BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019024
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 21/66 (31%)
Query: 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQ-LTPKTQIHE 234
VAG +C VC LL +K A +LP C+HVFH C++ LT ++
Sbjct: 95 VAGTECAVCLSLLEEKD--------------NARMLPNCKHVFHVSCVDTWLTTQST--- 137
Query: 235 PPCPLC 240
CP+C
Sbjct: 138 --CPVC 141
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 32/118 (27%)
Query: 142 FRWSSASSYDFGFDGERFDIADHIDLESL-----RSPVGPVAGQKCGVCSKLLSQKSPWS 196
F S+ASS +RF D +ESL + G G C VC S +
Sbjct: 85 FNRSTASS-------DRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVC------LSKFE 131
Query: 197 SHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLEESSSV 253
S I+R +LP CRH FH C++Q + CPLC V +EE SSV
Sbjct: 132 SVEILR--------LLPKCRHAFHIGCIDQWLEQ----HATCPLCRDRVS-MEEDSSV 176
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPP 236
+ GQ C VC + +G D GVLPC+H FH +CL + +
Sbjct: 88 LYGQTCAVCLE------------DFKGKD--ELGVLPCQHAFHRKCLVKWLEVRCV---- 129
Query: 237 CPLCLK-IVGPLEESSSVSEPL 257
CP+C K I GP E S S+ L
Sbjct: 130 CPMCNKPIAGPTETSQSIGILL 151
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245
TA VLPC+H F CLE + HE CP C +VG
Sbjct: 62 TAKVLPCQHTFCRRCLESIV--CSRHELRCPECRILVG 97
>sp|Q7ZWF4|RN145_DANRE RING finger protein 145 OS=Danio rerio GN=rnf145 PE=2 SV=1
Length = 685
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 205 DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
DM +A + PC H FHA CL+ K + CPLC
Sbjct: 543 DMKSAVITPCSHFFHAACLK----KWLYVQETCPLC 574
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245
TA VLPC+H F CLE + HE CP C +VG
Sbjct: 67 TAKVLPCQHTFCRRCLESIV--CSRHELRCPECRILVG 102
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC----LKIVGPLEESSSVSEPLQMVLRS 263
+L C+H FH C++ P H CP+C LK++G + + +EPLQ+++ S
Sbjct: 271 ILTCKHFFHKNCID---PWILSH-GTCPICKCDILKVLGIQVDVENGTEPLQVLMSS 323
>sp|Q1MTR5|YG66_SCHPO Uncharacterized RING finger membrane protein C15C4.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.06c PE=4 SV=1
Length = 556
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPL 239
++C +C S++SP LPC H+FH C++ P + CPL
Sbjct: 496 RECTICLCEYSEESPLYRE-------------LPCHHIFHPACID---PYLLKNSDLCPL 539
Query: 240 CLKIVGPLEESSS 252
C + V + E++S
Sbjct: 540 CKQSVTNMLENAS 552
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 185 CSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPP---CPLC 240
CS L+ SP R+ G +L C HVFH CL L + PP CPLC
Sbjct: 293 CSICLAPLSPAGGQRVGAGQRSRETALLSCSHVFHHACLLALEEFSVGDRPPFHACPLC 351
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 182 CGVCSK---LLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ-LTPKTQIHEPPC 237
C +C + ++ P +H++ D + V PC HVFH CLE + K Q C
Sbjct: 699 CAICMSDVPIYIEEIP-ETHKV----DQHSYMVTPCNHVFHTSCLENWMNYKLQ-----C 748
Query: 238 PLCLKIVGPL 247
P+C + PL
Sbjct: 749 PVCRSPLPPL 758
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCP 238
G + VC+ L + RI LPC H +H +C++ KT+ CP
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRI-----------LPCSHAYHCKCVDPWLTKTK---KTCP 279
Query: 239 LCLKIVGP-----------LEESSSVSE--PLQMVLRSVQRSKGIMISEADGDHSNTEAS 285
+C + V P +E + V+E PL L SV +SE+ + TE+S
Sbjct: 280 VCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESS 339
Query: 286 DH 287
D+
Sbjct: 340 DY 341
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 27/122 (22%)
Query: 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCP 238
G + VC+ L + RI LPC H +H +C++ KT+ CP
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRI-----------LPCSHAYHCKCVDPWLTKTK---KTCP 279
Query: 239 LCLKIVGP-----------LEESSSVSE--PLQMVLRSVQRSKGIMISEADGDHSNTEAS 285
+C + V P +E + V+E PL L SV +SE+ + TE+S
Sbjct: 280 VCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLLRPLASVSAQSFGALSESRSHQNMTESS 339
Query: 286 DH 287
D+
Sbjct: 340 DY 341
>sp|Q96MT1|RN145_HUMAN RING finger protein 145 OS=Homo sapiens GN=RNF145 PE=2 SV=2
Length = 663
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 205 DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
DM +A + PC H FHA CL+ K + CPLC
Sbjct: 543 DMKSAVITPCSHFFHAGCLK----KWLYVQETCPLC 574
>sp|Q5SWK7|RN145_MOUSE RING finger protein 145 OS=Mus musculus GN=Rnf145 PE=2 SV=1
Length = 663
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 205 DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
DM +A + PC H FHA CL+ K + CPLC
Sbjct: 543 DMKSAVITPCSHFFHAGCLK----KWLYVQDTCPLC 574
>sp|Q7TPH6|MYCB2_MOUSE Probable E3 ubiquitin-protein ligase MYCBP2 OS=Mus musculus GN=Mycbp2
PE=1 SV=2
Length = 4711
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 212 LPCRHVFHAECLEQ------LTPKTQIHEPPCPLCLKIVGPLEESSSVSEPLQMVLRSVQ 265
L C HVFH +C + L P+ CP+C + + + +P++ + V+
Sbjct: 4477 LDCSHVFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI-VLKDLLDPIKELYEDVR 4535
Query: 266 RSKGIMISEADGDHSNTEASDHIRNKLGRGPR-WSDSGSSLKNRLKRHFSFKASKDMF 322
R K +M E +G H + + G R ++D+ NR + +K K F
Sbjct: 4536 R-KALMRLEYEGLHKSEAITT-------PGVRFYNDAAGYAMNRYAYYVCYKCRKAYF 4585
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPC 237
G +C VC L D A VLP C H FH +C++ Q H C
Sbjct: 117 GLECAVCLSDLV--------------DGDKARVLPRCNHGFHVDCIDMWF---QSH-STC 158
Query: 238 PLCLKIVGPLEESS 251
PLC VG +E+++
Sbjct: 159 PLCRNTVGSVEDTT 172
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 18/63 (28%)
Query: 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPC 237
AG++C +C L K R M LPC+HV+H+EC+ + ++ C
Sbjct: 193 AGERCVICQ--LKYKI---GERQMN---------LPCKHVYHSECISKWLSINKV----C 234
Query: 238 PLC 240
P+C
Sbjct: 235 PVC 237
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 27/122 (22%)
Query: 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCP 238
G + VC+ L + RI LPC H +H +C++ KT+ CP
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRI-----------LPCSHAYHCKCVDPWLTKTK---KTCP 279
Query: 239 LCLKIVGP-----------LEESSSVSE--PLQMVLRSVQRSKGIMISEADGDHSNTEAS 285
+C + V P +E + VSE PL L S +SE+ + TE+S
Sbjct: 280 VCKQKVVPSQGDSDSDTDSSQEENEVSEHTPLLRPLASASTQSFGALSESRSHQNMTESS 339
Query: 286 DH 287
D+
Sbjct: 340 DY 341
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 30/121 (24%)
Query: 174 VGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIH 233
+GP G C VC + P+ ++R +L C H FH C++ +
Sbjct: 253 LGP-DGDSCAVCIE------PYKPSDVVR--------ILTCNHFFHKNCIDPWL----LE 293
Query: 234 EPPCPLC-------LKIVGPLEESSSVSEPLQMVLRSVQRSKGIMISEADGDHSNTEASD 286
CP+C L I EE +SV+ P V +QRS + I+E + +HS T +S
Sbjct: 294 HRTCPMCKCDILKSLGIAEDEEEGTSVAIP--SVSSELQRST-VQITEEE-NHSETASSG 349
Query: 287 H 287
+
Sbjct: 350 Y 350
>sp|P87119|MU145_SCHPO RING finger protein mug145 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=mug145 PE=1 SV=1
Length = 309
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
VLPC HVFH +C++ + CPLC
Sbjct: 220 VLPCEHVFHTQCIDTWMTTMK---ASCPLC 246
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 201 MRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLEESSSVSEPLQMV 260
M D A +PC H+F CL++ CPLC K V P E S P+ +
Sbjct: 114 MNENDEKQATKMPCGHIFGKNCLQKWLENHCT----CPLCRKEV-PHETVGSAHPPILFI 168
Query: 261 ------LRSVQRSKGIMISEA-DGDHSNTEASDHIRNKLGRG 295
LR Q + + A +G HS+ S+ + N G
Sbjct: 169 IPHSHTLRGNQGNTAVSQENASNGVHSDFHPSEELNNANTDG 210
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP-----------LEESSSVSE--PL 257
+LPC H +H +C++ KT+ CP+C + V P +E + VSE PL
Sbjct: 255 ILPCSHAYHCKCVDPWLTKTK---KTCPVCKQKVVPSQGDSDSETDSSQEENEVSENTPL 311
Query: 258 QMVLRSVQRSKGIMISEADGDHSNTEASDH 287
L SV +SE+ + TE+S++
Sbjct: 312 LRPLASVSTQSFGALSESHSHQNMTESSEY 341
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC-------LKIVGPLEESSSVSEPLQMVLRS 263
VLPC+HVFH C++ P H CP+C L IV L + +V+ ++ + R+
Sbjct: 279 VLPCKHVFHKSCVD---PWLSEH-CTCPMCKLNILKALGIVPNLPCTDNVAFDMERLTRT 334
Query: 264 VQRSKGIMISEADGDHS 280
++ + + GD S
Sbjct: 335 QAVNRRAALGDLAGDSS 351
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC----LKIVGPLEESSSVSEPLQMVL 261
+L C+H FH C++ P H CP+C LK++G + +EPLQ+++
Sbjct: 271 ILTCKHFFHKNCID---PWILPH-GTCPICKCDILKVLGIQVVVENGTEPLQVLM 321
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP-----------LEESSSVSE--PL 257
+LPC H +H +C++ KT+ CP+C + V P +E + VSE PL
Sbjct: 255 ILPCSHAYHCKCVDPWLTKTK---KTCPVCKQKVVPSQGDSDSDTDSSQEENQVSEHTPL 311
Query: 258 QMVLRSVQRSKGIMISEADGDHSNTEASDH 287
S + +SE+ H+ TE+SD+
Sbjct: 312 LPPSASARTQSFGSLSESHSHHNMTESSDY 341
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC-------LKIVGPLEESSSVSEPLQMVLRS 263
+LPC+HVFH C++ P H CP+C L IV L + +V+ ++ + R+
Sbjct: 279 ILPCKHVFHKSCVD---PWLSEH-CTCPMCKLNILKALGIVPNLPCTDNVAFDMERLTRT 334
Query: 264 VQRSKGIMISEADGDHS 280
++ + + GD+S
Sbjct: 335 QAVNRRSALGDLAGDNS 351
>sp|Q9H0M5|ZN700_HUMAN Zinc finger protein 700 OS=Homo sapiens GN=ZNF700 PE=2 SV=1
Length = 742
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 17/168 (10%)
Query: 169 SLRSPVGPVAGQK---CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ 225
S+R+ G+K C VC K S H +M GD T C FH+ L
Sbjct: 180 SIRTQERDHTGEKPYACKVCGKTFIFHSSIRRHMVMHSGD-GTYKCKFCGKAFHSFSLYL 238
Query: 226 LTPKTQIHEPP--CPLCLKIVGPLEESSSVSEPLQMVLRSVQRSKGIMISEADGD-HSNT 282
+ +T E P C C K S + S LQ+ R+ K S+ D HS++
Sbjct: 239 IHERTHTGEKPYECKQCGK-------SFTYSATLQIHERTHTGEKPYECSKCDKAFHSSS 291
Query: 283 EASDHIRNKLGRGP-RWSDSGSSLK--NRLKRHFSFKASKDMFSTKVF 327
H R+ +G P + + G + + L+RH + K + K +
Sbjct: 292 SYHRHERSHMGEKPYQCKECGKAFAYTSSLRRHERTHSGKKPYECKQY 339
>sp|Q5RAK3|RN180_PONAB E3 ubiquitin-protein ligase RNF180 OS=Pongo abelii GN=RNF180 PE=2
SV=1
Length = 592
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 213 PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244
PCRH+F CL L K PCPLC I+
Sbjct: 447 PCRHIFCEPCLRTLA-KDNPSSTPCPLCRTII 477
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
+LPC+H FH EC+ KT CPLC
Sbjct: 85 ILPCKHEFHEECILLWLKKTN----SCPLC 110
>sp|P51522|ZNF83_HUMAN Zinc finger protein 83 OS=Homo sapiens GN=ZNF83 PE=2 SV=3
Length = 516
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIH--EPP-- 236
KC +C K+ ++KS +SH+ + G+ P C VFH + L +IH E P
Sbjct: 122 KCDICGKIFNKKSNLASHQRIHTGEKPYK-CNECGKVFHN--MSHLAQHRRIHTGEKPYK 178
Query: 237 CPLCLKIVGPL 247
C C K+ +
Sbjct: 179 CNECGKVFNQI 189
>sp|Q91187|RAG1_ONCMY V(D)J recombination-activating protein 1 OS=Oncorhynchus mykiss
GN=rag1 PE=3 SV=1
Length = 1073
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 38/158 (24%)
Query: 173 PVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQI 232
PV ++ C VC LLS+ P S PCRH+F C+ +
Sbjct: 301 PVDFLSSVTCQVCDHLLSE--PVQS---------------PCRHLFCRSCIAKYIYSLG- 342
Query: 233 HEPPCPLCLKIVGPLEESSSV--------SEPL---------QMVLRSVQ-RSKGIMISE 274
P CP C GP + ++ S PL Q+ L S + G + E
Sbjct: 343 --PHCPACTLPCGPADLTAPAKGFLGVLHSLPLLCPRESCGEQVRLDSFRAHCLGHHLEE 400
Query: 275 ADGDHSNTEASDHIRNKLGRGPRWSDSGSSLKNRLKRH 312
DGDH + E S + +G R SL R ++H
Sbjct: 401 VDGDHKSAENSLDNFLPVNKGGRPRQHLLSLTRRAQKH 438
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLC----LKIVGPLEESSSVSEPLQMVLRSVQR 266
VLPC+HVFH C++ P H CP+C LK +G + + ++ + + + R
Sbjct: 279 VLPCKHVFHKSCVD---PWLSEH-CTCPMCKLNILKALG-IVPNLPCTDNVAFDMERLTR 333
Query: 267 SKGIMISEADGDHSN 281
++ + A GD +N
Sbjct: 334 TQAVNRRSALGDLAN 348
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
+PC+HVFH +C L P ++H CP+C
Sbjct: 232 MPCKHVFHQDC---LLPWLELHN-SCPVC 256
>sp|Q17551|RPM1_CAEEL E3 ubiquitin-protein ligase rpm-1 OS=Caenorhabditis elegans GN=rpm-1
PE=1 SV=1
Length = 3766
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 212 LPCRHVFHAECLEQLT------PKTQIHEPPCPLCLKIVGPLEES--SSVSEPLQMVLRS 263
L C H+FH C+ + P+ CPLC++ P+E S + EPL+ + +
Sbjct: 3533 LGCGHMFHFHCVRMILERRWNGPRIVFRFMQCPLCIQ---PIEHSGLQDLIEPLKTIRQE 3589
Query: 264 VQRSKGIMISEADG 277
V K M E DG
Sbjct: 3590 VV-DKAKMRLEYDG 3602
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 205 DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
DM +A + PC H FH CL+ K + CPLC
Sbjct: 543 DMNSAVITPCSHFFHPGCLK----KWLYVQETCPLC 574
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246
+ C H FHA CLEQ T CP+C + P
Sbjct: 274 ILCNHSFHARCLEQWADNT------CPVCRYVQSP 302
>sp|Q5F3B2|RN166_CHICK RING finger protein 166 OS=Gallus gallus GN=RNF166 PE=2 SV=1
Length = 244
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP--LEESSSVSEPL 257
G+ C H F ECL+ P Q+ P CPLC P +E++SSV + L
Sbjct: 50 AVGIAGCGHTFCGECLQ---PCLQVPSPLCPLCRMPFDPKKVEKASSVEKQL 98
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 205 DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240
DM +A + PC H FH CL+ K + CPLC
Sbjct: 543 DMNSAVITPCSHFFHPGCLK----KWLYVQETCPLC 574
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 202 RGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK-IVG 245
RG DM T LPC H+ H CL + Q CP+C + ++G
Sbjct: 317 RGLDM-TPKRLPCGHILHFHCLRNWLERQQT----CPICRRSVIG 356
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 140 EGFRWSSASSYDFGFDGERFDIADHIDLESLRSPVGPVAGQKCGVCSKLLSQKSPWSSHR 199
EGF +SS DG + I + +S G V G C VC LS+ S R
Sbjct: 101 EGF-FSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVC---LSEFEENESLR 156
Query: 200 IMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV-GPLEESSSVSEPLQ 258
++ C H FH C++ CPLC V G ++SV + +
Sbjct: 157 LLP----------KCNHAFHLPCIDTWLKS----HSNCPLCRAFVTGVNNPTASVGQNVS 202
Query: 259 MVL 261
+V+
Sbjct: 203 VVV 205
>sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 OS=Homo sapiens GN=ZNF473 PE=1 SV=1
Length = 871
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 150 YDFGFDGERFDIADHIDLESLRSPVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMP 207
Y +G G+ A I L+S + P KC C K S + S H+++ G+ P
Sbjct: 619 YKWGEQGKAISSASLIKLQSFHTKEHPF---KCNECGKTFSHSAHLSKHQLIHAGENP 673
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,192,442
Number of Sequences: 539616
Number of extensions: 5492112
Number of successful extensions: 15378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 15304
Number of HSP's gapped (non-prelim): 161
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)