| |.+|++++||+++||.||+ |++....+
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-GTN-LATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-hHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 34699999999999999886 67899999999999985 344 9999999999887775555 78643211
Q ss_pred c----cc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 240 R----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 240 ~----~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
. .. ..+||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+.
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~~ 547 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK---EDIPAVIRVPVDKE 547 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCcc
Confidence 0 11 23688875 5999999997 88999999988875 38999999999763
No 100
>PLN02573 pyruvate decarboxylase
Probab=99.49 E-value=9.5e-14 Score=144.73 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=89.8
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc----cc
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW----RA 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~----~~ 241 (347)
++.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|++++||+++||.|| .|++..... ..
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-AQD-VSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-HHH-HHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 34689999999999999886 68899999999999984 455 999999999988666555 588654211 11
Q ss_pred cCCchHhhh--cC----C-cceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 242 AKSPSYYKR--GD----Y-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 242 ~~~~d~~~~--g~----g-ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
...+||.+. ++ | +++.+|+ ++.++.+++++|++. ..++|+|||+.+-
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~-~~~~p~lieV~v~ 552 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE-KKDCLCFIEVIVH 552 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh-CCCCcEEEEEEcC
Confidence 134678764 35 3 8899998 788999999998752 1289999999884
No 101
>PRK08617 acetolactate synthase; Reviewed
Probab=99.49 E-value=1.2e-13 Score=143.19 Aligned_cols=114 Identities=19% Similarity=0.270 Sum_probs=90.3
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~------ 240 (347)
+.|.||+++|.|+|+++|. +++.|||++|||+|++. ..| |.+|+++++|+++||.|| .|++......
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~ 485 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRS 485 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-HHH-HHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCc
Confidence 4689999999999999885 78899999999999984 445 999999999988666555 5776432110
Q ss_pred ---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++|+++.+|. ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~liev~~~~ 537 (552)
T PRK08617 486 SGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA---TDGPVVIDIPVDY 537 (552)
T ss_pred ccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCcEEEEEEecc
Confidence 1124678775 5999999998 78899999998875 3899999999865
No 102
>PRK08322 acetolactate synthase; Reviewed
Probab=99.49 E-value=1.5e-13 Score=142.06 Aligned_cols=114 Identities=20% Similarity=0.263 Sum_probs=90.5
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------- 239 (347)
+.|.||+++|.|+|+++|. +++.||+++|||++.+. ..| |.+|+++++|+++|| +|++|++.....
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-SQE-LETAVRLGLPLVVLILNDNAYGMIRWKQENMGFED 477 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-HHH-HHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCc
Confidence 4589999999999999885 78899999999999975 344 999999999987665 555688643211
Q ss_pred --cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 --~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ +++++.++++++.+ .++|+|||+.+.+
T Consensus 478 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA---QPGVHVIDCPVDY 529 (547)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 11124688875 5999999997 78999999998875 3899999999854
No 103
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.49 E-value=8.2e-14 Score=144.00 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=88.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------ 239 (347)
+..|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|+++++|+++|| +||+|++.....
T Consensus 401 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~ 474 (539)
T TIGR03393 401 PLWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT-I-QELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 474 (539)
T ss_pred hhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH-H-HHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCc
Confidence 34599999999999999885 78899999999999984 3 45999999999987666 555688643211
Q ss_pred cccCCchHhhh--cCCcc----eEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 240 RAAKSPSYYKR--GDYVP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 240 ~~~~~~d~~~~--g~gip----g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
.....+||.+. ++|++ +.+|+ +..++.+++++|++ .++|+|||+.+.
T Consensus 475 ~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~ 527 (539)
T TIGR03393 475 NDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA---HERLSLIEVVLP 527 (539)
T ss_pred CcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc---cCCeEEEEEEcC
Confidence 11234688775 48875 78887 78899999998875 389999999873
No 104
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.49 E-value=1.8e-13 Score=142.01 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=91.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccc-ccc----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA-EWR---- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~-~~~---- 240 (347)
...|.||+++|.|+|++++. ++++|||++|||+|++. .++|.+|+++++|+++||.||+ |++... +..
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 34699999999999998875 68899999999999874 3569999999999998887776 775431 111
Q ss_pred -----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 -----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
....+||.+. ++|+++.+|+ +++++.++++++++ .+||+|||+.+.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA---SGKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCH
Confidence 1123688775 5999999998 67888888888875 3899999999964
No 105
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.49 E-value=3.4e-13 Score=129.62 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=94.0
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc------
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~------ 240 (347)
.|.+|.++|+|+|+++|. +++.||++.|||++ ++| . ..|.+|+++++|+++||.||+ ||+...+..
T Consensus 69 ~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg-~-~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g 142 (301)
T PRK05778 69 HTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG-G-GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEG 142 (301)
T ss_pred chhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc-H-HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCC
Confidence 478999999999999885 78899999999997 565 3 349999999999987776665 786542210
Q ss_pred ----------ccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCCCCCCCCCCCC
Q 019023 241 ----------AAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHGHSMSDPGSTY 305 (347)
Q Consensus 241 ----------~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~GHs~~D~~~~Y 305 (347)
.....||.+. ++|++++ ++.-.++.++.+++++|+++ +||+|||+.+ .-+++... ..
T Consensus 143 ~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~~~C~~~~~~~~-----~~ 214 (301)
T PRK05778 143 SKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVLSPCVTFNGRNT-----ST 214 (301)
T ss_pred cccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCcCC-----cc
Confidence 0013467664 4888876 22334899999999999863 9999999864 33333322 23
Q ss_pred CCHHHHHHHH
Q 019023 306 RTRDEISGVR 315 (347)
Q Consensus 306 r~~~e~~~~~ 315 (347)
+++.++.+|.
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 4555555553
No 106
>PLN02470 acetolactate synthase
Probab=99.49 E-value=1.4e-13 Score=143.59 Aligned_cols=115 Identities=24% Similarity=0.368 Sum_probs=90.6
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|.||+++|.|+|+++|. +++.|||++|||+|++. .. +|.+|.+++||+++||.|| .|++....+
T Consensus 423 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~-eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~ 496 (585)
T PLN02470 423 GGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-IQ-ELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKA 496 (585)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HH-HHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCC
Confidence 34599999999999999986 78899999999999985 34 4999999999987666555 577542110
Q ss_pred ----cccC--------CchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ----RAAK--------SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ----~~~~--------~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.... .+||.+. ++|+++.+|+ ++.++.+|+++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~i~~ 558 (585)
T PLN02470 497 NRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD---TPGPYLLDVIVPH 558 (585)
T ss_pred ceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 0001 2688875 5999999997 78999999999886 3899999999964
No 107
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.49 E-value=1.6e-13 Score=142.14 Aligned_cols=115 Identities=21% Similarity=0.319 Sum_probs=90.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCC-CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW----- 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~----- 239 (347)
++.|.||+++|.|+|+++|. + +++|||++|||+|.+. . .+|.+|++++||+++|| +|++|++.....
T Consensus 393 ~~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~-~-~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~ 466 (549)
T PRK06457 393 AWLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT-M-MELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY 466 (549)
T ss_pred CCcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh-H-HHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence 34699999999999999885 5 7899999999999974 3 44999999999987666 555588643211
Q ss_pred ----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ ++.++..++++|++ .++|+|||+.+.+
T Consensus 467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 520 (549)
T PRK06457 467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN---TKGPAVLDAIVDP 520 (549)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCc
Confidence 11124688875 5999999998 89999999998875 3899999999964
No 108
>PRK08611 pyruvate oxidase; Provisional
Probab=99.49 E-value=1.5e-13 Score=143.09 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=90.7
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc--------
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW-------- 239 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~-------- 239 (347)
.|.||+++|.|+|+++|. +++.||+++|||+|++. .. +|.+|+++++|+++|| +|+.|++.....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~-eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-MQ-DFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-HH-HHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 599999999999999875 68899999999999985 44 4999999999987666 555578642111
Q ss_pred -cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 240 -RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 240 -~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+..
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA---QDKPVIIDVYVDPNA 533 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCcc
Confidence 11134688875 5999999997 78899999998875 389999999997543
No 109
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.49 E-value=1.9e-13 Score=141.97 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=90.4
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccc------cc
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE------WR 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~------~~ 240 (347)
+.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|+++++|+++||.|| .|++.... ..
T Consensus 412 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~ 485 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-SQE-LATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKR 485 (561)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-HHH-HHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 3489999999999999985 68899999999999985 444 999999999988666555 57754311 01
Q ss_pred ---c--cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ---A--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ---~--~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. ...+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~---~~~p~liev~~~~ 539 (561)
T PRK06048 486 YSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA---SDRPVVIDFIVEC 539 (561)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1 134688875 5999999998 78899999999885 3899999999864
No 110
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.48 E-value=2.3e-13 Score=141.62 Aligned_cols=117 Identities=23% Similarity=0.380 Sum_probs=92.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~------ 239 (347)
++.|++|+++|.|+|+++|. +++.||+++|||+|++. + ++|.+|+++++|+++||.||+ |++....+
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 34689999999999999985 67889999999999985 3 569999999999988876666 66532110
Q ss_pred ----cc-cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 240 ----RA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 240 ----~~-~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
.. ...+||.+. ++|+++.+|+ +..++.+++++|++. .++|+|||+.+.+.
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~~ 548 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDET 548 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecCc
Confidence 01 124678875 5999999998 788999999988863 27899999999653
No 111
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.48 E-value=2.3e-13 Score=141.65 Aligned_cols=115 Identities=27% Similarity=0.424 Sum_probs=90.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. ++++||+++|||+|++. +.| |.+|+++++|+++||.|| +|++.....
T Consensus 421 ~~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~ 494 (571)
T PRK07710 421 GGLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQ 494 (571)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCC
Confidence 34589999999999999985 68899999999999984 555 999999999987666555 577643211
Q ss_pred -----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 -----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. ++|+++.+|+ +..++.+++++|.+ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~vd~ 549 (571)
T PRK07710 495 RYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE---LQEPVVIDCRVLQ 549 (571)
T ss_pred cceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01134688875 5999999998 67888888888875 3899999999965
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.47 E-value=2.6e-13 Score=140.46 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=90.9
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------c
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------R 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------~ 240 (347)
+.|+||+++|.|+|+++|. ++++||+++|||+|++. ..| |.+|+++++|+++|| +|++|++....+ +
T Consensus 399 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~e-L~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~ 472 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQE-LGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDER 472 (548)
T ss_pred chhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4599999999999999885 67899999999999985 345 999999999987666 555577643211 1
Q ss_pred ----cc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 241 ----~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+.
T Consensus 473 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~id~~ 527 (548)
T PRK08978 473 YSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN---SEGPYLLHVSIDEL 527 (548)
T ss_pred ceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecCc
Confidence 11 23688875 5999999997 78899999998875 38999999999753
No 113
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.46 E-value=8.7e-13 Score=129.92 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=95.6
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCC-CeEEEEecCC-cccccccccccCCc
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-Pvi~vv~NN~-~~~~~~~~~~~~~~ 245 (347)
..|+||+++|.|+|+|+|. +++.|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+....+.......
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999986 67899999999999763 355999999996 7887776666 65432222222346
Q ss_pred hHhhh--cCCc-ceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 019023 246 SYYKR--GDYV-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (347)
Q Consensus 246 d~~~~--g~gi-pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~ 313 (347)
||.+. ++|+ .+++|+ +..++.+++++|++ .+||+|||+++....+-.. +.--.++.|+++
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~---~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~~ 355 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS---ANGPRLIEVKVRPGSRADL---GRPTTSPPENKR 355 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEecCCCccCC---CCCCCCHHHHHH
Confidence 77764 5776 356664 89999999999875 3899999999876544332 222356777653
No 114
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.46 E-value=3.3e-13 Score=128.32 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=84.5
Q ss_pred ccccchhHHHHHHHHHHHhCCCCceEEEEeCCccccc-chHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-------
Q 019023 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------- 240 (347)
Q Consensus 170 g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~------- 240 (347)
+++|.++|.|+|+++|. +++.||++.|||++.+ | ..| +.+|+++++|+++||.||+ ||+...+..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~e-l~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GNH-TIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HHH-HHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCc
Confidence 57899999999999886 7899999999999853 3 233 7779999999987776665 787431110
Q ss_pred -c--------cCCchHhhh--cCCcceE---EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 -A--------AKSPSYYKR--GDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 -~--------~~~~d~~~~--g~gipg~---~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. .+..||.+. ++|++++ +|+ ++.++.+++++|++. +||+|||+.+.-
T Consensus 142 ~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~~---~Gp~lIeV~~~c 202 (277)
T PRK09628 142 WTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFSH---KGFSFFDVFSNC 202 (277)
T ss_pred eeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHhC---CCCEEEEEcCCC
Confidence 0 112356764 5898874 565 899999999999863 999999998643
No 115
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.45 E-value=6.2e-13 Score=137.87 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=89.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccc--------cc
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT--------AE 238 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~--------~~ 238 (347)
..|+||+++|.|+|+++|. ++.||++.|||+|++. ..| |.+|+++++|+++||.||+ |.... ..
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~ 487 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPA 487 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCC
Confidence 4599999999999999972 6789999999999984 455 9999999999988887776 42110 00
Q ss_pred cccc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 239 WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 239 ~~~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.... ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 488 ~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id~ 539 (554)
T TIGR03254 488 PTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA---SGKPTLINAVIDP 539 (554)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEECC
Confidence 0111 34688875 5999999997 89999999999875 3899999999854
No 116
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.44 E-value=8e-13 Score=137.50 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=89.1
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-c--ccccc--c--c-
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTA--E--W- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~--~~~~~--~--~- 239 (347)
..|+||+++|.|+|+++|. ++.||+++|||+|++. ..| |.+|+++++|+++||.||+ | .+... . .
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~ 494 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDP 494 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCc
Confidence 4599999999999999982 6789999999999984 455 9999999999998887776 3 11100 0 0
Q ss_pred --cc-cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 --RA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 --~~-~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. .+.+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id~ 547 (569)
T PRK09259 495 SPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA---SGKPTLINVVIDP 547 (569)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEECC
Confidence 11 135688875 5999999998 78899999999875 3899999999854
No 117
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.43 E-value=3.7e-13 Score=141.17 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=91.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. +++.|||++|||+|.+. . .+|.+|++++||+++||.|| +|++....+
T Consensus 444 ~~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 517 (612)
T PRK07789 444 GGLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT-N-QELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEE 517 (612)
T ss_pred CCcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc-H-HHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 34589999999999999885 68899999999999974 3 45999999999987666555 587643211
Q ss_pred c----cc-----CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 R----AA-----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~----~~-----~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. .. ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 518 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 518 RYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred CcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 0 00 12688875 5999999997 789999999999873 2799999999964
No 118
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.43 E-value=6.6e-13 Score=138.61 Aligned_cols=114 Identities=25% Similarity=0.330 Sum_probs=89.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------c
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------R 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------~ 240 (347)
+.|+||+++|.|+|+++|. +++.||+++|||+|.+. ..| |.+|+++++|+++||.|| +|++....+ .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQE-LATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 3589999999999999885 67889999999999985 444 999999999988776555 477643211 0
Q ss_pred ---c-c-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 241 ---~-~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. . ...||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK---SGEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 1 1 23578875 5999999997 78999999998875 3899999999854
No 119
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.43 E-value=4e-13 Score=139.73 Aligned_cols=113 Identities=25% Similarity=0.340 Sum_probs=87.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------- 239 (347)
+.|+||+++|.|+|+++|. +++.||+++|||+|++. ..| |.+|.++++|+++||.|| +|++....+
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~~e-L~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-NQE-LAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-HHH-HHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCC
Confidence 4599999999999999885 78899999999999984 345 999999999987666555 587643211
Q ss_pred ---ccc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ---RAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ---~~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
... ..+||.+. ++|+.+.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 111 34688875 5999999997 7888888885 332 4899999999965
No 120
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.42 E-value=6.8e-13 Score=137.18 Aligned_cols=113 Identities=19% Similarity=0.136 Sum_probs=87.2
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc-----c
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-----A 241 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~-----~ 241 (347)
..|+||+++|.|+|+++|. + +++|+++|||+|++. ..| |.+|++++||+++||.|| .|++...... .
T Consensus 401 ~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~E-L~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~ 473 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GWE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFND 473 (535)
T ss_pred ccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HHH-HHHHHHcCCCcEEEEEECCccceeehhccCCCccc
Confidence 4599999999999999984 3 445789999999984 455 999999999987666555 5887543221 1
Q ss_pred cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 242 ~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
...+||.+. ++|+++.+|+ +..++.+++++|++. .++|+|||+.+.
T Consensus 474 ~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~ 521 (535)
T TIGR03394 474 LDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAMLP 521 (535)
T ss_pred CCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEECC
Confidence 234688774 5999999998 788999999988862 256899999874
No 121
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.41 E-value=1.5e-12 Score=123.97 Aligned_cols=114 Identities=20% Similarity=0.141 Sum_probs=86.1
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccccc-chHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-----
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~----- 240 (347)
..+.+|.++|.|+|+++|. +++.||++.|||++.. | + ..|.+|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG-~-~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 58 FHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEG-G-NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCc-H-HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 3466999999999998874 7889999999999863 3 3 449999999999998887776 776431110
Q ss_pred -----------ccCCchHhhh--cCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 241 -----------AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 241 -----------~~~~~d~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
.....||.+. ++|++++.. +-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0112367664 589988762 234899999999999974 9999999985
No 122
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.40 E-value=3e-12 Score=121.82 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=87.4
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCc-ccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-c--
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A-- 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~-~-- 241 (347)
...+.+|.++|+|+|+++|. ++..||++.||| ++.+| . ..|.+|+++++|+++||.||+ |++...+.. .
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig-~-~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIG-L-GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHcc-H-HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 34688899999999999985 788999999999 68887 3 449999999999988887776 787542211 0
Q ss_pred -------cC--C----chHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 242 -------AK--S----PSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 242 -------~~--~----~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
+. . .|+.+. ++|++.+. ....++.++.+++++|++. +||+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 00 1 166654 58887653 3446899999999999864 9999999974
No 123
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.38 E-value=8.9e-13 Score=136.98 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=85.9
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc----c----
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE----W---- 239 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~----~---- 239 (347)
.|.+|+++|.|+|+++| ++++|||++|||+|++. ..| |.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~e-L~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LNG-LLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cHH-HHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 47799999999999987 36789999999999985 344 9999999999887666665 6742110 0
Q ss_pred -c---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 240 -R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 240 -~---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
+ ....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~id 549 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP---TPGLTVIEVKTN 549 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc---CCCCEEEEEeCC
Confidence 0 1124688875 4999999997 78999999999874 389999999873
No 124
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.38 E-value=3.2e-12 Score=122.20 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=84.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcc-cccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-----
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~----- 240 (347)
..|++|.++|+|+|+++|. +++.||++.|||+ +++| ..| |.+|+++++|+++||.||+ |++...+..
T Consensus 67 ~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg-~~e-L~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~ 140 (286)
T PRK11867 67 FHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIG-GNH-FIHALRRNIDITYILFNNQIYGLTKGQYSPTSPV 140 (286)
T ss_pred hhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCC-HHH-HHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCC
Confidence 3488999999999999885 7899999999996 7776 344 9999999999987776665 787542110
Q ss_pred --c---c------CCchHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 241 --A---A------KSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 241 --~---~------~~~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
. . ...++.+. ++|...+. +.-.++.++.+++++|+++ +||+|||+.+
T Consensus 141 g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 141 GFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 0 01355554 46766552 2334789999999999863 8999999974
No 125
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.36 E-value=4.3e-12 Score=121.18 Aligned_cols=112 Identities=19% Similarity=0.284 Sum_probs=82.5
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc-c----
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~-~---- 241 (347)
.+.+|.++|+|+|+++|. +++.||++.|||++ .+| ...|.+|+++++|+++||.||+ ||+...+.. .
T Consensus 52 ~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G 125 (287)
T TIGR02177 52 HGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKG 125 (287)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCC
Confidence 466899999999999885 78999999999996 465 3449999999999988876665 787542221 0
Q ss_pred --c-----------CCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 242 --A-----------KSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 242 --~-----------~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
. .++++.+.+ +++.+.. ...++.++.+++++|+++ +||+|||+.+
T Consensus 126 ~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 126 VKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred cceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 133455554 4444443 225899999999999864 9999999975
No 126
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.32 E-value=1.3e-11 Score=129.31 Aligned_cols=119 Identities=19% Similarity=0.107 Sum_probs=88.4
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc--
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-- 240 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~-- 240 (347)
.+....+.||.++|.|+|+++|. +++.||+++|||+|.+....| |.+|..+++|+++||.|| .|++...+..
T Consensus 397 ~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~ 471 (595)
T TIGR03336 397 GTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPG 471 (595)
T ss_pred cccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCC
Confidence 33444689999999999998875 678999999999998632344 889999999998777666 5787542211
Q ss_pred --------ccCCchHhhh--cCCcceEEecC-CCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 241 --------AAKSPSYYKR--GDYVPGLKVDG-MDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 241 --------~~~~~d~~~~--g~gipg~~VDG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
....+||.+. ++|+++.+|.. .|..++.+++++|++ .+||++|++..
T Consensus 472 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~---~~gp~li~v~~ 529 (595)
T TIGR03336 472 TGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA---AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 0123577764 59999988853 355677888888885 38999999964
No 127
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.18 E-value=3.7e-11 Score=114.80 Aligned_cols=160 Identities=25% Similarity=0.277 Sum_probs=122.0
Q ss_pred HHHHHHHHhCCCCCCCCCCCC-------CcCCcCCCCCc-ccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccc
Q 019023 134 LLEVFSELMGRKDGCSHGKGG-------SMHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (347)
Q Consensus 134 ~~~~~~el~g~~~g~~~Grgg-------s~H~~~~~~~~-~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~ 205 (347)
+++-|.+.||++.-+...-|- -+|.+.|++.+ .|..|++|+.+|.|+|+..|. +++.+|++.||-.|+
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~ad----p~r~vvalsgdydfq 450 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecC----CCCceEEeecCchHH
Confidence 567788889987644322222 37888888777 566799999999999987654 889999999999998
Q ss_pred cchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCC--------------------chHhh--hcCCcceEEecCC
Q 019023 206 QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKS--------------------PSYYK--RGDYVPGLKVDGM 262 (347)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~--------------------~d~~~--~g~gipg~~VDG~ 262 (347)
. ..|.|...+++|+|-|+|+.||.| |.....++.+.. .|..+ .|.|++.++|-
T Consensus 451 f--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~-- 526 (592)
T COG3960 451 F--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF-- 526 (592)
T ss_pred H--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--
Confidence 5 678899999999999999999998 665543332210 01111 24567777776
Q ss_pred CHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCC
Q 019023 263 DALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDP 301 (347)
Q Consensus 263 D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~ 301 (347)
++.++..|+.+|.....+ .-|++||+...|....+|..+
T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgte 566 (592)
T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGTE 566 (592)
T ss_pred ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccccch
Confidence 788999999999887767 889999999999988887643
No 128
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.16 E-value=9.3e-10 Score=105.59 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=118.0
Q ss_pred CCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccc
Q 019023 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR 240 (347)
Q Consensus 163 ~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~ 240 (347)
.++...++.+|.+.++|.|++.|.+..+++..||++.|||++ ..| +++|..|...+.++++||.||. |+++.-+..
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S 139 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYMNTGIQRS 139 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCC
Confidence 345556789999999999999998876777789999999998 455 3789999999999999998887 565321110
Q ss_pred ---------------------ccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCC
Q 019023 241 ---------------------AAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYH 294 (347)
Q Consensus 241 ---------------------~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~ 294 (347)
.....|+... ++|++.+ +++-.|+.++.+++++|.++ +||.+|++.. ...+
T Consensus 140 ~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~ 216 (299)
T PRK11865 140 GSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGW 216 (299)
T ss_pred CCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCC
Confidence 0011234433 4777776 55667999999999999874 9999999984 4555
Q ss_pred CCCCCCCC--------C----CCCC-HHHHHHH--HhC--CChHHHHHHHHHHcC---CCCHHHHHHHHhhh
Q 019023 295 GHSMSDPG--------S----TYRT-RDEISGV--RQE--RDPIERIRKLILAHD---LATEKELKSVSDLC 346 (347)
Q Consensus 295 GHs~~D~~--------~----~Yr~-~~e~~~~--~~~--~DPi~~~~~~L~~~g---~~t~~e~~~i~~~~ 346 (347)
++.+++.. + .||= +..++.- .+. +.|...++++|..+| .+++|+++++++++
T Consensus 217 ~~~~~~~~~~~klAvetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v 288 (299)
T PRK11865 217 GFPPEKTIEIGRLAVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYI 288 (299)
T ss_pred CCCHHHHHHHHHHHHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHH
Confidence 55432110 0 1110 0000000 000 112234677777554 35789999998765
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.14 E-value=1.1e-10 Score=134.12 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.1
Q ss_pred ccCcccccc--hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHc--CCCeEEEEecCC-ccccccc--
Q 019023 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (347)
Q Consensus 166 ~~~~g~lG~--~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--~LPvi~vv~NN~-~~~~~~~-- 238 (347)
.++.|.+|. ++|.|+|+++|. +++|+|++|||+|.+. ..| |.+|+++ ++|+++||.||+ |++....
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~~E-L~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-TNG-LSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-hhH-HHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 345688998 599999999884 6789999999999974 444 9999884 999887776665 6654321
Q ss_pred ----c-----c---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 239 ----W-----R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 239 ----~-----~---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
. . ....+||.+. +||+++.+|+ ++.++.+++++|.+ .++|+|||+.|.|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~---~~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV---EQMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc---cCCCEEEEEecCh
Confidence 1 0 0124678775 5999999998 78899999988774 3899999999965
No 130
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.08 E-value=1.3e-09 Score=109.41 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=102.2
Q ss_pred ChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCc--ccCcccccch
Q 019023 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGF--YGGHGIVGAQ 175 (347)
Q Consensus 98 ~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~--~~~~g~lG~~ 175 (347)
.=||-+.--+...|+++|.|+.- .|. .+||-.. +..-+...| -+-+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG~~~----------~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFGALD----------IRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------cccccee----------eecCCCCeEEcccchhhcccc
Confidence 56788888889999999999871 111 1233211 111111112 2346999999
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccccccccc-CCc-----hHh
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSP-----SYY 248 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~-~~~-----d~~ 248 (347)
+|.+.|+++|. +++++|.|+||||++. .+.| +.+--+|+|| +|||++|++|.+-....... +.. ||.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql-TvQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL-TVQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh-hHHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999998 6799999999999997 3556 8888899997 78999999998754332211 111 333
Q ss_pred hh--cCCcce----EEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 249 KR--GDYVPG----LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 249 ~~--g~gipg----~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
+. ++|... .++. ....+..+++.+.+. .+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~~--~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRAT--TGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEeec--ChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 31 233221 2232 334555566555541 2789999998754
No 131
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.05 E-value=3.5e-08 Score=101.89 Aligned_cols=167 Identities=21% Similarity=0.185 Sum_probs=114.3
Q ss_pred cCcccccchhHHHHHHHHHHHhC-------CCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccccc
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAE 238 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~-------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~ 238 (347)
..+++||-+...|+-.|.-.||- .++..|+||.|||++.++...+|+.+|++++|. +||||+.|......|+
T Consensus 189 FpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpV 268 (887)
T COG2609 189 FPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPV 268 (887)
T ss_pred cCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcc
Confidence 46789999999999999998874 356799999999999999999999999999998 6799999977543332
Q ss_pred ccc---------------------------------------------cCCchHhh---h-c-------CC---------
Q 019023 239 WRA---------------------------------------------AKSPSYYK---R-G-------DY--------- 253 (347)
Q Consensus 239 ~~~---------------------------------------------~~~~d~~~---~-g-------~g--------- 253 (347)
... ..+-+|.. . | ++
T Consensus 269 rgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLV 348 (887)
T COG2609 269 RGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALV 348 (887)
T ss_pred cCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHH
Confidence 100 00011211 0 0 11
Q ss_pred -------cceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHH
Q 019023 254 -------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRK 326 (347)
Q Consensus 254 -------ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~ 326 (347)
+-.+.--|||+..|++|++.|.+. +++|++|-++|.+++|....-.+. ......+++ ..|-|+.||+
T Consensus 349 a~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg~~~eg~--n~aHq~kkm--~~~~l~~~Rd 422 (887)
T COG2609 349 ADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLGEAAEGK--NIAHQVKKM--TPDQLKEFRD 422 (887)
T ss_pred HhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCchhhccc--chhhhhhcC--CHHHHHHHHh
Confidence 111234699999999999999974 368999999999999886443332 112222222 2355677777
Q ss_pred HHHHcCCCCHHHHHH
Q 019023 327 LILAHDLATEKELKS 341 (347)
Q Consensus 327 ~L~~~g~~t~~e~~~ 341 (347)
++-= .++++|+++
T Consensus 423 r~~i--pvsd~e~e~ 435 (887)
T COG2609 423 RFGI--PVSDAELEE 435 (887)
T ss_pred hcCC--CCchhhhhc
Confidence 6521 245555554
No 132
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.05 E-value=1.4e-09 Score=108.20 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=89.4
Q ss_pred CCCCcc-cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCC-cccccc
Q 019023 161 KDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGTA 237 (347)
Q Consensus 161 ~~~~~~-~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~-~~~~~~ 237 (347)
|..++. |.+|+||-|++.|+++|++. +++.|+|+-||++|... .+| +.++.++|||++.||. ||+ ||..+.
T Consensus 420 Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~ 493 (571)
T KOG1185|consen 420 PRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDD 493 (571)
T ss_pred cccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcc
Confidence 444553 55788888888777777765 99999999999999863 567 8999999999886665 555 565443
Q ss_pred cccc---------------cCCchHhh--hcCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 238 EWRA---------------AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 238 ~~~~---------------~~~~d~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.+.. ....+|.+ .++|..|+.|+ .+.++.++++++.+. .++|++|.+..-+
T Consensus 494 ~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~p 561 (571)
T KOG1185|consen 494 GWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIGP 561 (571)
T ss_pred cHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEecc
Confidence 2211 11234544 46899999998 789999999888762 2699999998754
No 133
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.02 E-value=4.6e-10 Score=110.12 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=94.7
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccccc----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRA---- 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~---- 241 (347)
|+.|.||.++|+|+|+..|. ++..||-+-||++|++- +.| |.++.+.++||.+++.||. .||.+..+..
T Consensus 521 GGLGtMGfGLPAAIGAsVA~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ 594 (675)
T KOG4166|consen 521 GGLGTMGFGLPAAIGASVAN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEA 594 (675)
T ss_pred CCccccccCcchhhcccccC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHh
Confidence 56799999999999998875 89999999999999884 566 9999999999987777776 5886653311
Q ss_pred ------cCCchHhhhc--CCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 242 ------AKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 242 ------~~~~d~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
-.+|+|-+.+ +|+++.+|. .-+++.+.+++.+. .+||+|+|+.+.....
T Consensus 595 rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls---TkGPvLleV~v~~keh 651 (675)
T KOG4166|consen 595 RYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS---TKGPVLLEVIVPHKEH 651 (675)
T ss_pred hhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC---CCCCeEEEEEccCccc
Confidence 1357887764 899999997 56788888888775 3999999999865543
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.49 E-value=5.9e-07 Score=90.42 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=78.6
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccccccccc---
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA--- 242 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~--- 242 (347)
...|++|+.+|.++|+++|. +++++|.|+|||++++- +.| +.++.+|+|| .||+++|++|-+-.......
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 34699999999999999997 56899999999999973 566 8888999998 56888888997644322210
Q ss_pred -CCchHhhh--cCC-----cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 243 -KSPSYYKR--GDY-----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 243 -~~~d~~~~--g~g-----ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
..=||.+. ++| +...+|- .-.+..++.+.+..- + ++|.+|||+..
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 01134332 222 2233332 234566666666531 4 88999999763
No 135
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=6.1e-07 Score=89.37 Aligned_cols=114 Identities=19% Similarity=0.224 Sum_probs=86.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------- 239 (347)
+.+.||+-+.-++|+. ...+++-|++++|||++.| .+..|.++..++..+++|+ +|-+||-....+
T Consensus 442 gfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred cccccccccccccccc----cCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 4578999888888875 5568899999999999986 5666999999999987666 454687432211
Q ss_pred -----------cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 -----------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 -----------~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
......||++. +||....+|. +..++.+|++.|++ +.+++||+++|..
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~---~~~ttvi~I~t~P 576 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA---SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh---CCCCEEEEEecCC
Confidence 11223578874 5999999987 88999998888876 3899999998753
No 136
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.14 E-value=5.2e-05 Score=73.01 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcc-cccchHHHHHHHHHHcCCCeEEEEecCC-cccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----- 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~----- 239 (347)
..++.-|-..++|.|+.+|. ++..||++.|||. +..|. ..+--|...+..|++||.||. |+.+.-+.
T Consensus 67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 44678889999999999987 5568999999995 57773 458888899999998888887 67632111
Q ss_pred --ccc---C------Cc-hHhh--hcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 240 --RAA---K------SP-SYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 240 --~~~---~------~~-d~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
..+ + .+ |... .++|.+.+ ++---++..+.+.+++|+++ +||.+|++.+
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 000 0 11 2222 34676654 44334688999999999975 8999999974
No 137
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.09 E-value=6e-06 Score=80.46 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=73.6
Q ss_pred CcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcC-----CC-----eE
Q 019023 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-----LP-----AI 224 (347)
Q Consensus 155 s~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-----LP-----vi 224 (347)
..|..-.-.|-.--.|-+|+.+..|.|+++ .+++-+++|++|||++.+|- +|+.|. -| |+
T Consensus 125 pSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~dGaVL 194 (379)
T PF09364_consen 125 PSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVL 194 (379)
T ss_dssp -SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTTS-EEE
T ss_pred ccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCcccCceee
Confidence 345543222333345778888888888775 55999999999999999885 333442 12 55
Q ss_pred EEEecCCccccccccccc-CCchHhh--hcCCcceEEecCCCHHHHHHHHHHHHHH-----------hccC----CC--E
Q 019023 225 LVCENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN----GP--M 284 (347)
Q Consensus 225 ~vv~NN~~~~~~~~~~~~-~~~d~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~-----------ar~~----gP--~ 284 (347)
=|+-=|+|-|+.++-... ...++.+ +|+|..-+.|+|.|+.++...+..++++ +|++ +| -
T Consensus 195 PILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwP 274 (379)
T PF09364_consen 195 PILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWP 274 (379)
T ss_dssp EEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EE
T ss_pred ceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 555668998876653211 1223333 4889888999999999888766555433 2221 22 2
Q ss_pred EEEEEEecCCCCCC
Q 019023 285 ILEMDTYRYHGHSM 298 (347)
Q Consensus 285 lIe~~t~R~~GHs~ 298 (347)
+|.++|.++++-..
T Consensus 275 mivlRtPKGWtgP~ 288 (379)
T PF09364_consen 275 MIVLRTPKGWTGPK 288 (379)
T ss_dssp EEEEE--TTTTS-S
T ss_pred EEEEECCcccCCcc
Confidence 66788888876553
No 138
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.65 E-value=0.00016 Score=74.95 Aligned_cols=111 Identities=24% Similarity=0.247 Sum_probs=79.0
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccc-cchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccc-----
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRA----- 241 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~----- 241 (347)
+-.+|.++++|-|++++. ++.+|+++|||.|. .|. .++..|...+.+++++|.+|.+ +|+..+..-
T Consensus 427 t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~ 499 (640)
T COG4231 427 TTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVA 499 (640)
T ss_pred hhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccc
Confidence 345666677777776653 37899999999984 564 5699999999999999999998 675443311
Q ss_pred -----cCCchHh--hhcCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 242 -----AKSPSYY--KRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 242 -----~~~~d~~--~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
+...+.. .++.|+..+. ||=.|+.++.+++++|+++ .||.+|.++
T Consensus 500 ~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 500 AEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred cCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 0111122 2567766554 4557899999999999875 889999765
No 139
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.61 E-value=0.0018 Score=63.87 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=62.5
Q ss_pred ceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-ccccc-------cccccc---C------CchHhh--hcC
Q 019023 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---K------SPSYYK--RGD 252 (347)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~-------~~~~~~---~------~~d~~~--~g~ 252 (347)
.-||++.|||.. ..|. ..+.-|...+.+|++||.||. |+.+. |....+ + .-|... .++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 479999999965 6663 457777778899988887776 77642 111000 0 012222 346
Q ss_pred CcceE-Eec-CCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
|.+.+ ++- |-++.++.+++++|.++ +||.+|++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEc
Confidence 76664 332 34889999999999975 9999999985
No 140
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.39 E-value=0.00049 Score=70.53 Aligned_cols=112 Identities=22% Similarity=0.175 Sum_probs=72.9
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCe-EEEEecCCccccccc---------
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAE--------- 238 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPv-i~vv~NN~~~~~~~~--------- 238 (347)
+||=|. ++.|+|++.|. .++++.++||=++-.-. -.|-+......|+ |+|++||+-||-.--
T Consensus 422 ~GIDG~-vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~f 493 (566)
T COG1165 422 SGIDGT-VSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVF 493 (566)
T ss_pred cccchh-HHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchH
Confidence 343333 67789998874 45699999999984211 2355666667775 566677777763221
Q ss_pred cccc---CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 239 WRAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 239 ~~~~---~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
++.+ .+-||... .|++.+-+++ ...++.+++..+.. ..|-.|||++|-|-
T Consensus 494 e~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~---~~g~~viEvkt~r~ 548 (566)
T COG1165 494 ERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR---RSGTTVIEVKTDRS 548 (566)
T ss_pred HHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc---CCCcEEEEEecChh
Confidence 1111 23366553 3788777776 57788888877664 27789999999763
No 141
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0041 Score=65.34 Aligned_cols=111 Identities=19% Similarity=0.224 Sum_probs=71.8
Q ss_pred cCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHH-HHcCCC----eEEEEecC
Q 019023 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCENN 230 (347)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LP----vi~vv~NN 230 (347)
.|..-.-.|.....|.+|+++..|.|+|+ ..++-++.|++|||+...|...- -..+ .-++-+ ++=|..=|
T Consensus 139 SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplat-sWhs~kf~np~~dGavLPIL~lN 213 (793)
T COG3957 139 SHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLAT-SWHSNKFLNPARDGAVLPILHLN 213 (793)
T ss_pred cccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCcccc-ccccccccCccccCceeeEEEec
Confidence 46553333555566888998888888875 45899999999999887765221 2222 122322 55566669
Q ss_pred CcccccccccccC-CchHhh--hcCCcceEEecCCCHHHHHHHH
Q 019023 231 HYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQAC 271 (347)
Q Consensus 231 ~~~~~~~~~~~~~-~~d~~~--~g~gipg~~VDG~D~~av~~a~ 271 (347)
+|.|..++-.... ..++.+ .|+|..-+-|+|.|+.+..+.+
T Consensus 214 GykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 214 GYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred ceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 9998776543322 233444 4788888889998888755443
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.29 E-value=0.068 Score=60.64 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=63.3
Q ss_pred ceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCC-ccccc-------cccccc---C------CchHhh--hcC
Q 019023 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---K------SPSYYK--RGD 252 (347)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~-------~~~~~~---~------~~d~~~--~g~ 252 (347)
.-+|++.|||.+ ..|. ..+.-+...+.++.+||.||. |+.+. |..-.+ + .-|... .++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 369999999965 6663 457788888999988887776 66532 111000 0 012222 346
Q ss_pred CcceE-Eec-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 019023 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (347)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (347)
|.+.+ ++- |-++.++.+++++|..+ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 76654 443 55889999999999875 99999999863
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.12 E-value=0.072 Score=45.26 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhhcCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~g~g 253 (347)
..+|.|.+.+. . ..+++ ..|.|..+ ..+.+..|...++|+|+|+...... ..... ....+.....-.
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~---~q~~~~~~~~~~ 116 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQT---FQSMFDLGMYRS 116 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCc---ccccCHHHHHHH
Confidence 45566766653 2 33333 34888875 4677888888899999999766542 11110 111111111111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (347)
++...+--.++.+..+.+.+|+..+.. .||++|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 117 IPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 222222223566667777777766666 89999976
No 144
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.88 E-value=0.13 Score=45.21 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhh--hcCCc
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~--~g~gi 254 (347)
+|-|.+.+. ++-.++++..|=|.+| ..-++..|...++|+|+|.-+.... .+. ......|... +.+--
T Consensus 53 mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~---~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT---DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC---CCCcccCHHHHHHHhhc
Confidence 455665443 3446677777888887 3456888889999999998665432 111 0111112111 11111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (347)
...+|+ ++..+.+++++|+..+.. .||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 224565 788888888888888776 89999997
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.78 E-value=0.13 Score=44.10 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--c
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--G 251 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g 251 (347)
...+|.|.+++. ++-.++++..|=|..+ ..+++..|...++|+|+|.-+... ...... ....|.... .
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~---~q~~d~~~~~~~ 116 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA---FQEIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc---ccccCHHHHHHH
Confidence 345566666553 1223344444666666 467899999999999999865443 222110 001121111 1
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (347)
+-....+++ ++.++.+.+.+|...+.. +||+.|++
T Consensus 117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 112235555 788899999999988865 68999986
No 146
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.72 E-value=0.043 Score=61.67 Aligned_cols=113 Identities=19% Similarity=0.089 Sum_probs=74.9
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccc--cC
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRA--AK 243 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~--~~ 243 (347)
+.-.||+....++|.+.+. +++.+|+++|||.+ ..|. -++..|..-+.+++++|.+|.. +|+..+..- ..
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 4467888888888888652 34679999999998 5664 4588888889999988888876 786544321 23
Q ss_pred CchHhh--hcCCcceEEecCCCHHHH-----------------HHHHHHHHHHhcc-CCCEEEEEE
Q 019023 244 SPSYYK--RGDYVPGLKVDGMDALAV-----------------KQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 244 ~~d~~~--~g~gipg~~VDG~D~~av-----------------~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
..++.. ++.|+.-+.|=-.|+... .+++++++ |+ +|+++|..+
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~~ 615 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIYD 615 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 344444 467776665433344444 34444444 24 888888654
No 147
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.69 E-value=0.039 Score=62.08 Aligned_cols=112 Identities=18% Similarity=0.098 Sum_probs=72.9
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCCc-cccccccccc--CC
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~--~~ 244 (347)
.-.||+....++|++.+. .++.+|+++|||.| ..|.. +|..|..-+.+++++|.+|.. +|+..+..-. ..
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 457888888888888763 34579999999998 56643 788888999999999988887 7865443211 11
Q ss_pred chHhh--hcCCcceEEecCCCHHH----------------HHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 245 PSYYK--RGDYVPGLKVDGMDALA----------------VKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 245 ~d~~~--~g~gipg~~VDG~D~~a----------------v~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
+.+.. ++.|+.-+.|=-.|+.. ..+++++++. + +||++|..+
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~---~~~GvsViI~~ 601 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR---ETPGVTVLIYD 601 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh---cCCCcEEEEEc
Confidence 22222 36777666542223333 2334444442 4 888888654
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.52 E-value=0.22 Score=42.93 Aligned_cols=89 Identities=24% Similarity=0.128 Sum_probs=57.3
Q ss_pred eEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh-cCCcceEEecCCCHHHHHHHH
Q 019023 194 VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR-GDYVPGLKVDGMDALAVKQAC 271 (347)
Q Consensus 194 ~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~-g~gipg~~VDG~D~~av~~a~ 271 (347)
++++..|-|..+ ....|..|...+.|+|+|+-+... ..+.+ .......+.... +...+...+. ++.++.+.+
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 140 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARYGGHPWPVLAPS--SVQEAFDLA 140 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHhCCCCEEEEeCC--CHHHHHHHH
Confidence 778888999888 356788888889999999865443 22211 100011111111 1123334454 889999999
Q ss_pred HHHHHHhcc-CCCEEEEE
Q 019023 272 KFAKEHALK-NGPMILEM 288 (347)
Q Consensus 272 ~~A~~~ar~-~gP~lIe~ 288 (347)
+.|...++. ++|++|..
T Consensus 141 ~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 141 LEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHhCCCEEEEc
Confidence 999998888 88999865
No 149
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.07 E-value=0.2 Score=49.50 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh-h--c
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-R--G 251 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~-~--g 251 (347)
.+.+++|+++| +.++++...|..+. ..+|.+.+|+-..+|+++++.+-. +-++........+.++. + |
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq~D~~~~~~~~g 130 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGNIQPSQGDYFQAVKGGG 130 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCCCcchhHHHHHHHhcCC
Confidence 46778888886 45688888777776 378999999999999888877755 22221111111222233 2 2
Q ss_pred CC-cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 252 ~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
+| .+-+..+-.|+.++++...+|.+.+.+ +-|++|-..++- +|+
T Consensus 131 hgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~l--sh~ 176 (352)
T PRK07119 131 HGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVL--GQM 176 (352)
T ss_pred CCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhh--hCc
Confidence 22 334556667999999999999988877 889999998853 565
No 150
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.58 E-value=0.32 Score=48.60 Aligned_cols=114 Identities=18% Similarity=0.140 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh-h-c
Q 019023 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-R-G 251 (347)
Q Consensus 174 ~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~-~-g 251 (347)
+.+.+++|+++| +.++++...=+++. ..+|.+.+++-..+|+++++.+... .++.........|+.. + |
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~ 129 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWG 129 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhcc
Confidence 346778888876 34566665555554 3589999999999998888777542 1111111111122221 2 2
Q ss_pred -CC-cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 019023 252 -DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 252 -~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (347)
+| +|-+...-.|+.++++....|.+.+.+ +-|++|-..++ -+|+.
T Consensus 130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 33 444666777999999999999988877 88999999884 67764
No 151
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=94.37 E-value=0.16 Score=57.21 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=57.6
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc-ccchHHHHHHHHHHcCCCeEEEEecCCc-cccccccccc--CC
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~--~~ 244 (347)
...||+....++|.+-+. +++.+|+.+|||.+ ..|. -++..|..-+.+++++|.+|.. +|+..+..-. ..
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 457787788888887653 34579999999998 4564 4588888889999998888886 7865443211 11
Q ss_pred chHhh--hcCCcceEEe
Q 019023 245 PSYYK--RGDYVPGLKV 259 (347)
Q Consensus 245 ~d~~~--~g~gipg~~V 259 (347)
+.+.. ++.|+.-+.|
T Consensus 568 ~~i~~~~~a~GV~~v~v 584 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVV 584 (1186)
T ss_pred HHHHHHHHhCCccEEEE
Confidence 22221 4677765544
No 152
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.36 E-value=0.85 Score=39.87 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHH-HcCCCeEEEEecCCc-cccccccccc---CCchH
Q 019023 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAA---KSPSY 247 (347)
Q Consensus 173 G~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa-~~~LPvi~vv~NN~~-~~~~~~~~~~---~~~d~ 247 (347)
+.+..+|.|..++ .++.++|+.+=|.. ...-+|..|. ..++|+++|+-..+. +...+.+... ....+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l 115 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLL 115 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHH
Confidence 4455666666643 34567888877743 3556677888 899999999844433 2111111100 01111
Q ss_pred hhhcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 248 YKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 248 ~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
. ..+++...++ +++++ .++.+|+..+.+ +||+.|-+.
T Consensus 116 ~--~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 116 D--TLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred H--HcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1355677776 68888 999999988877 899998764
No 153
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=94.19 E-value=0.27 Score=43.18 Aligned_cols=106 Identities=21% Similarity=0.154 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhh--h
Q 019023 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--R 250 (347)
Q Consensus 174 ~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~--~ 250 (347)
...-+|.|.+++. ++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-.. ... ....+ ...|... +
T Consensus 50 ~A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q-~~~d~~~~~~ 121 (172)
T PF02776_consen 50 GAAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEG-RGAFQ-QEIDQQSLFR 121 (172)
T ss_dssp HHHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTT-TTSTT-SSTHHHHHHG
T ss_pred hhHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhc-ccccc-cchhhcchhc
Confidence 3345566766653 2334455555666666 345677788899999999866554 222 11111 0112211 1
Q ss_pred cCCcceEEecCCCHHHHHHHHHHHHHHh-cc-CCCEEEEEE
Q 019023 251 GDYVPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (347)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (347)
.+.-...+++ ++.++.+++++|+..+ .. .||+.|++-
T Consensus 122 ~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 122 PVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp GGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 2333346665 6777888888888777 45 999999984
No 154
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.53 E-value=0.29 Score=45.59 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc---cccccccccCCchH-hhhc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG---MGTAEWRAAKSPSY-YKRG 251 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~---~~~~~~~~~~~~d~-~~~g 251 (347)
+.+++|++++ +.++++..--.+++ ...|.|.+++-.++|+++++.|..-. +.+..+ ..|+ ..+-
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~~----q~D~~~~~d 116 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQPE----QDDLMAARD 116 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB-----SHHHHHTTT
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcCC----hhHHHHHHh
Confidence 5667777775 33455554444444 25688999999999988887764431 222111 1233 2344
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
++.+. +.-.|+.+.++.+..|.+.+.+ .-|+++-...++. .|+
T Consensus 117 ~~~~v--l~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~ 160 (230)
T PF01855_consen 117 SGWIV--LAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHS 160 (230)
T ss_dssp SS-EE--EE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-
T ss_pred cCeEE--EeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCc
Confidence 56644 4445899999999999988888 9999999998876 254
No 155
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.37 E-value=1.1 Score=39.20 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-ccccc--cccc--CC-chH
Q 019023 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAA--KS-PSY 247 (347)
Q Consensus 174 ~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~--~~~~--~~-~d~ 247 (347)
...-+|-|.+.+. .-.++++..|=|.+| ..-++..|...+.|+|+|+-+.... .++.. .... .. .|.
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVF 118 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHH
Confidence 3344555666543 234555556888777 3456888889999999998665431 11110 0000 00 011
Q ss_pred hh--hcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 019023 248 YK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (347)
Q Consensus 248 ~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (347)
.. +.+.-...+|. ++.++.+++++|+..+.. +||+.|++
T Consensus 119 ~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 119 LKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11 11212224555 677888888888888777 89999986
No 156
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.01 E-value=1.4 Score=38.26 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHH-HHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn-~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gi 254 (347)
+++|.|+|+. + -++++..+ ..+.+ ..++.+. .++.+++|+++++...+++.+..........++.-. -.+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-~~i 122 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALL-RAI 122 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHh-cCC
Confidence 3556677652 2 34555555 44433 4566666 999999999999886655432111111111222221 245
Q ss_pred ceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 255 pg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|+++| .=.|+.+++..++.|++ .++|++|-+
T Consensus 123 Pg~~v~~Ps~~~~~~~ll~~a~~---~~~P~~irl 154 (156)
T cd07033 123 PNMTVLRPADANETAAALEAALE---YDGPVYIRL 154 (156)
T ss_pred CCCEEEecCCHHHHHHHHHHHHh---CCCCEEEEe
Confidence 66543 34578889999998886 377998754
No 157
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=92.82 E-value=0.71 Score=40.59 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|-|.+.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-......... ....|.... ..-
T Consensus 48 ~~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTGA--NQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCCC--Ccccchhhhcccee
Confidence 3445666654 34445667777888887 3456888889999999998654322110000 011111110 000
Q ss_pred cceEEecCCCHHH------HHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 254 VPGLKVDGMDALA------VKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~a------v~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
-...+|. ++.. +.+.+++|+..+.. .||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 0112332 2333 56666666666655 699999873
No 158
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.33 E-value=1.4 Score=44.19 Aligned_cols=108 Identities=16% Similarity=0.080 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHh-hhcCC
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KRGDY 253 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~-~~g~g 253 (347)
.+.+++|+++| +.++++..--.+++ ..+|.|.+|+-..+|+++++.|-... ++.+......|+. .+.-|
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~g 130 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDTG 130 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhcC
Confidence 46778888887 34566666656665 36899999999999988777654432 2222111122322 23223
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (347)
. +..-..|+.++++....|...+.+ .-|++|-...++..
T Consensus 131 ~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s 170 (390)
T PRK08366 131 W--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS 170 (390)
T ss_pred E--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc
Confidence 3 233335899999988899888878 99999999887654
No 159
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.16 E-value=0.99 Score=47.48 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch-Hhhh-c-
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS-YYKR-G- 251 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d-~~~~-g- 251 (347)
.+.+++|+++| +.++++.+-=.+++ ...|.|.+|+...+|+++++.|.. |.++.........| +..+ +
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcCC
Confidence 36778888876 34566665555555 468999999999999877776654 22221111111112 2222 2
Q ss_pred CC-cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecC
Q 019023 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRY 293 (347)
Q Consensus 252 ~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~ 293 (347)
+| .+-+.+.-.|+.++++.+.+|...+.+ .-|+++-...+..
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~ 363 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLA 363 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHh
Confidence 22 333556777999999999999998888 9999999998853
No 160
>PRK08611 pyruvate oxidase; Provisional
Probab=91.46 E-value=1.6 Score=45.78 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|.|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-+......... .....|.... ...
T Consensus 56 ~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKL---TGKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHH---hCCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhccc
Confidence 3445566543 344566777779999983 45688888999999999865443211110 0111122211 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
--..+|+ ++..+.+++.+|+..+.. .||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 1124454 788888888888877767 8999999853
No 161
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.24 E-value=1.4 Score=44.01 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC---cccccccccccCCchHhhh-
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH---YGMGTAEWRAAKSPSYYKR- 250 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~---~~~~~~~~~~~~~~d~~~~- 250 (347)
.+.+++|+++| +.++++...-+++. ..+|.+.+|+-..+|+++++.+-. -|+-+..+ ..+..+...
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhcC
Confidence 36678888876 34566665555554 257999999999999888776643 22322211 111112221
Q ss_pred cCC-cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 019023 251 GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (347)
Q Consensus 251 g~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (347)
++| .+-+.+.-.|+.+++....+|.+.+.+ .-|++|-...+ -+|+.
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~--lsh~~ 176 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDET--VGHMY 176 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchH--HhCCe
Confidence 222 333556677999999999999988888 99999998883 36653
No 162
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=91.03 E-value=1.9 Score=45.01 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|.|.|.+ .++-.+|++..|=|.+| ..-++..|..-+.|+|+|+-.-......... ....|.... .+--
T Consensus 53 ~mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~--~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHDY--FQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCCc--ccccchhhhhcccee
Confidence 345566544 34456677778999988 3456888889999999998543321100000 011122211 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
-..+|. ++..+.+++++|+..+.. .||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 123444 677888888888877766 8999999863
No 163
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.07 E-value=2.1 Score=44.56 Aligned_cols=104 Identities=21% Similarity=0.164 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhh--hcC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~--~g~ 252 (347)
.-+|.|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|++.-.-.. ..+.. . ....|... +.+
T Consensus 51 ~~~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~--~q~~d~~~~~~~~ 121 (548)
T PRK08978 51 AMAAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTD-A--FQEIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-C--CcccchhccccCc
Confidence 3445566544 34456777788999988 345688888999999999843322 11110 0 01111111 111
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--...+|+ +++++...+++|+..+.. .||+.|++-.
T Consensus 122 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 122 TKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 11234665 788888888889887766 5999999863
No 164
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=90.02 E-value=1.5 Score=46.16 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccccccCCchHhh--hcCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYK--RGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~~~~~d~~~--~g~g 253 (347)
-+|-|.|.+ .+.-.++++..|=|.+| ..-++..|...+.|+|+|.-.-. ..+... .....|... +.+-
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~---~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 53 HMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLG---GFQEADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCC---CCcccchhhhhhcce
Confidence 345555543 34456677777999998 34568888899999999973211 111110 001111111 1111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
--..+|. ++..+.+.+++|+..+.. +||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 124 KYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1123454 778888888888877777 899999985
No 165
>PRK07524 hypothetical protein; Provisional
Probab=89.93 E-value=2.8 Score=43.56 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.... ..+..........|.... .+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 3445555543 34446777778999988 345688888999999999844332 111100000001121111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
---..+|+ ++..+.+.+++|+..++. .||+.|++-
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 11124555 788999999999988876 699999886
No 166
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.89 E-value=2.3 Score=44.60 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|-|.|.+ .++-.++++..|=|.+| ..-++..|...+.|||+|+-.-...... .......|.... .+--
T Consensus 56 ~mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 355566544 34456788888999988 3456778888999999998543321100 001111222221 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-..+|+ +++++...+++|+..+.. .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 224565 788999999999887776 5999999864
No 167
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.44 E-value=2.8 Score=43.73 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|-|.|.+. +.-.++++..|=|.+|. .-++..|..-+.|||+|+-.................|.... ..--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 3455655443 34467777789999983 35688888999999999854432210000000111122111 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
...+|+ ++.++.+.+.+|+..+.. .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 235566 788888888888877765 5899999863
No 168
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.34 E-value=2.6 Score=44.21 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC---cccccccccccCCchHhhh--
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH---YGMGTAEWRAAKSPSYYKR-- 250 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~---~~~~~~~~~~~~~~d~~~~-- 250 (347)
.-+|-|.|. ..++-.+|++..|=|++| ..-.|..|..-+.|+|.|.-.-. .+....+ +.|....
T Consensus 52 a~mAdgyar---~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~afQ-----e~D~~~l~~ 120 (550)
T COG0028 52 AFAADGYAR---ATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQ-----EVDQVGLFR 120 (550)
T ss_pred HHHHHHHHH---HcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcchhh-----hcchhhHhh
Confidence 344556553 456778999999999998 34568899999999998864211 1111111 1232221
Q ss_pred cCCcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
.+--....|. +++++.+.+++|+..+.+ .||++|++-
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 1111224565 788999999999988877 489999884
No 169
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.19 E-value=2.8 Score=43.98 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcc
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVP 255 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gip 255 (347)
+|-|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|||+|+-.......... .....|.... .+---
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGED--AFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCCC--cccccchhhhhhcccee
Confidence 45566544 34456777888999998 345688888999999999854332110000 0111122111 11111
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
..+|+ ++..+.+++++|+..+.. .||+.|++-.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 24555 788888889888887766 5999999854
No 170
>PRK07586 hypothetical protein; Validated
Probab=89.13 E-value=2.7 Score=43.32 Aligned_cols=105 Identities=15% Similarity=-0.010 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|-|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-....... ......|.... .+-
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKY--DAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCC--Ccccccchhhhhcccc
Confidence 3345566543 34445677788999887 23457778889999999985433211000 00011122221 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...+|. ++..+.+.+++|+..+.. .||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 1123454 788888888888887776 5999999864
No 171
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=89.11 E-value=2.9 Score=44.31 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++..|..-++|+|+|+-.-.. .+.. ......|.... .+-
T Consensus 83 ~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~---~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 83 HAAEGYAQA---TGRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT---DAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CcCcccchhhhhhcce
Confidence 345566544 244556777789998883 45677888889999999844322 1111 00111122111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...+|+ ++..+.+.+++|+..++. .||+.|++-.
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 1124555 788888888888887766 5999999864
No 172
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.03 E-value=3.2 Score=43.63 Aligned_cols=103 Identities=21% Similarity=0.210 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.. .++-.++++..|=|.+| ..-++..|...+.|+|+|+-..... ... ......|.... .+-
T Consensus 66 ~mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~it 136 (570)
T PRK06725 66 HAAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIGK---DGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCcccccC---CCCcccchhhhhhccc
Confidence 356666654 34446777778999888 3456778888899999998432221 111 01111122211 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--..+|+ ++..+.+.+++|+..++. .||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 1124565 788899999999888877 6999999863
No 173
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=88.98 E-value=3.3 Score=43.60 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.+. +.-.++++..|=|++| ..-++..|...+.|+|+|+-.-.. .+... .....|.... .+-
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~---~~q~~d~~~l~~~~t 127 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG---GFQEAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC---CCcccchhhhhhhhe
Confidence 3455555443 3446777778999988 345677888899999999822111 11100 0001111111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
--..+|+ ++..+.+.+++|+..+.. .||+.|++-.
T Consensus 128 k~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 128 KYQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred eEEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 1124454 788888888888888877 8999999863
No 174
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=88.97 E-value=3.2 Score=43.46 Aligned_cols=104 Identities=22% Similarity=0.126 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.. .+.-.++++..|=|.+| ..-++..|...+.|||+|.-.-... .... .....|.... .+
T Consensus 56 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~i~~~~ 126 (572)
T PRK06456 56 AHAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKM---AFQEADAMGVFENV 126 (572)
T ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCC---Cccccchhhhhhcc
Confidence 3445565543 33445666678999998 3456788888999999997443221 1110 0011121111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ ++.++.+++.+|+..+.. .||+.|++-.
T Consensus 127 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 127 TKYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 11124554 788888888888887776 5999999863
No 175
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=88.97 E-value=4.4 Score=40.76 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh-hcCC
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~-~g~g 253 (347)
.+.+++|+++| +.++++..--.+++ ..+|.|.+|+-..+|+++++-|-..+- +........|+.. +..|
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~~~rd~g 131 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTISQRDTG 131 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHHhccccC
Confidence 46778888876 34555555444444 368999999999999998886654432 2221111123322 3344
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCC
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs 297 (347)
. +.+-..|+.++++-...|...+.+ .-|+++-...|+. +|+
T Consensus 132 ~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 132 W--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 3 223346899999988888888774 3699999999875 454
No 176
>PRK07064 hypothetical protein; Provisional
Probab=88.93 E-value=3.7 Score=42.60 Aligned_cols=106 Identities=19% Similarity=0.113 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-. ..+...........|.... .+-
T Consensus 55 ~~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 345566544 34446777778999998 34568888899999999985422 1111100000001122211 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...+|+ ++.++.+++++|+..+.. .||+.|++-.
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 1224565 678888888888877755 6999999863
No 177
>PRK11269 glyoxylate carboligase; Provisional
Probab=88.91 E-value=3.7 Score=43.29 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|.|.|.+.. ++-.++++..|=|.+|. .-++..|..-+.|+|+|+-+-......... ....|.... .+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccChhhHhhccee
Confidence 44555554320 34456777779999882 346778888999999998543321111100 111122111 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-..+|+ ++.++..++++|+..++. .||+.|++-.
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 124554 788888999999888876 5899999863
No 178
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=88.28 E-value=4 Score=42.57 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhh--hcCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~--~g~g 253 (347)
-+|.|.|... +.-.++++..|=|.+| ..-++..|..-+.|||+|+-.-.. .... ......|... +.+-
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGS---DAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC---CCCcccChhhhhcCcc
Confidence 3455665443 3445777788999888 345688888999999999853221 1110 0011112111 1122
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
.-..+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 2234565 678888888888877766 589999985
No 179
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=88.26 E-value=3.8 Score=42.89 Aligned_cols=104 Identities=21% Similarity=0.144 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|.|.|.+. +.-.++++..|=|.+|- .-++..|...+.|+|+|.-.-....... ......|.... .+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 34466666543 33456666778998883 4567788899999999974432211000 00011122111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
--..+|+ ++..+...+++|+..+.. .||+.|++-
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 1124554 788888889999887766 599999985
No 180
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.22 E-value=4.5 Score=42.90 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|.|.|.. .++-.++++..|=|++|. .-++..|..-+.|||+|+-+-.. .+... ...+.|.... ..
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~Qe~d~~~~~~~v 143 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD---AFQETDIFGITLPI 143 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---CcccccHHHHhhhc
Confidence 3445555543 344567777779999983 45688888999999999854221 11110 0111122111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ ++.++..++.+|+..+.. .||+.|++-.
T Consensus 144 tk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 144 VKHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 11124555 788888889998888776 4999998753
No 181
>PRK12474 hypothetical protein; Provisional
Probab=88.14 E-value=3.9 Score=42.31 Aligned_cols=104 Identities=18% Similarity=0.021 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|-|.|.+ .+.-.++++..|=|++| ..-++..|..-+.|||+|+-......... ......|.... ..--
T Consensus 57 ~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccc
Confidence 345565544 34456777788999887 23457778889999999985432211000 00001122221 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
....|+ ++.++.+++++|+..+.+ .||++|++-.
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 123454 788888889888877766 5999999864
No 182
>PRK08322 acetolactate synthase; Reviewed
Probab=88.10 E-value=4.2 Score=42.23 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|.|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-........ .....|.... .+-
T Consensus 51 ~~~A~gyar~---tg~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRL---TGKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSKQG--SFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHh---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccCCC--ccccccHHHHhhhhe
Confidence 3445566544 33445677777999888 345677888899999999844322110000 0111122111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--..+|+ ++..+.+.+.+|+..+.. .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 1124554 788888888888888776 5899999864
No 183
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=88.09 E-value=3.8 Score=42.97 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|.|.|.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.... .+... ..+ ..|.... .+
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-~~q--~~d~~~l~~~~ 136 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSD-AFQ--EADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Ccc--ccchhhhhhcc
Confidence 34566666543 3445677777999888 345677888899999999854332 11110 001 1121111 01
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-.-..+|. ++..+...+++|+..++. .||+.|++-.
T Consensus 137 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 137 TKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 11123444 788888888888887766 5999999864
No 184
>PLN02470 acetolactate synthase
Probab=88.09 E-value=3.4 Score=43.45 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.+. ++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.-... +.. ......|.... .+
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~ 134 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTRSI 134 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhhhh
Confidence 34466666543 3456777888999998 3456778888999999997443221 111 00111111111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--....|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 135 tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 135 TKHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred eEEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 11124554 788999999999988876 5999999863
No 185
>PRK08266 hypothetical protein; Provisional
Probab=88.01 E-value=4.8 Score=41.81 Aligned_cols=105 Identities=18% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccC-CchHhh--hcC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK-SPSYYK--RGD 252 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~-~~d~~~--~g~ 252 (347)
-+|.|.|.+. +.-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-.. .+.... .... ..|... +.+
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSF 129 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhh
Confidence 3566666443 3345667777999988 345688888999999999843221 111100 0000 012111 111
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--...+|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 130 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 130 TKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 11234565 677888888888877765 6999999864
No 186
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=87.76 E-value=4 Score=43.03 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|-|.|.+. .+.-.++++..|=|++| ..-++..|...+.|||+|+-.-......... ....|.... ..--
T Consensus 55 ~mAdgyaR~t--~g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~--~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRAT--AGNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHKED--FQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhc--CCCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCCc--ccccCHHHHhhhhce
Confidence 3444554331 03344566667888887 3456888889999999998443322111100 111122111 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-..+|. ++.++.+.+++|+..++. .||+.|++-.
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 124554 788888999999888766 5899999864
No 187
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=87.69 E-value=4.3 Score=42.58 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+ .+.-.++++..|=|++|. .-++..|...++|||+|+-.-.. .... ......|.... ..-
T Consensus 63 ~~Adgyar~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~Q~~d~~~l~~~vt 133 (578)
T PRK06112 63 AMADGYARV---SGKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDR---NAFQELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHH---hCCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCC---CCccccChhhhhcccc
Confidence 345566644 344566777778888873 45677888999999999844221 1110 00011111111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--...|+ ++..+.+.+++|+..++. .||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 1123554 678888888888877766 5899999864
No 188
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.64 E-value=4.3 Score=42.63 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhh--hcCCc
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~--~g~gi 254 (347)
+|-|.|. ..++-.++++..|=|.+| ..-++..|...+.|+|+|+-.-.. ..... .....|... +.+-.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk 123 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAV 123 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---Ccceechhhhhhhcce
Confidence 4455553 344556778888999888 345688888999999999854332 11110 001111111 11111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
-..+|. ++..+.+.+.+|+..+.. .||+.|++-..
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 113443 566777777777766666 89999998643
No 189
>PRK08617 acetolactate synthase; Reviewed
Probab=87.27 E-value=4.2 Score=42.37 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhh--hcCCc
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~--~g~gi 254 (347)
+|.|.|. ..++-.++++..|=|.+| ..-++..|..-+.|+|+|.-.... .+... .....|... +.+--
T Consensus 57 ~A~gyar---~tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~~---~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 57 MAAAIGR---LTGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLKR---THQSMDNVALFRPITK 127 (552)
T ss_pred HHHhHhh---hcCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCCC---Cccccchhhhhhhhcc
Confidence 3445443 334446677777999988 345677888899999999743221 11110 001111111 11111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
...+|+ +++++..++++|+..+.. .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 224565 788888888888887766 5899999863
No 190
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.19 E-value=5.6 Score=41.68 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccc-ccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~-~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.+.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-.... ... .......|.... .+-
T Consensus 61 ~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~~~q~~d~~~~~~~~t 133 (569)
T PRK09259 61 NAAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQ-QGDYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCccccccc-CCCccccchhhhhhhhe
Confidence 345555544 234456777779999883 4568888899999999985432211 000 000111122111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
-....|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 134 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 134 KAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 1124555 788888888888877766 689999986
No 191
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.18 E-value=4.8 Score=42.19 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|+|+|.-.-... ... ......|.... .+-
T Consensus 56 ~mAdgyar~---tg~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~---~~~q~~d~~~l~~~vt 126 (574)
T PRK06882 56 HMADGYARS---TGKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGT---DAFQECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHh---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---Ccccccchhhhhhccc
Confidence 345555543 234456777779998883 356778888999999998443321 111 00111121111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...+|. ++.++...+++|+..+.. .||+.|++-.
T Consensus 127 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 2234565 788888888888877765 5999999864
No 192
>PRK05858 hypothetical protein; Provisional
Probab=87.10 E-value=5.2 Score=41.65 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc---ccccccccccCCchHhhhcC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRGD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~---~~~~~~~~~~~~~d~~~~g~ 252 (347)
.-+|-|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-.. +....++. ....+. +.+
T Consensus 55 ~~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~--d~~~l~-~~~ 125 (542)
T PRK05858 55 AFAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEI--DHVPFV-APV 125 (542)
T ss_pred HHHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCccc--chhhhh-hhh
Confidence 3445666544 33445666677888887 345688888999999988744322 11111110 001111 111
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ ++..+.+.+.+|+..+.. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 126 TKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred hceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 11124554 677888888888877755 6899999853
No 193
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=87.02 E-value=5.4 Score=41.63 Aligned_cols=103 Identities=18% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|||+|.-.-......... ..+.|.... .+--
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~l~~~~tk 131 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFREREA--FQEIDYRRMFGPMAK 131 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCCc--ccccCHHHhhhhhhc
Confidence 345565544 34456677777999988 3456888888999999998432211100000 011121111 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
-..+|. ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 132 ~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 132 WVAEID--DAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 123453 788888888888887766 589999886
No 194
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=86.98 E-value=5.9 Score=41.72 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|.|.+.+. +.-.++++..|=|.+| ..-++..|..-+.|||+|+-.-... ... ......|.... ..
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~ 121 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIGN---DAFQEIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC---CCCccccHhhHHhhh
Confidence 34455665442 3446677777999988 3456888889999999997432211 110 00011121111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ ++.++..++.+|+..+.. .||+.|++-.
T Consensus 122 tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 122 TKHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred cceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 11224555 778888889898888766 5899999863
No 195
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=86.94 E-value=5.8 Score=41.24 Aligned_cols=103 Identities=16% Similarity=0.070 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh--hcCCcc
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~--~g~gip 255 (347)
+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-...... .......|... +.+---
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 45555533 34456777888999988 3456778889999999998532211100 00111112111 111111
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
..+++ +++++.+.+.+|+..+.. .||+.|++-.
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 13444 788888888888877766 5899999864
No 196
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=86.93 E-value=3.3 Score=41.18 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=63.4
Q ss_pred cccchhHHHHHHHHHHHhCCCCceEEEEeCCccccc-chHHHHHHHHHHcCCCeEEEEecCCc-ccc-cccccccC--Cc
Q 019023 171 IVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNHY-GMG-TAEWRAAK--SP 245 (347)
Q Consensus 171 ~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~-~~~~~~~~--~~ 245 (347)
.=|.++++|+|+.+|- +++.++++-.-++.. =...-+|+....+++|++++|-.-+. +.- .++..... .+
T Consensus 34 ~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~ 108 (361)
T TIGR03297 34 NEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITL 108 (361)
T ss_pred CchHHHHHHHHHHHhc-----CCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHH
Confidence 3567788888888872 334444432222211 00122233356789999999866654 321 12111000 01
Q ss_pred hHhhhcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 246 SYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 246 d~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
.+- ...++|...++ .+.++..+++..|.+++.+ ++|+.|-+.
T Consensus 109 ~lL-~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 109 SLL-DALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHH-HHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 111 24789888884 2556777778888877777 999887765
No 197
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.91 E-value=4.1 Score=43.06 Aligned_cols=105 Identities=16% Similarity=0.088 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++..|...+.|+|+|.-.-...... .......|.... .+-
T Consensus 62 ~~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhhe
Confidence 3445566543 344467777789999883 356778888999999998543321100 011111121111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--..+|+ ++.++...+.+|+..++. .||+.|++-.
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 1124555 788999999999988877 5999998853
No 198
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=86.75 E-value=6.2 Score=39.86 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh-hcCC
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDY 253 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~-~g~g 253 (347)
.+.+++|++++ +.++++..--.+++ ..+|.|.+|+-..+|+++++.+-...- +.......+|+.. +.-|
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~~r~~g 137 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYLSRDSG 137 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHHHhcCC
Confidence 36678888876 34566655544554 368999999999999888887776431 1222222334432 4345
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEec
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYR 292 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R 292 (347)
+ +...-.++.++++.+..|.+.+.+ .-|+++-...++
T Consensus 138 ~--ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 138 W--ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred e--EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence 4 445666899999999899887754 579999888875
No 199
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=86.20 E-value=5.4 Score=41.85 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.. .+.-.++++..|=|.+| ..-++..|..-+.|||+|.-.... .+... .....|.... .+
T Consensus 61 ~~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~i 131 (566)
T PRK07282 61 LHEAEGYAKS---TGKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCC
Confidence 3445565543 34456777778999988 345677888889999999854322 12111 0001111111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-.-..+|+ ++.++.+++.+|+..++. .||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 11124555 678888888888888776 5999999854
No 200
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.64 E-value=5.5 Score=41.81 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.+. +.-.++++..|=|.+|. .-++..|...+.|||+|.-.-... ... ......|.... ..
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 125 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGN---DAFQECDMIGISRPV 125 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhHHhhhc
Confidence 34566666543 44556777779998883 345778888899999987432221 110 01111121111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 126 VKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 11124565 788888889999888766 5999999753
No 201
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=85.15 E-value=6.6 Score=41.35 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-cccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.. .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-. +.+... .....|.... .+-
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~t 135 (585)
T CHL00099 65 HAADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD---AFQEVDIFGITLPIV 135 (585)
T ss_pred HHHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---CccccchhhhhcCce
Confidence 345555533 344566777779999883 3567788889999999984322 111110 0011122111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...+|+ ++..+.+++++|+..++. .||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 136 KHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 1124565 788899999999887766 5899999753
No 202
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=84.83 E-value=7.6 Score=34.24 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHH-HHHHHc--------CCCeEEEEecCCcccccccccccCCch
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~--------~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
+++|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++...+. ....+
T Consensus 57 vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t---hs~~~ 126 (167)
T cd07036 57 VGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ---HSQSL 126 (167)
T ss_pred HHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh---hhhhH
Confidence 4556666653 344554333334433 344544 334443 5999999865554422221 11222
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
.. .--.+|++.| .=.|+.+.+.+++.++++ ++|+++-
T Consensus 127 ~a-~lr~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 127 EA-WFAHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred HH-HHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 21 1123555443 334788889999888864 8999874
No 203
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=84.83 E-value=8 Score=40.44 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.+.+. ++-.++++..|=|.+|. .-++..|..-+.|||+|.-.-... +.. ......|.... ..
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 128 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIGN---DAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhhccCc
Confidence 34555665443 44567777789999883 456888888999999887332211 100 00111122111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
--...+|. ++.++.+.+++|+..++. .||+.|++-
T Consensus 129 tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 129 TKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred ceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 11123454 778888888888877766 599999985
No 204
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=84.44 E-value=3.7 Score=43.06 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccc-ccc---ccc--ccCC-chHhh
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTA---EWR--AAKS-PSYYK 249 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~-~~~---~~~--~~~~-~d~~~ 249 (347)
-+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|||+|+-+-.... ... ... .... .|...
T Consensus 64 ~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 345555543 33446677778999988 34568888899999999986543211 100 000 0111 12111
Q ss_pred h--cCCcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 250 ~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
. ..--...+|+ +++.+..++.+|+..+.. .||+.|++-
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 1 1111113455 788888999999888765 699999986
No 205
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=84.24 E-value=7.1 Score=40.71 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-ccccc--ccccCCc-hHhhh--c
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAAKSP-SYYKR--G 251 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~--~~~~~~~-d~~~~--g 251 (347)
+|-|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|||+|.-+.... ..... ..+.... +.... .
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 35555543 344567788889999983 356888889999999998553321 11100 0010001 11111 1
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
.---..+|. ++..+.+++++|+..+.. .||+.|++-.
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 111113443 556666666666665555 7899999864
No 206
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.11 E-value=7.9 Score=40.52 Aligned_cols=104 Identities=20% Similarity=0.138 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++..|...+.|+|+|.-.-.. .... ......|.... .+
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~~ 124 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLIGT---DAFQEIDAVGISRPC 124 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhhhhhcc
Confidence 3445555533 344567777779999883 35677888899999998732111 0100 00111111110 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
---..+|+ +++++.+++++|+..++. .||+.|++-.
T Consensus 125 tk~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 125 VKHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred cceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 11123454 889999999999988876 5899999863
No 207
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=83.96 E-value=6.5 Score=41.50 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.+. +.-.++++..|=|++|. .-++..|..-+.|+|+|+-.=.. .+.. ......|.... ..-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~vt 126 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAALGG---HYQQEVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhcCC---CCCCccCHHHHHHHHH
Confidence 3455655443 34456777779999883 45677888899999999843211 1110 00111111110 011
Q ss_pred -cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 254 -VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 254 -ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
--..+|+ +++.+.+.+++|+..+.. .||+.|++-.
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 1124565 677888888888887767 8999998864
No 208
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=83.71 E-value=6.7 Score=41.51 Aligned_cols=107 Identities=20% Similarity=0.215 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHc--CCCeEEEEecCCcccccccccccCCchHhhhcCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~g 253 (347)
+.+++|+++| +.++++..--.+++ ...|.|..++.. .+|+++++-|. -+-+.. .....+.++.+-.+
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~~~--~~~q~d~~~~~~~~ 127 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMHSS--QNEQDTRHYAKFAK 127 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCccc--hhhHhHHHHHHhcC
Confidence 5577888876 34455555444444 245767666633 56677666553 222111 11112224444456
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
+|.+ +=.|+.++++...+|.+.+.+ +-|++|-..+ .-+|+
T Consensus 128 ~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~ 168 (595)
T TIGR03336 128 IPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM 168 (595)
T ss_pred CeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence 6644 444899999999999999888 9999999976 44555
No 209
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.11 E-value=11 Score=39.84 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.+. +.-.++++..|=|.+|. .-++..|...+.|||+|.-.=.. ..+. ......|.... -+-
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~it 143 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQECDTVGITRPIV 143 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCcccccHHHHhcCCc
Confidence 3566666543 34456777778888883 35677788889999998733211 1110 00111121111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
--..+|. ++.++.+.+.+|+..++. .||+.|++-.
T Consensus 144 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 144 KHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 1124555 778888888888887776 5899999864
No 210
>PRK06154 hypothetical protein; Provisional
Probab=83.10 E-value=7.6 Score=40.78 Aligned_cols=91 Identities=23% Similarity=0.168 Sum_probs=54.9
Q ss_pred CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhhcCCcceEEecCCCHHHHHHH
Q 019023 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270 (347)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~g~gipg~~VDG~D~~av~~a 270 (347)
-.++++..|=|.+| ..-++..|..-+.|||+|+-..... ...... ....... +..---..+|+ ++.++.+.
T Consensus 82 ~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~-~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 82 VGVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVAPN--FESLRNY-RHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred CEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCCCC--cchhhhH-hhcceeEEECC--CHHHHHHH
Confidence 34555667999888 3456888889999999998443221 111000 0001111 11111124555 78888888
Q ss_pred HHHHHHHhcc--CCCEEEEEEE
Q 019023 271 CKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 271 ~~~A~~~ar~--~gP~lIe~~t 290 (347)
+++|+..+++ .||+.|++-.
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHhcCCCceEEEecch
Confidence 8888887766 6999999864
No 211
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=83.00 E-value=10 Score=39.76 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|-|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+|.-+-... .+.. .....|.... ..-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~Q~~d~~~l~~~it 125 (574)
T PRK09124 55 FAAGAEAQL---TGELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSG---YFQETHPQELFRECS 125 (574)
T ss_pred HHHHHHHHh---hCCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---CccccChhhhcccce
Confidence 345566544 23334444456888887 2345777888899999998543321 1110 0111121111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
--...|+ ++..+.+.+++|+..+.. .||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1113454 677777777777766666 799999974
No 212
>PTZ00089 transketolase; Provisional
Probab=82.90 E-value=8.9 Score=41.23 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=68.4
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
..|+-.+. +.+|.|+|.. +.-.++++.+. .|.+ -.++.+.+++..+|||+||+...+.+.+..-....+..|
T Consensus 407 ~~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~ied 479 (661)
T PTZ00089 407 RFGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVET 479 (661)
T ss_pred eeeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHH
Confidence 34554443 3566677751 12256666664 6766 788889999999999999998888765332111112223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
++-. -.+|.+.| .=-|..++..+++.|+.. .++|+.|-+
T Consensus 480 ia~l-R~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 519 (661)
T PTZ00089 480 LALL-RATPNLLVIRPADGTETSGAYALALAN--AKTPTILCL 519 (661)
T ss_pred HHHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 3321 13555443 223788888888888742 379998865
No 213
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=82.36 E-value=12 Score=40.00 Aligned_cols=110 Identities=12% Similarity=0.177 Sum_probs=62.2
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHH-HHHHHcCCCeEEEEecCCcccccccccccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
..|+-.++ +++|+|+|+. .-++++++ =+.|-+ ..+|-+ +.++..++||++++...++. +..-.......
T Consensus 356 d~GIaEq~~vg~AaGlA~~-----G~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~ 426 (617)
T TIGR00204 356 DVAIAEQHAVTFAAGMAIE-----GYKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAF 426 (617)
T ss_pred cCCccHHHHHHHHHHHHHC-----CCEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccch
Confidence 34444443 3567777652 23445554 456655 455544 66789999999998877763 11111111122
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
|++-. -.+|+++| .=.|+.++..+++.|++. .++|++|-..
T Consensus 427 dia~l-r~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~~ 468 (617)
T TIGR00204 427 DISYL-RCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRYP 468 (617)
T ss_pred HHHHH-hcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEEc
Confidence 32221 24666544 223788888888888752 2599988543
No 214
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=82.03 E-value=17 Score=31.94 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=59.2
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccc-cchHHHHHH-HHHHcCCCeEEEEecCCcccccccccccCCc
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn-~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
.|+-..+ +++|+|+|++-+ ...+++..++|=... |-..++.+. ..+.+++|+. |+..-+++.+..........
T Consensus 53 ~gIaE~~~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~ 128 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIE 128 (178)
T ss_dssp --S-HHHHHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSS
T ss_pred cCcchhhccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccc
Confidence 3444333 466777776531 123455555543330 123455555 7788999998 66554443322111111222
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
+..-. -.+|+++| .=.|+.++..+++.|++. . ++|++|-..
T Consensus 129 d~~~~-~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 129 DEAIL-RSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHHHH-HTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccc-ccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 32221 13555543 334788999999999873 3 799988653
No 215
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=80.92 E-value=12 Score=40.13 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=63.4
Q ss_pred cccccchh-HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQI-PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~~-p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-...+ .+|.|+|+. +.-.++++.+ ..|.+ ..++++.+++..++||++|....+++.+.......+-.|+
T Consensus 401 ~GIaEq~mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedi 473 (653)
T TIGR00232 401 YGVREFAMGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQL 473 (653)
T ss_pred ecccHHHHHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHH
Confidence 35444433 556666652 1123344333 35554 5678899999999999999988777644321111112233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+-. -.+|++.| .=-|..++..+++.|++. .++|++|-+
T Consensus 474 a~l-r~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl 512 (653)
T TIGR00232 474 ASL-RAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALIL 512 (653)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEE
Confidence 221 13444433 223778888899888841 389998854
No 216
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=80.73 E-value=15 Score=38.74 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|-|.|.+. ++-.+|++..|=|.+|. .-++..|..-+.|+|+|.-+-........ .....+.... .+--
T Consensus 55 ~mAdgyar~t---gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~Qe~d~~~l~~~~tk 126 (578)
T PRK06546 55 FAAAAEAQLT---GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSG--FFQETHPDRLFVECSG 126 (578)
T ss_pred HHHHhHHHhh---CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCC--CccccChhhhccccee
Confidence 3455555432 33345555668888872 34577788889999999753221100000 0001111110 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
-...|. ++..+.+.+.+|+..+.. .||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 123555 677888888888877767 8999999863
No 217
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=80.32 E-value=14 Score=39.53 Aligned_cols=109 Identities=22% Similarity=0.289 Sum_probs=62.9
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHH-HHHHHcCCCeEEEEecCCcc-cccccccccCC
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYG-MGTAEWRAAKS 244 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~ 244 (347)
..|+-.+. +++|.|+|+. .-++++.++. .|.+ ..++.+ +.++..++||+|++..-++. ...+ .....
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~--THq~~ 434 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGA--THAGA 434 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCc--ccccc
Confidence 44555544 3557777752 2345555554 4655 456666 66889999999998655542 1111 11112
Q ss_pred chHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 245 ~d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
.|++-. -.+|++.| -=.|..+++.+++.|+++ .++|++|-..
T Consensus 435 ~dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 435 FDLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 232221 23565543 223788889999888862 3799998654
No 218
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=79.10 E-value=11 Score=40.47 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=58.4
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
..|+-.+. +++|+|+|+. .-+++++++ +.|.+-.+-+-.+.++..++||+|++...++. +..........|
T Consensus 403 dvGIAEq~~Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~-g~dG~TH~~~~D 474 (641)
T PLN02234 403 DVGIAEQHAVTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLM-GADGPTHCGAFD 474 (641)
T ss_pred CCCcCHHHHHHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccC-CCCCccccccHH
Confidence 34444443 3556666653 234555554 34544223334467789999999999776642 110001111223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMIL 286 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lI 286 (347)
..-. -.+|++.| .=.|+.++..+++.|... .++|++|
T Consensus 475 ia~l-r~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i 512 (641)
T PLN02234 475 VTFM-ACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF 512 (641)
T ss_pred HHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE
Confidence 2211 13566544 223778888888887652 3689988
No 219
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=78.69 E-value=7.5 Score=39.27 Aligned_cols=46 Identities=28% Similarity=0.337 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec
Q 019023 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (347)
Q Consensus 178 ~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N 229 (347)
+|-|.|.+ .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~ 98 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTAD 98 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCC
Confidence 45555543 34556777778899888 345677888889999999744
No 220
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=78.61 E-value=17 Score=37.70 Aligned_cols=105 Identities=15% Similarity=0.066 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh--hcCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~--~g~gi 254 (347)
-+|.|.|.+ .+...++++..|=|..| ..-++..|..-+.|+|+|+-.-.+........+ ...|... +.+--
T Consensus 62 ~~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk 134 (530)
T PRK07092 62 GMADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVK 134 (530)
T ss_pred HHHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhccccc
Confidence 356666644 34455666677888886 345688888899999988754332111000000 0111111 01111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-...| .++..+.+.+.+|+..++. .||+.|++-.
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 135 WSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred ceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 11344 3688888888888887766 5899999863
No 221
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=78.41 E-value=14 Score=37.70 Aligned_cols=96 Identities=24% Similarity=0.234 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccccccCCchHhh--hc---C
Q 019023 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEWRAAKSPSYYK--RG---D 252 (347)
Q Consensus 179 a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~~~~~~~d~~~--~g---~ 252 (347)
|-|.|.+ .++..+|++..|-|++|- ..-|.-|-.-+.|++.+-- --.-+|++. .+.+.|... |. |
T Consensus 145 AegYaR~---sgKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvftGQVptsaIGtD---AFQEadiVgisRScTKw 215 (675)
T KOG4166|consen 145 AEGYARS---SGKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFTGQVPTSAIGTD---AFQEADIVGISRSCTKW 215 (675)
T ss_pred hhhhhhh---cCCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEecccchhhcccc---hhccCCeeeeeecccee
Confidence 4455544 356789999999999982 3346666677899765531 111122221 111112111 11 2
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (347)
.+ -| .|++++-.-+.+|.+.+-+ .||+||++
T Consensus 216 Nv---mV--kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NV---MV--KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred he---ee--ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 22 23 3788898889999888866 78999987
No 222
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=77.83 E-value=12 Score=40.39 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=62.1
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccc-cccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-RAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~-~~~~~~ 245 (347)
..|+-.+. +.+|+|+|.. .-+++++++. .|.+=.+-+-.+-++..++||+|++..-++ ..... ......
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGl--vg~DG~TH~g~~ 497 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGL--VGSDGPVQCGAF 497 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCcc--CCCCCccccccH
Confidence 34555443 3556777643 2367778884 676523333445578999999999876443 21111 111122
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|++-. -.+|+++| -=.|..+++.+++.|... .++|++|-.
T Consensus 498 Dia~l-r~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~ 538 (701)
T PLN02225 498 DIAFM-SSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRF 538 (701)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 33211 13565544 223788888888887741 379999755
No 223
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=77.46 E-value=22 Score=35.39 Aligned_cols=109 Identities=21% Similarity=0.164 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccc-ccccccccCCchH-hhhc
Q 019023 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSY-YKRG 251 (347)
Q Consensus 174 ~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~-~~~~~~~~~~~d~-~~~g 251 (347)
+.+..++|+++|- -+..-...|.|-.- .+|++-+|+-..+|+++++.+....- +-+... ...|+ ..+-
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHHc
Confidence 4477888888773 23444555555544 58999999999999998887776521 111111 11122 2232
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (347)
-|++-+... |+.+.+.-.-.|...+.+ .-|+++-..-++..
T Consensus 128 ~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 128 TGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred cCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 355545444 777777766777777766 88999887777654
No 224
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=77.46 E-value=9.1 Score=40.69 Aligned_cols=77 Identities=27% Similarity=0.347 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhh-hc-CCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEE
Q 019023 209 LFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMIL 286 (347)
Q Consensus 209 ~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~-~g-~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lI 286 (347)
..-++.+|++.++|++||..-..++.+.-....-+...++. |+ .++..++-- |..+...|.+.|+++ +++|++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~--~~gPt~L 516 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER--KDGPTAL 516 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc--CCCCeEE
Confidence 34579999999999999999999877543222222223333 34 344334321 455778888888873 4999988
Q ss_pred EEE
Q 019023 287 EMD 289 (347)
Q Consensus 287 e~~ 289 (347)
-+.
T Consensus 517 ilt 519 (663)
T COG0021 517 ILT 519 (663)
T ss_pred EEe
Confidence 664
No 225
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=77.32 E-value=15 Score=37.85 Aligned_cols=97 Identities=24% Similarity=0.201 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEe-CCcccccchHHHHHHHHH--------HcCCCeEEEEecCCccc-ccccccccCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGM-GTAEWRAAKSP 245 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~Ealn~Aa--------~~~LPvi~vv~NN~~~~-~~~~~~~~~~~ 245 (347)
+++|+|+|++ .-++++.++ .+-.. + .+-+-.|-++ .+++||+|+..|..... +.+ ....
T Consensus 202 vg~AaGlA~~-----G~rPiv~~~~~~f~~-r-a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~h----hs~~ 270 (464)
T PRK11892 202 AGIGVGAAFA-----GLKPIVEFMTFNFAM-Q-AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQ----HSQD 270 (464)
T ss_pred HHHHHHHHhC-----CCEEEEEEehHHHHH-H-HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCc----cccC
Confidence 4667777764 234555554 22221 1 2333446667 88999999988766522 221 1111
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
+. +.--.+|+++| -=.|+.+.+..++.|++ .++|++|-
T Consensus 271 d~-a~~~~iPgl~V~~P~d~~d~~~ll~~ai~---~~~Pv~il 309 (464)
T PRK11892 271 YA-AWYSHIPGLKVVAPYSAADAKGLLKAAIR---DPNPVIFL 309 (464)
T ss_pred HH-HHHhhCCCCEEEEeCCHHHHHHHHHHHhh---CCCcEEEE
Confidence 22 11124666544 22377788888888875 38899874
No 226
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=77.17 E-value=4 Score=25.75 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 319 DPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+++..+++ |.+.|++|++|..+.+++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHH
Confidence 45666666 5779999999999988764
No 227
>PRK12754 transketolase; Reviewed
Probab=75.97 E-value=18 Score=38.96 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=66.2
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|.|+|+- +.-.+.++.+ ..|.+ ..++++.+++..++||++|....+++.+..-....+-.|+
T Consensus 407 ~GIaE~~Mv~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdl 479 (663)
T PRK12754 407 YGVREFGMTAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (663)
T ss_pred eccchhhHHHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHH
Confidence 4544444 3566677752 1123344444 35655 7889999999999999999988887664321111122244
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+-. -.+|.+.| .=-|..++..+++.|+++ .+||+.|-+
T Consensus 480 a~l-R~iPn~~V~~PaD~~E~~~~~~~a~~~--~~gP~yirl 518 (663)
T PRK12754 480 ASL-RVTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 518 (663)
T ss_pred HHH-hcCCCcEEecCCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 321 13455433 223778888888888862 379997655
No 228
>PRK12753 transketolase; Reviewed
Probab=75.30 E-value=23 Score=38.14 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=67.7
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|.|+|.- +.-.++++.+. .|.+ ..++.+.+++..++||+||....+++.+.--....+..|+
T Consensus 407 ~GIaEq~mv~~aaGlA~~----~G~~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedl 479 (663)
T PRK12753 407 YGVREFGMTAIANGIAHH----GGFVPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQL 479 (663)
T ss_pred eeecHHHHHHHHHHHHHh----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHH
Confidence 4544443 4667777751 11244555553 6665 7899999999999999999988887764321111122233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
+-. -.+|.+.| .=-|..++..+++.|++. .++|+.|-+.
T Consensus 480 a~l-R~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl~ 519 (663)
T PRK12753 480 ASL-RLTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALILS 519 (663)
T ss_pred HHH-hcCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 321 13454433 223677888888888862 2799887653
No 229
>PLN02573 pyruvate decarboxylase
Probab=75.20 E-value=19 Score=37.89 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccc--cccccCCchHh---h-
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSPSYY---K- 249 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~--~~~~~~~~d~~---~- 249 (347)
-+|-|.|.+ .+ -.++++..|=|+++- .-++..|..-+.|||+|+-.-... .... .......+++. .
T Consensus 68 ~mAdgyaR~---tg-~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARA---RG-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHH---hC-CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 345555543 34 567888889998882 345777888899999998543321 1110 00000001110 0
Q ss_pred -hcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 250 -RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 250 -~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
+...--..+|. ++..+.+.+++|+..+.. .||+.|++-.
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 01111123454 677777778888777766 7899999853
No 230
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=75.18 E-value=18 Score=39.07 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=61.9
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHH-HHHHHHHcCCCeEEEEecCCcccccccccccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
..|+-.+. +.+|+|+|+. + -+++++++. .|.+ ..++ -.+.++..++||+|++...++.. ..........
T Consensus 402 dvGIAEq~~vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~vg-~dG~TH~~~~ 472 (677)
T PLN02582 402 DVGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAF 472 (677)
T ss_pred ccCcCHHHHHHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCccc-CCCCcccccH
Confidence 34554443 3556666653 2 356666654 5554 3444 55777899999999988766521 1001111122
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|++-. -.+|++.| .=.|..+++.+++.|+.. .++|++|-.
T Consensus 473 Dia~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~ 513 (677)
T PLN02582 473 DVTYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY 513 (677)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 33211 13555443 223778888888888852 269998854
No 231
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=74.86 E-value=32 Score=34.12 Aligned_cols=98 Identities=20% Similarity=0.170 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEe-CCcccccchHHH-HHHHHHHcC--------CCeEEEEecCCcccccccccccCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFE-ALNIAALWD--------LPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~E-aln~Aa~~~--------LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
+++|+|+|++- .+++++++ .|=. + ..+| -.+-++.++ +||+|++.+ +...+. ...+...
T Consensus 87 vg~AaGlA~~G-----~~P~v~~~~~~f~--~-ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~--G~tH~~~ 155 (356)
T PLN02683 87 TGIGVGAAYAG-----LKPVVEFMTFNFS--M-QAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGV--GAQHSQC 155 (356)
T ss_pred HHHHHHHHHCC-----CEEEEEEehhhHH--H-HHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCC--CCccccC
Confidence 45677777642 24455443 3222 2 2333 346666666 999999877 432221 1111111
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+.+-. -.+|+++| .=.|..+++.+++.|++ .++|++|-.
T Consensus 156 ~~a~l-r~iPnl~V~~Pad~~e~~~~l~~a~~---~~gPv~ir~ 195 (356)
T PLN02683 156 FAAWY-SSVPGLKVLAPYSSEDARGLLKAAIR---DPDPVVFLE 195 (356)
T ss_pred HHHHH-hcCCCCEEEEeCCHHHHHHHHHHHHh---CCCcEEEEE
Confidence 22111 13555543 22378888888888875 389999853
No 232
>PLN02790 transketolase
Probab=73.02 E-value=29 Score=37.35 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=63.6
Q ss_pred cccccch-hHHHHHHHHHHHhCC-CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~-~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
.|+-.+. +.+|.|+|.. + .-.++++.+. .|.. ..++++.+++..++||+||....+.+.+..-....+-.|
T Consensus 397 ~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~ied 469 (654)
T PLN02790 397 FGVREHGMGAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEH 469 (654)
T ss_pred eeechHHHHHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHH
Confidence 4554444 3566676652 1 1234444331 3332 467788999999999999998887764321111111223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
++-. -.+|.+.| .=-|..++..+++.|+.. .++|+.|-+
T Consensus 470 la~l-R~iPnl~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 509 (654)
T PLN02790 470 LASL-RAMPNILMLRPADGNETAGAYKVAVTN--RKRPTVLAL 509 (654)
T ss_pred HHHh-cCCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 3221 13555444 223778888888888752 279988755
No 233
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=72.99 E-value=20 Score=34.77 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=64.8
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHH-HHcCCCeEEEEecCCcccccccccccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
+.|+..+. ++.|+|+|++-| .+.++-+ +.|.++-.||=+.++ +..+|||.+|+.+-++..+..........
T Consensus 53 NvGIaEQ~mvg~AAGLA~~Gk-----~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~E 125 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAGK-----KPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALE 125 (312)
T ss_pred ecchHHHHHHHHHHHHHhcCC-----Cceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHH
Confidence 45666654 477888887642 3444444 578777788866555 56699999999998864432111111122
Q ss_pred hHhh-hcCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYK-RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~-~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|++= |+ +|-.. +.=.|..++++++..+.++ +||+.+-+
T Consensus 126 DiaimR~--lpn~~V~~P~D~v~~~~i~~~~~~~---~GP~Y~Rl 165 (312)
T COG3958 126 DIAIMRG--LPNMTVIAPADAVETRAILDQIADY---KGPVYMRL 165 (312)
T ss_pred HHHHHhc--CCCceEEccCcHHHHHHHHHHHHhc---CCCEEEEe
Confidence 3332 33 33332 2334666777777666654 99987644
No 234
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=70.57 E-value=27 Score=37.08 Aligned_cols=104 Identities=17% Similarity=0.272 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhhcC--
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGD-- 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~g~-- 252 (347)
+..|.|+|.+ .-+++++++. .|-|=..-+-+.=.+..+|||+|+++-.+. |...++... .++.+|
T Consensus 371 VT~AAGlA~~-----G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G-----~fDls~l~ 438 (627)
T COG1154 371 VTFAAGLAAE-----GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG-----LFDLSFLR 438 (627)
T ss_pred HHHHHHHHhC-----CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc-----HHHHHHHh
Confidence 4555555543 3467888883 343323344445566889999999987775 443322211 122221
Q ss_pred CcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 253 gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
-+|.+.| -=.|..++++.+.+|..+ ..+|+.|-. .|..|
T Consensus 439 ~iPnmvi~aP~de~el~~ml~ta~~~--~~gP~AiRy--Prg~~ 478 (627)
T COG1154 439 CIPNMVIMAPRDEEELRQMLYTALAQ--DDGPVAIRY--PRGNG 478 (627)
T ss_pred cCCCcEEecCCCHHHHHHHHHHHHhc--CCCCeEEEe--cCCCC
Confidence 3666554 334788999999999875 358998743 34433
No 235
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.52 E-value=26 Score=37.14 Aligned_cols=108 Identities=11% Similarity=0.123 Sum_probs=61.5
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHH-HHHHHHHcCCCeEEEEecCCcccccccccccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
..|+-.+. +.+|+|+|+. + -+++++.+.+ |.+ ..++ -.+-++..++||+|++..-++....++ .....
T Consensus 324 d~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~-ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~T--H~~~~ 393 (581)
T PRK12315 324 DVGIAEQESVAFASGIAAN----G-ARPVIFVNST--FLQ-RAYDQLSHDLAINNNPAVMIVFGGSISGNDVT--HLGIF 393 (581)
T ss_pred CCCchHHHHHHHHHHHHHC----c-CeEEEEeeHH--HHH-HHHHHHHHHHHhcCCCEEEEEECCcccCCCcc--ccccH
Confidence 34554443 3556677652 2 3556666654 433 2334 455578899999999986555321111 11122
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|++-. -.+|++.| -=-|..++..+++.|+.. .++|++|-.
T Consensus 394 Dia~l-r~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 394 DIPMI-SNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred HHHHH-hcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 33221 23566544 334788889999888852 269999865
No 236
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.31 E-value=44 Score=35.25 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=61.4
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHH-HHHHHHHcCCCeEEEEecCCcccccccccccCCc
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
..|+-.++ +++|.|+|+. + -++++..+ ..|.+ ..+| -.+.++..++|+++++...++. +..........
T Consensus 325 ~~GIaE~~mvg~A~GlA~~----G-~~p~~~~f--~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~-g~dG~tH~~~e 395 (580)
T PRK05444 325 DVGIAEQHAVTFAAGLATE----G-LKPVVAIY--STFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLV-GADGPTHQGAF 395 (580)
T ss_pred CCChHHHHHHHHHHHHHHC----C-CeeEEEee--HHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcC-CCCCccccccH
Confidence 34444443 3557777762 2 34444444 45654 4556 4555789999999999766652 11000111122
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
|++-. -.+|++.| .=-|+.++..+++.|++. .++|++|-.
T Consensus 396 dia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~ 436 (580)
T PRK05444 396 DLSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRY 436 (580)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEe
Confidence 33221 13555433 334788899999998862 379998855
No 237
>PRK05899 transketolase; Reviewed
Probab=67.38 E-value=47 Score=35.35 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=63.1
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccccc--ccccccCCc
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSP 245 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~--~~~~~~~~~ 245 (347)
.|+-.++ +++|+|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++.+. ++. + ...
T Consensus 372 ~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~e 442 (624)
T PRK05899 372 YGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVE 442 (624)
T ss_pred eChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHH
Confidence 3444433 3556666643 2134444433 3554 467888999999999999999877764321 111 1 111
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (347)
|+.-. -.+|+++| .=-|+.++..+++.|++ . ++|++|-.
T Consensus 443 dia~~-r~iP~~~V~~P~d~~e~~~~l~~a~~---~~~~P~~ir~ 483 (624)
T PRK05899 443 QLASL-RAIPNLTVIRPADANETAAAWKYALE---RKDGPSALVL 483 (624)
T ss_pred HHHHH-HhCCCcEEEeCCCHHHHHHHHHHHHH---cCCCCEEEEE
Confidence 22211 13555443 23478888899988886 4 79998876
No 238
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=65.83 E-value=22 Score=42.46 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-c--ccccccccCCchHhhhcCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-M--GTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~--~~~~~~~~~~~d~~~~g~g 253 (347)
-+|.|.|.+ .++..+++|..|=|.+| ..-++..|..-+.|+|+|+-+-... . +..+.. ....+++ .+-
T Consensus 353 fmAdGyAR~---TgkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~i--Dq~~lf~-pvt 423 (1655)
T PLN02980 353 FHALGYARG---SLKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQAI--NQVNHFG-SFV 423 (1655)
T ss_pred HHHHHHHHH---hCCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCccc--chhhHHH-hhh
Confidence 456666654 34556778888888888 4567888889999999998664431 1 111110 0011111 000
Q ss_pred cceEEec-CCCH---HHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 254 VPGLKVD-GMDA---LAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VD-G~D~---~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
--...|. -.+. ..+..++++|+..+.. .|||.|++-
T Consensus 424 K~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 0012231 1121 1234566666666655 599999996
No 239
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=63.92 E-value=22 Score=30.87 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc---ccccccccccCCchHhhhc
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRG 251 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~---~~~~~~~~~~~~~d~~~~g 251 (347)
++++++|+.+|- +...+.+---|=-|.=...++|+ ..+++|+++++.-.++ +|-.........+++- .+
T Consensus 54 g~GIcAGa~lAG-----kk~ailmQnsGlGNsiNal~SL~--~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiL-e~ 125 (172)
T COG4032 54 GVGICAGAYLAG-----KKPAILMQNSGLGNSINALASLY--VTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKIL-EG 125 (172)
T ss_pred ceeeehhhhhcC-----CCcEEEEeccCcchHHHHHHHHH--HHhccchhhhhhccchhhcCCccccccchhhHHHH-hh
Confidence 455677888774 23444444333222211233333 4789999888877665 2322222222223332 35
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (347)
.++|.+++.+ +.+-+..+..+...+-+ ..|+.+-+
T Consensus 126 ~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 126 LELPTYTIIG--PEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred cCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 6788888874 66767777777777666 88987655
No 240
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=61.56 E-value=53 Score=32.06 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCcccccccccccCCchHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 220 DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 220 ~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
++|+++...+-.++...++..+ .+.+.--.+|+++| -=.|+.+++.+++.|++ .++|++|-..-.|
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~----~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~~~~~~ 176 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQ----CYAAWYSHIPGLKVVAPYFAADCKGLLKTAIR---DPNPVIFLENEIL 176 (327)
T ss_pred CccEEEEeCCCCCCCCCccccc----CHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---CCCcEEEEEchhh
Confidence 5777777655333321111111 11121124666544 33478888888988885 3899998544333
No 241
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.08 E-value=40 Score=27.17 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
++.++|++.-.|...+ ..|.+..|...+.|+|.|..+..
T Consensus 53 ~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 53 PDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp TTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCCC
Confidence 5567888888887764 78899999999999988876543
No 242
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=54.67 E-value=54 Score=34.08 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N 229 (347)
.-+|-|.|.+. + ..++++..|=|++|. .-++..|..-+.|+|+|+-.
T Consensus 52 ~~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~ 98 (539)
T TIGR03393 52 AYAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGA 98 (539)
T ss_pred HHHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECC
Confidence 34455665543 3 356777889999883 34577788889999999843
No 243
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=53.51 E-value=1.4e+02 Score=25.51 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=56.5
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcC-CCeEEEEec-CCcccccccccccCCc
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCEN-NHYGMGTAEWRAAKSP 245 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-LPvi~vv~N-N~~~~~~~~~~~~~~~ 245 (347)
.|+-.+. +++|.|+|+. +. +++++++.. +.. ..++.+.+...++ +|+|+.... ..++...++. ....
T Consensus 54 ~gIaE~~~vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH--~~~~ 123 (168)
T smart00861 54 TGIAEQAMVGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTH--HSQE 123 (168)
T ss_pred cCcCHHHHHHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCccc--cchh
Confidence 3443333 3456666654 32 566666643 322 3577788888887 555555533 3334311111 1112
Q ss_pred hHhhhcCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+..-. -.+|++. +.=.|+.++...++.++++ .++|++|-+
T Consensus 124 ~~~~~-~~iP~~~v~~P~~~~e~~~~l~~a~~~--~~~p~~i~~ 164 (168)
T smart00861 124 DEALL-RAIPGLKVVAPSDPAEAKGLLRAAIRR--DDGPPVIRL 164 (168)
T ss_pred HHHHH-hcCCCcEEEecCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 22221 2455543 3445888999999988842 268977644
No 244
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=52.77 E-value=1.1e+02 Score=30.41 Aligned_cols=98 Identities=24% Similarity=0.225 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhCCCCceEEEE-eCCcccccchHHHHHHHHHH--------cCCCeEEEEecCCcccccccccccCCch
Q 019023 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNIAAL--------WDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~-~GDGa~~~G~~~Ealn~Aa~--------~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
+++|+|+|++ + -++++++ +.| |.+-.+-+-.|-++. +++|++++.....++...+...+ .
T Consensus 95 vg~AaGlA~~----G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~----~ 163 (355)
T PTZ00182 95 AGFAIGAAMN----G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ----S 163 (355)
T ss_pred HHHHHHHHhC----C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----h
Confidence 4566777753 1 2444443 343 332223333344554 35667666543334332221111 1
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
+.+.--.+|++.| .=.|+.+++.+++.|++. ++|++|-
T Consensus 164 ~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~---~~P~~i~ 202 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRD---PNPVVFF 202 (355)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 1121124555443 223778888888888863 8999773
No 245
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=46.55 E-value=1.3e+02 Score=31.98 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=70.3
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccc--
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA-- 241 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~-- 241 (347)
-|+-.+||....---|-|+. -.|-+|+++.+|-+... +..|++..|..-+.|+|+-++-=.-- +...++.
T Consensus 204 TFLDTPGHaAF~aMRaRGA~------vtDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiDkp-~a~pekv~~ 275 (683)
T KOG1145|consen 204 TFLDTPGHAAFSAMRARGAN------VTDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKIDKP-GANPEKVKR 275 (683)
T ss_pred EEecCCcHHHHHHHHhccCc------cccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccCCC-CCCHHHHHH
Confidence 35555666544322222222 23557888888888754 58899999999999988766432210 1111100
Q ss_pred ---cCCchHhhhcCCcceEEe---cCCCHHHHHHHHH---HHHHHhcc-CCCE---EEEEEEecCCCCC
Q 019023 242 ---AKSPSYYKRGDYVPGLKV---DGMDALAVKQACK---FAKEHALK-NGPM---ILEMDTYRYHGHS 297 (347)
Q Consensus 242 ---~~~~d~~~~g~gipg~~V---DG~D~~av~~a~~---~A~~~ar~-~gP~---lIe~~t~R~~GHs 297 (347)
....-..+.|-.++.+.| .|.+.+.+.+|+- +-++.... +||+ +||..+.+..|-.
T Consensus 276 eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~ 344 (683)
T KOG1145|consen 276 ELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPV 344 (683)
T ss_pred HHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccce
Confidence 000111222322444433 6888888888763 22333223 7775 8998888877753
No 246
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=44.27 E-value=42 Score=27.01 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=29.0
Q ss_pred ceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc
Q 019023 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232 (347)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~ 232 (347)
.++|+.+.+-....|..+| +-+|...+.||+.++.+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 4566666554577788899 99999999999999877664
No 247
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=42.90 E-value=1e+02 Score=32.12 Aligned_cols=47 Identities=30% Similarity=0.342 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N 229 (347)
-+|-|.|.+. +.-.++++..|=|.+|. .-++..|...+.|+|+|.-.
T Consensus 61 ~aAdgyar~t---g~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 61 FLALGLAKAS---KRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHhh---CCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 3456666543 34457778889999883 45688888999999999744
No 248
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.36 E-value=1.1e+02 Score=24.59 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
+++.+++++.--|...+ +.+++..|...+.|+|.|..|..
T Consensus 46 ~~~d~vi~iS~sG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDE--LLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 45667777777776663 77888888888999888887654
No 249
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=41.11 E-value=1.9e+02 Score=33.41 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHh-hhcCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KRGDYV 254 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~-~~g~gi 254 (347)
+.+++|.+.+ +.++.++..-.++. ...|.|-.++-..+|+++++.+-.+.-. .........|+. .|.-|.
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~-~~~i~~dh~Dv~~~R~~G~ 134 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAH-ALSIFGDHQDVMAARQTGF 134 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCC-CCccCCCchHHHHhhcCCe
Confidence 4556665543 34454444333332 2578886666668999888877554311 111111112332 244444
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
+.+-..++.++++-.-.|...+.+ ..|+++-..-++. +|.
T Consensus 135 --ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 135 --AMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred --EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 334445888888877777777666 8899998887764 454
No 250
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=41.00 E-value=34 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 321 IERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 321 i~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
+..+-++|+++|++|+++.+.|+.+
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~ 40 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSK 40 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcC
Confidence 4558899999999999999999764
No 251
>PRK13683 hypothetical protein; Provisional
Probab=37.97 E-value=56 Score=25.75 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 260 DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 260 DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
+-.|+.++|+-++.|++ .+.|-+||+.|.+..+
T Consensus 21 e~edA~alYq~I~~am~---sg~P~llELtCek~~~ 53 (87)
T PRK13683 21 EAEDAEALYQQIRQAMR---SGNPRLLELTCEKVED 53 (87)
T ss_pred cHHHHHHHHHHHHHHHh---cCCCcEEEEEecCcCC
Confidence 44477888888888885 4889999999988654
No 252
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=37.64 E-value=2.4e+02 Score=27.49 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=22.2
Q ss_pred CcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 253 gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
.+|+++| -=.|+.+.+..++.|++ .++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~~---~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAIR---SNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHh---CCCcEEEE
Confidence 4666544 22377888888888875 38999884
No 253
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.48 E-value=42 Score=26.18 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 322 ERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 322 ~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
..+..+|+++|++|.++.+.|+.+
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~ 42 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAA 42 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcC
Confidence 458899999999999999999763
No 254
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.89 E-value=71 Score=28.25 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=32.3
Q ss_pred hHhhhcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 246 SYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 246 d~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
-+.+|++|..++-++|.+-..+.+.++..++ + +||..|+..+
T Consensus 24 ~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 24 ALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred hhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 4567889999999999866677777777665 5 8998777643
No 255
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=36.76 E-value=86 Score=29.89 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=50.5
Q ss_pred eEEEEeCCcc--cccchHHHHHHHHHHcCCCeEEEEecCC-c--cccccccccc--CCc-hHhh--hcCCcceEEecCCC
Q 019023 194 VTFALYGDGA--ANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTAEWRAA--KSP-SYYK--RGDYVPGLKVDGMD 263 (347)
Q Consensus 194 ~vv~~~GDGa--~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~--~~~~~~~~~~--~~~-d~~~--~g~gipg~~VDG~D 263 (347)
.++.++.||. .++|..-+.+.-|...++-++||+.+|. . +|........ ... .+.. ..+.+|+..|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888877778888888998888776664 2 2321111000 011 1111 24667775442 37
Q ss_pred HHHHHHHHHHHH
Q 019023 264 ALAVKQACKFAK 275 (347)
Q Consensus 264 ~~av~~a~~~A~ 275 (347)
+.++-+++..++
T Consensus 245 ~~~lp~~l~~~l 256 (266)
T cd01460 245 LNQLPSVLSDAL 256 (266)
T ss_pred hhHhHHHHHHHH
Confidence 888887776665
No 256
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=35.77 E-value=42 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCCHHHHHHHH
Q 019023 324 IRKLILAHDLATEKELKSVS 343 (347)
Q Consensus 324 ~~~~L~~~g~~t~~e~~~i~ 343 (347)
+|+-+++.|++|+++++++-
T Consensus 28 vre~v~~~g~lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHc
Confidence 67778899999999999874
No 257
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=34.81 E-value=84 Score=34.10 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.6
Q ss_pred ceEEEEeCCcccccchHHHHHHHHHHcCCCeEEE
Q 019023 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (347)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~v 226 (347)
++.++=--||-... ..||+.++..|++|+||=
T Consensus 159 gVpvVPGTpgPitt--~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 159 GVPVVPGTPGPITT--VEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCCccCCCCCCccc--HHHHHHHHHhcCCcEEEe
Confidence 34555556777764 789999999999999874
No 258
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=34.14 E-value=94 Score=25.26 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
+++.++|++..-|...+ ..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 45678888888888774 78999999999999998876544
No 259
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=34.09 E-value=47 Score=26.54 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 320 PIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
+...+.++|+++|++|+++.+.|+.+
T Consensus 22 ~~~~v~~~L~~~gIlT~~~~e~I~a~ 47 (94)
T cd08327 22 VDGLVIQYLYQEGILTESHVEEIESQ 47 (94)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 34457788999999999999999763
No 260
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=32.59 E-value=1.3e+02 Score=23.21 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.1
Q ss_pred EEecCCCHHHHHHHHHHHHHHhccCCC-EEEEEEEecC
Q 019023 257 LKVDGMDALAVKQACKFAKEHALKNGP-MILEMDTYRY 293 (347)
Q Consensus 257 ~~VDG~D~~av~~a~~~A~~~ar~~gP-~lIe~~t~R~ 293 (347)
-.+.| |..+|.++++++..++.+.++ +++++..-+.
T Consensus 41 T~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 41 TQLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp EEEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred EEEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 45778 789999999999998877555 8888877664
No 261
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.89 E-value=1.7e+02 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 189 ~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
..++.+++++.+.|.... +.+++..|...+.|+|.+..+.+
T Consensus 107 ~~~gDvli~iS~SG~s~~--v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRD--IVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 357789999999998874 88999999999999998875533
No 262
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.82 E-value=1.3e+02 Score=24.94 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=28.7
Q ss_pred CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
++.++|.+.++|...+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4567888888886543 35677888888889988887654
No 263
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=30.85 E-value=1.8e+02 Score=27.28 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=39.3
Q ss_pred hHHHHHHHHH-HcCCC-eE--EEE-ecCCc--ccccccc-cccCCchHhhhc--CCcceEEecC-CCHHHHHHHHHHHHH
Q 019023 208 QLFEALNIAA-LWDLP-AI--LVC-ENNHY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDG-MDALAVKQACKFAKE 276 (347)
Q Consensus 208 ~~~Ealn~Aa-~~~LP-vi--~vv-~NN~~--~~~~~~~-~~~~~~d~~~~g--~gipg~~VDG-~D~~av~~a~~~A~~ 276 (347)
.+.|||.+|. ....| +| +++ +|-.| |+..... ....-+.....| .|-..+-|++ .|+.++.+-+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 5889999996 45688 55 344 33346 3322222 111223333334 4555677887 4555444333
Q ss_pred HhccCCCEEEE
Q 019023 277 HALKNGPMILE 287 (347)
Q Consensus 277 ~ar~~gP~lIe 287 (347)
++.|+||+
T Consensus 225 ---E~~pvLI~ 232 (232)
T TIGR01204 225 ---EQKPILIE 232 (232)
T ss_pred ---hcCcEEeC
Confidence 37899984
No 264
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.60 E-value=1.1e+02 Score=24.85 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
+++.++|++.-.|...+ ..|++..|...+.|+|.|..|+
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCCc
Confidence 45678888888888875 7889999999999998887543
No 265
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=30.25 E-value=68 Score=24.77 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 320 PIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.+..+-+.|+..|++|+++.+.|+++
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~ 41 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAE 41 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 46667889999999999999999764
No 266
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.92 E-value=68 Score=25.24 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 321 IERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 321 i~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
+..+-.+|+++|++|+++.+.|+..
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 4457889999999999999999763
No 267
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.71 E-value=1.2e+02 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.1
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
+++.++|++.-.|...+ ..|++..|...+.|+|.|..|.
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCC
Confidence 45678888888888875 7899999999999999888664
No 268
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.64 E-value=3e+02 Score=29.57 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCCceEEEEeCC-cccccchHHHHHHHHHHcCCCeEEEEecCCc-------ccccccccccCC--c-h-Hhh--hcCCcc
Q 019023 190 KDETVTFALYGD-GAANQGQLFEALNIAALWDLPAILVCENNHY-------GMGTAEWRAAKS--P-S-YYK--RGDYVP 255 (347)
Q Consensus 190 ~~~~~vv~~~GD-Ga~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-------~~~~~~~~~~~~--~-d-~~~--~g~gip 255 (347)
.++-.+|+++|+ |...+-.+.|++.-+. .+-|||.++---.- .++......... + . +.+ +-.|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv- 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA- 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC-
Confidence 355679999999 8887766777665554 67898876633211 111111111111 0 1 111 23677
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhcc
Q 019023 256 GLKVDGMDALAVKQACKFAKEHALK 280 (347)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~ 280 (347)
+.++ ++.++.++++++++....
T Consensus 298 -~vv~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 298 -IVPT--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred -eEeC--CHHHHHHHHHHHHHHHHh
Confidence 6676 888999999888776543
No 269
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=28.41 E-value=1.1e+02 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
+++.+++++..-|...+ +.+++..|...+.|+|.|..|..
T Consensus 78 ~~~D~~i~iS~sG~t~~--~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKN--VLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 56788999999998774 88999999999999999886543
No 270
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=27.75 E-value=1.1e+02 Score=28.73 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
.++.++|.+...|.... +.+++..|...+.|+|.|+.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 56788999999999985 89999999999999998886654
No 271
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=27.53 E-value=76 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 319 DPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.++..+=+.|++.|++|++|.+.|+.+
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~ 49 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQK 49 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 445667789999999999999999764
No 272
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=27.21 E-value=1.9e+02 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 189 ~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
..++.+++++...|.... +.+++..|...+.|+|.|..|++
T Consensus 109 ~~~~Dv~I~iS~SG~t~~--~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSGN--IIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 357789999999998774 78999999999999999987643
No 273
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.49 E-value=1.3e+02 Score=26.95 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 189 ~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
.+++.+++++...|...+ +.+++..|...+.|+|.|..+++
T Consensus 109 ~~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 109 GQPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 467889999999998774 88999999999999999986643
No 274
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=26.32 E-value=2.8e+02 Score=26.15 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=39.6
Q ss_pred hHHHHHHHHHH-cCCC-eE--EEE-ecCCc--ccccccc-cccCCchHhhhc--CCcceEEecCC-CHHHHHHHHHHHHH
Q 019023 208 QLFEALNIAAL-WDLP-AI--LVC-ENNHY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDGM-DALAVKQACKFAKE 276 (347)
Q Consensus 208 ~~~Ealn~Aa~-~~LP-vi--~vv-~NN~~--~~~~~~~-~~~~~~d~~~~g--~gipg~~VDG~-D~~av~~a~~~A~~ 276 (347)
.+.|||.+|.. ...| +| +++ +|-.| |+..... ....-+.....| .|-..+-|++. |+.+ .++
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~-------~i~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEE-------LIS 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHH-------HHH
Confidence 58899999974 3466 55 344 33346 3322222 111223333334 35555778874 4433 333
Q ss_pred HhccCCCEEEEEE
Q 019023 277 HALKNGPMILEMD 289 (347)
Q Consensus 277 ~ar~~gP~lIe~~ 289 (347)
|. ++.|+||+..
T Consensus 230 yL-E~~pVLI~~~ 241 (242)
T PRK01322 230 YL-ENKPVLIVYE 241 (242)
T ss_pred HH-hcCcEEEEec
Confidence 32 3889999864
No 275
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.96 E-value=1.8e+02 Score=25.45 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccCCCEEEEEEEec----CCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q 019023 269 QACKFAKEHALKNGPMILEMDTYR----YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (347)
Q Consensus 269 ~a~~~A~~~ar~~gP~lIe~~t~R----~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (347)
+-++.|+++ |..||++||+..|- ..=-+..|-++.-.-+.-++... ..||...+-+++.++-
T Consensus 70 ELiENAVKf-ra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it-~gDP~dLlieRiEanA 135 (184)
T COG5381 70 ELIENAVKF-RATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVIT-EGDPLDLLIERIEANA 135 (184)
T ss_pred HHHHhhhcc-cCCCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHh-cCChHHHHHHHHHhhc
Confidence 344566665 34889999998653 22222344443111112334444 5799999999887653
No 276
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.75 E-value=92 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 319 DPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.++..+-++|.++|++|.++.+.|...
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~ 39 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSE 39 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 466677789999999999999988753
No 277
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=25.74 E-value=96 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 318 RDPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.+-|.-+-+.|++.++++++|.+.|..+
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~ 42 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEE 42 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 5667778899999999999999999774
No 278
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.67 E-value=2e+02 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred hCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 188 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 188 ~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
...++.++|++..-|...+ +.+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 3457788999999998874 78999999999999999987654
No 279
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=25.41 E-value=49 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCCeEEEEecCCcc
Q 019023 211 EALNIAALWDLPAILVCENNHYG 233 (347)
Q Consensus 211 Ealn~Aa~~~LPvi~vv~NN~~~ 233 (347)
|.++.|..+++|+|||++-+.+-
T Consensus 1 ei~~~a~r~~i~vi~Van~~h~~ 23 (130)
T PF02639_consen 1 EIIRVAKRYGIPVIFVANYSHRL 23 (130)
T ss_pred CHHHHHHHHCCEEEEEeCCCccC
Confidence 45789999999999999887753
No 280
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=25.14 E-value=67 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhh
Q 019023 323 RIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 323 ~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.+-++|+++|++|+++.+.|+.+
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~ 46 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAA 46 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcc
Confidence 47788999999999999998763
No 281
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=25.11 E-value=88 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 322 ERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 322 ~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
.++-.+|.+.|++|+++.++|..+
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~ 42 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSS 42 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCC
Confidence 458899999999999999999764
No 282
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=25.00 E-value=4.4e+02 Score=25.86 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhc-CCCCCeEEc
Q 019023 56 SVETTPKELLSFFRQMA--------TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG-ITKKDSIIT 119 (347)
Q Consensus 56 ~~~ls~e~l~~ly~~M~--------~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~-l~~~D~i~~ 119 (347)
.+.++++++..+.+.+. ..+.||+.+.+++..... ...+.|.+|+..++.+. ++++|.|+.
T Consensus 9 ~p~~~~~e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~~~---v~~~sgt~al~lal~al~~~~Gd~Viv 78 (379)
T PRK11658 9 RPAMGDEELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQHA---IAVSSATAGMHITLMALGIGPGDEVIT 78 (379)
T ss_pred CCCCCHHHHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCCeE---EEECCHHHHHHHHHHHcCCCCCCEEEE
Confidence 34556666555554331 247899998887754321 22467999998877766 789997664
No 283
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=24.25 E-value=2.7e+02 Score=28.35 Aligned_cols=69 Identities=20% Similarity=0.105 Sum_probs=41.3
Q ss_pred CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcceEEecCCCHHHHHHHH
Q 019023 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (347)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg~~VDG~D~~av~~a~ 271 (347)
..++.+..||-+.. +..+|++.++.+++++=+++.+.... -....+|...+.|+| +++++.+.+
T Consensus 127 ~~I~~ASSGnTgAs------~aaya~rag~~v~Vl~P~g~vs~~k~---------~q~~~~ga~~i~v~G-~fDda~~~v 190 (411)
T COG0498 127 KTILCASSGNTGAS------AAAYAARAGLKVFVLYPKGKVSPGKL---------AQMLTLGAHVIAVDG-NFDDAQELV 190 (411)
T ss_pred CEEEEeCCchHHHH------HHHHhccCCCeEEEEecCCCCCHHHH---------HHHHhcCCEEEEEcC-cHHHHHHHH
Confidence 45666666665532 25577888888877765544332111 011235556788888 566777777
Q ss_pred HHHHH
Q 019023 272 KFAKE 276 (347)
Q Consensus 272 ~~A~~ 276 (347)
+++.+
T Consensus 191 k~~~~ 195 (411)
T COG0498 191 KEAAN 195 (411)
T ss_pred HHHHh
Confidence 76665
No 284
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.13 E-value=3.2e+02 Score=27.96 Aligned_cols=112 Identities=22% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcccccccccCCChh--HHHHHHHHhcCCCCCeEEc----CCcchHHHHhcCCCHHHHHHHHhCC----
Q 019023 75 RRMEIAADSLYKAKLVRGFCHLYDGQ--EAVAIGMEAGITKKDSIIT----AYRDHCTFLGRGGTLLEVFSELMGR---- 144 (347)
Q Consensus 75 R~~e~~~~~l~~~~~~~Gf~~~~~Gq--Ea~~vg~~~~l~~~D~i~~----~yR~~~~~l~~G~~~~~~~~el~g~---- 144 (347)
-.+|+++..+-+-.+|. ...-.|. +++.-.+.-.|.++|.||- +|+|-- .=..||..+
T Consensus 56 ~sieefV~~Le~PRkI~--lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~----------RR~~eL~~~Gi~F 123 (473)
T COG0362 56 YSIEEFVASLEKPRKIL--LMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTI----------RRNKELSEKGILF 123 (473)
T ss_pred CcHHHHHHHhcCCceEE--EEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHH----------HHHHHHHhcCCeE
Confidence 35666666665544442 2233455 7777778889999999994 465531 111222211
Q ss_pred -CCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCccc
Q 019023 145 -KDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (347)
Q Consensus 145 -~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~ 204 (347)
-.|.|.|.-|..|= | .++++...=.+..-.-+=-++|.|.. +.+|+..+|-++.
T Consensus 124 vG~GVSGGEeGA~~G--P--SiMpGG~~eay~~v~pil~~IaAk~~--g~pCc~~iG~~GA 178 (473)
T COG0362 124 VGMGVSGGEEGARHG--P--SIMPGGQKEAYELVAPILTKIAAKVD--GEPCCTWIGPDGA 178 (473)
T ss_pred EeccccccccccccC--C--CcCCCCCHHHHHHHHHHHHHHHhhcC--CCCceeeECCCCC
Confidence 13556665553331 1 23322211112121222335555554 6788888887665
No 285
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=23.15 E-value=1.1e+02 Score=22.86 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHh
Q 019023 321 IERIRKLILAHDLATEKELKSVSD 344 (347)
Q Consensus 321 i~~~~~~L~~~g~~t~~e~~~i~~ 344 (347)
+..+-++|+++|++|++|.+.|..
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc
Confidence 556778899999999999999975
No 286
>PRK13761 hypothetical protein; Provisional
Probab=23.11 E-value=2.4e+02 Score=26.51 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=26.1
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHH
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGV 314 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~ 314 (347)
.-|.+.||||-..-+. ++.++.+.. +.| ||+..| ||+++-++.+
T Consensus 68 ~~PVISVNGN~AAL~p---~eiveLa~~~~A~--iEVNLF-------------~RT~eR~~~I 112 (248)
T PRK13761 68 KHPVISVNGNTAALVP---EEIVELAEALNAK--LEVNLF-------------YRTEERVEKI 112 (248)
T ss_pred CCCeEEEcchHHhhCh---HHHHHHHHHhCCC--EEEEec-------------cCCHHHHHHH
Confidence 4577889996432222 233333334 666 788765 8988876654
No 287
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=22.60 E-value=2.7e+02 Score=26.21 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=38.3
Q ss_pred hHHHHHHHHH-HcCCC-eE--EEEe-cCCc--cccccccc-ccCCchHhhhc--CCcceEEecCC-CHHHHHHHHHHHHH
Q 019023 208 QLFEALNIAA-LWDLP-AI--LVCE-NNHY--GMGTAEWR-AAKSPSYYKRG--DYVPGLKVDGM-DALAVKQACKFAKE 276 (347)
Q Consensus 208 ~~~Ealn~Aa-~~~LP-vi--~vv~-NN~~--~~~~~~~~-~~~~~d~~~~g--~gipg~~VDG~-D~~av~~a~~~A~~ 276 (347)
.+.|||.+|. ....| +| +++. |-.| |+...... ...-+.....| .|-..+-|++. |.. ..++
T Consensus 157 r~~EAL~LAsKV~~~PgiiaELC~SDDP~YtTGYVA~~~~GY~RI~~mK~~G~~~GGRvffv~~~~d~~-------~~i~ 229 (239)
T PF03744_consen 157 RFREALALASKVAAAPGIIAELCWSDDPDYTTGYVASKKFGYHRITNMKEAGSPKGGRVFFVDGSIDIE-------ELID 229 (239)
T ss_pred hHHHHHHHHHHHhcCCcceEEEEecCCCCCceEEEEeCCcceEECccccccCCCCCCEEEEEeCCCCHH-------HHHH
Confidence 4899999996 56788 44 3343 3346 33222221 11223333334 35555778764 432 2333
Q ss_pred HhccCCCEEEE
Q 019023 277 HALKNGPMILE 287 (347)
Q Consensus 277 ~ar~~gP~lIe 287 (347)
|. ++.|+||+
T Consensus 230 yL-e~~pVLv~ 239 (239)
T PF03744_consen 230 YL-ENQPVLVE 239 (239)
T ss_pred HH-hcCcEEeC
Confidence 32 37899985
No 288
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=22.47 E-value=2.5e+02 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.2
Q ss_pred ceEEEEeCCcccccch-----H-HHHHHHHHHcCCCeEEE
Q 019023 193 TVTFALYGDGAANQGQ-----L-FEALNIAALWDLPAILV 226 (347)
Q Consensus 193 ~~vv~~~GDGa~~~G~-----~-~Ealn~Aa~~~LPvi~v 226 (347)
+.+++++.||..+.|. . .+....+..++++++.|
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I 138 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVI 138 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEE
Confidence 5799999999987653 1 34445556677777655
No 289
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.96 E-value=3.3e+02 Score=24.42 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=23.7
Q ss_pred eEEEEeCCc-ccccchHHHHHHHHHHcCCCeEEE
Q 019023 194 VTFALYGDG-AANQGQLFEALNIAALWDLPAILV 226 (347)
Q Consensus 194 ~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvi~v 226 (347)
.+|+++|++ ...+|.++++...++..++.+-+|
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI 142 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDII 142 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 566666666 667888888888777777776544
No 290
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=21.14 E-value=3.5e+02 Score=21.41 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCceEEEEeCCcccccc--hHHHHHHHHHHcCCCeEEEE
Q 019023 191 DETVTFALYGDGAANQG--QLFEALNIAALWDLPAILVC 227 (347)
Q Consensus 191 ~~~~vv~~~GDGa~~~G--~~~Ealn~Aa~~~LPvi~vv 227 (347)
.....+++++||....+ ...+.+..+...+..+.+|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~ 138 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIG 138 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEE
Confidence 34678999999998765 46677777777777665553
No 291
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=21.13 E-value=2.2e+02 Score=25.50 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=30.7
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (347)
-|.+.||||-. ++. .++.++.+.. +.| ||+..| ||++|-++.+ .+.|.++|
T Consensus 6 ~PVISVNGN~A-AL~--p~eiveLa~~~~A~--iEVNLF-------------yRT~eR~~~I----------~~~L~~~G 57 (178)
T PF02006_consen 6 HPVISVNGNTA-ALV--PEEIVELAKATGAK--IEVNLF-------------YRTEERVEKI----------AELLREHG 57 (178)
T ss_pred CCEEEEcccHH-HhC--hHHHHHHHHHhCCC--EEEEcc-------------cCCHHHHHHH----------HHHHHHcC
Confidence 47899999743 322 1233333333 555 777765 8998876654 45666666
No 292
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.88 E-value=1.9e+02 Score=29.49 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcC
Q 019023 73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120 (347)
Q Consensus 73 ~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~ 120 (347)
..+.||+.+..+..... . ...+.|..|+..++.+.++++|.|+..
T Consensus 62 tv~~lE~~la~leg~~~--a-v~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGGVG--A-VATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCCCc--E-EEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 46889999888765422 1 234789999998888889999987763
No 293
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.86 E-value=4.4e+02 Score=21.34 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=28.0
Q ss_pred CCceEEEEeCCcccccc-hHHHHHHHHHHcCCCeEEEEec
Q 019023 191 DETVTFALYGDGAANQG-QLFEALNIAALWDLPAILVCEN 229 (347)
Q Consensus 191 ~~~~vv~~~GDGa~~~G-~~~Ealn~Aa~~~LPvi~vv~N 229 (347)
..+.+++++.||.-+.+ ...+.+......+++++.|...
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g 141 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVG 141 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEecc
Confidence 34578999999987654 3667777777778887766543
No 294
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=20.09 E-value=1.3e+02 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.5
Q ss_pred HHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHH
Q 019023 311 ISGVRQERDPIERIRKLILAHDLATEKELKSVS 343 (347)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~ 343 (347)
|+.|. .-+.+.|+++|++|++||++..
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~ar~ 95 (222)
T PF02211_consen 69 YERWL------AALEKLLVEKGVITAEELDARA 95 (222)
T ss_dssp HHHHH------HHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHH
Confidence 56674 4699999999999999999853
Done!