Query 019023
Match_columns 347
No_of_seqs 283 out of 2321
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:41:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_A PDHE1-A type I, pyruvat 100.0 1.7E-76 5.9E-81 580.1 33.1 310 34-346 6-317 (365)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 3.5E-69 1.2E-73 534.9 31.5 289 56-346 68-360 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 5.1E-67 1.7E-71 513.8 33.6 281 55-346 37-321 (368)
4 2bfd_A 2-oxoisovalerate dehydr 100.0 4.4E-67 1.5E-71 519.4 32.9 291 55-346 48-341 (400)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 2.7E-63 9.1E-68 487.6 33.9 289 56-346 30-322 (367)
6 2yic_A 2-oxoglutarate decarbox 100.0 3.3E-59 1.1E-63 498.8 18.5 296 44-346 102-437 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 4.9E-58 1.7E-62 500.3 19.9 296 44-346 347-682 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 1.6E-56 5.6E-61 480.6 21.6 295 45-346 183-509 (933)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 8.7E-33 3E-37 287.6 18.9 232 46-299 10-291 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3.9E-32 1.3E-36 283.1 12.1 230 47-297 13-294 (629)
11 1gpu_A Transketolase; transfer 99.9 1.2E-26 4.1E-31 243.6 22.4 234 72-320 13-280 (680)
12 2e6k_A Transketolase; structur 99.9 5.2E-27 1.8E-31 245.3 17.2 233 72-321 13-281 (651)
13 2r8o_A Transketolase 1, TK 1; 99.9 7.5E-26 2.6E-30 237.2 21.2 231 72-316 9-275 (669)
14 3rim_A Transketolase, TK; TPP, 99.9 1.8E-25 6.2E-30 234.4 20.9 209 97-315 49-296 (700)
15 1itz_A Transketolase; calvin c 99.9 3.6E-25 1.2E-29 232.3 22.3 245 55-316 7-289 (675)
16 1r9j_A Transketolase; domains, 99.9 5.5E-25 1.9E-29 230.7 22.3 150 164-316 110-277 (673)
17 3l84_A Transketolase; TKT, str 99.9 4.2E-25 1.4E-29 229.7 20.4 238 60-315 2-269 (632)
18 3mos_A Transketolase, TK; thia 99.9 1.4E-24 4.9E-29 225.5 24.3 230 58-303 4-253 (616)
19 2qtc_A Pyruvate dehydrogenase 99.9 1.3E-24 4.3E-29 232.9 22.7 264 47-316 60-422 (886)
20 3kom_A Transketolase; rossmann 99.9 9.5E-25 3.2E-29 228.2 19.8 149 164-315 110-276 (663)
21 3uk1_A Transketolase; structur 99.9 2.1E-24 7.3E-29 226.8 18.5 149 163-315 148-314 (711)
22 3m49_A Transketolase; alpha-be 99.9 1.5E-23 5.1E-28 219.9 19.2 209 97-315 56-300 (690)
23 4feg_A Pyruvate oxidase; carba 99.9 5.1E-23 1.7E-27 213.3 10.5 162 168-339 418-597 (603)
24 1v5e_A Pyruvate oxidase; oxido 99.6 4.4E-16 1.5E-20 160.8 10.6 119 168-294 411-541 (590)
25 2pan_A Glyoxylate carboligase; 99.6 5E-16 1.7E-20 161.1 8.8 120 167-294 439-582 (616)
26 2vk8_A Pyruvate decarboxylase 99.6 8.8E-16 3E-20 157.5 6.5 119 167-292 410-542 (563)
27 1q6z_A BFD, BFDC, benzoylforma 99.6 1.3E-15 4.5E-20 155.0 7.6 113 170-293 401-526 (528)
28 1ozh_A ALS, acetolactate synth 99.6 1.6E-15 5.4E-20 155.9 7.9 115 168-293 418-544 (566)
29 2uz1_A Benzaldehyde lyase; thi 99.6 2.3E-15 8E-20 154.4 9.1 116 168-292 417-546 (563)
30 2iht_A Carboxyethylarginine sy 99.6 2.4E-15 8.4E-20 154.6 8.1 114 168-292 434-561 (573)
31 2pgn_A Cyclohexane-1,2-dione h 99.6 2E-15 6.7E-20 155.9 6.9 119 168-297 422-552 (589)
32 1t9b_A Acetolactate synthase, 99.6 3.8E-15 1.3E-19 156.3 9.0 118 167-295 510-640 (677)
33 1ybh_A Acetolactate synthase, 99.6 5.4E-15 1.8E-19 152.6 8.9 119 167-296 423-562 (590)
34 2vbi_A Pyruvate decarboxylase; 99.5 3.4E-15 1.1E-19 153.3 7.2 116 167-293 406-534 (566)
35 3eya_A Pyruvate dehydrogenase 99.5 1.1E-14 3.7E-19 149.1 9.8 116 168-294 404-531 (549)
36 1ovm_A Indole-3-pyruvate decar 99.5 6E-15 2E-19 150.9 7.2 115 167-292 405-532 (552)
37 2vbf_A Branched-chain alpha-ke 99.5 1.4E-14 4.7E-19 148.9 9.5 116 167-292 422-551 (570)
38 2wvg_A PDC, pyruvate decarboxy 99.5 1.5E-14 5.1E-19 148.6 8.7 117 167-293 410-542 (568)
39 2nxw_A Phenyl-3-pyruvate decar 99.5 1E-14 3.5E-19 149.8 7.3 114 168-292 420-542 (565)
40 2c31_A Oxalyl-COA decarboxylas 99.5 3.9E-14 1.3E-18 145.5 10.4 116 167-294 423-549 (568)
41 2q28_A Oxalyl-COA decarboxylas 99.5 6.5E-14 2.2E-18 143.6 11.3 117 167-295 418-547 (564)
42 3hww_A 2-succinyl-5-enolpyruvy 99.4 5.3E-14 1.8E-18 144.3 6.1 113 167-292 414-539 (556)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.4 4.8E-14 1.6E-18 146.0 4.3 112 169-292 454-580 (604)
44 3ahc_A Phosphoketolase, xylulo 99.4 1.1E-12 3.8E-17 139.0 11.8 135 156-294 161-322 (845)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.4 2.6E-13 8.7E-18 139.8 5.3 107 174-293 440-561 (578)
46 2c42_A Pyruvate-ferredoxin oxi 98.9 6.7E-09 2.3E-13 115.1 12.2 97 192-293 953-1071(1231)
47 2pgn_A Cyclohexane-1,2-dione h 91.0 1.6 5.5E-05 44.3 11.8 104 177-290 57-164 (589)
48 1yd7_A 2-keto acid:ferredoxin 90.2 0.37 1.3E-05 46.8 6.0 107 175-291 76-188 (395)
49 1ybh_A Acetolactate synthase, 89.5 1.2 4E-05 45.3 9.3 105 176-290 63-171 (590)
50 3eya_A Pyruvate dehydrogenase 89.1 0.97 3.3E-05 45.5 8.3 102 177-289 55-160 (549)
51 2iht_A Carboxyethylarginine sy 88.9 1.6 5.3E-05 44.2 9.7 104 177-290 62-170 (573)
52 4feg_A Pyruvate oxidase; carba 88.8 0.97 3.3E-05 46.1 8.2 102 177-289 64-169 (603)
53 3mos_A Transketolase, TK; thia 88.6 3 0.0001 42.8 11.7 102 176-288 368-470 (616)
54 2uz1_A Benzaldehyde lyase; thi 88.3 1.8 6.2E-05 43.6 9.7 105 176-291 54-164 (563)
55 1ozh_A ALS, acetolactate synth 88.1 1.5 5.2E-05 44.2 9.0 104 177-291 62-170 (566)
56 1t9b_A Acetolactate synthase, 87.9 1.6 5.4E-05 45.4 9.1 103 176-289 133-240 (677)
57 2wvg_A PDC, pyruvate decarboxy 87.1 3.8 0.00013 41.3 11.2 107 176-291 54-169 (568)
58 1itz_A Transketolase; calvin c 86.0 5.7 0.00019 41.2 12.0 110 169-288 419-531 (675)
59 2vbi_A Pyruvate decarboxylase; 85.9 3.4 0.00012 41.5 10.2 106 176-290 54-168 (566)
60 1v5e_A Pyruvate oxidase; oxido 85.8 2.1 7.3E-05 43.4 8.6 101 177-289 57-162 (590)
61 2x7j_A 2-succinyl-5-enolpyruvy 85.6 2 6.8E-05 43.8 8.3 106 177-291 83-198 (604)
62 2o1s_A 1-deoxy-D-xylulose-5-ph 85.1 3 0.0001 42.7 9.4 100 176-288 374-476 (621)
63 2pan_A Glyoxylate carboligase; 84.7 3.6 0.00012 41.9 9.7 105 177-290 79-187 (616)
64 2c31_A Oxalyl-COA decarboxylas 84.4 2.3 8E-05 42.8 8.1 105 177-290 61-170 (568)
65 2q28_A Oxalyl-COA decarboxylas 84.2 2.3 8E-05 42.7 8.0 105 177-290 59-168 (564)
66 2r8o_A Transketolase 1, TK 1; 83.9 8.9 0.0003 39.7 12.3 110 169-288 407-518 (669)
67 2ozl_B PDHE1-B, pyruvate dehyd 83.5 2.6 9E-05 39.9 7.6 98 176-289 75-184 (341)
68 2e6k_A Transketolase; structur 83.3 6.6 0.00023 40.5 11.1 110 169-288 402-513 (651)
69 3kom_A Transketolase; rossmann 82.6 6.8 0.00023 40.6 10.8 109 169-287 408-518 (663)
70 1q6z_A BFD, BFDC, benzoylforma 82.5 3.6 0.00012 41.0 8.5 107 176-291 51-161 (528)
71 3uk1_A Transketolase; structur 82.1 6.7 0.00023 41.0 10.6 108 169-287 453-562 (711)
72 2nxw_A Phenyl-3-pyruvate decar 81.9 4 0.00014 41.1 8.6 106 177-290 73-185 (565)
73 1ik6_A Pyruvate dehydrogenase; 81.8 3.6 0.00012 39.5 7.9 98 176-288 111-219 (369)
74 3l84_A Transketolase; TKT, str 81.5 7.4 0.00025 40.1 10.5 110 168-288 386-497 (632)
75 3lq1_A 2-succinyl-5-enolpyruvy 81.2 3.6 0.00012 41.6 8.0 105 177-290 63-177 (578)
76 1gpu_A Transketolase; transfer 81.2 7.1 0.00024 40.5 10.4 109 169-287 414-525 (680)
77 2o1x_A 1-deoxy-D-xylulose-5-ph 79.8 3.5 0.00012 42.4 7.4 100 176-289 377-479 (629)
78 1umd_B E1-beta, 2-OXO acid deh 78.4 8.3 0.00029 35.9 9.1 97 176-287 64-171 (324)
79 1qs0_B 2-oxoisovalerate dehydr 77.6 4.1 0.00014 38.3 6.7 100 175-289 64-174 (338)
80 1r9j_A Transketolase; domains, 77.5 21 0.00071 36.9 12.5 102 177-288 416-518 (673)
81 1w85_B Pyruvate dehydrogenase 75.9 5 0.00017 37.5 6.7 97 175-287 62-170 (324)
82 2c42_A Pyruvate-ferredoxin oxi 75.6 11 0.00037 42.0 10.2 110 176-297 67-178 (1231)
83 3m49_A Transketolase; alpha-be 75.2 18 0.00062 37.6 11.3 110 168-287 431-542 (690)
84 2vk8_A Pyruvate decarboxylase 74.4 9.3 0.00032 38.3 8.7 106 176-290 55-169 (563)
85 3hww_A 2-succinyl-5-enolpyruvy 71.6 8.7 0.0003 38.5 7.7 104 177-290 60-170 (556)
86 2vbf_A Branched-chain alpha-ke 69.8 17 0.00057 36.5 9.3 105 176-290 76-189 (570)
87 2bfd_B 2-oxoisovalerate dehydr 67.8 14 0.00048 34.8 7.8 98 176-288 80-189 (342)
88 1ovm_A Indole-3-pyruvate decar 64.9 22 0.00074 35.4 9.0 49 176-231 56-104 (552)
89 3rim_A Transketolase, TK; TPP, 63.8 40 0.0014 35.1 10.9 110 169-288 437-550 (700)
90 3m3h_A OPRT, oprtase, orotate 45.6 90 0.0031 27.7 8.8 142 177-344 71-221 (234)
91 2zzd_B Thiocyanate hydrolase s 38.6 22 0.00076 30.0 3.3 26 321-346 113-138 (157)
92 3dez_A OPRT, oprtase, orotate 38.3 1.6E+02 0.0053 26.3 9.2 143 176-344 82-233 (243)
93 4hhu_A OR280; engineered prote 37.0 88 0.003 25.1 6.4 91 194-284 4-115 (170)
94 2wns_A Orotate phosphoribosylt 35.9 90 0.0031 26.7 7.0 141 178-345 46-195 (205)
95 3ibs_A Conserved hypothetical 32.7 56 0.0019 27.4 5.1 37 192-228 111-147 (218)
96 2p1h_A APAF-1, apoptotic prote 31.9 34 0.0012 25.5 3.2 25 321-345 24-48 (94)
97 2jgd_A 2-oxoglutarate dehydrog 31.0 2E+02 0.0069 30.9 10.0 101 176-287 665-776 (933)
98 2khz_A C-MYC-responsive protei 28.6 60 0.0021 27.0 4.5 35 193-230 79-113 (165)
99 1jeo_A MJ1247, hypothetical pr 28.0 1.4E+02 0.0049 24.2 6.8 40 190-231 81-120 (180)
100 2kl8_A OR15; structural genomi 27.8 71 0.0024 22.9 3.9 28 257-284 5-33 (85)
101 1m3s_A Hypothetical protein YC 27.3 1.5E+02 0.0051 24.2 6.8 39 190-230 78-116 (186)
102 2w84_A Peroxisomal membrane pr 27.3 63 0.0022 23.5 3.7 27 319-346 33-59 (70)
103 3ff5_A PEX14P, peroxisomal bio 26.1 69 0.0024 22.0 3.5 26 319-345 28-53 (54)
104 3hyn_A Putative signal transdu 24.5 53 0.0018 28.5 3.3 37 192-229 80-118 (189)
105 3e2d_A Alkaline phosphatase; c 24.3 1E+02 0.0035 30.8 5.8 31 263-293 287-317 (502)
106 4hhu_A OR280; engineered prote 24.2 72 0.0025 25.7 3.8 32 253-284 2-34 (170)
107 3etn_A Putative phosphosugar i 23.2 1.6E+02 0.0053 25.3 6.3 39 190-230 105-145 (220)
108 3ehd_A Uncharacterized conserv 23.1 74 0.0025 26.7 4.0 38 193-232 71-109 (162)
109 3hht_B NitrIle hydratase beta 22.6 69 0.0023 28.6 3.8 29 311-345 73-101 (229)
110 3ygs_P Procaspase 9; apoptosis 21.5 55 0.0019 24.8 2.6 22 324-345 26-47 (97)
111 1n3y_A Integrin alpha-X; alpha 21.4 1.3E+02 0.0046 24.5 5.4 35 192-226 110-146 (198)
112 2x5n_A SPRPN10, 26S proteasome 20.7 1.1E+02 0.0039 25.8 4.8 33 194-226 109-141 (192)
113 4fm4_B NitrIle hydratase beta 20.6 67 0.0023 28.2 3.3 26 311-342 69-94 (206)
114 1vim_A Hypothetical protein AF 20.5 1.8E+02 0.0061 24.3 6.1 38 191-230 89-126 (200)
115 1ugp_B NitrIle hydratase beta 20.4 83 0.0028 28.0 3.9 29 311-345 69-97 (226)
116 2xzm_B RPS0E; ribosome, transl 20.2 1.6E+02 0.0055 26.4 5.8 21 210-230 127-147 (241)
No 1
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=1.7e-76 Score=580.07 Aligned_cols=310 Identities=53% Similarity=0.951 Sum_probs=294.6
Q ss_pred CccceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC
Q 019023 34 TTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT 112 (347)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~ 112 (347)
.++.+|+++ ||+.|+++. |+..+.+|+|+++++|+.|+++|+||+++..+|++|+++||+|++.||||+++|++.+|+
T Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~ 84 (365)
T 2ozl_A 6 ANDATFEIK-KCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 84 (365)
T ss_dssp CSEEEEECC-CCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred ccccccccC-ccccccCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC
Confidence 345677776 999999986 677788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCC
Q 019023 113 KKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (347)
Q Consensus 113 ~~D~i~~~yR~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~ 192 (347)
++|+|+++||+|++++++|+++.++|+|++|+.+|+++|++|+||+++ .++++++|+||+++|+|+|+|+|.++++++
T Consensus 85 ~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~ 162 (365)
T 2ozl_A 85 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKD 162 (365)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999976 489999999999999999999999999999
Q ss_pred ceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcceEEecCCCHHHHHHHHH
Q 019023 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACK 272 (347)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg~~VDG~D~~av~~a~~ 272 (347)
++|||++|||+++||.++|+||+|++|+||+||||+||+|+++++..+....++|+++++|+|+++|||+|+.+|++|++
T Consensus 163 ~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~a~~ 242 (365)
T 2ozl_A 163 EVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATR 242 (365)
T ss_dssp CCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHH
T ss_pred ceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877766778899899999999999999999999999
Q ss_pred HHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 273 FAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 273 ~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+|++++++ +||+|||+.|||++||+++||+.+||+++|++.|++.+|||.+|+++|+++|++|++++++|++++
T Consensus 243 ~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~ 317 (365)
T 2ozl_A 243 FAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEV 317 (365)
T ss_dssp HHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999998 999999999999999999998888999999999986689999999999999999999999999875
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=3.5e-69 Score=534.93 Aligned_cols=289 Identities=27% Similarity=0.400 Sum_probs=276.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCHH
Q 019023 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (347)
Q Consensus 56 ~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~ 135 (347)
.+.+|+|+++++|+.|+++|.||+++..+|++|++ +|+|++.||||+++|++.+|+++|+|+++||+|+++|++|+++.
T Consensus 68 ~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~D~v~~~yR~~~~~l~~g~~~~ 146 (407)
T 1qs0_A 68 AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLV 146 (407)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCCCEEEecccchHHHHhcCCCHH
Confidence 36899999999999999999999999999999998 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHH
Q 019023 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (347)
Q Consensus 136 ~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~ 215 (347)
++|+|++|+..+.++|+++++|++.++.+|++++|+||+++|+|+|+|+|.|+++++++|||++|||+++||.+||+||+
T Consensus 147 ~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~ 226 (407)
T 1qs0_A 147 EMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTF 226 (407)
T ss_dssp HHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEEecCCccccccccccc-CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 216 AALWDLPAILVCENNHYGMGTAEWRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 216 Aa~~~LPvi~vv~NN~~~~~~~~~~~~-~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
|++|+||+||||+||+|+++++..+.. ..++|+++ +||+++++|||+|+.+|++|+++|++++|+ +||+|||++||
T Consensus 227 A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 306 (407)
T 1qs0_A 227 AHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTY 306 (407)
T ss_dssp HHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred HHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999998877665 46788775 599999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 292 R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|++|||++|+++.||+++|++.|+ ++|||.+|+++|+++|++|++++++|++++
T Consensus 307 R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~ 360 (407)
T 1qs0_A 307 RAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEF 360 (407)
T ss_dssp CCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred ccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999989999999999998 599999999999999999999999999876
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=5.1e-67 Score=513.82 Aligned_cols=281 Identities=29% Similarity=0.461 Sum_probs=260.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCH
Q 019023 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (347)
Q Consensus 55 ~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (347)
..+.+|+++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+++++||+|++++++|.++
T Consensus 37 ~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~v~~~~R~~~~~~~~G~~~ 115 (368)
T 1w85_A 37 AMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL 115 (368)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCEEECCSSCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCEEEecchhHHHHHhcCCCH
Confidence 346799999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHH
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (347)
..+|+|++|+.+ |++|| ++.++++++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.++|+||
T Consensus 116 ~~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~ 186 (368)
T 1w85_A 116 YQAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGIN 186 (368)
T ss_dssp HHHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHH
Confidence 999999999865 35677 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 215 ~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
+|++|+||+||||+||+|+++++.......+++.++ ++|+|+++|||+|+.+|++|+++|++++|+ +||+|||+.||
T Consensus 187 ~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 266 (368)
T 1w85_A 187 FAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCF 266 (368)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECC
T ss_pred HHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999999887766666788876 599999999999999999999999999998 89999999999
Q ss_pred cCCCCC-CCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 292 RYHGHS-MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 292 R~~GHs-~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|.+||+ ++|+++.||+++|++.|++ +|||.+|+++|+++|++|++++++|++++
T Consensus 267 r~~gHs~~~Ddp~~yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~ 321 (368)
T 1w85_A 267 RYGPHTMSGDDPTRYRSKELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQA 321 (368)
T ss_dssp CSSCSCSSCC------CHHHHHHHHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999 9999999999999999985 99999999999999999999999999876
No 4
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=4.4e-67 Score=519.39 Aligned_cols=291 Identities=25% Similarity=0.388 Sum_probs=257.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCeEEcCCcchHHHHhcCCCH
Q 019023 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTL 134 (347)
Q Consensus 55 ~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~ 134 (347)
..+.+|+++++++|+.|+++|.||+++..+|++|+++ |+|++.||||+++|+..+|+++|+|+++||+|++++++|+++
T Consensus 48 ~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~-~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 48 EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRIS-FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPL 126 (400)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-eeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCH
Confidence 3478999999999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHH
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (347)
.++|++++|+.+++++|+++++|++.++.++++++|+||+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~ 206 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFN 206 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 215 ~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
+|+.|+||+||||+||+|+++++.......++++++ ++|+++++|||+|+.+|++|+++|++++|+ ++|+|||++||
T Consensus 207 ~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~ty 286 (400)
T 2bfd_A 207 FAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTY 286 (400)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 999999999999999999999987776667788776 599999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 292 R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|.+||+++|+++.||+++|++.|++..|||.+|+++|++.|++|++++++|++++
T Consensus 287 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~ 341 (400)
T 2bfd_A 287 RIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQS 341 (400)
T ss_dssp CCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred eeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence 9999999999888999999999986568999999999999999999999887765
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=2.7e-63 Score=487.57 Aligned_cols=289 Identities=28% Similarity=0.451 Sum_probs=275.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CeEEcCCcchHHHHhcCCCH
Q 019023 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGTL 134 (347)
Q Consensus 56 ~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~~ 134 (347)
.+.+|+++++++|+.|+++|.||+++..++++|++ ||++++.|||++++++..+|+++ |+|+++||+|++++.+|.++
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~rD~i~~s~r~~~~~~~~G~~~ 108 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPL 108 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCCcEEEeCcHHHHHHHHcCCCH
Confidence 46799999999999999999999999999999998 89999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHH
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN 214 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn 214 (347)
.++|++++|+.+|++.|+++++|++.++.++++++|++|+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||
T Consensus 109 ~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~ 188 (367)
T 1umd_A 109 KELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGIN 188 (367)
T ss_dssp HHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 215 IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 215 ~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
+|+.|++|+||||+||+|+++++.......+++.++ ++|+++++|||+|+.+|++|+++|++++++ +||+|||+.||
T Consensus 189 ~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~ 268 (367)
T 1umd_A 189 FAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVY 268 (367)
T ss_dssp HHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 999999999999999999999887665566777775 599999999999999999999999999988 89999999999
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 292 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 292 R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|.+||+++|+++.||+++|++.|++ +|||.+|+++|+++|++|++++++|++++
T Consensus 269 r~~Ghs~~D~~~~Yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~ 322 (367)
T 1umd_A 269 RYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEI 322 (367)
T ss_dssp CCSCSSTTCCGGGTSCHHHHHHHHT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCccccCCHHHHHHHHc-CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999889999999999984 99999999999999999999999999876
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=3.3e-59 Score=498.83 Aligned_cols=296 Identities=20% Similarity=0.205 Sum_probs=256.2
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhc------CCCCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG------ITKKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~------l~~~D~i 117 (347)
+|..+++|.+. +.+|+|+++++|+.|+++|.||+++..+|+++++.|+ .|||++++|++.+ ++++|++
T Consensus 102 ~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~----~G~Ea~~~g~~~~l~~~~~l~~~D~v 175 (868)
T 2yic_A 102 RWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGLDEVV 175 (868)
T ss_dssp HHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCCCCEE
Confidence 49999999754 7899999999999999999999999999999887664 9999999999876 4589999
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CC-CCCCCcCCcCCC------------CCcccCcccccchhHHHH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SH-GKGGSMHFYKKD------------SGFYGGHGIVGAQIPLGC 180 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~-~~-Grggs~H~~~~~------------~~~~~~~g~lG~~~p~a~ 180 (347)
++ +||||+++|+ +|+++.++|+|++|+.+++ ++ |++.++|++... .++.+++|+||+++|+|+
T Consensus 176 ~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~ 255 (868)
T 2yic_A 176 IAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLE 255 (868)
T ss_dssp EECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHH
T ss_pred EeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHH
Confidence 98 8999999999 9999999999999998876 43 444478987532 245567899999999999
Q ss_pred HHHHHHHhCC----------CCceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccccccCCch
Q 019023 181 GLAFAQKYSK----------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 181 G~A~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
|+|+|.|+++ .+.++||++|||++ +||.+||+||+|+.|+|| +||||+||+||++++.......++
T Consensus 256 G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~ 335 (868)
T 2yic_A 256 GLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEY 335 (868)
T ss_dssp HHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSS
T ss_pred HHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccC
Confidence 9999999864 56799999999996 899999999999999999 999999999999997553333344
Q ss_pred Hhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHH
Q 019023 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER 323 (347)
Q Consensus 247 ~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~ 323 (347)
+.++ ++|+|+++|||+|+++|++|+++|++++|+ ++|+|||++|||++|||++|+++ ||+++|++.|++++|||.+
T Consensus 336 ~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~ 414 (868)
T 2yic_A 336 CTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKA 414 (868)
T ss_dssp TTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHH
Confidence 4443 699999999999999999999999999998 99999999999999999999985 7888899999878999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhh
Q 019023 324 IRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 324 ~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|+++|+++|++|++++++|++++
T Consensus 415 ~~~~L~~~G~~t~ee~~~i~~e~ 437 (868)
T 2yic_A 415 YTEALIGRGDISMKEAEDALRDY 437 (868)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=4.9e-58 Score=500.31 Aligned_cols=296 Identities=20% Similarity=0.210 Sum_probs=255.2
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhc------CCCCCeE
Q 019023 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG------ITKKDSI 117 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~------l~~~D~i 117 (347)
+|..+++|.+. +.+|+|+++++|+.|+++|.||+++..+|++|++.|+ .||||+++|++.+ ++++|++
T Consensus 347 ~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~~~~~l~~~D~v 420 (1113)
T 2xt6_A 347 RWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGLDEVV 420 (1113)
T ss_dssp HHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCCCCEE
Confidence 49999999754 7899999999999999999999999999999887765 9999999999777 5589999
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CC-CCCCCcCCcCCC------------CCcccCcccccchhHHHH
Q 019023 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SH-GKGGSMHFYKKD------------SGFYGGHGIVGAQIPLGC 180 (347)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~-~~-Grggs~H~~~~~------------~~~~~~~g~lG~~~p~a~ 180 (347)
++ +||||+++|+ +|+++.++|+|++|+.+++ ++ |++.++|++... .++.+++|+||+++|+|+
T Consensus 421 ~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~ 500 (1113)
T 2xt6_A 421 IAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLE 500 (1113)
T ss_dssp EECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHH
T ss_pred EeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHH
Confidence 98 8999999999 9999999999999998877 43 444478987532 245567899999999999
Q ss_pred HHHHHHHhCC----------CCceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCcccccccccccCCch
Q 019023 181 GLAFAQKYSK----------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 181 G~A~A~k~~~----------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
|+|+|.|+.+ .+.+++|++|||++ +||.+||+||+|++|+|| +||||+||+|+|+++.......++
T Consensus 501 G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~ 580 (1113)
T 2xt6_A 501 GLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEY 580 (1113)
T ss_dssp HHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSS
T ss_pred HHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccC
Confidence 9999999865 56899999999995 999999999999999999 999999999999997553333333
Q ss_pred Hhh--hcCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHH
Q 019023 247 YYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIER 323 (347)
Q Consensus 247 ~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~ 323 (347)
+.+ .++|+|+++|||+|+++|++|+++|++++|+ ++|+|||++|||++|||++|+++ ||.++|++.|++++|||.+
T Consensus 581 ~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~~~~~~dpi~~ 659 (1113)
T 2xt6_A 581 CTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKA 659 (1113)
T ss_dssp TTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHHHHhcCCHHHH
Confidence 333 3699999999999999999999999999998 99999999999999999999985 7788899999878999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHhhh
Q 019023 324 IRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 324 ~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
|+++|+++|++|++++++|++++
T Consensus 660 ~~~~L~~~G~~t~ee~~~i~~e~ 682 (1113)
T 2xt6_A 660 YTEALIGRGDISMKEAEDALRDY 682 (1113)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.6e-56 Score=480.59 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=240.7
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCeEE
Q 019023 45 FTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSII 118 (347)
Q Consensus 45 ~~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~------~~D~i~ 118 (347)
|...++|.+ .+.+|+|+++++|+.|+++|.||+++..+|++|+..| ..|||++++|+..+++ .+|+||
T Consensus 183 w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~~D~v~ 256 (933)
T 2jgd_A 183 WIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGTREVVL 256 (933)
T ss_dssp HHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCCCCEEe
Confidence 888888764 5789999999999999999999999999999987433 5899999999766654 699999
Q ss_pred c-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCC----------CcccCcccccchhHHHHHHHHH
Q 019023 119 T-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS----------GFYGGHGIVGAQIPLGCGLAFA 185 (347)
Q Consensus 119 ~-~yR~~~~~l~--~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~----------~~~~~~g~lG~~~p~a~G~A~A 185 (347)
+ +||||+++|+ +|+++.++|+|++|+.+++++|++.++|++.... ++.+++|++|+++|+|+|+|+|
T Consensus 257 g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A 336 (933)
T 2jgd_A 257 GMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRA 336 (933)
T ss_dssp ECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHH
Confidence 6 8999999999 9999999999999999887767777889876432 2357789999999999999999
Q ss_pred HHhCC-----CCceEEEEeCCccc-ccchHHHHHHHHHHcCCC---eEEEEecCCccccc-ccccccCCchHhhh--cCC
Q 019023 186 QKYSK-----DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGT-AEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 186 ~k~~~-----~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vi~vv~NN~~~~~~-~~~~~~~~~d~~~~--g~g 253 (347)
.|+++ .+.++||++|||++ ++|++||+||+|+.|++| +||||+||+|+|++ +.......+++.++ ++|
T Consensus 337 ~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a~g 416 (933)
T 2jgd_A 337 RLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQ 416 (933)
T ss_dssp HHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGTTT
T ss_pred HHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHHcC
Confidence 99884 67899999999998 999999999999999999 99999999999999 77655444455544 599
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCChHHHHHHHHHHcC
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (347)
+|+++|||+|+++|++++++|++++|. ++|+|||+.|||++||+++|++. ||+++|++.|++.+||+.+|+++|+++|
T Consensus 417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~-yr~~~e~~~~~~~~dPi~~~~~~Li~~G 495 (933)
T 2jgd_A 417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPS-ATQPLMYQKIKKHPTPRKIYADKLEQEK 495 (933)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHHHHHHHHHTTT
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchh-hCCHHHHHHHHccCCHHHHHHHHHHHcC
Confidence 999999999999999999999999998 99999999999999999999874 9999999999966799999999999999
Q ss_pred CCCHHHHHHHHhhh
Q 019023 333 LATEKELKSVSDLC 346 (347)
Q Consensus 333 ~~t~~e~~~i~~~~ 346 (347)
++|++++++|++++
T Consensus 496 v~t~~~~~~i~~~~ 509 (933)
T 2jgd_A 496 VATLEDATEMVNLY 509 (933)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999875
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.7e-33 Score=287.65 Aligned_cols=232 Identities=18% Similarity=0.164 Sum_probs=176.1
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEE--cCCc
Q 019023 46 TSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYR 122 (347)
Q Consensus 46 ~~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~--~~yR 122 (347)
...+|++|.+.+.++.++|.++++.| |.+...+. ++..|+++++.|+|++.+++..+++ ++|+++ ..||
T Consensus 10 ~l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~-----~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~ 81 (621)
T 2o1s_A 10 TLALVDSTQELRLLPKESLPKLCDEL---RRYLLDSV-----SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQ 81 (621)
T ss_dssp TGGGCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHS-----CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTT
T ss_pred hhhhcCChHHhhhCCHHHHHHHHHHH---HHHHHHHH-----hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchH
Confidence 46788888888899999999999877 66554332 2357999999999999999999999 899988 6899
Q ss_pred chHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCC---CCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEe
Q 019023 123 DHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALY 199 (347)
Q Consensus 123 ~~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~---~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~ 199 (347)
+|++.+.+|. .. ++.. .+..+|.+++..+ +.++ .++|++|+++|+|+|+|+|.|+++++++|||++
T Consensus 82 ~y~~~~l~G~-~~----~~~~-----~r~~~g~~g~~~~~~s~~~~-~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~ 150 (621)
T 2o1s_A 82 AYPHKILTGR-RD----KIGT-----IRQKGGLHPFPWRGESEYDV-LSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVI 150 (621)
T ss_dssp CHHHHHTTTT-GG----GGGG-----TTSTTSCCSSCCTTTCTTCC-SCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHhCC-Hh----hhhc-----ccccCCCCCCCCCCCCCCCc-cCCcccchHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 9999999887 11 1110 0111222222211 2343 469999999999999999999999999999999
Q ss_pred CCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccC------------------------C----------c
Q 019023 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK------------------------S----------P 245 (347)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~------------------------~----------~ 245 (347)
|||++++|++||+||+|+.|++|+||||+||+|+++++...... . .
T Consensus 151 GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~ 230 (621)
T 2o1s_A 151 GDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTE 230 (621)
T ss_dssp ETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC------------------------------------------------
T ss_pred chhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999998876542110 0 0
Q ss_pred hH-------hh--hcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 019023 246 SY-------YK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (347)
Q Consensus 246 d~-------~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (347)
++ .+ .++|++++ +|||||+.++.+++++|++. ++|+|||++|+|++||+..
T Consensus 231 ~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~~---~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 231 EHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDL---KGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp --------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHS---CSEEEEEEECCCTTCCCCC
T ss_pred HHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHHc---CCCEEEEEEEecccCCChh
Confidence 11 12 35888888 99999999999999998753 8999999999999999843
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.97 E-value=3.9e-32 Score=283.13 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=182.1
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCeEEcCCcchH
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIITAYRDHC 125 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~-~~D~i~~~yR~~~ 125 (347)
..+|+.|.+.+.++.++|.++|+.| |.+... .+. +..|+++++.|+-.+.+++...++ ++|+++++ |||+
T Consensus 13 l~~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~---~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~ 83 (629)
T 2o1x_A 13 LDQIHGPKDLKRLSREQLPALTEEL---RGEIVR---VCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQ 83 (629)
T ss_dssp GGGCSSHHHHTTSCGGGHHHHHHHH---HHHHHH---HHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTT
T ss_pred hhhCCChhhhhhCCHHHHHHHHHHH---HHHHHH---HHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchH
Confidence 5678888888899999999999987 654432 232 257999999999888888877788 89999987 8885
Q ss_pred ---HHHhcCC-CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCC
Q 019023 126 ---TFLGRGG-TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201 (347)
Q Consensus 126 ---~~l~~G~-~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GD 201 (347)
+.+.+|. +....++++.|. +|++.++. |+| +.+++|++|+++|+|+|+|+|.|+++++++|||++||
T Consensus 84 ~y~~~~l~G~~~~~~~~r~~~g~-~G~p~~~~-s~~-------~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GD 154 (629)
T 2o1x_A 84 AYAHKILTGRRDQMADIKKEGGI-SGFTKVSE-SEH-------DAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGD 154 (629)
T ss_dssp CHHHHHTTTTGGGGGGTTSTTSC-CSSCCGGG-CTT-------CCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEET
T ss_pred HHHHHHHhCcHhHHhCcccCCCC-CCCCCCCC-CCC-------CCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEch
Confidence 6777776 444445555553 34444332 333 3567899999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccC--------------------------C---------ch
Q 019023 202 GAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK--------------------------S---------PS 246 (347)
Q Consensus 202 Ga~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~--------------------------~---------~d 246 (347)
|++++|++||+||+|+.|++|+||||+||+|+++++...... . ++
T Consensus 155 G~~~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d 234 (629)
T 2o1x_A 155 GSLTGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKN 234 (629)
T ss_dssp TGGGSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC------------------------------------
T ss_pred hhhhccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999998765531100 0 03
Q ss_pred Hh---------h--hcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 019023 247 YY---------K--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (347)
Q Consensus 247 ~~---------~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (347)
+. + .++|++++ +|||||+.++.+++++|++ .++|+|||++|+|++||+
T Consensus 235 ~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~---~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 235 STRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD---LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp ---------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT---SSSEEEEEEECCTTTTCH
T ss_pred HHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh---cCCCEEEEEEEecCCCCC
Confidence 21 3 35899998 9999999999999988764 289999999999999997
No 11
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.95 E-value=1.2e-26 Score=243.60 Aligned_cols=234 Identities=18% Similarity=0.168 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHh--cCCC-------CCeEEc--CCcc---hHHHHhcCC--CHH
Q 019023 72 ATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEA--GITK-------KDSIIT--AYRD---HCTFLGRGG--TLL 135 (347)
Q Consensus 72 ~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~--~l~~-------~D~i~~--~yR~---~~~~l~~G~--~~~ 135 (347)
..+|.+-..+...... |+.-++.|.--+.+++.. .+++ .|.++. .|.+ +++.+..|. +.+
T Consensus 13 ~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~~ 88 (680)
T 1gpu_A 13 STIRILAVDTVSKANS----GHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDLSIE 88 (680)
T ss_dssp HHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHcCC----CccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCCCHH
Confidence 4566655444332222 433346677777777764 4543 577654 5777 566666666 344
Q ss_pred HHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcccc
Q 019023 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAAN 205 (347)
Q Consensus 136 ~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa~~ 205 (347)
++ .. +.+.. |+ -+.|......++...+|++|+++|.|+|+|+|.++.+ .+++|||++|||+++
T Consensus 89 ~l-~~-~r~~g----~~-~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~ 161 (680)
T 1gpu_A 89 DL-KQ-FRQLG----SR-TPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ 161 (680)
T ss_dssp HH-TT-TTCTT----CS-CCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HH-Hh-hcccC----CC-CCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc
Confidence 32 11 11111 11 1234333335788899999999999999999998654 378999999999999
Q ss_pred cchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceE-EecCC-CHHHHHHHHHHHHHHhcc
Q 019023 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGM-DALAVKQACKFAKEHALK 280 (347)
Q Consensus 206 ~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG~-D~~av~~a~~~A~~~ar~ 280 (347)
+|++||++|+|+.|+|| +|+||+||+|+++.+..... .+++.++ +||++++ +|||| |+.++++|+++|++ ..
T Consensus 162 eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~--~~ 238 (680)
T 1gpu_A 162 EGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL--SK 238 (680)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH--CT
T ss_pred hhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--CC
Confidence 99999999999999999 88999999999988766443 4577665 5899999 99999 99999999999986 13
Q ss_pred CCCEEEEEEEecCCCCCCCCCC---CCCCCHHHHHHHHhCCCh
Q 019023 281 NGPMILEMDTYRYHGHSMSDPG---STYRTRDEISGVRQERDP 320 (347)
Q Consensus 281 ~gP~lIe~~t~R~~GHs~~D~~---~~Yr~~~e~~~~~~~~DP 320 (347)
++|+||+++|+|++||++.|+. ..||+++|+++|++ +++
T Consensus 239 ~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~ 280 (680)
T 1gpu_A 239 DKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFG 280 (680)
T ss_dssp TSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTT
T ss_pred CCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcC
Confidence 8999999999999999987763 56999999999974 443
No 12
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.94 E-value=5.2e-27 Score=245.30 Aligned_cols=233 Identities=19% Similarity=0.190 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHh---cCC-------CCCeEEc--CCcc---hHHHHhcCC--CH
Q 019023 72 ATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEA---GIT-------KKDSIIT--AYRD---HCTFLGRGG--TL 134 (347)
Q Consensus 72 ~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~---~l~-------~~D~i~~--~yR~---~~~~l~~G~--~~ 134 (347)
..+|.+-..+...... |+.-++.|.--+.+++.. .++ +.|.++. .|.+ +.+.+..|. +.
T Consensus 13 ~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 13 NAIRFLAIDAVEKARS----GHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHcCC----CccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCH
Confidence 3556554433332222 433345676666666652 333 3477654 5777 666666666 34
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcC-CCCCcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcc
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGA 203 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa 203 (347)
++ |.. +-+..+.+ +.|... ...++..++|++|+++|.|+|+|+|.++.+ .+++|||++|||+
T Consensus 89 ~~-l~~-~r~~~~~~-----~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~ 161 (651)
T 2e6k_A 89 EE-LKS-FRQWGSKT-----PGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD 161 (651)
T ss_dssp HH-HTT-TTSTTCSC-----CSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HH-HHH-hhccCCCC-----CCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh
Confidence 33 211 11111111 112211 113778899999999999999999998754 5789999999999
Q ss_pred cccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhc
Q 019023 204 ANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHAL 279 (347)
Q Consensus 204 ~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar 279 (347)
+++|++||++++|+.++|| +|+||+||+|+++.+..... .+++.++ ++|++++ +|||||+.++++|+++|++
T Consensus 162 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--- 237 (651)
T 2e6k_A 162 LMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--- 237 (651)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH---
T ss_pred hchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH---
Confidence 9999999999999999999 88999999999988766554 5677764 5999999 9999999999999999876
Q ss_pred cCCCEEEEEEEecCCCCCCCCCCCCC----CCHHHHHHHHhCCChH
Q 019023 280 KNGPMILEMDTYRYHGHSMSDPGSTY----RTRDEISGVRQERDPI 321 (347)
Q Consensus 280 ~~gP~lIe~~t~R~~GHs~~D~~~~Y----r~~~e~~~~~~~~DPi 321 (347)
.++|+||+++|+|++||++.|+ ..| ++++|+++|++ ++|+
T Consensus 238 ~~~P~lI~~~t~kg~G~~~~~~-~~~H~~~~~~~e~~~~~~-~~~~ 281 (651)
T 2e6k_A 238 DERPTLIAVRSHIGFGSPKQDS-AKAHGEPLGPEAVEATRR-NLGW 281 (651)
T ss_dssp SSSCEEEEEECCTTTTSTTTTS-GGGTSSCCHHHHHHHHHH-HHTC
T ss_pred CCCCEEEEEEeEeccccccccc-ccccccCCCHHHHHHHHH-HcCC
Confidence 4899999999999999995444 334 57899999874 5654
No 13
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.94 E-value=7.5e-26 Score=237.22 Aligned_cols=231 Identities=19% Similarity=0.164 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHH-hc--CCC-------CCeEEc--CCcc---hHHHHhcCC--CH
Q 019023 72 ATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGME-AG--ITK-------KDSIIT--AYRD---HCTFLGRGG--TL 134 (347)
Q Consensus 72 ~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~-~~--l~~-------~D~i~~--~yR~---~~~~l~~G~--~~ 134 (347)
..+|.+-..+...... |+..++.|.--+.+++. .. +++ .|.++. .|.+ +++....|. +.
T Consensus 9 ~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~~ 84 (669)
T 2r8o_A 9 NAIRALSMDAVQKAKS----GHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (669)
T ss_dssp HHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHcCC----CccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 3556654443332222 43334667777777676 33 333 576554 5776 555555665 44
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcCCcCC-CCCcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcc
Q 019023 135 LEVFSELMGRKDGCSHGKGGSMHFYKK-DSGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGA 203 (347)
Q Consensus 135 ~~~~~el~g~~~g~~~Grggs~H~~~~-~~~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa 203 (347)
+++ .. +.+..+.+ +.|.... ..++..++|++|+++|.|+|+|+|.++.+ .+++|||++|||+
T Consensus 85 ~~l-~~-~r~~~~~~-----~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~ 157 (669)
T 2r8o_A 85 EEL-KN-FRQLHSKT-----PGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (669)
T ss_dssp HHH-TT-TTSTTCSC-----CSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHH-HH-hhcCCCCC-----CCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH
Confidence 432 11 11111111 1233211 24778899999999999999999998653 3789999999999
Q ss_pred cccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhc
Q 019023 204 ANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHAL 279 (347)
Q Consensus 204 ~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar 279 (347)
+++|++||++++|+.++|| +|+||+||+|+++.+..... .+++.++ ++|++++ +|||||+.++++|+++|++ .
T Consensus 158 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~ 234 (669)
T 2r8o_A 158 MMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA--V 234 (669)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--C
T ss_pred hcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh--c
Confidence 9999999999999999999 88999999999988766443 4577664 5999999 9999999999999999986 1
Q ss_pred cCCCEEEEEEEecCCCCCC-CCCC---CCCCCHHHHHHHHh
Q 019023 280 KNGPMILEMDTYRYHGHSM-SDPG---STYRTRDEISGVRQ 316 (347)
Q Consensus 280 ~~gP~lIe~~t~R~~GHs~-~D~~---~~Yr~~~e~~~~~~ 316 (347)
.++|+||+++|+|+.||+. .|+. ..||+++|++.|++
T Consensus 235 ~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 235 TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 3899999999999999994 5543 46999999998874
No 14
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.8e-25 Score=234.40 Aligned_cols=209 Identities=16% Similarity=0.144 Sum_probs=153.5
Q ss_pred CChhHHHHHHHHh-cCC---------CCCeEEc--CCcc---hHHHHhcCC--CHHHHHHHHhCCCCCCCCCCCCCcCCc
Q 019023 97 YDGQEAVAIGMEA-GIT---------KKDSIIT--AYRD---HCTFLGRGG--TLLEVFSELMGRKDGCSHGKGGSMHFY 159 (347)
Q Consensus 97 ~~GqEa~~vg~~~-~l~---------~~D~i~~--~yR~---~~~~l~~G~--~~~~~~~el~g~~~g~~~Grggs~H~~ 159 (347)
+.|.--+.+++.. .|+ +.|.++. .|.+ ++++...|. +.+++ .. |-+..+. -+.|.-
T Consensus 49 ~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l-~~-fr~~gs~-----~~ghp~ 121 (700)
T 3rim_A 49 AMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGGFGLELSDI-ES-LRTWGSK-----TPGHPE 121 (700)
T ss_dssp HHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTTSSCCHHHH-TT-TTSTTCS-----CCSSCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhCCCCCHHHH-HH-hhcCCCC-----CCCCCC
Confidence 4566556666654 675 3687664 5777 445555664 55542 11 1111110 012322
Q ss_pred C-CCCCcccCcccccchhHHHHHHHHHHHhC-------------CCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eE
Q 019023 160 K-KDSGFYGGHGIVGAQIPLGCGLAFAQKYS-------------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AI 224 (347)
Q Consensus 160 ~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~~-------------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi 224 (347)
. ...++..++|++|+++|.|+|+|+|.|+. +.+++|+|++|||++++|++|||+|+|+.|+|| +|
T Consensus 122 ~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli 201 (700)
T 3rim_A 122 FRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLI 201 (700)
T ss_dssp BTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred CCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEE
Confidence 1 12367788999999999999999999974 467899999999999999999999999999998 99
Q ss_pred EEEecCCcccccccccccCCchHhhh--cCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 019023 225 LVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (347)
Q Consensus 225 ~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~ 301 (347)
+||+||+|+++++..... ..++.++ +||++++.| ||||+.+|++|+++|++ ..++|+||+++|+|++||+....
T Consensus 202 ~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~--~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 202 VFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA--VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp EEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--CCSSCEEEEEECCTTTTCTTTTT
T ss_pred EEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH--cCCCCEEEEEEEEeeecCCccCC
Confidence 999999999988876543 4566664 589999999 99999999999999976 13899999999999999986443
Q ss_pred CC--C--CCCHHHHHHHH
Q 019023 302 GS--T--YRTRDEISGVR 315 (347)
Q Consensus 302 ~~--~--Yr~~~e~~~~~ 315 (347)
.. + -.+++|++.++
T Consensus 279 ~~~~Hg~~~~~e~~~~~~ 296 (700)
T 3rim_A 279 TGKAHGAALGDDEVAAVK 296 (700)
T ss_dssp SHHHHHSCCCHHHHHHHH
T ss_pred CccccCCCCCHHHHHHHH
Confidence 21 1 23567776654
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.93 E-value=3.6e-25 Score=232.25 Aligned_cols=245 Identities=19% Similarity=0.177 Sum_probs=172.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHH---hcCC-------CCCeEE-c-CCc
Q 019023 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGME---AGIT-------KKDSII-T-AYR 122 (347)
Q Consensus 55 ~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~---~~l~-------~~D~i~-~-~yR 122 (347)
....|+.++|.++ ...+|.+-..+...... |+.-++.|.-.+.+++. ..++ +.|.++ . .|.
T Consensus 7 ~~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~----GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~ 79 (675)
T 1itz_A 7 QGKAATGELLEKS---VNTIRFLAIDAVEKANS----GHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHG 79 (675)
T ss_dssp ---CCCHHHHHHH---HHHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGG
T ss_pred ccCCCCHHHHHHH---HHHHHHHHHHHHHHcCC----CccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcch
Confidence 4467889988764 34667665544433222 43334667766766665 2343 347655 3 577
Q ss_pred c---hHHHHhcCC---CHHHHHHHHhCCCCCCCCCCCCCcCCcC-CCCCcccCcccccchhHHHHHHHHHHHhCC-----
Q 019023 123 D---HCTFLGRGG---TLLEVFSELMGRKDGCSHGKGGSMHFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSK----- 190 (347)
Q Consensus 123 ~---~~~~l~~G~---~~~~~~~el~g~~~g~~~Grggs~H~~~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~----- 190 (347)
+ +.+....|. +.++ |.. +-+.. ++ -+.|... .-.++..++|++|+++|.|+|+|+|.++.+
T Consensus 80 ~~~lYa~l~l~G~~~~~~~~-l~~-~r~~~----~~-~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~ 152 (675)
T 1itz_A 80 CMLQYALLHLAGYDSVKEED-LKQ-FRQWG----SR-TPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNK 152 (675)
T ss_dssp HHHHHHHHHHHTCTTCCHHH-HTT-TTSTT----CS-SCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCB
T ss_pred HHHHHHHHHHcCCCCCCHHH-HHh-cccCC----CC-CCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccc
Confidence 7 556566665 2232 211 11111 11 0122211 113677889999999999999999998765
Q ss_pred -----CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceE-EecC
Q 019023 191 -----DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGL-KVDG 261 (347)
Q Consensus 191 -----~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG 261 (347)
++++|||++|||++++|++||++++|+.++|| +|+||+||+|+++.+..... .+++.++ ++|++++ +|||
T Consensus 153 ~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG 231 (675)
T 1itz_A 153 PDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNG 231 (675)
T ss_dssp TTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCT
T ss_pred cccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecC
Confidence 68899999999999999999999999999995 88999999999988766544 5677664 5999998 9999
Q ss_pred C-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC----CCCCHHHHHHHHh
Q 019023 262 M-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS----TYRTRDEISGVRQ 316 (347)
Q Consensus 262 ~-D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~----~Yr~~~e~~~~~~ 316 (347)
| |+.++.+|+++|++. .++|+||+++|+|++||+...++. .+.+++|++++++
T Consensus 232 ~~d~~~l~~al~~a~~~--~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~~ 289 (675)
T 1itz_A 232 NTGYDDIRAAIKEAKAV--TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATRQ 289 (675)
T ss_dssp TTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHHH
Confidence 9 999999999998862 389999999999999998543321 2457788777764
No 16
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.93 E-value=5.5e-25 Score=230.66 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=131.1
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCC----------CCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~ 232 (347)
++..++|+||+++|.|+|+|+|.++.+ .+++|+|++|||++++|++||++++|+.|+|| +|+||+||+|
T Consensus 110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~ 189 (673)
T 1r9j_A 110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI 189 (673)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 677889999999999999999998754 57899999999999999999999999999999 8899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceE-EecC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC---CCC
Q 019023 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDG-MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG---STY 305 (347)
Q Consensus 233 ~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~---~~Y 305 (347)
+++.+..... ..++.++ ++|++++ .||| ||+.++++|+++|++. .++|+||+++|+|++||++.|.. ..+
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~--~~~P~lI~~~T~kg~G~~~~~~~~~H~~~ 266 (673)
T 1r9j_A 190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKAT--KGKPKMIVQTTTIGFGSSKQGTEKVHGAP 266 (673)
T ss_dssp CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc--CCCCEEEEEecccccccccCCCcccccCC
Confidence 9988776654 5677765 5999999 9999 9999999999998761 38999999999999999965542 246
Q ss_pred CCHHHHHHHHh
Q 019023 306 RTRDEISGVRQ 316 (347)
Q Consensus 306 r~~~e~~~~~~ 316 (347)
++++|++.+++
T Consensus 267 ~~~ee~~~~~~ 277 (673)
T 1r9j_A 267 LGEEDIANIKA 277 (673)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 78999988874
No 17
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.93 E-value=4.2e-25 Score=229.70 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC---------CCCeEEc--CCcc---hH
Q 019023 60 TPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT---------KKDSIIT--AYRD---HC 125 (347)
Q Consensus 60 s~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~~~l~---------~~D~i~~--~yR~---~~ 125 (347)
+.++|.++- ..+|.+-..+...... |+.-.+.|.-.+.+++...|+ +.|.++. .|.+ +.
T Consensus 2 ~~~~l~~~a---~~iR~~~i~~v~~a~~----GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa 74 (632)
T 3l84_A 2 NIQILQEQA---NTLRFLSADMVQKANS----GHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYS 74 (632)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHTC----SCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHH
T ss_pred CHHHHHHHH---HHHHHHHHHHHHhcCC----CCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHH
Confidence 345555543 4566654443332222 433346677777777766675 4687665 5777 66
Q ss_pred HHHhcCC--CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCC-------CceEE
Q 019023 126 TFLGRGG--TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-------ETVTF 196 (347)
Q Consensus 126 ~~l~~G~--~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~-------~~~vv 196 (347)
+....|. +.+++ .. +-+..+.+ +.|.-....++..++|++|+++|.|+|+|+|.++.+. +++||
T Consensus 75 ~l~l~G~~~~~~~l-~~-~r~~~s~~-----~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~ 147 (632)
T 3l84_A 75 FLHLSGYDLSLEDL-KN-FRQLHSKT-----PGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIY 147 (632)
T ss_dssp HHHHHTCSCCHHHH-TT-TTCTTCSS-----CSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEE
T ss_pred HHHHhCCCCCHHHH-HH-HhcCCCCC-----CCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEE
Confidence 6666675 44442 22 11111111 1122212246778899999999999999999987643 78999
Q ss_pred EEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHH
Q 019023 197 ALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKF 273 (347)
Q Consensus 197 ~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~ 273 (347)
|++|||++++|++||++++|+.|+|| +|+|++||+|+++.+..... .+++.++ ++|+++++|||||+.++.+|+++
T Consensus 148 ~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~ 226 (632)
T 3l84_A 148 CLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQ 226 (632)
T ss_dssp EEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHH
T ss_pred EEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHH
Confidence 99999999999999999999999998 88999999999988766543 4566664 59999999999999999999988
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCCCCCC--CCCC--CHHHHHHHH
Q 019023 274 AKEHALKNGPMILEMDTYRYHGHSMSDPG--STYR--TRDEISGVR 315 (347)
Q Consensus 274 A~~~ar~~gP~lIe~~t~R~~GHs~~D~~--~~Yr--~~~e~~~~~ 315 (347)
|++ .++|+||+++|+|++||+...+. .++. +++|++..+
T Consensus 227 A~~---~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~~ 269 (632)
T 3l84_A 227 AKK---STKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAK 269 (632)
T ss_dssp HHT---CSSCEEEEEECCTTTTCGGGTTCGGGSSSCCCHHHHHHHH
T ss_pred HHh---CCCCEEEEEeeEeeecCCCCCCcccccCCCCCHHHHHHHH
Confidence 864 38999999999999999853322 1222 466666543
No 18
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.93 E-value=1.4e-24 Score=225.45 Aligned_cols=230 Identities=19% Similarity=0.233 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHH-hcCC---------CCCeEEc--CCcc--
Q 019023 58 ETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGME-AGIT---------KKDSIIT--AYRD-- 123 (347)
Q Consensus 58 ~ls~e~l~~ly~~M~~~R~~e~~~~~l~~~~~~~Gf~~~~~GqEa~~vg~~-~~l~---------~~D~i~~--~yR~-- 123 (347)
.+++....+|-.....+|.+-..+.. +.| .|+.-++.|.-.+.+++. ..++ +.|.++. .|.+
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~--~~~--~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ 79 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATT--AAG--SGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPI 79 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH--HHT--CSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHH--hcC--CCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHH
Confidence 34455555554445677776544433 222 133333566655666664 3342 3687664 4665
Q ss_pred -hHHHHhcCC-CHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCC-CceEEEEeC
Q 019023 124 -HCTFLGRGG-TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYG 200 (347)
Q Consensus 124 -~~~~l~~G~-~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~-~~~vv~~~G 200 (347)
+++....|. +.++ |..+ | ..|.+-+.|......++..++|++|+++|+|+|+|+|.++.+. +++|||++|
T Consensus 80 ly~~~~l~G~~~~~~-l~~~--r----~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~G 152 (616)
T 3mos_A 80 LYAVWAEAGFLAEAE-LLNL--R----KISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLG 152 (616)
T ss_dssp HHHHHHHTTSSCGGG-GGGT--T----CTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEE
T ss_pred HHHHHHHcCCCCHHH-HHHh--c----cCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 234334554 2222 1111 0 1111112333222235556899999999999999999986555 589999999
Q ss_pred CcccccchHHHHHHHHHHcCCC-eEEEEecCCcccccccccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHH
Q 019023 201 DGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEH 277 (347)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ 277 (347)
||++++|++||+||+|+.|+|| +|+|++||+|+++.+.......++|.++ ++|+++++|||||+.++.++++++
T Consensus 153 DG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~--- 229 (616)
T 3mos_A 153 DGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA--- 229 (616)
T ss_dssp TGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC---
T ss_pred ccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc---
Confidence 9999999999999999999998 6788899999998876655545677664 599999999999999999998543
Q ss_pred hccCCCEEEEEEEecCCCCCCCCCCC
Q 019023 278 ALKNGPMILEMDTYRYHGHSMSDPGS 303 (347)
Q Consensus 278 ar~~gP~lIe~~t~R~~GHs~~D~~~ 303 (347)
.++|+||+++|+|++||+..+++.
T Consensus 230 --~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 230 --KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp --CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred --CCCCEEEEEEEecccccccccCch
Confidence 389999999999999998765543
No 19
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.93 E-value=1.3e-24 Score=232.86 Aligned_cols=264 Identities=15% Similarity=0.039 Sum_probs=173.1
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccccCCChhHHHHHHHH-hcCC------CCCeE
Q 019023 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYK--AKLVRGFCHLYDGQEAVAIGME-AGIT------KKDSI 117 (347)
Q Consensus 47 ~~~~~~~~~~~~ls~e~l~~ly~~M~~~R~~e~~~~~l~~--~~~~~Gf~~~~~GqEa~~vg~~-~~l~------~~D~i 117 (347)
..+|..|.+.......+|.+-+. ..+|.+-..+...-. ..++.|+..++.|.-.+.+++. ..|+ ++|+|
T Consensus 60 l~~i~~~~~~~~p~d~~l~~~la--~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V 137 (886)
T 2qtc_A 60 INTIPVEEQPEYPGNLELERRIR--SAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLV 137 (886)
T ss_dssp SCSSCGGGCCCCCSCHHHHHHHH--HHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEE
T ss_pred hhhCCCccccCCCchHHHHHHHH--HHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEE
Confidence 45554444444444455653333 355655443333211 2344565555666655555544 4467 57877
Q ss_pred Ec-CCcc---hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCcCCCCCcccCcccccchhHHHHHHHHHHHh-----
Q 019023 118 IT-AYRD---HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKY----- 188 (347)
Q Consensus 118 ~~-~yR~---~~~~l~~G~~~~~~~~el~g~~~g~~~Grggs~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~----- 188 (347)
+. .|.+ +++.+..|.-..+-|..+. + .+...|-.+..|...-..++...+|++|.+++.|+|+|+|.|+
T Consensus 138 ~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fR-q-~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~ 215 (886)
T 2qtc_A 138 YFQGHISPGVYARAFLEGRLTQEQLDNFR-Q-EVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 215 (886)
T ss_dssp ECCGGGHHHHHHHHHHTTSSCHHHHTTBT-C-CTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEcchhHHHHHHHHHHhCCCCHHHHHhcc-C-CCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccc
Confidence 66 5777 6667777863323232221 1 1111122121121111113667899999999999999999998
Q ss_pred --CCCCceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCccccccccccc-CCchHhh--hcCCcceEEe---
Q 019023 189 --SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKV--- 259 (347)
Q Consensus 189 --~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~~~~~~~~~~~-~~~d~~~--~g~gipg~~V--- 259 (347)
++.++.|||++|||++++|++|||+|+|+.++|| +||||+||+++++.+..... ...++.+ +++|++.++|
T Consensus 216 ~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g 295 (886)
T 2qtc_A 216 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 295 (886)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred cccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecc
Confidence 7788999999999999999999999999999997 89999999999988765421 2234444 3578877877
Q ss_pred ------------------------------------------------------------------cCCCHHHHHHHHHH
Q 019023 260 ------------------------------------------------------------------DGMDALAVKQACKF 273 (347)
Q Consensus 260 ------------------------------------------------------------------DG~D~~av~~a~~~ 273 (347)
||||+.+|++|++.
T Consensus 296 ~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~ 375 (886)
T 2qtc_A 296 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 375 (886)
T ss_dssp TTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHH
T ss_pred hhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHH
Confidence 79999999999999
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCC--CCCCC----CCCCHHHHHHHHh
Q 019023 274 AKEHALKNGPMILEMDTYRYHGHSM--SDPGS----TYRTRDEISGVRQ 316 (347)
Q Consensus 274 A~~~ar~~gP~lIe~~t~R~~GHs~--~D~~~----~Yr~~~e~~~~~~ 316 (347)
|+++ +++|+||+++|+|++||+. .++.. .|++.+|++.+++
T Consensus 376 A~~~--~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~ 422 (886)
T 2qtc_A 376 AQET--KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRD 422 (886)
T ss_dssp HHHC--CSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHH
T ss_pred HHHc--CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHHH
Confidence 9874 3699999999999999973 33322 2888999998874
No 20
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.92 E-value=9.5e-25 Score=228.24 Aligned_cols=149 Identities=20% Similarity=0.238 Sum_probs=120.2
Q ss_pred CcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCCc
Q 019023 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (347)
Q Consensus 164 ~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~~ 232 (347)
++..++|++|+++|.|+|+|+|.++.+. +++|+|++|||++++|++||+|++|+.|+|| +|+|++||+|
T Consensus 110 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~ 189 (663)
T 3kom_A 110 GVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNI 189 (663)
T ss_dssp TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-
T ss_pred CcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 6677899999999999999999987543 7899999999999999999999999999999 7899999999
Q ss_pred ccccccccccCCchHhhh--cCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC--CCCC-
Q 019023 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG--STYR- 306 (347)
Q Consensus 233 ~~~~~~~~~~~~~d~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~--~~Yr- 306 (347)
+++.+..... .+++.++ +||++++ +|||||+.++.+|+++|++. .++|+||+++|+|++||+...+. .++.
T Consensus 190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~--~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~ 266 (663)
T 3kom_A 190 SIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ--QQKPTLICCKTVIGFGSPEKAGTASVHGSP 266 (663)
T ss_dssp ----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC--SSSCEEEEEECCTTTTCTTTTTCSSTTSSC
T ss_pred ccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc--CCCCEEEEEecccccccCCCCCCccccCCC
Confidence 9988766543 4577765 5999999 99999999999999988762 38999999999999999864332 2232
Q ss_pred -CHHHHHHHH
Q 019023 307 -TRDEISGVR 315 (347)
Q Consensus 307 -~~~e~~~~~ 315 (347)
+++|++..+
T Consensus 267 l~~e~~~~~~ 276 (663)
T 3kom_A 267 LSDQERASAA 276 (663)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 466666543
No 21
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.92 E-value=2.1e-24 Score=226.76 Aligned_cols=149 Identities=22% Similarity=0.254 Sum_probs=113.8
Q ss_pred CCcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEEecCC
Q 019023 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (347)
Q Consensus 163 ~~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv~NN~ 231 (347)
.++...+|++|+++|.|+|+|+|.++.+. +++|||++|||++++|+++|+|++|+.|+|| +|+|++||+
T Consensus 148 ~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~ 227 (711)
T 3uk1_A 148 PGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNG 227 (711)
T ss_dssp TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCC
Confidence 36677899999999999999999987543 7899999999999999999999999999999 889999999
Q ss_pred cccccccccccCCchHhhh--cCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCC--
Q 019023 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYR-- 306 (347)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr-- 306 (347)
|+++.+..... .+|+.++ +||+++++ |||||+.++.+|+++|++ .++|+||+++|+|++||+...++..|.
T Consensus 228 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~---~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~ 303 (711)
T 3uk1_A 228 ISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR---SDKPSLICCKTRIGNGAATKAGGHDVHGA 303 (711)
T ss_dssp EETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHTT---CSSCEEEEEEC------------------
T ss_pred cccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh---CCCCEEEEEccccccCCCCCCCcccccCC
Confidence 99987766543 4577665 59999998 899999999999988754 389999999999999998543332222
Q ss_pred --CHHHHHHHH
Q 019023 307 --TRDEISGVR 315 (347)
Q Consensus 307 --~~~e~~~~~ 315 (347)
+++|++..+
T Consensus 304 ~l~~e~~~~~~ 314 (711)
T 3uk1_A 304 PLGADEIAKTR 314 (711)
T ss_dssp --CHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 456666544
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.91 E-value=1.5e-23 Score=219.88 Aligned_cols=209 Identities=21% Similarity=0.204 Sum_probs=149.7
Q ss_pred CChhHHHHHHHH-hcCC---------CCCeEEc--CCcc---hHHHHhcCC--CHHHHHHHHhCCCCCCCCCCCCCcCCc
Q 019023 97 YDGQEAVAIGME-AGIT---------KKDSIIT--AYRD---HCTFLGRGG--TLLEVFSELMGRKDGCSHGKGGSMHFY 159 (347)
Q Consensus 97 ~~GqEa~~vg~~-~~l~---------~~D~i~~--~yR~---~~~~l~~G~--~~~~~~~el~g~~~g~~~Grggs~H~~ 159 (347)
+.|.-.+.+++. ..|+ +.|.++. .|.+ +++....|. +.+++ .. +-+..+.+ +.|.-
T Consensus 56 ~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l-~~-~rq~gs~~-----~Ghp~ 128 (690)
T 3m49_A 56 PMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDL-KN-FRQWGSKT-----PGHPE 128 (690)
T ss_dssp HHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTSSCCHHHH-TT-TTCTTCSS-----CSSCC
T ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHHHHHHCCCCCHHHH-Hh-hccCCCCC-----CCCCC
Confidence 556666666665 4665 4687664 5666 344445564 45542 11 11111111 11221
Q ss_pred C-CCCCcccCcccccchhHHHHHHHHHHHhCCC----------CceEEEEeCCcccccchHHHHHHHHHHcCCC-eEEEE
Q 019023 160 K-KDSGFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVC 227 (347)
Q Consensus 160 ~-~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vi~vv 227 (347)
. ...++..++|++|+++|.|+|+|+|.++.+. ++.|+|++|||++++|++||++++|+.|+|| +|+|+
T Consensus 129 ~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~ 208 (690)
T 3m49_A 129 YGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLY 208 (690)
T ss_dssp TTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEE
Confidence 1 1135677899999999999999999986542 7899999999999999999999999999998 78999
Q ss_pred ecCCcccccccccccCCchHhhh--cCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC-
Q 019023 228 ENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS- 303 (347)
Q Consensus 228 ~NN~~~~~~~~~~~~~~~d~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~- 303 (347)
+||+|+++.+..... .+++.++ ++|++++.| ||||+.++.+|+++|++. .++|+||+++|+|++|++...++.
T Consensus 209 dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~--~~~P~lI~v~T~kG~G~~~~~~~~~ 285 (690)
T 3m49_A 209 DSNDISLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD--EKRPTLIEVRTTIGFGSPNKSGKSA 285 (690)
T ss_dssp EECSBCSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC--CSSCEEEEEECCTTTTCTTTTTSGG
T ss_pred ECCCeecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc--CCCCEEEEEEeecccccCcccCccc
Confidence 999999988765443 4566664 589999999 999999999999888751 289999999999999998543322
Q ss_pred -CCC--CHHHHHHHH
Q 019023 304 -TYR--TRDEISGVR 315 (347)
Q Consensus 304 -~Yr--~~~e~~~~~ 315 (347)
+.. +++|++..+
T Consensus 286 ~Hg~~~~~e~~~~~~ 300 (690)
T 3m49_A 286 SHGSPLGVEETKLTK 300 (690)
T ss_dssp GTSSCCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 122 456666554
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.88 E-value=5.1e-23 Score=213.29 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=124.7
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc--------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~-------- 238 (347)
+.|++|+++|.|+|++++. ++++|||++|||+++++ +++|++|+.+++|+++||.||+ |++.+..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 4689999999999999885 57899999999999986 5669999999999988877665 8873321
Q ss_pred --ccccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEE---ecCCCCCCCCCCCCCCCHH--
Q 019023 239 --WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT---YRYHGHSMSDPGSTYRTRD-- 309 (347)
Q Consensus 239 --~~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t---~R~~GHs~~D~~~~Yr~~~-- 309 (347)
......+||.++ ++|+++++|| ++.++.+++++|++. ..+||+|||+.| +|..+|...|++..||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~-~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAI-AQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADIE 568 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHH-TTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHh-cCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHHH
Confidence 112234678875 5999999998 566888888887631 138999999999 5566888888888898655
Q ss_pred HHHHHHhCCChHHHHHHHHHHcCCCCHHHH
Q 019023 310 EISGVRQERDPIERIRKLILAHDLATEKEL 339 (347)
Q Consensus 310 e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~ 339 (347)
++.+|. ++||+++|+++|.++|++++++.
T Consensus 569 ~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 569 AFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 666665 58999999999999999998754
No 24
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.63 E-value=4.4e-16 Score=160.84 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=98.3
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccccc-----
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRA----- 241 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~~----- 241 (347)
+.|+||+++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++....+..
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 5799999999999999985 57889999999999986 478999999999987666555 78887543211
Q ss_pred ----cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 242 ----AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 242 ----~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
...+||.++ +||+++++|+ ++.++.+++++|++.+|.+||+|||+.|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEecccc
Confidence 134678775 5999999998 68899999999998655589999999999865
No 25
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.62 E-value=5e-16 Score=161.06 Aligned_cols=120 Identities=24% Similarity=0.255 Sum_probs=97.1
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc-----
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~----- 240 (347)
+++|++|+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++......
T Consensus 439 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 512 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMD 512 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCC
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 45799999999999999986 57899999999999986 567999999999987666555 5887543110
Q ss_pred -----------ccC----CchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 019023 241 -----------AAK----SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (347)
Q Consensus 241 -----------~~~----~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (347)
... .+||.+. +||+++++|+ ++.++.+++++|+++++. +||+|||+.|.|..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 513 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp CSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred ccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 011 2577765 5999999997 677999999999987776 99999999999876
No 26
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.58 E-value=8.8e-16 Score=157.49 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=94.2
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+|+|.+.++.+++|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 487 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQY 487 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCc
Confidence 45799999999999999999887788999999999999884 566999999999987766555 588754321
Q ss_pred cccCCchHhhh--cCCcc---eEEecCCCHHHHHHHHH-HHHHHhcc-CCCEEEEEEEec
Q 019023 240 RAAKSPSYYKR--GDYVP---GLKVDGMDALAVKQACK-FAKEHALK-NGPMILEMDTYR 292 (347)
Q Consensus 240 ~~~~~~d~~~~--g~gip---g~~VDG~D~~av~~a~~-~A~~~ar~-~gP~lIe~~t~R 292 (347)
.....+||.++ +||++ +++|+ ++.++.++++ ++++ . ++|+|||+.|++
T Consensus 488 ~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 488 NEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp GCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 11134577765 59999 99998 5778888887 5553 3 579999999975
No 27
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.58 E-value=1.3e-15 Score=155.00 Aligned_cols=113 Identities=30% Similarity=0.396 Sum_probs=90.6
Q ss_pred ccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccccc--------
Q 019023 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR-------- 240 (347)
Q Consensus 170 g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~-------- 240 (347)
|+||+++|.|+|+++|. ++++|||++|||+++++ +|+|++|+++++|+++||.|| +|++.+..+.
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999986 56789999999999987 688999999999988777666 5888654211
Q ss_pred --ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 241 --~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
....+||.+. +||+++++|+ +..++.+++++|++ .+||+|||+.|.+.
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~~ 526 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS---AKGPVLIEVSTVSP 526 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT---CSSCEEEEEEBCC-
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH---CCCcEEEEEEecCC
Confidence 1134578775 5999999998 56688888877764 38999999999763
No 28
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.58 E-value=1.6e-15 Score=155.93 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=92.8
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------- 239 (347)
+.|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 5699999999999999996 57899999999999885 466999999999987666555 688765322
Q ss_pred --cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 240 --~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
.....+||.++ +||+++++|+ ++.++.+++++|++ .+||+|||+.|+|.
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~~ 544 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD---VDGPAVVAIPVDYR 544 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH---SSSCEEEEEEBCCT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 12234678775 5999999998 56789999988875 38999999999864
No 29
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.58 E-value=2.3e-15 Score=154.40 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=94.0
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------- 239 (347)
+.|+||+++|.|+|+++|.| +++++|||++|||+++++ +++|++|+++++|+++|| +||+|++....+
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 492 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPN 492 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTT
T ss_pred CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 46999999999999999986 567899999999999986 467999999999987666 555688765421
Q ss_pred ccc----CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 RAA----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~~~----~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
... ..+||.++ +||+++++|+ ++.++.+++++|++ .+||+|||+.|++
T Consensus 493 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 546 (563)
T 2uz1_A 493 RVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA---HNRPACINVAVAL 546 (563)
T ss_dssp CCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH---SSSCEEEEEECCS
T ss_pred cccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH---CCCCEEEEEEecc
Confidence 111 33578775 5999999997 68899999998875 3899999999974
No 30
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.57 E-value=2.4e-15 Score=154.65 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=92.3
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~------- 239 (347)
+.|++|+++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||. ||+|++.....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 5699999999999999986 57889999999999986 4679999999999876665 55588765421
Q ss_pred ----cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ----~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.+. +||+++++|+ +..++.+++++|++ .+||+|||+.|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE---LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT---SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEECCC
Confidence 12234678775 5999999997 67899888888874 3899999999998
No 31
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.56 E-value=2e-15 Score=155.89 Aligned_cols=119 Identities=23% Similarity=0.321 Sum_probs=95.2
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Ccccccccc-------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------- 239 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~------- 239 (347)
+.|+||+++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 422 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 495 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQN 495 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCC
Confidence 4699999999999999986 57889999999999986 488999999999987666555 588765432
Q ss_pred --cccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 019023 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (347)
Q Consensus 240 --~~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (347)
.....+||.+. +||+++++|+. +.++.+++++|++ .+||+|||+.|+|..+..
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~gp~liev~~~~~~~~~ 552 (589)
T 2pgn_A 496 NWTEFMNPDWVGIAKAFGAYGESVRE--TGDIAGALQRAID---SGKPALIEIPVSKTQGLA 552 (589)
T ss_dssp CSCBCCCCCHHHHHHHHTCEEEECTT--TCCHHHHHHHHHH---HCSCEEEEEECCSSSSTT
T ss_pred ccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh---CCCCEEEEEEecCCCCcC
Confidence 12234678775 59999999984 5688889888875 389999999999876553
No 32
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.56 E-value=3.8e-15 Score=156.32 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=94.6
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. +++.|||++|||+++++ +++|++|+++++|+++|| +||+|++....+
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~ 583 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEH 583 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTT
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCC
Confidence 45689999999999999995 67899999999999884 455999999999987555 555688755321
Q ss_pred c----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 240 R----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 240 ~----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
+ ....+||.+. +||+++++|+ +..++.+++++|++ .+||+|||+.|.|...
T Consensus 584 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 584 RYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS---TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp CCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH---CSSCEEEEEEBCSSCC
T ss_pred CcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH---CCCcEEEEEEecCCcc
Confidence 1 1134678775 5999999997 68899999988875 3899999999998764
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.55 E-value=5.4e-15 Score=152.61 Aligned_cols=119 Identities=20% Similarity=0.300 Sum_probs=94.9
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------ 239 (347)
+++|++|+++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++....+
T Consensus 423 g~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 496 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKA 496 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTT
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCC
Confidence 45699999999999999986 57889999999999985 467999999999977665 555688754311
Q ss_pred ----cc--c------CCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 019023 240 ----RA--A------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (347)
Q Consensus 240 ----~~--~------~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (347)
.. . ..+||.+. ++|+++++|+ ++.++.+++++|++ .+||+|||+.|+|....
T Consensus 497 ~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 497 NRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD---TPGPYLLDVICPHQEHV 562 (590)
T ss_dssp CCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH---SSSCEEEEEECCTTCCC
T ss_pred ccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCccc
Confidence 00 1 13578765 5999999997 68899999988875 38999999999987654
No 34
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.55 E-value=3.4e-15 Score=153.33 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=92.8
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccccc----c
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----A 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~~----~ 241 (347)
++.|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++...... .
T Consensus 406 ~~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 479 (566)
T 2vbi_A 406 MQWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNY 479 (566)
T ss_dssp TTTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CcccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccC
Confidence 35799999999999999985 57899999999999885 456999999999976555 5667888664321 1
Q ss_pred cCCchHhhh--cCCc-----ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecC
Q 019023 242 AKSPSYYKR--GDYV-----PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRY 293 (347)
Q Consensus 242 ~~~~d~~~~--g~gi-----pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~ 293 (347)
...+||.+. ++|+ ++++|+ +..++.+++++|++ . +||+|||+.|.|.
T Consensus 480 ~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~---~~~gp~liev~~~~~ 534 (566)
T 2vbi_A 480 IKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA---NTRGPTLIECQIDRT 534 (566)
T ss_dssp CCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH---CCSSCEEEEEECCTT
T ss_pred CCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh---cCCCcEEEEEEeCcc
Confidence 234577664 4888 999998 68899999999886 4 8999999999863
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.54 E-value=1.1e-14 Score=149.07 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=90.7
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccccc------
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR------ 240 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~~------ 240 (347)
+.|+||.++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.+....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 5689999999999999986 57889999999999875 466999999999976555 5556887432211
Q ss_pred ---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
....+||.+. ++|+++++|+ ++.++.+++++|++ .+||+|||+.|.+..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS---IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH---SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecccc
Confidence 1134678775 5999999997 67788899988875 389999999998754
No 36
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.53 E-value=6e-15 Score=150.86 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=90.3
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+++|. ++++|||++|||+++++ +++|.+|+++++|+++||. ||+|++.....
T Consensus 405 ~~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 478 (552)
T 1ovm_A 405 PLWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRY 478 (552)
T ss_dssp TTTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred hhhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCc
Confidence 35799999999999999985 57889999999999874 5669999999999776665 55688764321
Q ss_pred cccCCchHhhh--cCCc----ceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 RAAKSPSYYKR--GDYV----PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~~~~~~d~~~~--g~gi----pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.++ +||+ ++++|+ ++.++.+++++|++ .+||+|||+.|++
T Consensus 479 ~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 532 (552)
T 1ovm_A 479 NDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVAH---HERLSLIEVMLPK 532 (552)
T ss_dssp GCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHTT---CSSEEEEEEECCT
T ss_pred ccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 11234678775 5899 899998 67888888877653 3899999999975
No 37
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.53 E-value=1.4e-14 Score=148.87 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=90.6
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW------ 239 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~------ 239 (347)
++.|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.....
T Consensus 422 ~~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~ 495 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSY 495 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGG
T ss_pred ccchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCc
Confidence 45799999999999999996 57899999999999884 456999999999977555 555788765322
Q ss_pred cccCCchHhhh--cCCcc-----eEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 RAAKSPSYYKR--GDYVP-----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 ~~~~~~d~~~~--g~gip-----g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.....+||.++ +||++ +++|+ +..++.++++++.. ..+||+|||+.|+|
T Consensus 496 ~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 551 (570)
T 2vbf_A 496 NDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQA--DVNRMYWIELVLEK 551 (570)
T ss_dssp GCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHHH--CTTSEEEEEEECCT
T ss_pred cCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 11234577775 59998 78997 68889888887521 13899999999986
No 38
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.52 E-value=1.5e-14 Score=148.57 Aligned_cols=117 Identities=22% Similarity=0.243 Sum_probs=93.1
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCccccccccc----c
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEWR----A 241 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~~----~ 241 (347)
++.|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++...... .
T Consensus 410 ~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 483 (568)
T 2wvg_A 410 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNN 483 (568)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGC
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcC
Confidence 45689999999999999996 57899999999999884 556999999999976555 6667888654321 1
Q ss_pred cCCchHhhh--cCCc---------ceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 242 AKSPSYYKR--GDYV---------PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 242 ~~~~d~~~~--g~gi---------pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
...+||.+. ++|+ ++++|+ +..++.+++++|++. .+||+|||+.|+|.
T Consensus 484 ~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~--~~gp~liev~~~~~ 542 (568)
T 2wvg_A 484 IKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN--TDGPTLIECFIGRE 542 (568)
T ss_dssp CCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC--CSSCEEEEEECCTT
T ss_pred CCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEcCcc
Confidence 234577765 4788 889997 688999999998862 28999999999863
No 39
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.51 E-value=1e-14 Score=149.80 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=91.3
Q ss_pred CcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc-----cc
Q 019023 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW-----RA 241 (347)
Q Consensus 168 ~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~-----~~ 241 (347)
+.|+||+++|.|+|+|+|. ++++|||++|||++++ .+++|++|+++++|+++|| +||+|++....+ ..
T Consensus 420 ~~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~~--~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 493 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFND 493 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHHH--HGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGB
T ss_pred ccccccccchHHHHHHHhC----CCCcEEEEEechHHHh--hHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCc
Confidence 4689999999999999996 5788999999999995 4677999999999977665 555688754321 12
Q ss_pred cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCE-EEEEEEec
Q 019023 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPM-ILEMDTYR 292 (347)
Q Consensus 242 ~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~-lIe~~t~R 292 (347)
...+||.++ +||+++++|+ +..++.+++++|++ .+||+ |||+.|++
T Consensus 494 ~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~~liev~~~~ 542 (565)
T 2nxw_A 494 LDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA---TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH---CCSSCEEEEEECCT
T ss_pred CCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEccc
Confidence 234678775 5999999998 67899999988875 37898 99999975
No 40
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.50 E-value=3.9e-14 Score=145.48 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=92.0
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-c-cccccc---cc-
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE---WR- 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~-~~~~~~---~~- 240 (347)
++.|++|+++|.|+|+++| ++++|||++|||++++. +++|++|+++++|+++||.||+ | .+.... ..
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 495 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 495 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCc
Confidence 4568999999999999998 46789999999999874 4669999999999988887776 4 432211 00
Q ss_pred ---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 019023 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (347)
Q Consensus 241 ---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (347)
....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|.|..
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~~~ 549 (568)
T 2c31_A 496 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA---SGKPCLINAMIDPDA 549 (568)
T ss_dssp CTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH---HTSCEEEEEEBCTTS
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecccc
Confidence 0234688875 5999999997 78899999998875 389999999998753
No 41
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.49 E-value=6.5e-14 Score=143.61 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=91.9
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-c-cccccc----cc
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y-GMGTAE----WR 240 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~-~~~~~~----~~ 240 (347)
+..|++|+++|.|+|+++| ++++|||++|||++++. +++|++|+++++|+++||.||+ | ++.... ..
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 490 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA 490 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC
Confidence 4569999999999999998 47889999999999874 3569999999999887776666 4 442211 00
Q ss_pred -----ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 019023 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (347)
Q Consensus 241 -----~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (347)
....+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|.|...
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 491 PSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ---SRKPTIINVVIDPAAG 547 (564)
T ss_dssp CCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH---HTSCEEEEEEBCTTSS
T ss_pred ccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeccccC
Confidence 1124678775 5999999997 68899999998875 3899999999987643
No 42
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.44 E-value=5.3e-14 Score=144.25 Aligned_cols=113 Identities=20% Similarity=0.165 Sum_probs=83.2
Q ss_pred cCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccc-------
Q 019023 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (347)
Q Consensus 167 ~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~------- 238 (347)
+..|++|. +|.|+|+++| ++++|||++|||++.+. + ++|++|+++++|+++||.||+ |++....
T Consensus 414 g~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 485 (556)
T 3hww_A 414 GASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD-L-NALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER 485 (556)
T ss_dssp SSCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT-G-GGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred cccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc-c-hhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence 45677777 9999999998 26789999999999874 3 449999999999988877776 5664321
Q ss_pred cc---ccCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 239 WR---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 239 ~~---~~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
.. ....+||.+. +||+++++|+ +..++.+++++|++ .+||+|||+.|.+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~gp~liev~~~~ 539 (556)
T 3hww_A 486 ERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAWR---TPTTTVIEMVVND 539 (556)
T ss_dssp ---CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHTT---SSSEEEEEEECCS
T ss_pred HHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 11 1235688775 5999999997 67788888877654 2899999999864
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.42 E-value=4.8e-14 Score=145.96 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=86.2
Q ss_pred cccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEE-ecCCcccccccc--------
Q 019023 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC-ENNHYGMGTAEW-------- 239 (347)
Q Consensus 169 ~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv-~NN~~~~~~~~~-------- 239 (347)
.+.+|+++|.|+|+|+|. +++|||++|||+++++ + ++|++|+++++|+++|| +||+|++.....
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~-~-~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD-L-NGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT-G-GGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH-H-HHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999994 5789999999999986 3 45999999999987666 555788743211
Q ss_pred -cc---cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 019023 240 -RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (347)
Q Consensus 240 -~~---~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (347)
+. ...+||.+. +||+++++|+ ++.++.+++++|++ .+||+|||+.|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQAD---KPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCCS---SCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCc
Confidence 11 124578775 5999999998 67788777766553 2899999999864
No 44
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.39 E-value=1.1e-12 Score=139.04 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=107.4
Q ss_pred cCCcCCCCCcccCcccccchhHHHHHHHHHHHhCCCCceEEEEeCCcccccch---HHHHHHHHHHcCCC-eEEEEecCC
Q 019023 156 MHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQ---LFEALNIAALWDLP-AILVCENNH 231 (347)
Q Consensus 156 ~H~~~~~~~~~~~~g~lG~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~---~~Ealn~Aa~~~LP-vi~vv~NN~ 231 (347)
.|....-.|+...+|+||++++.|+|+|+ .+++..|+|++|||+.++|. .||+.+++..+++. +|.|+.+|+
T Consensus 161 gHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~ 236 (845)
T 3ahc_A 161 SHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNG 236 (845)
T ss_dssp SSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECS
T ss_pred CCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCC
Confidence 34432224788889999999999999994 46788999999999999999 99999999999998 568889999
Q ss_pred ccccccccccc-CCchHhh--hcCCcceE-EecC-C--CHHHHHHHHHHHHHH-----------hcc---CCC--EEEEE
Q 019023 232 YGMGTAEWRAA-KSPSYYK--RGDYVPGL-KVDG-M--DALAVKQACKFAKEH-----------ALK---NGP--MILEM 288 (347)
Q Consensus 232 ~~~~~~~~~~~-~~~d~~~--~g~gipg~-~VDG-~--D~~av~~a~~~A~~~-----------ar~---~gP--~lIe~ 288 (347)
+.+..++.... ...++.+ +|||...+ .||| | |+.++.+++..|++. +++ ++| .+|.+
T Consensus 237 ~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~ 316 (845)
T 3ahc_A 237 YKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIF 316 (845)
T ss_dssp BSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEE
T ss_pred CcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEE
Confidence 99887765322 2334444 36887778 8999 9 999999988766532 332 589 99999
Q ss_pred EEecCC
Q 019023 289 DTYRYH 294 (347)
Q Consensus 289 ~t~R~~ 294 (347)
+|.+++
T Consensus 317 rT~kG~ 322 (845)
T 3ahc_A 317 RTPKGW 322 (845)
T ss_dssp ECCTTT
T ss_pred ECcccC
Confidence 999999
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.37 E-value=2.6e-13 Score=139.79 Aligned_cols=107 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred chhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-Cccccccc---c--c----c--
Q 019023 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE---W--R----A-- 241 (347)
Q Consensus 174 ~~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~---~--~----~-- 241 (347)
+++|.|+|+|+ ++++|||++|||++++. .++|++|+++++|+++||.|| +|++.... . . .
T Consensus 440 g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~ 511 (578)
T 3lq1_A 440 GVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFG 511 (578)
T ss_dssp SHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC----------------------
T ss_pred cHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhcc
Confidence 36999999863 47889999999999874 355999999999988777666 57875421 1 0 0
Q ss_pred -cCCchHhhh--cCCcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 242 -AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 242 -~~~~d~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
...+||.+. +||+++++|+ +..++.+++++|++ .+||+|||+.|.+.
T Consensus 512 ~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~liev~~~~~ 561 (578)
T 3lq1_A 512 TSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY---HKGLDIIEVKTNRH 561 (578)
T ss_dssp ---CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT---SSSEEEEEEC----
T ss_pred CCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh---CCCCEEEEEECCcc
Confidence 124578775 5999999997 78888888887764 38999999988763
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.88 E-value=6.7e-09 Score=115.11 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=72.7
Q ss_pred CceEEEEeCCc-ccccchHHHHHHHHHHcCCCeEEEEecCC-ccccccccccc----------------CCchHhhh--c
Q 019023 192 ETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAA----------------KSPSYYKR--G 251 (347)
Q Consensus 192 ~~~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvi~vv~NN~-~~~~~~~~~~~----------------~~~d~~~~--g 251 (347)
++.||++.||| ++.+| +. .|.+|..+++|+++||.||+ |++...+...+ ..+||.+. +
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~~-eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-YG-GLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-HH-HHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcc-hH-HHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 78887 34 49999999999887776666 67754222100 12577764 5
Q ss_pred CCcceEEe-cC-CCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 252 DYVPGLKV-DG-MDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 252 ~gipg~~V-DG-~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
+|++++.+ .- .++.++.+++++|+++ +||+||++.+.-.
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~---~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESF---PGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS---SSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhc---CCCEEEEEeecCc
Confidence 99999854 33 4899999999999874 9999999996443
No 47
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=90.97 E-value=1.6 Score=44.34 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhhc-CCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRG-DYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~g-~gi 254 (347)
-+|.|.|.+. +.-.+++|..|=|++|. .-++..|..-++|+|+|.-+-... ++... .....|....+ +--
T Consensus 57 ~~A~GyAr~t---g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~--~~Q~~d~~~~~~~tk 128 (589)
T 2pgn_A 57 WMVNGYNYVK---DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSE--AAQQVPWQSFTPIAR 128 (589)
T ss_dssp HHHHHHHHHH---TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTT--CSSCCCGGGGTTTSS
T ss_pred HHHHHHHHHH---CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCC--cccccChhhccccEE
Confidence 3466666543 45578999999999984 456888889999999998665432 21110 11111222111 112
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
....+. ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 129 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (589)
T 2pgn_A 129 STQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPF 164 (589)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEET
T ss_pred EEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCH
Confidence 224444 677788888888887776 4999998854
No 48
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=90.19 E-value=0.37 Score=46.81 Aligned_cols=107 Identities=18% Similarity=0.106 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-cc--ccccccc-cCCchHhhh
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GM--GTAEWRA-AKSPSYYKR 250 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~--~~~~~~~-~~~~d~~~~ 250 (347)
.+.+|+|+|++- .++++.+.|.|-... .|.|..++..++|+++++-+... +. ++..+.+ .....|...
T Consensus 76 a~~~a~Gaa~aG-----~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~ 147 (395)
T 1yd7_A 76 SIAAAIGASWAG-----AKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTH 147 (395)
T ss_dssp HHHHHHHHHHTT-----CCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHhC-----CcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccC
Confidence 355567766653 457788889888653 45666777899998888766543 22 2211111 001111211
Q ss_pred c-CCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 251 G-DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 251 g-~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
| ++++.+. -.++.+++..+..|.+.+++ +.|+++....+
T Consensus 148 g~~g~~vl~--p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~ 188 (395)
T 1yd7_A 148 GDHSLIVLS--PSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE 188 (395)
T ss_dssp -CCCCEEEC--CCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH
T ss_pred CCcceEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh
Confidence 2 3554443 44899999999999987777 89999988764
No 49
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=89.51 E-value=1.2 Score=45.34 Aligned_cols=105 Identities=19% Similarity=0.137 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|.|.|.+. ++-.+++|..|=|++| ..-++..|...++|+|+|+-+-....... ......|.... .+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHh
Confidence 34566766553 4456777788888887 35678888899999999986544321110 01111222221 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-....|. ++.++..++++|+..+.. .||+.|++-.
T Consensus 135 k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 2124444 677888899999887765 5899998854
No 50
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.09 E-value=0.97 Score=45.50 Aligned_cols=102 Identities=12% Similarity=0.018 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh-c-CC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR-G-DY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~-g-~g 253 (347)
-+|.|.|.+. +.-.+++|..|=|++|. .-++..|..-+.|+|+|.-+-... ++. ......|.... + +-
T Consensus 55 ~~A~GyAr~t---g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~~~~---~~~Q~~d~~~~~~~~t 125 (549)
T 3eya_A 55 FAAGAEAQLS---GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGS---GYFQETHPQELFRECS 125 (549)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGGTTS---CCTTCCCHHHHTSTTC
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhhcCC---CCCCccCHHHHHhhhh
Confidence 3466666543 44567777888888883 467888889999999998553321 111 00111232221 1 11
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
-....+. ++..+.+.+.+|+..+.. .||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 126 HYCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred heEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 1223443 566677777777776666 899999975
No 51
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=88.95 E-value=1.6 Score=44.22 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. ++-.++++..|=|++| ..-++..|..-++|+|+|.-+.... ++.. ......|.... .+-
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~--~~~Q~~d~~~~~~~~~ 133 (573)
T 2iht_A 62 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN--DTHQCLDSVAIVAPMS 133 (573)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT--TSTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc--CccccCCHHHHHHhHh
Confidence 3456666543 4445677777888887 4556888888899999998665432 2210 11111233221 122
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-....+. ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (573)
T 2iht_A 134 KYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPV 170 (573)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEH
T ss_pred hEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 2224454 677788888888887776 4999999864
No 52
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=88.85 E-value=0.97 Score=46.14 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCc-ccc--cccccccCCchHhhhcCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMG--TAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~-~~~--~~~~~~~~~~d~~~~g~g 253 (347)
-+|.|.|.+. +.-.++++..|=|++|. .-++..|..-+.|+|+|+-+-.. .++ ..++. ....+++ .+-
T Consensus 64 ~aA~GyAr~t---g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~--d~~~~~~-~~t 134 (603)
T 4feg_A 64 MAAAADAKLT---GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEM--NENPIYA-DVA 134 (603)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCC--CCGGGGT-TTC
T ss_pred HHHHHHHHHh---CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCCCccccc--cHHHHhh-hhc
Confidence 3456666543 44567777888888883 45688888999999998854322 111 11110 0011111 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (347)
.....|. ++..+.+.+.+|+..+.. .||+.|++-
T Consensus 135 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 135 DYNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp SEEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1123443 444555666666655555 899999874
No 53
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=88.61 E-value=3 Score=42.83 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVP 255 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gip 255 (347)
+.+|+|+|++ +...++++.++++.. ..++.+.+++..++|+++++.+-+++.+..........|.+-. -.+|
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l-~~iP 439 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAMF-RSVP 439 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHHH-HTST
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHHh-cCCC
Confidence 3455666654 323467788998874 3578888889999999998877666433211111112232221 1366
Q ss_pred eEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 256 GLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 256 g~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
++.| .=.|+.++..+++.|.+. ++|++|-.
T Consensus 440 ~l~V~~P~d~~e~~~~l~~a~~~---~gp~~ir~ 470 (616)
T 3mos_A 440 TSTVFYPSDGVATEKAVELAANT---KGICFIRT 470 (616)
T ss_dssp TEEEECCCSHHHHHHHHHHHHTC---CSEEEEEC
T ss_pred CCEEEecCCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 6554 344888888888887753 89987643
No 54
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=88.31 E-value=1.8 Score=43.61 Aligned_cols=105 Identities=17% Similarity=0.081 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCC-chHhhh--c
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKS-PSYYKR--G 251 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~-~d~~~~--g 251 (347)
.-+|.|.|.+. ++-.++++..|=|++|. .-++..|...++|+|+|+-+-... .+.. .... .|.... .
T Consensus 54 a~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~---~~Q~~~d~~~~~~~ 124 (563)
T 2uz1_A 54 GHAAEGYARAG---AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDDETN---TLQAGIDQVAMAAP 124 (563)
T ss_dssp HHHHHHHHHHH---TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTSC---CTTCCCCHHHHHGG
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCch---hhhhhccHHHHhhh
Confidence 34566666553 44456777778888873 456777888999999998665432 2111 0111 233221 1
Q ss_pred CCcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 019023 252 DYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (347)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (347)
+--....+. ++.++.+.+++|+..+.. .||+.|++-..
T Consensus 125 ~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 125 ITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp GCSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 222234454 677788888888877766 59999988643
No 55
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=88.07 E-value=1.5 Score=44.25 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. ++-.++++..|=|++|. .-++..|..-++|+|+|+-+-... ++.. .....|.... .+-
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~~~~---~~Q~~d~~~~~~~~t 132 (566)
T 1ozh_A 62 FMAAAVGRIT---GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADKAKQ---VHQSMDTVAMFSPVT 132 (566)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHGGGC
T ss_pred HHHHHHHHHH---CCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccCCCC---cccccCHHHHHHHHh
Confidence 4466666543 44456777778888883 456778888899999998664432 2110 0111232221 122
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (347)
-....+. ++.++.+.+++|+..+.. .||+.|++-..
T Consensus 133 k~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 133 KYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred heEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 2234554 677788888888877765 59999988643
No 56
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=87.90 E-value=1.6 Score=45.42 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~ 252 (347)
.-+|.|.|.+. +.-.+++|..|=|++|. .-++..|..-++|+|+|+-+-... ++.. .....|.... .+
T Consensus 133 a~aAdGyAr~t---Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~~g~~---a~Q~~Dq~~i~~~~ 203 (677)
T 1t9b_A 133 GHMAEGYARAS---GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSAIGTD---AFQEADVVGISRSC 203 (677)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTTTSC---CTTCCCHHHHTGGG
T ss_pred HHHHHHHHHHH---CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhhcCCC---CccccCHHHHhhhh
Confidence 34566766553 44567788888888883 456778888899999998654331 1110 0111122111 11
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (347)
--....|+ ++..+...+++|+..+.. .||+.|++-
T Consensus 204 tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 204 TKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 11224454 677888888888887765 589999986
No 57
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=87.06 E-value=3.8 Score=41.28 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccc----cccccCC-chHhh
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA----EWRAAKS-PSYYK 249 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~----~~~~~~~-~d~~~ 249 (347)
.-+|.|.|.+. + ..++++..|=|++| ..-++..|...++|+|+|+-+-... .+.. ....... .|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 34566766553 4 56777778888887 3556777889999999998665432 2110 0000001 12222
Q ss_pred h--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 019023 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (347)
Q Consensus 250 ~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (347)
. .+--....+. ++..+...+++|+..+.. .||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 1 1222235554 566666666677666656 79999998653
No 58
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=85.95 E-value=5.7 Score=41.23 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=65.6
Q ss_pred cccccch-hHHHHHHHHHHHhCC-CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~-~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
.|+-.++ +++|+|+|+ .+ .-++++.++.+.+. ..++++..++..++|+++++...+++.+..........|
T Consensus 419 ~gIaE~~~v~~a~GlA~----~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~ed 491 (675)
T 1itz_A 419 FGVREHGMGAICNGIAL----HSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEH 491 (675)
T ss_dssp CCSCHHHHHHHHHHHHT----TCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred ecccHHHHHHHHHHHHh----cCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHH
Confidence 3443333 345666653 33 23567777655543 356788899999999999997777664311111111223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
.+-.. .+|++.| .=-|+.++..+++.|++. .++|++|-.
T Consensus 492 la~lr-~iP~l~V~~Pad~~e~~~~l~~a~~~--~~~Pv~i~~ 531 (675)
T 1itz_A 492 LVSFR-AMPNILMLRPADGNETAGAYKVAVLN--RKRPSILAL 531 (675)
T ss_dssp HHHHH-SSSSCEEECCCSHHHHHHHHHHHHHC--TTSCEEEEE
T ss_pred HHHhc-cCCCeEEEECCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 33221 3555443 335888999999998872 289999854
No 59
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=85.93 E-value=3.4 Score=41.54 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-ccccc---c-cccCC-chHhh
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE---W-RAAKS-PSYYK 249 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~---~-~~~~~-~d~~~ 249 (347)
.-+|.|.|.+. + -.++++..|=|++| ..-++..|...++|+|+|+-+-... .+... . ..... .|...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 34566666543 4 55666777888887 3456777888999999998665432 21110 0 00001 12222
Q ss_pred h--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 250 ~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
. .+--....+. ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 1 1222234554 344455556666655555 7999999864
No 60
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=85.80 E-value=2.1 Score=43.44 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhh-h-cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK-R-GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~-~-g~g 253 (347)
-+|.|.|.+ .++-.++++..|=|++|. .-++..|..-++|+|+|+-+.... ++.. .-+ ..|... . .+-
T Consensus 57 ~~A~GyAr~---tgk~~v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~-~~Q--~~d~~~~~~~~t 127 (590)
T 1v5e_A 57 MAAVMQSKF---GGNLGVTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMD-AFQ--ELNQNPMYDHIA 127 (590)
T ss_dssp HHHHHHHHT---TCCCCEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTT-CTT--CCCCHHHHHTTC
T ss_pred HHHHHHHHH---HCCCEEEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCC-ccc--ccCHHHHHHhhc
Confidence 345555543 344567777778888873 456777888899999998665432 2111 011 112211 1 122
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-C-CCEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-N-GPMILEMD 289 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~-gP~lIe~~ 289 (347)
-....+. ++.++.+.+++|+..+.. + ||+.| +-
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP 162 (590)
T 1v5e_A 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VP 162 (590)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EE
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ec
Confidence 2234454 677788888888877766 4 89999 54
No 61
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=85.62 E-value=2 Score=43.78 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhh--hcCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~--~g~g 253 (347)
-+|.|.|.+. ++-.+++|..|=|++|- .-++..|..-++|+|+|.-+-... ++.. .-+ ..|... +.+-
T Consensus 83 ~aA~GyAr~t---gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~g~~-~~Q--~~d~~~~~~~~t 153 (604)
T 2x7j_A 83 FFALGLAKAK---QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELREVG-APQ--AINQHFLFGNFV 153 (604)
T ss_dssp HHHHHHHHHH---TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGSSSC-CTT--CCCCTTTTGGGS
T ss_pred HHHHHHHHhh---CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHhCCC-CCC--cCcHHHHhhhhe
Confidence 3466666543 44567778888888883 456788888899999998654432 1110 001 111111 0111
Q ss_pred cceEEec-CCCH----HHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 019023 254 VPGLKVD-GMDA----LAVKQACKFAKEHALK--NGPMILEMDTY 291 (347)
Q Consensus 254 ipg~~VD-G~D~----~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (347)
-....|. ..+. ..+.+.+++|+..+.. .||+.|++-..
T Consensus 154 k~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 154 KFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp SCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 1123443 2220 0166666777666654 69999998754
No 62
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=85.12 E-value=3 Score=42.75 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHH-HHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhhcCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~g~g 253 (347)
+.+|+|+|++ + -++++.++++... ..+| .++.++..++|+++++.+.++ +-..++. ....|+.-. -.
T Consensus 374 ~~~a~G~A~~----G-~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH--~~~~d~~~~-~~ 442 (621)
T 2o1s_A 374 VTFAAGLAIG----G-YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTH--QGAFDLSYL-RC 442 (621)
T ss_dssp HHHHHHHHHT----T-CEEEEEEETTGGG---GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGG--CBCSHHHHT-TT
T ss_pred HHHHHHHHHC----C-CEEEEEehHhHHH---HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCcc--CchHHHHHH-hc
Confidence 4567777764 2 4678888888653 2344 467788999999999977665 2111111 112233221 12
Q ss_pred cceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 254 ipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+|++.| .=.|+.+++.+++.|++. .++|++|-.
T Consensus 443 iP~l~v~~P~d~~e~~~~l~~a~~~--~~~Pv~i~~ 476 (621)
T 2o1s_A 443 IPEMVIMTPSDENECRQMLYTGYHY--NDGPSAVRY 476 (621)
T ss_dssp STTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 444333 445889999999998873 278998855
No 63
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=84.69 E-value=3.6 Score=41.91 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCCc
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~gi 254 (347)
-+|.|.|.+. .++-.++++..|=|++|. .-++..|..-+.|+|+|+-+.......... ....|.... .+--
T Consensus 79 ~~A~GyAr~t--gg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~~~~~--~Q~~d~~~~~~~~tk 151 (616)
T 2pan_A 79 HMAEGYTRAT--AGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARLHKED--FQAVDIEAIAKPVSK 151 (616)
T ss_dssp HHHHHHHHHS--TTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGTTTTC--TTCCCHHHHHGGGSS
T ss_pred HHHHHHHHhc--CCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCccc--ccccCHHHHHHHHHH
Confidence 3456666442 133456667778888873 456778888899999998665432111110 111222221 1111
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
....+. ++..+...+++|+..+.. .||+.|++-.
T Consensus 152 ~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 152 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 223443 566788888888877765 5899998854
No 64
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=84.35 E-value=2.3 Score=42.81 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. +...++++..|=|++| ..-++..|..-++|+|+|.-+-... ++.. .......|.... .+-
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~-~~~~Q~~dq~~~~~~~t 133 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQ-QGDYEEMDQMNVARPHC 133 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTT-CCCTTCCCHHHHSGGGS
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCC-CCcccccCHHHHHHhhh
Confidence 3456666543 4445777777888887 4567888889999999998664432 1100 000111122211 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-....+. ++..+...+.+|+..+.. .||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 134 KASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred heeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 1123443 566777777777776655 6999998753
No 65
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=84.25 E-value=2.3 Score=42.75 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. +.-.+++|..|=|++| ..-++..|..-++|+|+|+-+-... .+.. .......|.... .+-
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~-~~~~Q~~dq~~~~~~~t 131 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQ-QGDYEELDQMNAAKPYA 131 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTT-SCCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC-CCccccccHHHHHHHhh
Confidence 3466666543 4445777777888887 4566778888999999998665432 1100 000111122111 122
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-....|. ++..+...+++|+..+.. .||+.|++-.
T Consensus 132 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 132 KAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred heeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 2224454 566677777777776655 6999998753
No 66
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=83.85 E-value=8.9 Score=39.69 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=65.9
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|+|+|+. +.-++++..+...+. ..++++.+++..++|+++++...+++.+..........|.
T Consensus 407 ~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edl 479 (669)
T 2r8o_A 407 YGVREFGMTAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (669)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cchhHHHHHHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHH
Confidence 3444443 3466677654 223566666655443 2467788899999999999988777643211111112233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+... .+|++.| .=-|..++..+++.|++. .++|++|-.
T Consensus 480 a~lr-~iP~l~V~~Pad~~E~~~~l~~a~~~--~~~Pv~i~~ 518 (669)
T 2r8o_A 480 ASLR-VTPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 518 (669)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEEC
T ss_pred HHhc-CCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEEe
Confidence 3221 2555433 334888999999999872 279999843
No 67
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=83.46 E-value=2.6 Score=39.93 Aligned_cols=98 Identities=19% Similarity=0.132 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHHHHH---------HcCCCeEEEEecCCc-ccccccccccCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNIAA---------LWDLPAILVCENNHY-GMGTAEWRAAKS 244 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn~Aa---------~~~LPvi~vv~NN~~-~~~~~~~~~~~~ 244 (347)
+.+|+|+|++ + -++++. .++|.. + ..++.+.+.+ +.++|+++++.+ ++ +-..+...+ .
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~--~ 143 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ--C 143 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC--C
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh--H
Confidence 4567777764 2 345554 488887 2 3566665443 379999999885 53 211111111 1
Q ss_pred chHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 245 ~d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
.+ ..--.+|++.| .=.|+.+.+.+++.|++. ++|++|-..
T Consensus 144 ~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~~~ 184 (341)
T 2ozl_B 144 FA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIRD---NNPVVVLEN 184 (341)
T ss_dssp CH--HHHHTSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEEC
T ss_pred HH--HHhccCCCCEEEEeCCHHHHHHHHHHHHhc---CCCEEEEEC
Confidence 12 11112444333 445899999999998864 899988653
No 68
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=83.30 E-value=6.6 Score=40.51 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=65.9
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +++|+|+|+. +.-++++..+.-.+. -.++++.+++..++|+++++.+.+++.+..........|+
T Consensus 402 ~gIaE~~~~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edl 474 (651)
T 2e6k_A 402 FGVREHAMGAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHL 474 (651)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cCcCHHHHHHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHH
Confidence 3444333 3567777764 223566666633322 2467788999999999999988887653211111122233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+... .+|++.| .=-|+.++..+++.|++. .++|++|-.
T Consensus 475 a~lr-~iP~l~V~~Pad~~E~~~~l~~A~~~--~~~Pv~i~~ 513 (651)
T 2e6k_A 475 MSLR-AMPNLFVIRPADAYETFYAWLVALRR--KEGPTALVL 513 (651)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--CSSCEEEEC
T ss_pred HHhc-CCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 3221 2444433 344888999999999873 278998865
No 69
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=82.64 E-value=6.8 Score=40.60 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|+|+|+. +.-++++.++.+-.. ..++++.+++..++|++|+....+++.+..........|.
T Consensus 408 ~GIaE~~~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~ 480 (663)
T 3kom_A 408 YGVREFGMAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHV 480 (663)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred cCccHHHHHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHH
Confidence 4555443 4667788764 123567776665542 3467788899999999999877776543211111112233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
+-. -.+|+++| -=-|+.++..+++.|++. .++|++|-
T Consensus 481 a~l-r~iPnl~V~~Pad~~e~~~~l~~A~~~--~~~Pv~ir 518 (663)
T 3kom_A 481 PSL-RLIPNLSVWRPADTIETMIAWKEAVKS--KDTPSVMV 518 (663)
T ss_dssp HHH-HTSTTCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHH-hcCCCcEEEeeCCHHHHHHHHHHHHHh--CCCCEEEE
Confidence 221 13555443 334788899999998861 28999884
No 70
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=82.46 E-value=3.6 Score=40.98 Aligned_cols=107 Identities=19% Similarity=0.062 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhh--cCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~--g~g 253 (347)
.-+|.|.|.+. +...++++..|=|+.|. .-++..|...++|+|+|+-+-..........+. ..|.... .+-
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhh
Confidence 34566776553 44556777778888873 456777889999999998654431110000011 0122221 111
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEEe
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDTY 291 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t~ 291 (347)
-....+. ++.++.+.+.+|+..+.. .||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 1123343 555667777777776655 68999998653
No 71
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=82.11 E-value=6.7 Score=41.04 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=65.4
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|+|+|+. +.-++++.++. .|.+ ..+..+.+++..++|++|+....+++.+.......+..|.
T Consensus 453 ~GIaE~~mv~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~ 525 (711)
T 3uk1_A 453 YGVREFGMSAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHV 525 (711)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHH
T ss_pred eCccHHHHHHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCccCChhHH
Confidence 4555544 4667888863 12355666653 3333 3457788889999999999987776543211111122233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
+-. -.+|+++| .=-|..++..+++.|++ .++|++|-
T Consensus 526 a~l-r~iPnl~V~~Pad~~E~~~~l~~Ai~---~~~Pv~ir 562 (711)
T 3uk1_A 526 ASL-RLIPNLDVWRPADTVETAVAWTYAVA---HQHPSCLI 562 (711)
T ss_dssp HHH-HTSTTCEEECCSSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred HHH-hcCCCCEEEecCCHHHHHHHHHHHHh---cCCCEEEE
Confidence 221 13555544 33478889999999886 48999884
No 72
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=81.90 E-value=4 Score=41.11 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccc--cccCCch-Hhh-h-
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEW--RAAKSPS-YYK-R- 250 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~--~~~~~~d-~~~-~- 250 (347)
-+|.|.|.+. ++-.+++|..|=|++| ..-++..|..-++|+|+|+-+-... .+.... -+....| ... .
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 3466766553 4445677777888887 3556778888999999998664321 211100 0000111 111 1
Q ss_pred cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
.+--....+. ++.++...+++|+..+.. .||+.|++-.
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 185 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPR 185 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECCh
Confidence 1222234453 444555555666555545 7999999973
No 73
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=81.82 E-value=3.6 Score=39.46 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhCCCCceEEEE-eCCcccccchHHHHHHH-HHHc--------CCCeEEEEecCCcccccccccccCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNI-AALW--------DLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~-~GDGa~~~G~~~Ealn~-Aa~~--------~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
+.+|.|+|++ + -++++.+ ++|... ..++.+.. ++.. ++|+++++.+-+..-+.+. ....
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~---hs~~ 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLY---HSNS 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcc---cccc
Confidence 4567777764 2 3455554 888762 34555544 4544 9999998876553211111 1111
Q ss_pred hHhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 246 d~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
+. ..--.+|++.| .=.|+.+.+.+++.|++ .++|++|-.
T Consensus 180 ~~-a~l~~iPnl~V~~Psd~~e~~~ll~~A~~---~~~Pv~i~~ 219 (369)
T 1ik6_A 180 PE-AIFVHTPGLVVVMPSTPYNAKGLLKAAIR---GDDPVVFLE 219 (369)
T ss_dssp HH-HHHHTCTTCEEECCCSHHHHHHHHHHHHH---SSSCEEEEE
T ss_pred HH-HHHcCCCCcEEEecCCHHHHHHHHHHHHh---CCCCEEEEE
Confidence 21 11112444333 44589999999999886 389998843
No 74
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=81.50 E-value=7.4 Score=40.10 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=66.8
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
..|+-.++ +.+|+|+|+. +.-++++.++.+=+ + ..++.+.+++..++||+|+....+++.+.......+..|
T Consensus 386 d~GIaE~~~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed 458 (632)
T 3l84_A 386 HFGIREHAMAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQ 458 (632)
T ss_dssp ECCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSH
T ss_pred EeCccHHHHHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhH
Confidence 34555443 3567787765 12356666665433 2 356778888999999999988777764321111112223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
++-.. .+|+++| -=-|+.++..+++.|++ .++|++|-.
T Consensus 459 ~a~lr-~iP~l~V~~P~d~~e~~~~l~~A~~---~~~Pv~ir~ 497 (632)
T 3l84_A 459 LSTFR-AMPNFLTFRPADGVENVKAWQIALN---ADIPSAFVL 497 (632)
T ss_dssp HHHHH-HSSSCEEECCSSHHHHHHHHHHHHH---CSSCEEEEC
T ss_pred HHHHh-cCCCCEEEecCCHHHHHHHHHHHHh---CCCCEEEEE
Confidence 32211 2555433 23478899999999986 489998853
No 75
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=81.23 E-value=3.6 Score=41.59 Aligned_cols=105 Identities=23% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|..-+.|+|+|.-+-... +++- .....|.... .+-
T Consensus 63 ~aAdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~~g~~---~~Qe~d~~~~~~~~t 133 (578)
T 3lq1_A 63 FFALGLAKAS---KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHELRNVG---APQAMDQLHLYGSHV 133 (578)
T ss_dssp HHHHHHHHHH---CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGGTTSS---CTTCCCCTTTTGGGS
T ss_pred HHHHHHHHhh---CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHhhcCC---CCCCcCHhhHHhhhe
Confidence 3466776553 45567788889998883 456888889999999998543321 1110 0001111110 010
Q ss_pred cceEEe-cCCCHHH----HHHHHHHHHHHhcc--CCCEEEEEEE
Q 019023 254 VPGLKV-DGMDALA----VKQACKFAKEHALK--NGPMILEMDT 290 (347)
Q Consensus 254 ipg~~V-DG~D~~a----v~~a~~~A~~~ar~--~gP~lIe~~t 290 (347)
-....| +..+..+ +..++++|+..+.. .||+.|++-.
T Consensus 134 k~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 134 KDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp SEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred eeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 111333 2334322 33456666665554 7999999864
No 76
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=81.16 E-value=7.1 Score=40.50 Aligned_cols=109 Identities=19% Similarity=0.179 Sum_probs=64.7
Q ss_pred cccccchh-HHHHHHHHHHHhCCCCc-eEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 169 HGIVGAQI-PLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 169 ~g~lG~~~-p~a~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
.|+-.+++ ++|+|+|+. +.-+ +++..+.+-+. ..++++.+++..++|++|++...+++.+..........|
T Consensus 414 ~gIaE~~~vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~ed 486 (680)
T 1gpu_A 414 YGIREHAMGAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIET 486 (680)
T ss_dssp CCSCHHHHHHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSH
T ss_pred CCccHHHHHHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHH
Confidence 34444433 467777764 2125 56666643332 246778889999999999987777764311111111223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
.+-.. .+|+++| -=-|+.++..+++.|++. .++|++|-
T Consensus 487 la~lr-~iP~l~V~~Pad~~e~~~~l~~A~~~--~~~Pv~i~ 525 (680)
T 1gpu_A 487 LAHFR-SLPNIQVWRPADGNEVSAAYKNSLES--KHTPSIIA 525 (680)
T ss_dssp HHHHH-TSSSCEEECCCSHHHHHHHHHHHHHC--SSCCEEEE
T ss_pred HHHhc-CCCCCEEEecCCHHHHHHHHHHHHHh--CCCcEEEE
Confidence 33211 3555443 334788999999999872 28999984
No 77
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=79.77 E-value=3.5 Score=42.39 Aligned_cols=100 Identities=19% Similarity=0.302 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHH-HHHHHHHcCCCeEEEEecCCc-ccccccccccCCchHhhhcCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvi~vv~NN~~-~~~~~~~~~~~~~d~~~~g~g 253 (347)
+.+|+|+|++ + -++++.++.+.. + ..+| .++.++..++|+++++.+.++ +-..++. ....|..-. -.
T Consensus 377 ~~~a~G~A~~----G-~rp~~~~~~~F~--~-~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH--~~~~d~a~~-r~ 445 (629)
T 2o1x_A 377 VTTAAGMALQ----G-MRPVVAIYSTFL--Q-RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATH--NGVFDLSFL-RS 445 (629)
T ss_dssp HHHHHHHHHT----T-CEEEEEEEHHHH--G-GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTT--CBCSHHHHT-TT
T ss_pred HHHHHHHHHc----C-CEEEEEecHHHH--H-HHHHHHHHHHhhcCCCEEEEEECCccCCCCCccc--CccHHHHHH-Hc
Confidence 4567777764 2 466777777654 2 2344 467788999999999976654 2111111 112232221 12
Q ss_pred cceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 254 VPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 254 ipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
+|++.| .=.|+.+++.+++.|++. ++|++|-..
T Consensus 446 iP~l~v~~P~d~~e~~~~~~~a~~~---~~Pv~i~~~ 479 (629)
T 2o1x_A 446 IPGVRIGLPKDAAELRGMLKYAQTH---DGPFAIRYP 479 (629)
T ss_dssp STTCEEECCSSHHHHHHHHHHHHHS---SSCEEEECC
T ss_pred cCCcEEEecCCHHHHHHHHHHHHhC---CCCEEEEec
Confidence 444433 445889999999999874 899988653
No 78
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=78.41 E-value=8.3 Score=35.94 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHHH-HHH--------cCCCeEEEEecCCcccccccccccCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNI-AAL--------WDLPAILVCENNHYGMGTAEWRAAKSP 245 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn~-Aa~--------~~LPvi~vv~NN~~~~~~~~~~~~~~~ 245 (347)
+.+|+|+|++- -++++. .+++.. + ..++.+.. ++. .++|+++++. .+++..... .+...
T Consensus 64 v~~a~G~A~~G-----~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~--~hs~~ 132 (324)
T 1umd_B 64 VGAALGMAAHG-----LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGH--HHSQS 132 (324)
T ss_dssp HHHHHHHHHHT-----CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGG--GSSCC
T ss_pred HHHHHHHHHCC-----CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCC--ccchh
Confidence 56678887752 245554 488886 2 35665643 343 6899998876 344211111 11111
Q ss_pred hHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 246 SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 246 d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
+.+-. -.+|++ .+.=.|+.+.+..++.|++ .++|++|-
T Consensus 133 ~~a~~-~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~ 171 (324)
T 1umd_B 133 PEAHF-VHTAGLKVVAVSTPYDAKGLLKAAIR---DEDPVVFL 171 (324)
T ss_dssp CHHHH-HTSTTCEEEECCSHHHHHHHHHHHHH---CSSCEEEE
T ss_pred HHHHH-hcCCCCEEEEeCCHHHHHHHHHHHHh---cCCCEEEE
Confidence 22111 124443 2344589999999999986 38999884
No 79
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=77.65 E-value=4.1 Score=38.33 Aligned_cols=100 Identities=14% Similarity=0.028 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHH-HHHH--------cCCCeEEEEecCCcccccccccccCC
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALN-IAAL--------WDLPAILVCENNHYGMGTAEWRAAKS 244 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn-~Aa~--------~~LPvi~vv~NN~~~~~~~~~~~~~~ 244 (347)
.+.+|+|+|++- -++++. .++++. + ..++.+. .++. +++|+++++.+-+...+ + ...+.
T Consensus 64 ~~~~a~G~A~~G-----~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G-~--th~s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAYG-----LRPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYG-G--QTHSQ 132 (338)
T ss_dssp HHHHHHHHHHHT-----CEEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSC-C--SSSSC
T ss_pred HHHHHHHHHhCC-----CEEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCC-c--ccccc
Confidence 356678887752 244554 488886 2 3566554 3443 35999998865442111 1 11112
Q ss_pred chHhhhcCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 019023 245 PSYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (347)
Q Consensus 245 ~d~~~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (347)
.|..-.. .+|++. +.=.|+.+.+..++.|++. ++|++|-..
T Consensus 133 ~d~~~l~-~iP~l~V~~Psd~~e~~~~l~~A~~~---~~Pv~i~~p 174 (338)
T 1qs0_B 133 SPEAMFT-QVCGLRTVMPSNPYDAKGLLIASIEC---DDPVIFLEP 174 (338)
T ss_dssp CCHHHHT-TSTTCEEECCCSHHHHHHHHHHHHHS---SSCEEEEEE
T ss_pred cHHHHHh-cCCCCEEEeeCCHHHHHHHHHHHHhc---CCcEEEEEc
Confidence 2332211 233332 3445899999999998864 899998543
No 80
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=77.49 E-value=21 Score=36.95 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchHhhhcCCcce
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPG 256 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~~~~g~gipg 256 (347)
++|+|+|+. +.-++++.++..-+. ..++++..++..++|+++++...+++.+..........+.+... .+|+
T Consensus 416 ~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr-~iP~ 487 (673)
T 1r9j_A 416 AILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALR-AMPN 487 (673)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHH-HSTT
T ss_pred HHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHc-CCCC
Confidence 466776654 223566666644332 34677888999999999998777765432111111122332221 2444
Q ss_pred EEe-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 257 LKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 257 ~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
++| .=-|+.++..+++.|++. .++|++|-.
T Consensus 488 l~V~~Pad~~e~~~~l~~a~~~--~~~Pv~i~~ 518 (673)
T 1r9j_A 488 LQVIRPSDQTETSGAWAVALSS--IHTPTVLCL 518 (673)
T ss_dssp CEEECCSSHHHHHHHHHHHHHC--TTCCEEEEC
T ss_pred CEEEeCCCHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 433 334788999999998872 289999853
No 81
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=75.93 E-value=5 Score=37.54 Aligned_cols=97 Identities=18% Similarity=0.057 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHHH-HHH--------cCCCeEEEEecCCcc-cccccccccC
Q 019023 175 QIPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALNI-AAL--------WDLPAILVCENNHYG-MGTAEWRAAK 243 (347)
Q Consensus 175 ~~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn~-Aa~--------~~LPvi~vv~NN~~~-~~~~~~~~~~ 243 (347)
.+.+|+|+|++ + -+++++ .++++.. ..+|.+.. ++. .++|+++++. .+++ -+.+. ...
T Consensus 62 ~v~~a~G~A~~----G-~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~ 130 (324)
T 1w85_B 62 IGGLAIGLALQ----G-FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--HSD 130 (324)
T ss_dssp HHHHHHHHHHT----T-CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--SSC
T ss_pred HHHHHHHHHhC----C-CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--ccc
Confidence 35667777764 2 244454 4888862 34665643 443 7999998875 3432 11111 111
Q ss_pred CchHhhhcCCcceEE-ecCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 244 SPSYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 244 ~~d~~~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
.+.+ .--.+|++. +.=.|+.+.+..++.|++ .++|++|-
T Consensus 131 -~~~a-~~~~iP~l~V~~Psd~~e~~~~l~~a~~---~~~Pv~i~ 170 (324)
T 1w85_B 131 -SLEG-LVAQQPGLKVVIPSTPYDAKGLLISAIR---DNDPVIFL 170 (324)
T ss_dssp -CCHH-HHTTSTTCEEECCSSHHHHHHHHHHHHH---SSSCEEEE
T ss_pred -cHHH-HHccCCCCEEEeeCCHHHHHHHHHHHHH---cCCCEEEE
Confidence 1221 112355533 344589999999999886 38999885
No 82
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=75.64 E-value=11 Score=41.97 Aligned_cols=110 Identities=14% Similarity=0.072 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch-HhhhcCCc
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS-YYKRGDYV 254 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d-~~~~g~gi 254 (347)
+.+++|++++ +.++++.+--.+++ ...|.|..++-..+|+++++.+.... ++.........| ++.+..|+
T Consensus 67 ~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~-~~glsi~~~hsd~~~ar~~G~ 137 (1231)
T 2c42_A 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIA-AHALSIFGDHQDIYAARQTGF 137 (1231)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCC-SSSBCCSCCSHHHHTTTTSSC
T ss_pred HHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCcc-CCCCcCCCchhhHHHHhcCCc
Confidence 4567777765 34555555444444 25688865555789988888776531 111111111112 23344566
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (347)
+. +.-.++.+.+.-+..|...+.+ .-|+++-...+|. +|.
T Consensus 138 ~v--l~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~-sh~ 178 (1231)
T 2c42_A 138 AM--LASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHE 178 (1231)
T ss_dssp EE--EECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTC
T ss_pred EE--EECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-ccc
Confidence 33 4455888888888888777767 9999988888765 453
No 83
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=75.20 E-value=18 Score=37.61 Aligned_cols=110 Identities=19% Similarity=0.113 Sum_probs=63.2
Q ss_pred Ccccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCch
Q 019023 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (347)
Q Consensus 168 ~~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d 246 (347)
..|+-.++ +.+|+|+|+. +.-++++..+.--+. ....++.+++..++||+|++...+++.+.......+..+
T Consensus 431 d~GIaE~~mv~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied 503 (690)
T 3m49_A 431 WYGVREFAMGAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQ 503 (690)
T ss_dssp ECCSCHHHHHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSH
T ss_pred EcCchHHHHHHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHH
Confidence 34555443 3567788765 112455554422221 123457788999999999998877754321111112223
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (347)
.+-.. .+|+++| -=-|..++..+++.|++. .++|++|-
T Consensus 504 ~a~lr-~iPnl~V~~Pad~~E~~~~l~~Ai~~--~~~Pv~ir 542 (690)
T 3m49_A 504 LAALR-AMPNVSVIRPADGNESVAAWRLALES--TNKPTALV 542 (690)
T ss_dssp HHHHH-TSTTCEEECCSSHHHHHHHHHHHHHC--SSSCEEEE
T ss_pred HHHHh-cCCCCEEEeeCCHHHHHHHHHHHHHc--CCCCEEEE
Confidence 33211 3555443 234788999999999872 27899884
No 84
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=74.40 E-value=9.3 Score=38.27 Aligned_cols=106 Identities=8% Similarity=0.010 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCccc-cc--ccc--ccc-CCchHhh
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GT--AEW--RAA-KSPSYYK 249 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~-~~--~~~--~~~-~~~d~~~ 249 (347)
.-+|.|.|.+. + -.++++..|=|++| ..-++..|..-++|+|+|+-+-.... .. ... ... ...++..
T Consensus 55 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~ 127 (563)
T 2vk8_A 55 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHR 127 (563)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHH
Confidence 34566776654 4 44777778888887 34567778889999999986644321 00 000 000 0012221
Q ss_pred h--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 250 ~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
. .+--....+. ++..+.+.+.+|+..+.. .||+.|++-.
T Consensus 128 ~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 128 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 1 1222234454 444455555555554444 7999999864
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=71.59 E-value=8.7 Score=38.52 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-cccccccccCCchHhhh--cCC
Q 019023 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~~~~~~~~d~~~~--g~g 253 (347)
-+|.|.|.+. ++-.++++..|=|++|- .-++..|..-+.|+|+|.-+-... +++. . ....|.... .+-
T Consensus 60 ~~AdGyAr~t---G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~~-~--~Q~~d~~~~~~~~t 130 (556)
T 3hww_A 60 HLALGLAKVS---KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDCG-A--NQAIRQPGMFASHP 130 (556)
T ss_dssp HHHHHHHHHH---CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSSS-C--TTCCCCTTTTTTCS
T ss_pred HHHHHHHHhh---CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhccC-C--CccccHHHHHhhhe
Confidence 3456666543 45567888889999883 456888889999999998554332 1111 0 011121110 011
Q ss_pred cceEEec-CC---CHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 019023 254 VPGLKVD-GM---DALAVKQACKFAKEHALKNGPMILEMDT 290 (347)
Q Consensus 254 ipg~~VD-G~---D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (347)
-....|. .. ....+.+++++|+.. ...||+.|++-.
T Consensus 131 k~~~~v~~~~~~~~~~~i~~~i~~A~~~-~r~GPV~i~iP~ 170 (556)
T 3hww_A 131 THSISLPRPTQDIPARWLVSTIDHALGT-LHAGGVHINCPF 170 (556)
T ss_dssp SEEEECCCCCTTSCHHHHHHHHHHHHHS-CCSSCEEEEEEC
T ss_pred eEEEecCCCcccccHHHHHHHHHHHHhc-CCCCCEEEeCCc
Confidence 1112332 11 234577888888731 127999999864
No 86
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=69.78 E-value=17 Score=36.47 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcc-ccccc----cccc-CCchHhh
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE----WRAA-KSPSYYK 249 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~-~~~~~----~~~~-~~~d~~~ 249 (347)
.-+|.|.|.+. + -.++++..|=|++| ..-++..|..-++|+|+|+-+.... .+... .... ...+...
T Consensus 76 ~~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
T 2vbf_A 76 SYMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMK 148 (570)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHH
Confidence 34566766553 4 45677777888877 3456778888999999998665532 11100 0000 0011111
Q ss_pred h--cCCcceEEecCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 019023 250 R--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (347)
Q Consensus 250 ~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (347)
. .+--....+. + ..+...+++|+..+.. .||+.|++-.
T Consensus 149 ~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~ 189 (570)
T 2vbf_A 149 MHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPV 189 (570)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEH
T ss_pred HhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcch
Confidence 1 1222234454 2 3444455555544444 7999999864
No 87
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=67.76 E-value=14 Score=34.78 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhCCCCceEEE-EeCCcccccchHHHHHH-HHHHcC--------C-CeEEEEecCCcccccccccccCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFA-LYGDGAANQGQLFEALN-IAALWD--------L-PAILVCENNHYGMGTAEWRAAKS 244 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~-~~GDGa~~~G~~~Ealn-~Aa~~~--------L-Pvi~vv~NN~~~~~~~~~~~~~~ 244 (347)
+.+|+|+|++ + -++++. .++++.. ..++.+. .++.++ + |+++++..-+.+.+ +. ....
T Consensus 80 v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G-~t--h~~~ 148 (342)
T 2bfd_B 80 VGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHG-AL--YHSQ 148 (342)
T ss_dssp HHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSC-GG--GSSC
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCC-cc--hhhH
Confidence 5667777765 2 345554 4888854 3456554 455433 4 99998765332211 11 1111
Q ss_pred chHhhhcCCcceE-EecCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 019023 245 PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (347)
Q Consensus 245 ~d~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (347)
.|..-.. .+|++ .+.=.|+.+.+..++.|+++ ++|++|-.
T Consensus 149 ~d~~~l~-~iP~l~V~~Psd~~e~~~~l~~a~~~---~~Pv~i~~ 189 (342)
T 2bfd_B 149 SPEAFFA-HCPGIKVVIPRSPFQAKGLLLSCIED---KNPCIFFE 189 (342)
T ss_dssp CCHHHHH-TSTTCEEECCSSHHHHHHHHHHHHHS---SSCEEEEE
T ss_pred hHHHHHh-cCCCcEEEeeCCHHHHHHHHHHHHhc---CCcEEEEe
Confidence 2322211 24443 23445899999999998864 89999844
No 88
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=64.89 E-value=22 Score=35.38 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
.-+|.|.|.+. + -.++++..|=|++|. .-++..|...++|+|+|+-+..
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p 104 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPG 104 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECC
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCC
Confidence 44567777664 3 347788888888773 4568888899999999986644
No 89
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=63.79 E-value=40 Score=35.11 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=62.2
Q ss_pred cccccch-hHHHHHHHHHHHhCCCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCCcccccccccccCCchH
Q 019023 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (347)
Q Consensus 169 ~g~lG~~-~p~a~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~~~~~~~~~~~~d~ 247 (347)
.|+-.++ +.+|.|+|+. +.-++++..+.. |.. ...-++.+++..++||+|+....+++.+.......+..|.
T Consensus 437 ~GIaE~~mv~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~ied~ 509 (700)
T 3rim_A 437 FGVREHAMGAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHL 509 (700)
T ss_dssp CCSCHHHHHHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHH
T ss_pred cCccHHHHHHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCChhHH
Confidence 3444443 3566787765 122445543322 111 1234578899999999999987777643211111122233
Q ss_pred hhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhccC--CCEEEEE
Q 019023 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKN--GPMILEM 288 (347)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~--gP~lIe~ 288 (347)
+-.. .+|+++| -=-|..++..+++.|++. .+ +|++|-.
T Consensus 510 a~lr-~iPnl~V~~Pad~~e~~~~l~~Ai~~--~~~~~Pv~ir~ 550 (700)
T 3rim_A 510 SALR-AIPRLSVVRPADANETAYAWRTILAR--RNGSGPVGLIL 550 (700)
T ss_dssp HHHH-TSTTCEEECCSSHHHHHHHHHHHHTT--TTCSSCEEEEC
T ss_pred HHHh-cCCCCEEEeCCCHHHHHHHHHHHHHc--cCCCCCEEEEe
Confidence 3221 3555444 223788899999988863 25 7999853
No 90
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=45.59 E-value=90 Score=27.69 Aligned_cols=142 Identities=11% Similarity=0.068 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhCCC--CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe-cCCcccccccccccCCchHhhhcCC
Q 019023 177 PLGCGLAFAQKYSKD--ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNHYGMGTAEWRAAKSPSYYKRGDY 253 (347)
Q Consensus 177 p~a~G~A~A~k~~~~--~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~-NN~~~~~~~~~~~~~~~d~~~~g~g 253 (347)
-..+|-.+|.++... +--+|+-.--|++. =+..+|...++|++++-- ...++...... . .+ --|
T Consensus 71 ~~~l~~~la~~i~~~~~~~D~Ivg~~~gGi~-----~a~~lA~~L~~p~~~vrk~~k~~G~~~~i~----g-~~---~~G 137 (234)
T 3m3h_A 71 RQTIAAGLEELIKEHFPTVEVIAGTATAGIA-----HAAWVSDRMDLPMCYVRSKAKGHGKGNQIE----G-KA---EKG 137 (234)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEC---CHH-----HHHHHHHHHTCCEEEEC---------CCEE----S-CC---CTT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccchHH-----HHHHHHHHcCCCEEEEEEeeccCCcceEEe----c-cc---CCC
Confidence 345677777665432 22233333233333 245677788999876532 22233211110 0 00 013
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCh------HHHHHHH
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDP------IERIRKL 327 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DP------i~~~~~~ 327 (347)
-..+-|| |+..-=..+..+++.+++.|+.++.+.+.=. +....-.+...+..=| +..+-++
T Consensus 138 k~VLIVD--DvitTG~Tl~~a~~~L~~~Ga~vv~v~~l~~-----------~~~~~~~e~l~~~gi~v~sL~~~~dl~~~ 204 (234)
T 3m3h_A 138 QKVVVVE--DLISTGGSAITCVEALREAGCEVLGIVSIFT-----------YELEAGKEKLEAANVASYSLSDYSALTEV 204 (234)
T ss_dssp CEEEEEE--EEESSSHHHHHHHHHHHHTTCEEEEEEEEEE-----------CCCHHHHHHHHHTTCCEEESSCHHHHHHH
T ss_pred CEEEEEe--cccchhHHHHHHHHHHHHCCCEEEEEEEEEE-----------CcCchHHHHHHhcCCCEEEEeeHHHHHHH
Confidence 3346677 5544444555555555566777776654211 1111112222222222 4567788
Q ss_pred HHHcCCCCHHHHHHHHh
Q 019023 328 ILAHDLATEKELKSVSD 344 (347)
Q Consensus 328 L~~~g~~t~~e~~~i~~ 344 (347)
+.+.|.+++++++.+++
T Consensus 205 ~~~~~~i~~~~~~~~~~ 221 (234)
T 3m3h_A 205 AAEKGIIGQAETKKLQE 221 (234)
T ss_dssp HHHTTSSCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 88999999999988875
No 91
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=38.57 E-value=22 Score=29.99 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 321 IERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 321 i~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
+.-+.+.|+++|++|++||++-.+++
T Consensus 113 L~ALe~lLvekGvit~~EL~ar~aEv 138 (157)
T 2zzd_B 113 LLTAARILVDKQFVTLTELHNKIVEM 138 (157)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35689999999999999998776654
No 92
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=38.29 E-value=1.6e+02 Score=26.29 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhCCC--CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEec-CCcccccccccccCCchHhhhcC
Q 019023 176 IPLGCGLAFAQKYSKD--ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN-NHYGMGTAEWRAAKSPSYYKRGD 252 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~--~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~N-N~~~~~~~~~~~~~~~d~~~~g~ 252 (347)
+-..+|-.+|.++... +--+|+-.=-|++ .=+..+|...++|++++--. ..++...... . .+ --
T Consensus 82 ~~~~l~~~la~~i~~~~~~~DvIvg~~~gGi-----~~A~~lA~~L~~p~~~vrk~~k~~G~~~~ie----g-~~---~~ 148 (243)
T 3dez_A 82 TRTLIENGFVETIKEAFPEVEVIAGTATAGI-----PHGAIIADKMNLPLAYIRSKPKDHGAGNQIE----G-RV---TK 148 (243)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEETTTTH-----HHHHHHHHHTTCCEEEECSSCC-----CCEE----S-CC---CT
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEecCchH-----HHHHHHHHHcCCCEEEEEEeeccCCceeEEE----e-cc---CC
Confidence 3445677777766532 2223333333333 23456788889998765321 1222111100 0 00 01
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCC-C-----hHHHHHH
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQER-D-----PIERIRK 326 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~-D-----Pi~~~~~ 326 (347)
|-..+-|| |+..-=..+..+++..++.|+.++.+.+.=- +....-.+...+.. + -+..+-+
T Consensus 149 Gk~VLIVD--DvitTG~Tl~~a~~~L~~~Ga~vv~v~~l~d-----------~~~~~a~e~l~~~gi~~~sL~~~~dl~~ 215 (243)
T 3dez_A 149 GQKMVIIE--DLISTGGSVLDAVAAAQREGADVLGVVAIFT-----------YELPKATANFEKASVKLVTLSNYSELIK 215 (243)
T ss_dssp TCEEEEEE--EEESSSHHHHHHHHHHHHTTCEEEEEEEEEE-----------CCCHHHHHHHHHHTCCEEESSCHHHHHH
T ss_pred CCEEEEEE--eeccccHHHHHHHHHHHHCCCEEEEEEEEEE-----------CCCchHHHHHHhcCCCEEEEeeHHHHHH
Confidence 33346677 5544444555555555556777776664211 11111112221111 1 2566778
Q ss_pred HHHHcCCCCHHHHHHHHh
Q 019023 327 LILAHDLATEKELKSVSD 344 (347)
Q Consensus 327 ~L~~~g~~t~~e~~~i~~ 344 (347)
++.+.|.+++++++.+++
T Consensus 216 ~~~~~~~i~~~~~~~~~~ 233 (243)
T 3dez_A 216 VAKVQGYIDADGLTLLKK 233 (243)
T ss_dssp HHHHTTSSCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 888999999999998875
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=37.04 E-value=88 Score=25.13 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=51.7
Q ss_pred eEEEEeCCcc-cccchHHHHHHHHHHcCCCeEEEEecCCccc---cccccccc----CCch----------Hhh--hcCC
Q 019023 194 VTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNHYGM---GTAEWRAA----KSPS----------YYK--RGDY 253 (347)
Q Consensus 194 ~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~~~---~~~~~~~~----~~~d----------~~~--~g~g 253 (347)
.++.|-||-- .-+-..-|-+..|..+.=.+.+-+.-|..-+ +.|.+... .... |.- .|.|
T Consensus 4 m~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsg 83 (170)
T 4hhu_A 4 MVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSG 83 (170)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCC
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCce
Confidence 3555666543 2233455666666666555666666666532 12211100 0000 100 1345
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhcc-CCCE
Q 019023 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPM 284 (347)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~ 284 (347)
+-.++..|.|.+++..|+++.+..+|+ .|.+
T Consensus 84 vm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 84 VMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 555788999999999999999988888 6643
No 94
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=35.85 E-value=90 Score=26.73 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCC--CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC-CcccccccccccCCchHhhhcCCc
Q 019023 178 LGCGLAFAQKYSK--DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWRAAKSPSYYKRGDYV 254 (347)
Q Consensus 178 ~a~G~A~A~k~~~--~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN-~~~~~~~~~~~~~~~d~~~~g~gi 254 (347)
..++-.++.++.. .+.-+|+-+--|++ .=+..+|...++|++++--.. +|+-.... .. .+. -|-
T Consensus 46 ~~l~~~la~~i~~~~~~~d~Iv~v~~~g~-----~~a~~la~~l~~p~~~~rk~~k~~g~~~~~----~g-~~~---~gk 112 (205)
T 2wns_A 46 SQVADILFQTAQNAGISFDTVCGVPYTAL-----PLATVICSTNQIPMLIRRKETKDYGTKRLV----EG-TIN---PGE 112 (205)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECTTTTH-----HHHHHHHHHHTCCEEEECCTTTTSSSCCSE----ES-CCC---TTC
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCchH-----HHHHHHHHHHCcCEEEEecCcCccCccccc----cC-CCC---CCC
Confidence 3445566665542 22224443433322 224567777899987642221 12211110 00 110 133
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhCCCh------HHHHHHHH
Q 019023 255 PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDP------IERIRKLI 328 (347)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~Yr~~~e~~~~~~~~DP------i~~~~~~L 328 (347)
..+-|| |+..-=..+..+.+..++.|+..|.+.+.=... .. ..+. ..+...| +..+-+++
T Consensus 113 ~VliVD--DvitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~----~~-----~~~~---l~~~g~~v~sl~~~~~~~~~~ 178 (205)
T 2wns_A 113 TCLIIE--DVVTSGSSVLETVEVLQKEGLKVTDAIVLLDRE----QG-----GKDK---LQAHGIRLHSVCTLSKMLEIL 178 (205)
T ss_dssp BEEEEE--EEESSSHHHHHHHHHHHHTTCBCCEEEEEEECC----SS-----HHHH---HHTTTCEEEEEEEHHHHHHHH
T ss_pred EEEEEE--EeccccHHHHHHHHHHHHCCCEEEEEEEEEEcC----cc-----hHHH---HHHcCCeEEEEEEHHHHHHHH
Confidence 446676 554434444455554445556555544321111 00 1222 2222344 46678889
Q ss_pred HHcCCCCHHHHHHHHhh
Q 019023 329 LAHDLATEKELKSVSDL 345 (347)
Q Consensus 329 ~~~g~~t~~e~~~i~~~ 345 (347)
.+.|.+++++++.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (205)
T 2wns_A 179 EQQKKVDAETVGRVKRF 195 (205)
T ss_dssp HHTTSSCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHH
Confidence 99999999999998753
No 95
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=32.70 E-value=56 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=28.5
Q ss_pred CceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEe
Q 019023 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE 228 (347)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~ 228 (347)
...+|+++.||..+.+...+++..+...++++..|-.
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igi 147 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGV 147 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEe
Confidence 4578999999999887777888888777777655543
No 96
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.93 E-value=34 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 321 IERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 321 i~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
+..+-++|+++|++|+++.+.|+.+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 5668889999999999999999864
No 97
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=31.04 E-value=2e+02 Score=30.90 Aligned_cols=101 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhCCCCceE-E-EEeCCcccccc--hHHHHHH-HH-HHc--CCCeEEEEecCCc-ccccccccccCCch
Q 019023 176 IPLGCGLAFAQKYSKDETVT-F-ALYGDGAANQG--QLFEALN-IA-ALW--DLPAILVCENNHY-GMGTAEWRAAKSPS 246 (347)
Q Consensus 176 ~p~a~G~A~A~k~~~~~~~v-v-~~~GDGa~~~G--~~~Ealn-~A-a~~--~LPvi~vv~NN~~-~~~~~~~~~~~~~d 246 (347)
++.|.|+|++ +....+ | +.+|| |.+| ..++-+- -+ +.| ++|+++++.. +| +.+ +...+....+
T Consensus 665 vg~a~G~A~~----G~~~lpv~e~qf~d--F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G-~~Hss~~~E~ 736 (933)
T 2jgd_A 665 LAFEYGYATA----EPRTLTIWEAQFGD--FANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQG-PEHSSARLER 736 (933)
T ss_dssp HHHHHHHHHH----CTTSEEEEEC-CGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSC-TTSSCCCHHH
T ss_pred HHHHHHHHhc----CCCCCCEEEEEEhh--hhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCC-cccccchHHH
Confidence 4566676665 344333 3 35665 3332 3333343 33 345 8999988875 55 332 2111111224
Q ss_pred HhhhcCCcceEEe-cCCCHHHHHHHHHHHHHHhcc-CCCEEEE
Q 019023 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILE 287 (347)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe 287 (347)
|... ..+|++.| .=.|+.+.+..++.++. +. ++|++|-
T Consensus 737 ~l~~-~~~pnm~V~~Pst~~e~~~lLr~a~~--~~~~~Pvii~ 776 (933)
T 2jgd_A 737 YLQL-CAEQNMQVCVPSTPAQVYHMLRRQAL--RGMRRPLVVM 776 (933)
T ss_dssp HHHT-CCTTCCEEECCCSHHHHHHHHHHHHH--SSCCCCEEEE
T ss_pred HHHH-hCCCCeEEEecCCHHHHHHHHHHHHH--hcCCCcEEEE
Confidence 4432 22344433 44588999999988753 24 7999983
No 98
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=28.65 E-value=60 Score=27.01 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.7
Q ss_pred ceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
.++|+..+ ....|..+| +.+|...+.||+.+..++
T Consensus 79 D~vva~~~--~~d~Gt~~E-iGyA~algKPVi~l~~~~ 113 (165)
T 2khz_A 79 DVVVAEVT--QPSLGVGYE-LGRAVALGKPILCLFRPQ 113 (165)
T ss_dssp SEEEEECS--SCCHHHHHH-HHHHHHTCSSEEEEECTT
T ss_pred CEEEEECC--CCCCCHHHH-HHHHHHCCCEEEEEEcCC
Confidence 45666665 567788999 999999999999887665
No 99
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=28.02 E-value=1.4e+02 Score=24.18 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=31.3
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecCC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN~ 231 (347)
+++.++|++.--|...+ +.+++..|...+.|+|.|..|.+
T Consensus 81 ~~~d~vi~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 81 EKDDLLILISGSGRTES--VLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp CTTCEEEEEESSSCCHH--HHHHHHHHHTTCSCEEEEESSCC
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCcEEEEeCCCC
Confidence 45678888888888764 77889999999999987776543
No 100
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=27.83 E-value=71 Score=22.86 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=23.6
Q ss_pred EEecCCCHHHHHHHHHHHHHHhcc-CCCE
Q 019023 257 LKVDGMDALAVKQACKFAKEHALK-NGPM 284 (347)
Q Consensus 257 ~~VDG~D~~av~~a~~~A~~~ar~-~gP~ 284 (347)
++..|.|.+++..|+++.+..+|+ .|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 566788999999999999998888 6643
No 101
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=27.30 E-value=1.5e+02 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
+++.++|++..-|...+ +.+++..|...+.|+|.|..|.
T Consensus 78 ~~~d~vI~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKS--LIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp CTTCEEEEECSSSCCHH--HHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCEEEEEcCCCCcHH--HHHHHHHHHHCCCEEEEEECCC
Confidence 45678888888888763 7788999999999998777653
No 102
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=27.29 E-value=63 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHhhh
Q 019023 319 DPIERIRKLILAHDLATEKELKSVSDLC 346 (347)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~e~~~i~~~~ 346 (347)
-|+..=.++|..+| +|++||++.-+++
T Consensus 33 sp~~~K~~FL~sKG-Lt~eEI~~Al~ra 59 (70)
T 2w84_A 33 SPLATRRAFLKKKG-LTDEEIDMAFQQS 59 (70)
T ss_dssp SCHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCHHHHHHHHHHc
Confidence 47888889999998 6999999876654
No 103
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=26.13 E-value=69 Score=22.03 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 319 DPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
-|+..=..+|..+| +|++||++.-++
T Consensus 28 sp~~~K~~FL~sKG-Lt~~EI~~Al~r 53 (54)
T 3ff5_A 28 SPLATRRAFLKKKG-LTDEEIDLAFQQ 53 (54)
T ss_dssp SCHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCHHHHHHHHHc
Confidence 57888888999998 689999876554
No 104
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=24.52 E-value=53 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.3
Q ss_pred CceEEEEeCCccc-ccchHHHHHHHHH-HcCCCeEEEEec
Q 019023 192 ETVTFALYGDGAA-NQGQLFEALNIAA-LWDLPAILVCEN 229 (347)
Q Consensus 192 ~~~vv~~~GDGa~-~~G~~~Ealn~Aa-~~~LPvi~vv~N 229 (347)
...+|+++|+=.- ..++.|| +..|. ..++|||.|-.+
T Consensus 80 Sk~vIllIs~~T~~s~~v~wE-Ie~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 80 SKNIILFLSSITANSRALREE-MNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp EEEEEEECCTTCCCCHHHHHH-HHHHTTTTCCCEEEEETT
T ss_pred cCcEEEEEecCccccchhHHH-HHHHHHhcCCcEEEEECC
Confidence 4568999999886 4677776 99999 999999988765
No 105
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer, psychrophilic bacteria, crystallography, hydrolase; 1.40A {Vibrio SP}
Probab=24.28 E-value=1e+02 Score=30.78 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 019023 263 DALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (347)
Q Consensus 263 D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (347)
+..++.+|++.|++++.++.-+||.+.-.-.
T Consensus 287 E~~~fD~AV~~A~~~~~~~~dTLIIVTADH~ 317 (502)
T 3e2d_A 287 ELLKFDEAIQTVYEWAKDREDTIVIVTADHE 317 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 5678889999999998765568888775443
No 106
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=24.18 E-value=72 Score=25.65 Aligned_cols=32 Identities=28% Similarity=0.202 Sum_probs=24.5
Q ss_pred CcceEEecCCCHHHHHHHHHHHHHHhcc-CCCE
Q 019023 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPM 284 (347)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~ 284 (347)
|+-.++..|.|.+++..|+++.+..+|+ .|.+
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 3444677888999999999998888887 6643
No 107
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.21 E-value=1.6e+02 Score=25.29 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCceEEEEeCCcccccchHHHHHHHHHH--cCCCeEEEEecC
Q 019023 190 KDETVTFALYGDGAANQGQLFEALNIAAL--WDLPAILVCENN 230 (347)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~--~~LPvi~vv~NN 230 (347)
+++.++|++..-|... .+.+++..|.. .+.++|.|..|.
T Consensus 105 ~~~DlvI~iS~SG~t~--~~i~~~~~ak~~~~Ga~vI~IT~~~ 145 (220)
T 3etn_A 105 QENDLLLLISNSGKTR--EIVELTQLAHNLNPGLKFIVITGNP 145 (220)
T ss_dssp CTTCEEEEECSSSCCH--HHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHhcCCCCeEEEEECCC
Confidence 4566888888888765 47788889988 888888777553
No 108
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=23.15 E-value=74 Score=26.72 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ceEEEEeCCcc-cccchHHHHHHHHHHcCCCeEEEEecCCc
Q 019023 193 TVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNHY 232 (347)
Q Consensus 193 ~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvi~vv~NN~~ 232 (347)
.++|+++ ||. ...|..+| +.+|...+.||+.+..+-..
T Consensus 71 D~viA~l-dg~~~D~Gt~~E-iG~A~a~gkPVi~~~~D~R~ 109 (162)
T 3ehd_A 71 DLLVALL-DGPTIDAGVASE-IGVAYAKGIPVVALYTDSRQ 109 (162)
T ss_dssp SEEEEEC-CSSSCCHHHHHH-HHHHHHTTCCEEEECCCGGG
T ss_pred CEEEEEC-CCCCCCCCHHHH-HHHHHHCCCEEEEEEcCccc
Confidence 3455555 665 57899999 99999999999988776543
No 109
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=22.63 E-value=69 Score=28.62 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 311 ISGVRQERDPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
|+.|. .-+.+.|+++|++|++||++..++
T Consensus 73 Ye~WL------~ale~lLvekGvit~~EL~~r~~~ 101 (229)
T 3hht_B 73 YGHWI------ATVAYNLVDTGVLDEKELDERTEV 101 (229)
T ss_dssp HHHHH------HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 56674 469999999999999999987765
No 110
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.53 E-value=55 Score=24.80 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHhh
Q 019023 324 IRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 324 ~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
+-++|+++|++|+++.+.|+.+
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~ 47 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRA 47 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHhc
Confidence 7788999999999999999864
No 111
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=21.45 E-value=1.3e+02 Score=24.51 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=25.3
Q ss_pred CceEEEEeCCcccccch--HHHHHHHHHHcCCCeEEE
Q 019023 192 ETVTFALYGDGAANQGQ--LFEALNIAALWDLPAILV 226 (347)
Q Consensus 192 ~~~vv~~~GDGa~~~G~--~~Ealn~Aa~~~LPvi~v 226 (347)
...+++++.||..+.+. ..+++..+...++++..|
T Consensus 110 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~i 146 (198)
T 1n3y_A 110 AAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAI 146 (198)
T ss_dssp SEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEE
Confidence 35789999999987443 366777777778776554
No 112
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=20.72 E-value=1.1e+02 Score=25.83 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=22.0
Q ss_pred eEEEEeCCcccccchHHHHHHHHHHcCCCeEEE
Q 019023 194 VTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (347)
Q Consensus 194 ~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~v 226 (347)
+++.+.||+....+...++...++..++.+.+|
T Consensus 109 iiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~I 141 (192)
T 2x5n_A 109 IVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDII 141 (192)
T ss_dssp EEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHCCCEEEEE
Confidence 355556666445566777777888888776554
No 113
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=20.61 E-value=67 Score=28.16 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.5
Q ss_pred HHHHHhCCChHHHHHHHHHHcCCCCHHHHHHH
Q 019023 311 ISGVRQERDPIERIRKLILAHDLATEKELKSV 342 (347)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i 342 (347)
|+.|. ..+.+.|+++|++|++||++-
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~a~ 94 (206)
T 4fm4_B 69 FERVF------TTAVTLCIEKGVFTAAELEAK 94 (206)
T ss_dssp HHHHH------HHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCcCHHHHhhc
Confidence 56664 458999999999999999864
No 114
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.51 E-value=1.8e+02 Score=24.35 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.0
Q ss_pred CCceEEEEeCCcccccchHHHHHHHHHHcCCCeEEEEecC
Q 019023 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvi~vv~NN 230 (347)
++.++|++..-|...+ +.+++..|...+.|+|.|..|.
T Consensus 89 ~~DvvI~iS~SG~t~~--~i~~~~~ak~~g~~vI~IT~~~ 126 (200)
T 1vim_A 89 DQDVLVGISGSGETTS--VVNISKKAKDIGSKLVAVTGKR 126 (200)
T ss_dssp TTCEEEEECSSSCCHH--HHHHHHHHHHHTCEEEEEESCT
T ss_pred CCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 4567777777776653 6778888888888887776543
No 115
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=20.37 E-value=83 Score=28.00 Aligned_cols=29 Identities=7% Similarity=-0.153 Sum_probs=23.5
Q ss_pred HHHHHhCCChHHHHHHHHHHcCCCCHHHHHHHHhh
Q 019023 311 ISGVRQERDPIERIRKLILAHDLATEKELKSVSDL 345 (347)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~ 345 (347)
|+.|. .-+.+.|+++|++|++||++..++
T Consensus 69 Ye~Wl------~ale~lLvekGvit~~EL~ar~~~ 97 (226)
T 1ugp_B 69 YWHWI------RTYIHHGVRTGKIDLEELERRTQY 97 (226)
T ss_dssp HHHHH------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 56664 469999999999999999876543
No 116
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=20.25 E-value=1.6e+02 Score=26.39 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCeEEEEecC
Q 019023 210 FEALNIAALWDLPAILVCENN 230 (347)
Q Consensus 210 ~Ealn~Aa~~~LPvi~vv~NN 230 (347)
+.++.-|...++|+|-+|+-|
T Consensus 127 ~~ai~EA~~l~IPvIalvDTn 147 (241)
T 2xzm_B 127 FQAIKEASYVNIPVIALCDSD 147 (241)
T ss_dssp HHHHHHHTTTTCCEEECCCSS
T ss_pred hHHHHHHHHhCCCEEEEecCC
Confidence 457888889999999888554
Done!