BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019024
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246
VLPC H FHA+C+++ + CP+C GP
Sbjct: 41 VLPCNHEFHAKCVDKWLKANRT----CPICRADSGP 72
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 18/60 (30%)
Query: 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
KC +C +L + G D+ LPC H+FH C++Q I CP+C
Sbjct: 16 KCTICLSILEE-----------GEDVRR---LPCMHLFHQVCVDQWL----ITNKKCPIC 57
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 209 AGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCL 241
A VLPC H+ H C E++ + CPLC+
Sbjct: 22 AHVLPCGHLLHRTCYEEMLKEGY----RCPLCM 50
>pdb|3U3I|A Chain A, A Rna Binding Protein From Crimean-Congo Hemorrhagic Fever
Virus
Length = 482
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 63 YVSKAVYPLVFHNPVSDCETFGDAETSSVGRLTPGEDHISPSHWLDNNSSTVQKFHRTFT 122
Y S V F P+ +C A SS G + G + W + N+ T++ + ++T
Sbjct: 63 YASALVEATKFCAPIYEC-----AWVSSTGIVKKGLE------WFEKNAGTIKSWDESYT 111
Query: 123 ELQRLETSPDPGASSRREGFRWSSASSYDFGF 154
EL+ + A ++ +W D GF
Sbjct: 112 ELKVEVPKIEQLADYQQAALKWRK----DIGF 139
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 20/118 (16%)
Query: 78 SDCETFGDAETSSVGRLTPGEDHISPSHWLDNNSSTVQKFHRTFTELQRLETSPDPGASS 137
+D TFGD TSS +H+ ++ + + + + L R T P
Sbjct: 264 ADGPTFGDTVTSS--------EHLCGINFTGSVPTFKHLWRQVAQNLDRFRTFPRLAGEC 315
Query: 138 RREGFRWSSASSYDFGFDGERFDIADHIDLESLRSPVGPVAGQKCGVCSKLLSQKSPW 195
+ F + +S+ D+ D + +LRS GQKC CS+L KS W
Sbjct: 316 GGKNFHFVHSSA----------DV-DSVVSGTLRSAF-EYGGQKCSACSRLYVPKSLW 361
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
G+ PC+H FH +CL + ++ CPLC
Sbjct: 32 GICPCKHAFHRKCLIKWLEVRKV----CPLC 58
>pdb|3NIB|A Chain A, Teg14 Apo
Length = 309
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 157 ERFDIADHIDLESLRSPVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGD 205
E D+ D +D+E +R V ++ K Q+ W+S RGG+
Sbjct: 215 EFLDLGDPVDIEDIRRAVAACTLERMRELEKRSQQQGQWASMTGGRGGE 263
>pdb|4DQ8|A Chain A, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
pdb|4DQ8|B Chain B, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
Length = 391
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPL 239
Q CG+ + HR++ GG L V L++L+P +H PP L
Sbjct: 74 QSCGLVA---------VGHRVVHGGKDFYEPTLLNDAVIGK--LDELSPLAPLHNPPAVL 122
Query: 240 CLKI 243
C+++
Sbjct: 123 CIRV 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,806
Number of Sequences: 62578
Number of extensions: 361016
Number of successful extensions: 787
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 12
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)