Query 019024
Match_columns 347
No_of_seqs 264 out of 1294
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 1E-12 2.2E-17 92.7 2.0 44 180-241 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.2 6.9E-12 1.5E-16 98.3 3.8 57 177-241 17-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.1 1.9E-11 4.2E-16 120.8 2.5 51 180-247 230-280 (348)
4 PF12861 zf-Apc11: Anaphase-pr 99.1 1.1E-10 2.3E-15 95.2 4.1 63 178-245 20-82 (85)
5 PHA02929 N1R/p28-like protein; 98.9 5.8E-10 1.3E-14 105.6 3.9 57 178-247 173-229 (238)
6 cd00162 RING RING-finger (Real 98.8 3.5E-09 7.5E-14 71.6 3.5 45 181-244 1-45 (45)
7 COG5243 HRD1 HRD ubiquitin lig 98.8 3E-09 6.5E-14 106.2 4.5 64 177-248 285-349 (491)
8 COG5194 APC11 Component of SCF 98.8 3.6E-09 7.7E-14 85.7 3.5 62 179-245 20-81 (88)
9 COG5540 RING-finger-containing 98.8 2.6E-09 5.6E-14 104.4 3.2 52 178-246 322-373 (374)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.4E-09 7.3E-14 73.3 2.5 39 182-240 1-39 (39)
11 PF15227 zf-C3HC4_4: zinc fing 98.7 7E-09 1.5E-13 73.7 3.1 42 182-240 1-42 (42)
12 PLN03208 E3 ubiquitin-protein 98.7 1.1E-08 2.4E-13 94.4 3.7 52 178-246 17-80 (193)
13 PF13920 zf-C3HC4_3: Zinc fing 98.6 2E-08 4.4E-13 72.6 2.8 46 179-245 2-48 (50)
14 KOG1493 Anaphase-promoting com 98.6 1.1E-08 2.3E-13 82.4 0.6 63 178-245 19-81 (84)
15 PF00097 zf-C3HC4: Zinc finger 98.6 2.5E-08 5.5E-13 68.8 2.4 41 182-240 1-41 (41)
16 smart00184 RING Ring finger. E 98.5 5.8E-08 1.2E-12 63.3 2.9 39 182-240 1-39 (39)
17 KOG0320 Predicted E3 ubiquitin 98.5 4.6E-08 1E-12 89.4 2.9 50 177-245 129-178 (187)
18 smart00504 Ubox Modified RING 98.5 1.3E-07 2.9E-12 70.0 3.8 45 180-245 2-46 (63)
19 KOG0802 E3 ubiquitin ligase [P 98.4 7E-08 1.5E-12 100.1 2.2 52 178-245 290-341 (543)
20 PHA02926 zinc finger-like prot 98.4 1.6E-07 3.4E-12 88.7 3.9 62 178-247 169-232 (242)
21 PF13445 zf-RING_UBOX: RING-ty 98.4 1.7E-07 3.7E-12 67.4 2.4 43 182-238 1-43 (43)
22 PF14634 zf-RING_5: zinc-RING 98.4 2.6E-07 5.7E-12 65.6 3.3 44 181-242 1-44 (44)
23 KOG1734 Predicted RING-contain 98.4 1.1E-07 2.4E-12 91.8 1.3 67 170-245 215-281 (328)
24 KOG0317 Predicted E3 ubiquitin 98.4 2.4E-07 5.2E-12 89.9 3.2 50 176-246 236-285 (293)
25 KOG2930 SCF ubiquitin ligase, 98.3 1.6E-07 3.5E-12 79.4 1.1 66 176-245 43-108 (114)
26 TIGR00599 rad18 DNA repair pro 98.3 4.6E-07 1E-11 91.5 4.6 48 178-246 25-72 (397)
27 KOG0823 Predicted E3 ubiquitin 98.3 5E-07 1.1E-11 85.3 3.2 53 176-246 44-96 (230)
28 KOG0804 Cytoplasmic Zn-finger 98.1 1.5E-06 3.3E-11 88.6 2.1 70 156-245 153-222 (493)
29 KOG2164 Predicted E3 ubiquitin 98.1 3E-05 6.5E-10 80.3 11.3 51 179-246 186-237 (513)
30 TIGR00570 cdk7 CDK-activating 98.1 2.7E-06 5.8E-11 83.6 3.5 55 177-246 1-55 (309)
31 KOG2177 Predicted E3 ubiquitin 98.0 2.7E-06 5.8E-11 75.0 2.0 45 177-242 11-55 (386)
32 KOG0287 Postreplication repair 98.0 2.2E-06 4.7E-11 85.3 1.5 47 178-245 22-68 (442)
33 KOG0828 Predicted E3 ubiquitin 98.0 3E-06 6.5E-11 87.5 2.0 58 178-246 570-635 (636)
34 PF04564 U-box: U-box domain; 97.9 8.4E-06 1.8E-10 63.6 3.1 49 178-246 3-51 (73)
35 COG5574 PEX10 RING-finger-cont 97.9 6.6E-06 1.4E-10 79.3 2.7 54 173-246 209-263 (271)
36 KOG0827 Predicted E3 ubiquitin 97.9 5.3E-06 1.2E-10 83.6 1.9 51 180-244 5-55 (465)
37 PF11793 FANCL_C: FANCL C-term 97.8 3.8E-06 8.2E-11 65.7 -0.9 55 180-245 3-66 (70)
38 smart00744 RINGv The RING-vari 97.7 3E-05 6.4E-10 57.0 2.8 31 209-241 14-49 (49)
39 KOG1645 RING-finger-containing 97.5 4.3E-05 9.2E-10 77.6 2.4 53 178-244 3-55 (463)
40 KOG0825 PHD Zn-finger protein 97.4 3.9E-05 8.4E-10 82.9 0.1 52 177-246 121-172 (1134)
41 COG5432 RAD18 RING-finger-cont 97.3 0.00012 2.5E-09 72.1 2.3 44 180-244 26-69 (391)
42 PF10367 Vps39_2: Vacuolar sor 97.3 8.3E-05 1.8E-09 59.9 0.8 32 178-224 77-108 (109)
43 KOG1941 Acetylcholine receptor 97.2 9.6E-05 2.1E-09 75.0 0.8 54 177-245 363-416 (518)
44 COG5219 Uncharacterized conser 97.2 0.00014 2.9E-09 80.1 1.6 56 178-245 1468-1523(1525)
45 KOG1039 Predicted E3 ubiquitin 97.1 0.00022 4.7E-09 71.3 2.0 59 177-245 159-221 (344)
46 KOG0978 E3 ubiquitin ligase in 97.1 0.00018 4E-09 77.3 1.2 49 178-246 642-690 (698)
47 KOG0311 Predicted E3 ubiquitin 96.9 0.00013 2.8E-09 73.0 -1.5 49 178-245 42-90 (381)
48 KOG0824 Predicted E3 ubiquitin 96.8 0.00053 1.1E-08 67.5 1.4 48 178-245 6-53 (324)
49 KOG2114 Vacuolar assembly/sort 96.8 0.00054 1.2E-08 74.7 1.4 55 168-245 829-883 (933)
50 PF11789 zf-Nse: Zinc-finger o 96.7 0.001 2.2E-08 50.4 2.2 45 177-239 9-53 (57)
51 KOG4159 Predicted E3 ubiquitin 96.6 0.00097 2.1E-08 67.9 2.1 49 177-246 82-130 (398)
52 KOG4265 Predicted E3 ubiquitin 96.6 0.0011 2.5E-08 66.3 2.3 48 179-247 290-338 (349)
53 KOG1940 Zn-finger protein [Gen 96.5 0.0011 2.5E-08 64.5 1.8 50 180-247 159-208 (276)
54 KOG1785 Tyrosine kinase negati 96.4 0.0011 2.4E-08 67.7 1.0 49 178-245 368-416 (563)
55 KOG3039 Uncharacterized conser 96.2 0.0034 7.4E-08 60.8 3.2 52 178-246 220-271 (303)
56 KOG2879 Predicted E3 ubiquitin 96.2 0.0038 8.1E-08 61.1 3.5 54 177-248 237-290 (298)
57 KOG2034 Vacuolar sorting prote 96.2 0.0019 4.1E-08 70.9 1.4 37 177-228 815-851 (911)
58 PF14835 zf-RING_6: zf-RING of 95.9 0.0026 5.6E-08 50.0 0.6 45 179-245 7-51 (65)
59 KOG3970 Predicted E3 ubiquitin 95.6 0.0084 1.8E-07 57.6 2.9 52 180-246 51-106 (299)
60 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.0088 1.9E-07 57.1 3.1 52 177-246 111-162 (260)
61 COG5222 Uncharacterized conser 95.4 0.0076 1.6E-07 59.9 2.0 45 180-243 275-319 (427)
62 COG5152 Uncharacterized conser 95.3 0.0065 1.4E-07 57.4 0.9 46 179-245 196-241 (259)
63 KOG0297 TNF receptor-associate 95.2 0.0084 1.8E-07 60.7 1.6 49 178-246 20-68 (391)
64 KOG1428 Inhibitor of type V ad 95.2 0.011 2.4E-07 68.0 2.7 58 174-246 3481-3545(3738)
65 KOG4445 Uncharacterized conser 95.2 0.0066 1.4E-07 60.2 0.8 57 175-245 111-186 (368)
66 PF05883 Baculo_RING: Baculovi 95.0 0.011 2.5E-07 52.2 1.4 35 179-227 26-66 (134)
67 KOG4172 Predicted E3 ubiquitin 94.8 0.0079 1.7E-07 46.3 0.0 46 180-246 8-55 (62)
68 KOG4739 Uncharacterized protei 94.2 0.021 4.6E-07 54.6 1.4 32 208-245 17-48 (233)
69 KOG1571 Predicted E3 ubiquitin 94.2 0.02 4.3E-07 57.7 1.3 45 177-245 303-347 (355)
70 KOG1813 Predicted E3 ubiquitin 94.2 0.024 5.1E-07 56.1 1.8 50 178-248 240-289 (313)
71 KOG3800 Predicted E3 ubiquitin 94.1 0.017 3.7E-07 56.8 0.5 83 181-279 2-90 (300)
72 KOG2660 Locus-specific chromos 93.9 0.014 3.1E-07 58.1 -0.4 50 177-246 13-62 (331)
73 KOG4185 Predicted E3 ubiquitin 93.9 0.047 1E-06 52.2 3.0 53 179-245 3-55 (296)
74 PHA02862 5L protein; Provision 93.8 0.041 8.9E-07 49.6 2.3 47 179-245 2-53 (156)
75 KOG1002 Nucleotide excision re 93.6 0.03 6.5E-07 59.3 1.3 52 177-245 534-586 (791)
76 PF07800 DUF1644: Protein of u 93.5 0.04 8.7E-07 50.1 1.9 14 234-247 80-93 (162)
77 KOG0827 Predicted E3 ubiquitin 93.4 0.0069 1.5E-07 61.7 -3.5 53 177-246 194-246 (465)
78 COG5236 Uncharacterized conser 93.3 0.05 1.1E-06 55.2 2.3 51 176-245 58-108 (493)
79 PHA02825 LAP/PHD finger-like p 93.3 0.071 1.5E-06 48.6 3.0 49 177-245 6-59 (162)
80 PF14447 Prok-RING_4: Prokaryo 92.8 0.047 1E-06 41.7 0.9 33 208-246 19-51 (55)
81 PHA03096 p28-like protein; Pro 92.1 0.089 1.9E-06 51.6 2.1 53 180-243 179-232 (284)
82 PF14570 zf-RING_4: RING/Ubox 92.0 0.14 3E-06 38.1 2.6 45 182-244 1-47 (48)
83 COG5175 MOT2 Transcriptional r 91.8 0.11 2.4E-06 52.6 2.4 135 179-334 14-159 (480)
84 KOG3268 Predicted E3 ubiquitin 91.7 0.14 3E-06 47.9 2.8 35 211-245 187-228 (234)
85 PF12906 RINGv: RING-variant d 91.3 0.075 1.6E-06 38.7 0.5 42 182-240 1-47 (47)
86 KOG1001 Helicase-like transcri 91.2 0.11 2.4E-06 56.3 2.0 46 180-245 455-500 (674)
87 KOG2932 E3 ubiquitin ligase in 91.2 0.062 1.4E-06 53.7 0.0 33 210-248 105-137 (389)
88 KOG3002 Zn finger protein [Gen 90.0 0.11 2.3E-06 51.4 0.5 47 176-247 45-93 (299)
89 KOG4275 Predicted E3 ubiquitin 89.2 0.074 1.6E-06 52.8 -1.3 44 178-246 299-343 (350)
90 KOG1952 Transcription factor N 89.1 0.23 5E-06 55.0 2.2 54 178-244 190-246 (950)
91 KOG3161 Predicted E3 ubiquitin 87.0 0.26 5.6E-06 53.4 1.0 47 177-243 9-55 (861)
92 KOG0801 Predicted E3 ubiquitin 86.6 0.2 4.3E-06 46.3 -0.1 29 178-220 176-204 (205)
93 KOG1829 Uncharacterized conser 85.5 0.32 7E-06 52.0 0.8 28 208-242 531-558 (580)
94 KOG0309 Conserved WD40 repeat- 85.3 0.43 9.4E-06 52.6 1.7 26 210-239 1044-1069(1081)
95 KOG1814 Predicted E3 ubiquitin 85.2 0.43 9.3E-06 49.3 1.5 52 178-243 183-238 (445)
96 KOG1100 Predicted E3 ubiquitin 85.2 0.35 7.5E-06 45.4 0.8 30 208-245 170-200 (207)
97 KOG2066 Vacuolar assembly/sort 85.1 0.34 7.3E-06 53.4 0.7 51 178-243 783-833 (846)
98 PF08746 zf-RING-like: RING-li 84.7 0.85 1.8E-05 32.7 2.4 26 213-240 18-43 (43)
99 KOG0298 DEAD box-containing he 82.9 0.54 1.2E-05 54.3 1.1 49 178-246 1152-1200(1394)
100 KOG2817 Predicted E3 ubiquitin 82.4 0.94 2E-05 46.5 2.5 52 177-243 332-383 (394)
101 KOG0826 Predicted E3 ubiquitin 80.3 1.2 2.5E-05 45.1 2.3 49 175-243 296-344 (357)
102 PF04710 Pellino: Pellino; In 80.0 0.55 1.2E-05 48.3 0.0 67 179-245 328-401 (416)
103 COG5220 TFB3 Cdk activating ki 79.5 0.37 8.1E-06 47.0 -1.3 88 177-280 8-104 (314)
104 KOG4692 Predicted E3 ubiquitin 78.6 1.5 3.2E-05 45.0 2.5 50 176-246 419-468 (489)
105 smart00249 PHD PHD zinc finger 76.8 1.2 2.7E-05 29.8 1.0 29 212-240 18-47 (47)
106 PF13901 DUF4206: Domain of un 76.8 1.5 3.2E-05 40.7 1.8 47 178-242 151-197 (202)
107 KOG3842 Adaptor protein Pellin 76.4 2.1 4.5E-05 43.4 2.8 69 178-246 340-415 (429)
108 PLN02400 cellulose synthase 74.7 5.1 0.00011 46.0 5.5 61 175-248 32-92 (1085)
109 KOG1812 Predicted E3 ubiquitin 71.5 2.2 4.8E-05 43.4 1.7 56 177-245 144-203 (384)
110 PF05290 Baculo_IE-1: Baculovi 71.0 3.6 7.8E-05 36.9 2.6 55 178-246 79-133 (140)
111 PF14446 Prok-RING_1: Prokaryo 70.7 3.5 7.6E-05 31.5 2.2 35 178-225 4-38 (54)
112 PF10272 Tmpp129: Putative tra 70.5 2.9 6.4E-05 42.5 2.3 33 214-246 311-352 (358)
113 PF14569 zf-UDP: Zinc-binding 68.8 6.2 0.00013 32.4 3.3 60 176-248 6-65 (80)
114 PLN02436 cellulose synthase A 66.9 9.1 0.0002 44.1 5.3 59 175-246 32-90 (1094)
115 PLN02189 cellulose synthase 65.7 10 0.00022 43.6 5.4 59 176-247 31-89 (1040)
116 KOG3053 Uncharacterized conser 65.3 3.4 7.4E-05 40.7 1.5 57 176-245 17-82 (293)
117 KOG3113 Uncharacterized conser 65.3 6.1 0.00013 39.0 3.2 49 178-245 110-158 (293)
118 KOG4367 Predicted Zn-finger pr 64.9 3.6 7.7E-05 43.4 1.6 34 178-228 3-36 (699)
119 KOG3899 Uncharacterized conser 64.7 3.7 8E-05 41.3 1.6 33 214-246 325-366 (381)
120 PF00628 PHD: PHD-finger; Int 63.7 1.1 2.3E-05 32.0 -1.8 35 208-242 14-50 (51)
121 KOG1609 Protein involved in mR 62.4 4.7 0.0001 38.1 1.8 54 178-246 77-135 (323)
122 KOG4718 Non-SMC (structural ma 60.7 4.4 9.5E-05 38.9 1.3 47 178-244 180-226 (235)
123 smart00132 LIM Zinc-binding do 58.9 5.2 0.00011 25.9 1.1 38 181-245 1-38 (39)
124 KOG0269 WD40 repeat-containing 58.8 6.4 0.00014 43.7 2.3 18 213-230 798-815 (839)
125 COG5183 SSM4 Protein involved 58.0 8 0.00017 43.6 2.8 52 177-245 10-66 (1175)
126 COG5109 Uncharacterized conser 57.1 6.9 0.00015 39.7 2.0 51 177-242 334-384 (396)
127 PF03854 zf-P11: P-11 zinc fin 54.2 5.9 0.00013 29.9 0.8 32 211-246 15-47 (50)
128 PF04423 Rad50_zn_hook: Rad50 53.8 3.8 8.3E-05 30.2 -0.3 25 222-246 8-32 (54)
129 KOG4362 Transcriptional regula 53.7 4 8.8E-05 44.7 -0.2 52 179-248 21-72 (684)
130 KOG1815 Predicted E3 ubiquitin 52.2 9.2 0.0002 39.4 2.1 37 177-229 68-104 (444)
131 KOG0825 PHD Zn-finger protein 51.9 7.2 0.00016 43.8 1.3 64 177-250 94-159 (1134)
132 KOG2231 Predicted E3 ubiquitin 50.6 10 0.00022 41.6 2.2 49 181-246 2-53 (669)
133 PF04710 Pellino: Pellino; In 50.5 5.2 0.00011 41.4 0.0 58 180-243 278-337 (416)
134 KOG4577 Transcription factor L 49.6 4.3 9.3E-05 40.7 -0.7 22 213-246 111-132 (383)
135 PLN02638 cellulose synthase A 49.3 18 0.0004 41.7 4.0 59 176-247 14-72 (1079)
136 cd00350 rubredoxin_like Rubred 49.1 8.5 0.00018 25.9 0.9 21 213-243 6-26 (33)
137 PF10571 UPF0547: Uncharacteri 48.4 9 0.0002 25.0 0.9 10 181-190 2-11 (26)
138 KOG3799 Rab3 effector RIM1 and 48.3 4.8 0.0001 36.4 -0.6 55 177-244 63-117 (169)
139 PLN02915 cellulose synthase A 47.0 22 0.00048 40.9 4.2 57 177-246 13-69 (1044)
140 PF02891 zf-MIZ: MIZ/SP-RING z 46.8 18 0.00039 26.6 2.4 46 181-243 4-50 (50)
141 KOG4185 Predicted E3 ubiquitin 46.0 3.9 8.5E-05 39.1 -1.6 52 178-243 206-265 (296)
142 PF05605 zf-Di19: Drought indu 44.0 13 0.00028 27.3 1.2 12 179-190 2-13 (54)
143 KOG3842 Adaptor protein Pellin 43.5 14 0.00031 37.6 1.8 59 179-243 290-350 (429)
144 KOG0957 PHD finger protein [Ge 43.4 30 0.00064 37.4 4.2 56 174-243 539-598 (707)
145 PF00412 LIM: LIM domain; Int 43.3 6.7 0.00015 28.1 -0.4 38 182-246 1-38 (58)
146 KOG2068 MOT2 transcription fac 42.8 20 0.00043 36.3 2.7 51 178-245 248-298 (327)
147 PF06906 DUF1272: Protein of u 39.5 38 0.00082 26.3 3.1 46 180-246 6-53 (57)
148 PF07191 zinc-ribbons_6: zinc- 36.5 4.4 9.5E-05 32.5 -2.4 43 180-248 2-44 (70)
149 cd04718 BAH_plant_2 BAH, or Br 34.2 14 0.00029 33.6 0.0 28 218-245 2-29 (148)
150 KOG3039 Uncharacterized conser 34.1 26 0.00056 34.7 1.9 36 177-229 41-76 (303)
151 COG3813 Uncharacterized protei 32.4 52 0.0011 27.0 3.1 45 181-246 7-53 (84)
152 PF13717 zinc_ribbon_4: zinc-r 32.3 24 0.00053 24.3 1.1 34 180-219 3-36 (36)
153 PF13719 zinc_ribbon_5: zinc-r 31.6 24 0.00052 24.3 0.9 34 180-219 3-36 (37)
154 smart00064 FYVE Protein presen 26.9 35 0.00076 25.6 1.2 37 179-228 10-46 (68)
155 PF09723 Zn-ribbon_8: Zinc rib 26.3 23 0.00051 25.0 0.1 26 212-242 9-34 (42)
156 KOG1701 Focal adhesion adaptor 25.8 12 0.00025 39.3 -2.1 20 176-195 299-318 (468)
157 KOG2113 Predicted RNA binding 25.3 53 0.0011 33.6 2.4 47 177-246 341-388 (394)
158 PF13832 zf-HC5HC2H_2: PHD-zin 24.3 56 0.0012 26.7 2.1 34 178-225 54-87 (110)
159 cd00065 FYVE FYVE domain; Zinc 24.2 53 0.0012 23.6 1.7 36 180-228 3-38 (57)
160 COG0675 Transposase and inacti 23.6 39 0.00085 31.4 1.1 28 178-221 308-335 (364)
161 PF04216 FdhE: Protein involve 21.1 25 0.00054 34.0 -0.7 51 215-269 196-246 (290)
162 KOG0802 E3 ubiquitin ligase [P 20.8 44 0.00094 35.4 0.9 43 178-245 478-520 (543)
163 COG0068 HypF Hydrogenase matur 20.5 1.1E+02 0.0025 34.2 4.0 63 176-245 98-184 (750)
164 PF12088 DUF3565: Protein of u 20.4 49 0.0011 26.0 0.9 20 208-227 11-30 (61)
165 PLN02195 cellulose synthase A 20.1 93 0.002 35.9 3.3 55 178-245 5-59 (977)
166 KOG3970 Predicted E3 ubiquitin 20.0 62 0.0013 31.8 1.7 33 212-245 22-61 (299)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.29 E-value=1e-12 Score=92.72 Aligned_cols=44 Identities=30% Similarity=0.866 Sum_probs=35.3
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccccc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
+.|+||++.|... + .+..|+|||+||.+||.+|+... .+||+||
T Consensus 1 d~C~IC~~~~~~~------------~--~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG------------E--KVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT------------S--CEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCC------------C--eEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 3699999999642 2 56789999999999999999753 4999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.22 E-value=6.9e-12 Score=98.31 Aligned_cols=57 Identities=28% Similarity=0.664 Sum_probs=39.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccccc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
..++.|+||++.|.+..+.. .....+. .+++++|||.||.+||.+|+... .+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~---~~~~~~~-~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPEC---QAPQDEC-PIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCH---HHCTTTS--EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred CcCCcccccChhhhChhhhh---cCCcccc-ceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 34556999999996654321 1122233 45678999999999999999633 4999997
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.9e-11 Score=120.83 Aligned_cols=51 Identities=27% Similarity=0.747 Sum_probs=43.5
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
++|+||+|+|..+ | .+++|||+|.||..||+.|+.... ..||+|+.++.+-
T Consensus 230 ~~CaIClEdY~~G------------d--klRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKG------------D--KLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccC------------C--eeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCC
Confidence 3899999999653 6 788999999999999999997542 3799999998764
No 4
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.07 E-value=1.1e-10 Score=95.21 Aligned_cols=63 Identities=24% Similarity=0.540 Sum_probs=49.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+++|+||...|...+| ..-+++.+.|. ++..|+|.||.+||.+|+.... .+..||+||..+.
T Consensus 20 ~dd~CgICr~~fdg~Cp---~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP---DCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCC---CccCCCCCCce-eeccCccHHHHHHHHHHHcccc-CCCCCCCcCCeee
Confidence 47789999999986654 34556667765 4678999999999999998653 3469999998764
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.93 E-value=5.8e-10 Score=105.60 Aligned_cols=57 Identities=23% Similarity=0.534 Sum_probs=41.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
.+..|+||++.+.++. .......++++|||+||.+||.+|+. ...+||+||..+..+
T Consensus 173 ~~~eC~ICle~~~~~~---------~~~~~~~vl~~C~H~FC~~CI~~Wl~----~~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKE---------IKNMYFGILSNCNHVFCIECIDIWKK----EKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCc---------cccccceecCCCCCcccHHHHHHHHh----cCCCCCCCCCEeeEE
Confidence 4678999999886431 00111234457999999999999996 346999999987643
No 6
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=3.5e-09 Score=71.57 Aligned_cols=45 Identities=29% Similarity=0.807 Sum_probs=35.2
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
.|+||++.+.. .+.+++|||.||.+||+.|+.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~----------------~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFRE----------------PVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhC----------------ceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCcC
Confidence 49999988732 3455679999999999999974 235799999764
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3e-09 Score=106.20 Aligned_cols=64 Identities=28% Similarity=0.643 Sum_probs=44.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC-CCCCc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI-VGPLE 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~-l~kl~ 248 (347)
.++..|.||++.+....- +..-.+-++ ....|||||.||.+||..|++..+ +|||||.+ +.++.
T Consensus 285 n~D~~C~ICmde~~h~~~---~~~~~~~~~-~pKrLpCGHilHl~CLknW~ERqQ----TCPICr~p~ifd~~ 349 (491)
T COG5243 285 NSDRTCTICMDEMFHPDH---EPLPRGLDM-TPKRLPCGHILHLHCLKNWLERQQ----TCPICRRPVIFDQS 349 (491)
T ss_pred CCCCeEEEecccccCCCC---ccCcccccC-CcccccccceeeHHHHHHHHHhcc----CCCcccCccccccC
Confidence 477889999999755320 111122232 235799999999999999998543 99999999 44433
No 8
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.80 E-value=3.6e-09 Score=85.74 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=50.9
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.++|+||...+.+.++.+..+.-.+++++ ++...|.|.||.+||.+||.. ...||+|+..+.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~-v~wG~CnHaFH~HCI~rWL~T----k~~CPld~q~w~ 81 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECP-VVWGVCNHAFHDHCIYRWLDT----KGVCPLDRQTWV 81 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcce-EEEEecchHHHHHHHHHHHhh----CCCCCCCCceeE
Confidence 47899999999988877766665666765 567889999999999999974 348999999854
No 9
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.6e-09 Score=104.36 Aligned_cols=52 Identities=31% Similarity=0.784 Sum_probs=42.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+..|+||++.+.. +| .+++|||.|+||..||++|+.. +...||+||..+.+
T Consensus 322 ~GveCaICms~fiK------------~d--~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIK------------ND--RLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcc------------cc--eEEEeccCceechhHHHHHHhh---hcccCCccCCCCCC
Confidence 45789999999842 25 5789999999999999999963 44589999988764
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=3.4e-09 Score=73.26 Aligned_cols=39 Identities=41% Similarity=0.996 Sum_probs=31.3
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
|+||++.+.+ .+.+++|||+|+.+||++|+.. + ..||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~CGH~fC~~C~~~~~~~-~---~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----------------PVVVTPCGHSFCKECIEKYLEK-N---PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----------------EEEECTTSEEEEHHHHHHHHHC-T---SB-TTT
T ss_pred CCCCCCcccC----------------cCEECCCCCchhHHHHHHHHHC-c---CCCcCC
Confidence 8999998753 4568999999999999999975 2 589998
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.74 E-value=7e-09 Score=73.66 Aligned_cols=42 Identities=36% Similarity=0.787 Sum_probs=30.9
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
|+||++.|.+ .+.|+|||+|...||++|....+.....||+|
T Consensus 1 CpiC~~~~~~-----------------Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-----------------PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-----------------EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-----------------ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999964 35799999999999999997665444689998
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.69 E-value=1.1e-08 Score=94.43 Aligned_cols=52 Identities=25% Similarity=0.596 Sum_probs=40.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc------------CCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT------------QIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~------------~k~dptCPlCR~~l~ 245 (347)
....|+||++.+.. .++++|||+||..||.+|+... .+..+.||+|+..+.
T Consensus 17 ~~~~CpICld~~~d-----------------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRD-----------------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCC-----------------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 55789999988742 3457899999999999998531 123468999999976
Q ss_pred C
Q 019024 246 P 246 (347)
Q Consensus 246 k 246 (347)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 3
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.63 E-value=2e-08 Score=72.61 Aligned_cols=46 Identities=30% Similarity=0.787 Sum_probs=36.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+..|.||++... .++++||||. |+..|+.+|+. ....||+||..+.
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLK----RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHH----TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcc----cCCCCCcCChhhc
Confidence 457999998753 3578899999 99999999997 3358999999875
No 14
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=82.39 Aligned_cols=63 Identities=25% Similarity=0.592 Sum_probs=49.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+++|+||.-.|...+| +.-++++|+|.| +..|.|.||++||.+|+.... ....||+||..+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp---~Ck~PgDdCPLv-~G~C~h~fh~hCI~~wl~~~t-sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCP---DCKLPGDDCPLV-WGYCLHAFHAHCILKWLNTPT-SQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCC---CCcCCCCCCccH-HHHHHHHHHHHHHHHHhcCcc-ccccCCcchheeE
Confidence 34589999999987665 445677888863 457999999999999996544 3368999998754
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.59 E-value=2.5e-08 Score=68.76 Aligned_cols=41 Identities=32% Similarity=0.853 Sum_probs=33.4
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
|+||++.+.. .+.+++|||.|+.+||.+|+... ....||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----------------PVILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----------------EEEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccC----------------CCEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 8999998854 23579999999999999999752 33589998
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.54 E-value=5.8e-08 Score=63.30 Aligned_cols=39 Identities=33% Similarity=0.893 Sum_probs=30.8
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
|+||++... ...+++|||+||.+||+.|+.. ....||+|
T Consensus 1 C~iC~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~---~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----------------DPVVLPCGHTFCRSCIRKWLKS---GNNTCPIC 39 (39)
T ss_pred CCcCccCCC-----------------CcEEecCCChHHHHHHHHHHHh---CcCCCCCC
Confidence 789987731 3567899999999999999972 23579998
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.6e-08 Score=89.41 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=39.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.....|+|||+.+.++ +.....|||||+.+||+..+... ..||+|++.|.
T Consensus 129 ~~~~~CPiCl~~~sek---------------~~vsTkCGHvFC~~Cik~alk~~----~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK---------------VPVSTKCGHVFCSQCIKDALKNT----NKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhc---------------cccccccchhHHHHHHHHHHHhC----CCCCCcccccc
Confidence 4558899999999774 22336799999999999998744 37999999655
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.48 E-value=1.3e-07 Score=69.99 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=37.3
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+||++.+.. | ++++|||+|..+||.+|+.. +..||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~---------------P--v~~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD---------------P--VILPSGQTYERRAIEKWLLS----HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC---------------C--EECCCCCEEeHHHHHHHHHH----CCCCCCCcCCCC
Confidence 469999999853 2 46799999999999999974 358999998874
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7e-08 Score=100.07 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=41.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|.||.+.|.... --++..|+|||+||..||..|+... -+||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~------------~~~~~rL~C~Hifh~~CL~~W~er~----qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGH------------NITPKRLPCGHIFHDSCLRSWFERQ----QTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhcccc------------ccccceeecccchHHHHHHHHHHHh----CcCCcchhhhh
Confidence 4788999999996531 1235789999999999999999853 49999999543
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.43 E-value=1.6e-07 Score=88.74 Aligned_cols=62 Identities=19% Similarity=0.481 Sum_probs=41.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcccccCCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLKIVGPL 247 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~~l~kl 247 (347)
.+.+|+||++...++.. .++..-..+.+|+|+||..||.+|..... .....||+||..+..+
T Consensus 169 kE~eCgICmE~I~eK~~--------~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRL--------ENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccc--------cccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 56889999998765410 11211123458999999999999996421 1124699999987643
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.39 E-value=1.7e-07 Score=67.41 Aligned_cols=43 Identities=37% Similarity=0.888 Sum_probs=23.1
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCP 238 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCP 238 (347)
|+||.+ +... +- ...+|+|||+|..+||++++.........||
T Consensus 1 CpIc~e-~~~~------------~n-~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE------------EN-PPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT------------SS--EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC------------CC-CCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 6432 21 3467999999999999999986533345677
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=2.6e-07 Score=65.56 Aligned_cols=44 Identities=30% Similarity=0.819 Sum_probs=34.6
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
.|+||.+.|... + ...+++|||+|+..||.++.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~------------~--~~~l~~CgH~~C~~C~~~~~~----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEE------------R--RPRLTSCGHIFCEKCLKKLKG----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCC------------C--CeEEcccCCHHHHHHHHhhcC----CCCCCcCCCC
Confidence 499999998321 2 457899999999999999881 3358999985
No 23
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.1e-07 Score=91.84 Aligned_cols=67 Identities=22% Similarity=0.516 Sum_probs=49.9
Q ss_pred CCCCCCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 170 LRSPVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 170 ~rs~ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
++.|+-..++..|+||.+.+...- .++.+++ ....|.|+|+||..||..|.-..++ ++||.|+..+.
T Consensus 215 ~glPtkhl~d~vCaVCg~~~~~s~--~eegvie-----nty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVd 281 (328)
T KOG1734|consen 215 SGLPTKHLSDSVCAVCGQQIDVSV--DEEGVIE-----NTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVD 281 (328)
T ss_pred CCCCCCCCCcchhHhhcchheeec--chhhhhh-----hheeeecccchHHHhhhhheeecCC--CCCchHHHHhh
Confidence 346666688899999998885421 1222221 4567999999999999999987765 59999998765
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.4e-07 Score=89.86 Aligned_cols=50 Identities=32% Similarity=0.763 Sum_probs=39.9
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+.....|.||++.-.. ....||||+||..||..|+.+. ..||+||..+.+
T Consensus 236 ~~a~~kC~LCLe~~~~-----------------pSaTpCGHiFCWsCI~~w~~ek----~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN-----------------PSATPCGHIFCWSCILEWCSEK----AECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCC-----------------CCcCcCcchHHHHHHHHHHccc----cCCCcccccCCC
Confidence 3456789999988632 2357999999999999999743 479999998775
No 25
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.6e-07 Score=79.41 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=46.8
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
++.-++|+||..-+.+.+..+........+.=+|+...|.|.||.+||.+|+.. +..||||.+...
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNKEWV 108 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCccee
Confidence 466778999988776654433222222222226788999999999999999974 348999998743
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=4.6e-07 Score=91.55 Aligned_cols=48 Identities=23% Similarity=0.679 Sum_probs=39.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+||++.|.. .++++|||.||..||..|+.. ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~-----------------PvitpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDV-----------------PVLTSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhC-----------------ccCCCCCCchhHHHHHHHHhC----CCCCCCCCCcccc
Confidence 55789999998843 136899999999999999963 2479999998763
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5e-07 Score=85.33 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=40.4
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+-....|-||++.-.+ .+|-.|||.||.-||-+|+..... .-.||+|+..+..
T Consensus 44 ~~~~FdCNICLd~akd-----------------PVvTlCGHLFCWpClyqWl~~~~~-~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD-----------------PVVTLCGHLFCWPCLYQWLQTRPN-SKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCC-----------------CEEeecccceehHHHHHHHhhcCC-CeeCCcccccccc
Confidence 4567889999987532 235569999999999999975432 3479999998763
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.07 E-value=1.5e-06 Score=88.60 Aligned_cols=70 Identities=24% Similarity=0.499 Sum_probs=48.1
Q ss_pred CcccccccccccccCCCCCCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCC
Q 019024 156 GERFDIADHIDLESLRSPVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEP 235 (347)
Q Consensus 156 ~e~~~~~e~i~~~S~rs~ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dp 235 (347)
.+++.+++..++.+. .+....+..+|+||||-+.. +..-+....|.|.||..||.+|.. .
T Consensus 153 V~~ve~~~s~d~as~-~~~~~tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~ 212 (493)
T KOG0804|consen 153 VDRVEVTESEDGASE-PPTGLTELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------S 212 (493)
T ss_pred EEEEEEEecccCCCC-CCCCcccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------C
Confidence 444444433333322 34455788999999999854 211234456999999999999984 4
Q ss_pred CcccccCCCC
Q 019024 236 PCPLCLKIVG 245 (347)
Q Consensus 236 tCPlCR~~l~ 245 (347)
+||+||.-..
T Consensus 213 scpvcR~~q~ 222 (493)
T KOG0804|consen 213 SCPVCRYCQS 222 (493)
T ss_pred cChhhhhhcC
Confidence 8999998755
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-05 Score=80.29 Aligned_cols=51 Identities=22% Similarity=0.464 Sum_probs=38.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc-CCCCCCcccccCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT-QIHEPPCPLCLKIVGP 246 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~-~k~dptCPlCR~~l~k 246 (347)
+..|+||++.-. +.....|||+||..||-+++... .+.--.||||+..|..
T Consensus 186 ~~~CPICL~~~~-----------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-----------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 678999997742 23344599999999999987654 3333479999999775
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=2.7e-06 Score=83.64 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=38.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
|+++.|+||+...-.. .++.. .+-+|||.||..||+..+... ...||+|+..+.+
T Consensus 1 md~~~CP~Ck~~~y~n-----------p~~kl-~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk 55 (309)
T TIGR00570 1 MDDQGCPRCKTTKYRN-----------PSLKL-MVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCCcCCCCCccC-----------ccccc-ccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccch
Confidence 4678999999753221 13222 223799999999999976433 2489999998765
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.7e-06 Score=75.00 Aligned_cols=45 Identities=29% Similarity=0.719 Sum_probs=37.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
.+...|+||++.|.. | .+|+|||.|+..||..+.. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~---------------p--~~l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE---------------P--VLLPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc---------------C--ccccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 467789999999964 1 6799999999999999886 2358999993
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.99 E-value=2.2e-06 Score=85.30 Aligned_cols=47 Identities=28% Similarity=0.771 Sum_probs=39.7
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|+||.+.|. +..+.||+|.||.-||...|. +.|.||+|+..+.
T Consensus 22 ~lLRC~IC~eyf~-----------------ip~itpCsHtfCSlCIR~~L~----~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-----------------IPMITPCSHTFCSLCIRKFLS----YKPQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-----------------CceeccccchHHHHHHHHHhc----cCCCCCceecccc
Confidence 4467999999984 345679999999999999996 6689999999865
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3e-06 Score=87.50 Aligned_cols=58 Identities=29% Similarity=0.646 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCCccccccCCCCC-c-------ceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMP-T-------AGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~p-v-------vavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||+.++.-.+ ...++. . -.+.||.|+||..||++|.... +-.||+||..+..
T Consensus 570 ~t~dC~ICMt~I~l~~--------~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y---kl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRS--------TGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY---KLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceee--------ccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh---cccCCccCCCCCC
Confidence 4456999998875432 122221 1 2355999999999999999633 3579999998764
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.90 E-value=8.4e-06 Score=63.65 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=36.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||.+.+.+ .++++|||+|-..||++|+.. ...+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~d-----------------PVi~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD-----------------PVILPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS-----------------EEEETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC-----------------ceeCCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCc
Confidence 56789999999864 357899999999999999974 34699999888763
No 35
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.6e-06 Score=79.27 Aligned_cols=54 Identities=37% Similarity=0.655 Sum_probs=40.8
Q ss_pred CCCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHH-hhhccCCCCCCcccccCCCCC
Q 019024 173 PVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ-LTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 173 ~ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~-Wl~~~~k~dptCPlCR~~l~k 246 (347)
+..+..+..|.||++... +...++|||+|+..||.. |+.+. . --||+||..+..
T Consensus 209 pfip~~d~kC~lC~e~~~-----------------~ps~t~CgHlFC~~Cl~~~~t~~k--~-~~CplCRak~~p 263 (271)
T COG5574 209 PFIPLADYKCFLCLEEPE-----------------VPSCTPCGHLFCLSCLLISWTKKK--Y-EFCPLCRAKVYP 263 (271)
T ss_pred CcccccccceeeeecccC-----------------CcccccccchhhHHHHHHHHHhhc--c-ccCchhhhhccc
Confidence 344467889999998752 345689999999999999 88632 1 249999998764
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.3e-06 Score=83.64 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=34.8
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
..|.||. ++... ..+ +.++-.|||+||..||.+|+.... .+-.||+|+-.+
T Consensus 5 A~C~Ic~-d~~p~----------~~~--l~~i~~cGhifh~~cl~qwfe~~P-s~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICI-DGRPN----------DHE--LGPIGTCGHIFHTTCLTQWFEGDP-SNRGCPICQIKL 55 (465)
T ss_pred ceeeEec-cCCcc----------ccc--cccccchhhHHHHHHHHHHHccCC-ccCCCCceeecc
Confidence 4599994 44321 112 344556999999999999997543 224799999443
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.76 E-value=3.8e-06 Score=65.70 Aligned_cols=55 Identities=25% Similarity=0.632 Sum_probs=24.6
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceee--CCCCcccHHHHHHhhhccCCC----CC---CcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHVFHAECLEQLTPKTQIH----EP---PCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHvFH~eCLe~Wl~~~~k~----dp---tCPlCR~~l~ 245 (347)
..|+||...+.+ .++.|.++-- .|++.||..||.+|+....+. .+ .||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~-----------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLD-----------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-T-----------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecC-----------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 469999987642 1234433332 699999999999999754321 12 5999998764
No 38
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.68 E-value=3e-05 Score=56.96 Aligned_cols=31 Identities=35% Similarity=0.753 Sum_probs=25.0
Q ss_pred ceeeCCC-----CcccHHHHHHhhhccCCCCCCccccc
Q 019024 209 AGVLPCR-----HVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 209 vavLpCG-----HvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
..+.||. |.+|..||++|+....+ ..||+|.
T Consensus 14 ~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~--~~C~iC~ 49 (49)
T smart00744 14 PLVSPCRCKGSLKYVHQECLERWINESGN--KTCEICK 49 (49)
T ss_pred eeEeccccCCchhHHHHHHHHHHHHHcCC--CcCCCCC
Confidence 4578985 99999999999976532 4899995
No 39
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4.3e-05 Score=77.61 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=41.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
+..+|+||++.+... ++. -+..|.|||.|-.+||++|+- +++.-.||.|....
T Consensus 3 ~g~tcpiclds~~~~----------g~h--r~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTA----------GNH--RIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeec----------Cce--EEeeecccccccHHHHHHHHh--hhhhhhCcccCChh
Confidence 567899999998642 222 456789999999999999995 55667899998763
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.39 E-value=3.9e-05 Score=82.89 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=40.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
-+...|+||+..+.+. . +..-.+|+|.||++||+.|....+ +||+||..+.+
T Consensus 121 ~~~~~CP~Ci~s~~Dq------------L--~~~~k~c~H~FC~~Ci~sWsR~aq----TCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQ------------L--EESEKHTAHYFCEECVGSWSRCAQ----TCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHH------------h--hccccccccccHHHHhhhhhhhcc----cCchhhhhhhe
Confidence 3556799998877653 1 334568999999999999997553 89999999765
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.31 E-value=0.00012 Score=72.06 Aligned_cols=44 Identities=25% Similarity=0.628 Sum_probs=36.6
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
..|-||-+.|.- ....+|||.||.-||...|. ..|-||+||.+.
T Consensus 26 lrC~IC~~~i~i-----------------p~~TtCgHtFCslCIR~hL~----~qp~CP~Cr~~~ 69 (391)
T COG5432 26 LRCRICDCRISI-----------------PCETTCGHTFCSLCIRRHLG----TQPFCPVCREDP 69 (391)
T ss_pred HHhhhhhheeec-----------------ceecccccchhHHHHHHHhc----CCCCCccccccH
Confidence 469999998842 34568999999999999996 447999999984
No 42
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.28 E-value=8.3e-05 Score=59.87 Aligned_cols=32 Identities=41% Similarity=0.872 Sum_probs=27.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHH
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLE 224 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe 224 (347)
+...|+||.+.|... +.++.||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~---------------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS---------------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc---------------eEEEeCCCeEEeccccc
Confidence 566799999998542 67899999999999986
No 43
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.23 E-value=9.6e-05 Score=74.96 Aligned_cols=54 Identities=30% Similarity=0.768 Sum_probs=41.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+..|+.|.+.+..+. + ....|||.|+||..|+..++..+ .+-+||-||+-..
T Consensus 363 e~~L~Cg~CGe~~Glk~-----------e--~LqALpCsHIfH~rCl~e~L~~n--~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKN-----------E--RLQALPCSHIFHLRCLQEILENN--GTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCc-----------c--cccccchhHHHHHHHHHHHHHhC--CCCCCccHHHHHh
Confidence 35667999999997652 2 34469999999999999999544 3458999996544
No 44
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.19 E-value=0.00014 Score=80.15 Aligned_cols=56 Identities=23% Similarity=0.664 Sum_probs=41.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+.|+||-..|.. ....+|.-+...|.|-||+.||-+|+.... ..+||+||..+.
T Consensus 1468 G~eECaICYsvL~~----------vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDM----------VDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHH----------HhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCccccccc
Confidence 56779999987752 011344555667999999999999997654 358999997654
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00022 Score=71.28 Aligned_cols=59 Identities=25% Similarity=0.680 Sum_probs=41.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhccC---CCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPKTQ---IHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~~~---k~dptCPlCR~~l~ 245 (347)
..+.+|+||++.+.++. ..+. .-++| +|.|.|+..||.+|-...+ +....||+||....
T Consensus 159 s~~k~CGICme~i~ek~---------~~~~-rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA---------ASER-RFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccc---------hhhh-hcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46789999999987652 1111 22344 5999999999999985432 11358999998854
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00018 Score=77.26 Aligned_cols=49 Identities=31% Similarity=0.636 Sum_probs=38.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
...+|++|-.-.. .+++..|||+||.+|+...+..- .-.||.|...|+.
T Consensus 642 ~~LkCs~Cn~R~K-----------------d~vI~kC~H~FC~~Cvq~r~etR---qRKCP~Cn~aFga 690 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-----------------DAVITKCGHVFCEECVQTRYETR---QRKCPKCNAAFGA 690 (698)
T ss_pred hceeCCCccCchh-----------------hHHHHhcchHHHHHHHHHHHHHh---cCCCCCCCCCCCc
Confidence 4567999995543 24567799999999999988643 3489999999984
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00013 Score=73.04 Aligned_cols=49 Identities=27% Similarity=0.527 Sum_probs=38.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+..|+|||..|.. ...+--|+|.||.+||..-+...+ ..||.||+.+.
T Consensus 42 ~~v~c~icl~llk~----------------tmttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKK----------------TMTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHh----------------hcccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhcc
Confidence 45579999999965 233456999999999998887654 48999999865
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00053 Score=67.55 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=36.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|+||+..- -.| +.|+|+|+|+-.||+.-.... + -+|++||.+|.
T Consensus 6 ~~~eC~IC~nt~---------------n~P--v~l~C~HkFCyiCiKGsy~nd-k--~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTG---------------NCP--VNLYCFHKFCYICIKGSYKND-K--KTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccC---------------CcC--ccccccchhhhhhhcchhhcC-C--CCCceecCCCC
Confidence 445699999664 222 569999999999999766422 2 37999999975
No 49
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.00054 Score=74.75 Aligned_cols=55 Identities=36% Similarity=0.757 Sum_probs=42.3
Q ss_pred ccCCCCCCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 168 ESLRSPVGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 168 ~S~rs~ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+..|.+.-++...+|.+|.-.| |+|.|.. -|||.||.+|++ . ....||-|+-.+.
T Consensus 829 ~~lr~sa~i~q~skCs~C~~~L---------------dlP~VhF-~CgHsyHqhC~e---~----~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 829 ETLRTSAQIFQVSKCSACEGTL---------------DLPFVHF-LCGHSYHQHCLE---D----KEDKCPKCLPELR 883 (933)
T ss_pred HHhhcccceeeeeeecccCCcc---------------ccceeee-ecccHHHHHhhc---c----CcccCCccchhhh
Confidence 4456666667788999999888 7777664 499999999999 1 2237999998543
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.70 E-value=0.001 Score=50.44 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=28.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPL 239 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPl 239 (347)
.....|+|.+..|.+ .|.-..|||+|-.+.|.+|+... ....||+
T Consensus 9 ~~~~~CPiT~~~~~~----------------PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED----------------PVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS----------------EEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred EeccCCCCcCChhhC----------------CcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 355689999999864 35556899999999999999432 3458998
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.00097 Score=67.88 Aligned_cols=49 Identities=37% Similarity=0.717 Sum_probs=39.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..+..|.||...|.. .+++||||.|+..||++-+. +...||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~-----------------pv~tpcghs~c~~Cl~r~ld----~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP-----------------PVVTPCGHSFCLECLDRSLD----QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC-----------------CccccccccccHHHHHHHhc----cCCCCccccccccc
Confidence 577889999888742 24569999999999999664 45789999999875
No 52
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0011 Score=66.27 Aligned_cols=48 Identities=31% Similarity=0.763 Sum_probs=37.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
...|.||+.... .+++|||.|. .|..|.+...- +...|||||..+..+
T Consensus 290 gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~----q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 290 GKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRY----QTNNCPICRQPIEEL 338 (349)
T ss_pred CCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHH----hhcCCCccccchHhh
Confidence 578999997653 3679999997 89999987653 223799999998754
No 53
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.53 E-value=0.0011 Score=64.52 Aligned_cols=50 Identities=34% Similarity=0.810 Sum_probs=39.6
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
..|+||.+.+... .+.+.+|+|||..|..|++...-.. .+||+|.+ +..+
T Consensus 159 ~ncPic~e~l~~s-------------~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 159 FNCPICKEYLFLS-------------FEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK-PGDM 208 (276)
T ss_pred CCCchhHHHhccc-------------cccCCccCcccchHHHHHHHHhccC----CCCCcccc-hHHH
Confidence 4499999988652 3367789999999999999887532 69999999 6543
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.41 E-value=0.0011 Score=67.68 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=38.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+.|-||-+.=. .|.+-||||..|..||..|-...+. -+||.||-.|.
T Consensus 368 TFeLCKICaendK-----------------dvkIEPCGHLlCt~CLa~WQ~sd~g--q~CPFCRcEIK 416 (563)
T KOG1785|consen 368 TFELCKICAENDK-----------------DVKIEPCGHLLCTSCLAAWQDSDEG--QTCPFCRCEIK 416 (563)
T ss_pred hHHHHHHhhccCC-----------------CcccccccchHHHHHHHhhcccCCC--CCCCceeeEec
Confidence 4467999987632 3667899999999999999865433 38999998865
No 55
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0034 Score=60.77 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=42.7
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+||.+.|+. -+|.+++-+|||||..+|.++.+. .|-.||+|-.++..
T Consensus 220 ~ryiCpvtrd~LtN-------------t~~ca~Lr~sg~Vv~~ecvEklir----~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTN-------------TTPCAVLRPSGHVVTKECVEKLIR----KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcC-------------ccceEEeccCCcEeeHHHHHHhcc----ccccccCCCCcCcc
Confidence 55789999999965 455667779999999999999886 45689999987653
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0038 Score=61.05 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=40.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
.+..+|++|.+.=+ +| -..++|||+||--||..-....- ..+||.|......|.
T Consensus 237 t~~~~C~~Cg~~Pt---------------iP-~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---------------IP-HVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCC---------------CC-eeeccccceeehhhhhhhhcchh--hcccCccCCCCcchh
Confidence 57789999997732 22 24578999999999997664321 258999999887655
No 57
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.0019 Score=70.88 Aligned_cols=37 Identities=32% Similarity=0.649 Sum_probs=29.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP 228 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~ 228 (347)
..++.|.+|...|..+ ...+.+|||.||++||.+-+.
T Consensus 815 ep~d~C~~C~~~ll~~---------------pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK---------------PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC---------------cceeeeccchHHHHHHHHHHH
Confidence 3567899999998654 346789999999999987653
No 58
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.93 E-value=0.0026 Score=49.95 Aligned_cols=45 Identities=22% Similarity=0.648 Sum_probs=22.8
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|.+|...|.+ .|.+..|.|+|+..||..-+. ..||+|..+.-
T Consensus 7 lLrCs~C~~~l~~----------------pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKE----------------PVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-----------------B---SSS--B-TTTGGGGTT------TB-SSS--B-S
T ss_pred hcCCcHHHHHhcC----------------CceeccCccHHHHHHhHHhcC------CCCCCcCChHH
Confidence 3469999999854 345678999999999987553 25999998853
No 59
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0084 Score=57.57 Aligned_cols=52 Identities=29% Similarity=0.639 Sum_probs=39.7
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC----CCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ----IHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~----k~dptCPlCR~~l~k 246 (347)
-.|.+|...|.++ | ...|.|=|+||..||+.|-.... .....||-|...|.+
T Consensus 51 pNC~LC~t~La~g------------d---t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASG------------D---TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccC------------c---ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 3599999998653 4 34688999999999999975432 123479999999875
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.62 E-value=0.0088 Score=57.08 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.....|||+...|... ...|++.+|||||-..||++.- .+..||+|..++..
T Consensus 111 ~~~~~CPvt~~~~~~~-------------~~fv~l~~cG~V~s~~alke~k-----~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGK-------------HKFVYLRPCGCVFSEKALKELK-----KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCcccCCc-------------eeEEEEcCCCCEeeHHHHHhhc-----ccccccccCCcccc
Confidence 4567899999998542 3367778999999999999873 12379999999763
No 61
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.45 E-value=0.0076 Score=59.88 Aligned_cols=45 Identities=29% Similarity=0.603 Sum_probs=35.6
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
..|++|..+|... +..--|||.|+.+||+..|-. .|..||.|-..
T Consensus 275 LkCplc~~Llrnp----------------~kT~cC~~~fc~eci~~al~d---sDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNP----------------MKTPCCGHTFCDECIGTALLD---SDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCc----------------ccCccccchHHHHHHhhhhhh---ccccCCCcccc
Confidence 6899999998652 233469999999999988864 45689999773
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.28 E-value=0.0065 Score=57.36 Aligned_cols=46 Identities=28% Similarity=0.524 Sum_probs=35.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|.||.++|.. | ++..|||.|+..|.-.-.. ..+.|-+|.+...
T Consensus 196 PF~C~iCKkdy~s---------------p--vvt~CGH~FC~~Cai~~y~----kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---------------P--VVTECGHSFCSLCAIRKYQ----KGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---------------h--hhhhcchhHHHHHHHHHhc----cCCcceecchhhc
Confidence 3589999999954 2 3457999999999886654 3368999998754
No 63
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.24 E-value=0.0084 Score=60.66 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=38.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+||...+.+. + ....|||.|+..||..|+.. .+.||.|+..+..
T Consensus 20 ~~l~C~~C~~vl~~p---------------~-~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP---------------V-QTTTCGHRFCAGCLLESLSN----HQKCPVCRQELTQ 68 (391)
T ss_pred ccccCccccccccCC---------------C-CCCCCCCcccccccchhhcc----CcCCcccccccch
Confidence 457899999998642 1 12579999999999999974 4689999888664
No 64
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.24 E-value=0.011 Score=68.03 Aligned_cols=58 Identities=26% Similarity=0.526 Sum_probs=37.9
Q ss_pred CCCCCCccccccccc-hhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCC------CCCCcccccCCCCC
Q 019024 174 VGPVAGQKCGVCSKL-LSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQI------HEPPCPLCLKIVGP 246 (347)
Q Consensus 174 ss~~d~~~C~ICle~-L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k------~dptCPlCR~~l~k 246 (347)
+.+-.++.|.||... |.. - ....|.|+|+||.+|....+...-. .--.||+|...+..
T Consensus 3481 tkQD~DDmCmICFTE~L~A--------------A-P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSA--------------A-PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hhcccCceEEEEehhhhCC--------------C-cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 344456778888733 321 1 2356899999999999876642110 11379999998764
No 65
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.23 E-value=0.0066 Score=60.21 Aligned_cols=57 Identities=21% Similarity=0.492 Sum_probs=41.6
Q ss_pred CCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc-------------------CCCCC
Q 019024 175 GPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT-------------------QIHEP 235 (347)
Q Consensus 175 s~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~-------------------~k~dp 235 (347)
+......|.|||--|..+ + ...+.+|-|.||..||.++|... .+...
T Consensus 111 nn~p~gqCvICLygfa~~------------~--~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~ea 176 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASS------------P--AFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEA 176 (368)
T ss_pred CCCCCCceEEEEEeecCC------------C--ceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhh
Confidence 345566799999888653 2 56778999999999998766431 11234
Q ss_pred CcccccCCCC
Q 019024 236 PCPLCLKIVG 245 (347)
Q Consensus 236 tCPlCR~~l~ 245 (347)
.||+||..|.
T Consensus 177 vcpVcre~i~ 186 (368)
T KOG4445|consen 177 VCPVCRERIK 186 (368)
T ss_pred hhhHhhhhcc
Confidence 7999999865
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.98 E-value=0.011 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=25.4
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCC------CcccHHHHHHhh
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR------HVFHAECLEQLT 227 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG------HvFH~eCLe~Wl 227 (347)
...|.||++.+... + .+| .++|| |+||++|+++|.
T Consensus 26 ~~EC~IC~~~I~~~------------~-GvV-~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNN------------D-GVV-YVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcC------------C-CEE-EEecCCeehHHHHHHHHHHHHHH
Confidence 45699999887541 1 133 45566 899999999995
No 67
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.0079 Score=46.26 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=31.2
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHH-HHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECL-EQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCL-e~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+.|.||.+.-.+ .++.-|||. ++-+|- +.|.. ....||+||.++..
T Consensus 8 dECTICye~pvd-----------------sVlYtCGHMCmCy~Cg~rl~~~----~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD-----------------SVLYTCGHMCMCYACGLRLKKA----LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch-----------------HHHHHcchHHhHHHHHHHHHHc----cCCcCcchhhHHHH
Confidence 679999965321 134579997 677885 44543 23589999998653
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.22 E-value=0.021 Score=54.64 Aligned_cols=32 Identities=41% Similarity=0.845 Sum_probs=25.6
Q ss_pred cceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 208 vvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...+..|+||||..|...-.. +.||+|++.+.
T Consensus 17 ~f~LTaC~HvfC~~C~k~~~~------~~C~lCkk~ir 48 (233)
T KOG4739|consen 17 PFFLTACRHVFCEPCLKASSP------DVCPLCKKSIR 48 (233)
T ss_pred ceeeeechhhhhhhhcccCCc------cccccccceee
Confidence 456789999999999885443 38999999954
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.02 Score=57.66 Aligned_cols=45 Identities=31% Similarity=0.627 Sum_probs=32.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...+.|.||++... .++.+||||+-+ |..-.. +.+.||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~-----------------~~~fvpcGh~cc--ct~cs~-----~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK-----------------SAVFVPCGHVCC--CTLCSK-----HLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCcc-----------------ceeeecCCcEEE--chHHHh-----hCCCCchhHHHHH
Confidence 35567999997643 246789999966 665322 4578999998764
No 70
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.024 Score=56.05 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=38.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
....|.||.+.|.. .++-.|||.|+..|.-.-+.. .+.|+||...+.-+.
T Consensus 240 ~Pf~c~icr~~f~~-----------------pVvt~c~h~fc~~ca~~~~qk----~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 240 LPFKCFICRKYFYR-----------------PVVTKCGHYFCEVCALKPYQK----GEKCYVCSQQTHGSF 289 (313)
T ss_pred CCcccccccccccc-----------------chhhcCCceeehhhhcccccc----CCcceeccccccccc
Confidence 44679999999854 134679999999998866642 368999999876544
No 71
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.017 Score=56.81 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=50.2
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc------CCCCCc
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE------ESSSVS 254 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~------~~~a~~ 254 (347)
.|++|...--. +-++ +..+-+|||..+..|.+..+..+. ..||.|+..+.+-. +.+.+.
T Consensus 2 ~Cp~CKt~~Y~-----------np~l-k~~in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~nfr~q~fED~~ve 66 (300)
T KOG3800|consen 2 ACPKCKTDRYL-----------NPDL-KLMINECGHRLCESCVDRIFSLGP---AQCPECMVILRKNNFRVQTFEDPTVE 66 (300)
T ss_pred CCcccccceec-----------Cccc-eeeeccccchHHHHHHHHHHhcCC---CCCCcccchhhhcccchhhcchhHHH
Confidence 59999854311 1132 233448999999999999997543 48999999876532 222222
Q ss_pred chhhhhhhhhccccceEEecCCCCC
Q 019024 255 EPLQMVLRSVQRSKGIMISEADGDH 279 (347)
Q Consensus 255 ~ele~k~rs~rr~rn~vvd~~dg~~ 279 (347)
.+.++..+ ..+..|+-.+.++|+.
T Consensus 67 kEv~iRrr-i~~~~nk~~eeF~~~L 90 (300)
T KOG3800|consen 67 KEVDIRRR-ILRIFNKKEEEFTGSL 90 (300)
T ss_pred HHHHHHHH-HHHHhccchhhhhhhH
Confidence 23333222 2445666666666654
No 72
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.91 E-value=0.014 Score=58.15 Aligned_cols=50 Identities=20% Similarity=0.539 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....+|.+|...|.+. ..+.-|=|.||..||-+.+... -.||+|...+.+
T Consensus 13 n~~itC~LC~GYliDA----------------TTI~eCLHTFCkSCivk~l~~~----~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA----------------TTITECLHTFCKSCIVKYLEES----KYCPTCDIVIHK 62 (331)
T ss_pred ccceehhhccceeecc----------------hhHHHHHHHHHHHHHHHHHHHh----ccCCccceeccC
Confidence 4677899999998642 2345699999999999999763 389999988764
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.047 Score=52.18 Aligned_cols=53 Identities=25% Similarity=0.557 Sum_probs=39.5
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|.||-++|... .+ ....++|.|||.|+..|+...+... .-.||.||....
T Consensus 3 ~~~c~~c~~~~s~~---------~~--~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 3 FPECEICNEDYSSE---------DG--DHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETTE 55 (296)
T ss_pred CCceeecCcccccc---------Cc--ccCCcccccCceehHhHHHHHhcCc---eeeccCCCCccc
Confidence 35699999999642 11 2255788999999999999777532 247999999953
No 74
>PHA02862 5L protein; Provisional
Probab=93.78 E-value=0.041 Score=49.59 Aligned_cols=47 Identities=19% Similarity=0.502 Sum_probs=34.0
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCC-----CcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-----HVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-----HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+.|-||.+.-.+ .+-||. -.-|.+||.+|+...+ .-.|++|+..+.
T Consensus 2 ~diCWIC~~~~~e------------------~~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDE------------------RNNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCC------------------CcccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 3579999976321 124665 3679999999996553 358999999865
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.61 E-value=0.03 Score=59.28 Aligned_cols=52 Identities=19% Similarity=0.494 Sum_probs=37.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc-cCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK-TQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~-~~k~dptCPlCR~~l~ 245 (347)
.....|++|-+.-.+ ..+-.|.|+||.-||..++.. ....+.+||+|-..+.
T Consensus 534 k~~~~C~lc~d~aed-----------------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED-----------------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh-----------------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456789999977532 235679999999999877643 1123469999998865
No 76
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.54 E-value=0.04 Score=50.13 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=11.0
Q ss_pred CCCcccccCCCCCC
Q 019024 234 EPPCPLCLKIVGPL 247 (347)
Q Consensus 234 dptCPlCR~~l~kl 247 (347)
...||+||..|.-.
T Consensus 80 ~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 80 ELACPLCRGEVKGW 93 (162)
T ss_pred cccCccccCceece
Confidence 46899999997643
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.0069 Score=61.73 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.....|.||.+.|.+.- + ..-.+.|||.||.+||.+|+.... .||.|+..+.+
T Consensus 194 slv~sl~I~~~slK~~y-----------~--k~~~~~~g~~~~~~kL~k~L~~~~----kl~~~~rel~~ 246 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNY-----------D--KISAIVCGHIYHHGKLSKWLATKR----KLPSCRRELPK 246 (465)
T ss_pred HHHhhhHhhHHHHHHHH-----------H--HHHHHhhcccchhhHHHHHHHHHH----HhHHHHhhhhh
Confidence 45677999999997620 1 344578999999999999998643 69999998754
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.30 E-value=0.05 Score=55.17 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=38.4
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+.+.+.|-||.+.++. ++++||+|..+.-|..+.-.--. .-.||+|+....
T Consensus 58 DEen~~C~ICA~~~TY-----------------s~~~PC~H~~CH~Ca~RlRALY~--~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTTY-----------------SARYPCGHQICHACAVRLRALYM--QKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCceE-----------------EEeccCCchHHHHHHHHHHHHHh--ccCCCccccccc
Confidence 4678899999988864 57899999999999865432211 137999998754
No 79
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.27 E-value=0.071 Score=48.59 Aligned_cols=49 Identities=20% Similarity=0.501 Sum_probs=34.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCC-----cccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRH-----VFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGH-----vFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+..|-||.+... + . .-||.- .-|.+||++|+... ....|++|...+.
T Consensus 6 ~~~~~CRIC~~~~~--------------~--~--~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYD--------------V--V--TNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCC--------------C--c--cCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCeEE
Confidence 35667999986631 1 1 135543 56999999999865 4568999999865
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.77 E-value=0.047 Score=41.73 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=25.8
Q ss_pred cceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 208 vvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+-++|+|||+....|.+-+- + ..||+|...+..
T Consensus 19 ~~~~~pCgH~I~~~~f~~~r-----Y-ngCPfC~~~~~~ 51 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGER-----Y-NGCPFCGTPFEF 51 (55)
T ss_pred ccccccccceeeccccChhh-----c-cCCCCCCCcccC
Confidence 34679999999999987443 3 389999998764
No 81
>PHA03096 p28-like protein; Provisional
Probab=92.07 E-value=0.089 Score=51.62 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=34.8
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
-.|+||++....+.. . +. .-.+| -|.|+|+..|+..|..... ..-+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~-------~--~~-~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYI-------I--KK-YYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhcc-------c--cc-cccccccCCcHHHHHHHHHHHHhhh-hcccCccccch
Confidence 679999998876521 1 11 12344 5999999999999986543 23355555544
No 82
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.01 E-value=0.14 Score=38.09 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=21.4
Q ss_pred ccccccchhccCCCCccccccCCCCCcceee--CCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
|++|.+.+... + ...+ +||+.++..|....+... +..||-||.++
T Consensus 1 cp~C~e~~d~~------------d---~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET------------D---KDFYPCECGFQICRFCYHDILENE---GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC------------C---TT--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccC------------C---CccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCCC
Confidence 78999888432 2 1233 589999999998887532 35899999864
No 83
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.75 E-value=0.11 Score=52.61 Aligned_cols=135 Identities=18% Similarity=0.244 Sum_probs=66.8
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCcCC--CCC-cc
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLEES--SSV-SE 255 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~~~--~a~-~~ 255 (347)
++-|++|.+.+.-. ..+ ..--+||-..|..|-...-...+ ..||-||+.+.. +.. +.+ .+
T Consensus 14 ed~cplcie~mdit---------dkn----f~pc~cgy~ic~fc~~~irq~ln---grcpacrr~y~d-env~~~~~s~e 76 (480)
T COG5175 14 EDYCPLCIEPMDIT---------DKN----FFPCPCGYQICQFCYNNIRQNLN---GRCPACRRKYDD-ENVRYVTLSPE 76 (480)
T ss_pred cccCcccccccccc---------cCC----cccCCcccHHHHHHHHHHHhhcc---CCChHhhhhccc-cceeEEecCHH
Confidence 34499999987321 111 12247888888888776554433 489999998763 111 111 12
Q ss_pred h--hhhhhhhhcc--ccceEEec--CCCCCCCcccchhhhhc-cCCCCCCCCCCCcchhhhhccccCCC-Ccccccceee
Q 019024 256 P--LQMVLRSVQR--SKGIMISE--ADGDHSNTEASDHIRNK-LGRGPRWSDSGSSLKNRLKRHFSFKA-SKDMFSTKVF 327 (347)
Q Consensus 256 e--le~k~rs~rr--~rn~vvd~--~dg~~~n~~~~~~~k~~-~~~k~p~~~~~s~~kpflkrhFsf~~-~~~~~~~~~~ 327 (347)
| |+++-++.|+ -+.+.+.+ ..+..+|.-++-. +-+ .-|-.|+. +.--..|-||+|==||- || |--+ |.
T Consensus 77 e~kmel~rk~erk~rekerke~e~~nrkhlsniRVvQK-NLvYVigi~pkv-a~Ee~~~vLk~~eyFGQyGk-I~KI-vv 152 (480)
T COG5175 77 ELKMELARKEERKMREKERKEAEGQNRKHLSNIRVVQK-NLVYVIGIPPKV-ADEEVAPVLKRHEYFGQYGK-IKKI-VV 152 (480)
T ss_pred HHHHHHHhhhhhhccHHHHhhhhcccccccccceeeec-ceeEEecCCCCC-Ccccccccccchhhhhhccc-eeEE-Ee
Confidence 2 2222222222 22232322 2233444322211 111 11223332 22334678999998998 54 3333 55
Q ss_pred eccCCCC
Q 019024 328 HRMGSSS 334 (347)
Q Consensus 328 ~~~g~~~ 334 (347)
||+-++.
T Consensus 153 Nkkt~s~ 159 (480)
T COG5175 153 NKKTSSL 159 (480)
T ss_pred ccccccc
Confidence 6766543
No 84
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.14 Score=47.95 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=27.2
Q ss_pred eeCCCCcccHHHHHHhhhccCCC-------CCCcccccCCCC
Q 019024 211 VLPCRHVFHAECLEQLTPKTQIH-------EPPCPLCLKIVG 245 (347)
Q Consensus 211 vLpCGHvFH~eCLe~Wl~~~~k~-------dptCPlCR~~l~ 245 (347)
-..||--||.-||..|+...-.. -..||.|..++.
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 46799999999999999653211 147999999875
No 85
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.30 E-value=0.075 Score=38.68 Aligned_cols=42 Identities=26% Similarity=0.699 Sum_probs=26.0
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCC-----cccHHHHHHhhhccCCCCCCcccc
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRH-----VFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGH-----vFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
|-||++.-.+. ...+.||+- ..|.+||++|+.... ...|++|
T Consensus 1 CrIC~~~~~~~---------------~~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED---------------EPLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS---------------S-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCC---------------CceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 67888775432 123567653 579999999998643 3479998
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.25 E-value=0.11 Score=56.29 Aligned_cols=46 Identities=33% Similarity=0.801 Sum_probs=36.0
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|.||++ + + ...+.+|||.|+.+|+.+-+...+.. .||+|+..+.
T Consensus 455 ~~c~ic~~-~---------------~--~~~it~c~h~~c~~c~~~~i~~~~~~--~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-L---------------D--SFFITRCGHDFCVECLKKSIQQSENA--PCPLCRNVLK 500 (674)
T ss_pred cccccccc-c---------------c--cceeecccchHHHHHHHhccccccCC--CCcHHHHHHH
Confidence 78999998 3 2 23467899999999999888655433 7999998864
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.062 Score=53.72 Aligned_cols=33 Identities=39% Similarity=0.926 Sum_probs=24.9
Q ss_pred eeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 210 avLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
+++||.||||.+|... .. +..||+|...+.+++
T Consensus 105 RmIPCkHvFCl~CAr~---~~---dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARS---DS---DKICPLCDDRVQRIE 137 (389)
T ss_pred cccccchhhhhhhhhc---Cc---cccCcCcccHHHHHH
Confidence 5689999999999872 22 238999988876543
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.05 E-value=0.11 Score=51.41 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=36.4
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCC--CCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPC--RHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpC--GHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
..+...|+||.+.|.- .+..| ||.-+..|-.+-. ..||.|+..+++.
T Consensus 45 ~~~lleCPvC~~~l~~------------------Pi~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSP------------------PIFQCDNGHLACSSCRTKVS-------NKCPTCRLPIGNI 93 (299)
T ss_pred chhhccCchhhccCcc------------------cceecCCCcEehhhhhhhhc-------ccCCccccccccH
Confidence 4678899999999842 24556 8999999986433 2799999999964
No 89
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=0.074 Score=52.79 Aligned_cols=44 Identities=23% Similarity=0.655 Sum_probs=30.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|.||.+.-. | -..|+|||. -+.+|-..+- .|||||+.+.+
T Consensus 299 ~~~LC~ICmDaP~--------------D---CvfLeCGHmVtCt~CGkrm~--------eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPR--------------D---CVFLECGHMVTCTKCGKRMN--------ECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCc--------------c---eEEeecCcEEeehhhccccc--------cCchHHHHHHH
Confidence 3678999996632 2 357899996 4666655332 79999987654
No 90
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=89.10 E-value=0.23 Score=55.04 Aligned_cols=54 Identities=22% Similarity=0.625 Sum_probs=39.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCC---CCCcccccCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIH---EPPCPLCLKIV 244 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~---dptCPlCR~~l 244 (347)
....|.||.+.+.... ++..--.|=||||..||..|-...++. .-.||.|....
T Consensus 190 ~~yeCmIC~e~I~~t~-------------~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTA-------------PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccC-------------CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 5678999999986532 233344588999999999998765443 24699999543
No 91
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=0.26 Score=53.44 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=33.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.+...|.||+..|.... - ..+.|.|||+.+..|++... +-+|| |.++
T Consensus 9 ~~~l~c~ic~n~f~~~~-----------~--~Pvsl~cghtic~~c~~~ly------n~scp-~~~D 55 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQR-----------L--EPVSLQCGHTICGHCVQLLY------NASCP-TKRD 55 (861)
T ss_pred HHHhhchHHHHHHHHHh-----------c--CcccccccchHHHHHHHhHh------hccCC-CCcc
Confidence 35567999987775421 1 23468899999999999654 34899 7776
No 92
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.59 E-value=0.2 Score=46.28 Aligned_cols=29 Identities=34% Similarity=0.754 Sum_probs=24.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccH
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHA 220 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~ 220 (347)
+...|.||+|+|.. +| .++.|||=.+||+
T Consensus 176 dkGECvICLEdL~~------------Gd--tIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEA------------GD--TIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccC------------CC--ceeccceEEEeec
Confidence 55789999999954 35 7899999999996
No 93
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=85.53 E-value=0.32 Score=52.04 Aligned_cols=28 Identities=39% Similarity=0.899 Sum_probs=21.4
Q ss_pred cceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 208 TAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 208 vvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
+.....||++||..|+.. ..+.||.|-+
T Consensus 531 ~~rC~~C~avfH~~C~~r-------~s~~CPrC~R 558 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRR-------KSPCCPRCER 558 (580)
T ss_pred ceeHHHHHHHHHHHHHhc-------cCCCCCchHH
Confidence 456678999999999983 2235999965
No 94
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.34 E-value=0.43 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=21.4
Q ss_pred eeeCCCCcccHHHHHHhhhccCCCCCCccc
Q 019024 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPL 239 (347)
Q Consensus 210 avLpCGHvFH~eCLe~Wl~~~~k~dptCPl 239 (347)
..+.||||.|..|...|+...+ .||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd----~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGD----VCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCC----cCCC
Confidence 4578999999999999998553 6873
No 95
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=0.43 Score=49.31 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=36.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc----CCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT----QIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~----~k~dptCPlCR~~ 243 (347)
....|.||.+..... + -...|||+|||+..|+..++... ....-.||-|.-+
T Consensus 183 slf~C~ICf~e~~G~------------~--c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQ------------H--CFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCc------------c--eeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 456799999876431 2 45679999999999999887432 1122467766554
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=0.35 Score=45.41 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=22.4
Q ss_pred cceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 208 TAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 208 vvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.|.+|||.|+ ++..|-+. + ..||+|+....
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSPKT 200 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcChhh
Confidence 4678999876 77888764 2 37999997643
No 97
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.07 E-value=0.34 Score=53.39 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=33.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.++.|..|.+..-.+ +...-.+.++.|||+||..|+..-.... .|-+|..-
T Consensus 783 ~e~rc~~c~~~~l~~----------~~~~~~~~v~~c~h~yhk~c~~~~~~~~-----~~~~~~~~ 833 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPS----------GAAFDSVVVFHCGHMYHKECLMMESLRN-----ACNIESGK 833 (846)
T ss_pred ehhhhhhhccccccc----------CcccceeeEEEccchhhhcccccHHHhc-----ccChhhce
Confidence 455899999876321 2123367889999999999998655422 26666543
No 98
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.72 E-value=0.85 Score=32.72 Aligned_cols=26 Identities=27% Similarity=0.850 Sum_probs=15.6
Q ss_pred CCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 213 PCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
.|+=.+|..|++.++... .++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~--~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHR--SNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT---SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcC--CCCCCcCC
Confidence 477789999999999644 23479988
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=82.91 E-value=0.54 Score=54.28 Aligned_cols=49 Identities=27% Similarity=0.599 Sum_probs=38.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|.||++.+... -.+..|||.|+..|++.|+. +...||+|....+.
T Consensus 1152 ~~~~c~ic~dil~~~----------------~~I~~cgh~~c~~c~~~~l~----~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQ----------------GGIAGCGHEPCCRCDELWLY----ASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhc----------------CCeeeechhHhhhHHHHHHH----HhccCcchhhhhhh
Confidence 334899999998742 24567999999999999996 44589999977554
No 100
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=0.94 Score=46.51 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=36.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
....+|||=.+.-.+ |-| ...|.||||...+-|.+...... ...-||.|=..
T Consensus 332 HSvF~CPVlKeqtsd-------------eNP-Pm~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSD-------------ENP-PMMLICGHVISKDALNRLSKNGS-QSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccC-------------CCC-CeeeeccceecHHHHHHHhhCCC-eeeeCCCCCcc
Confidence 345679997655433 333 35799999999999999886443 34679999654
No 101
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.29 E-value=1.2 Score=45.10 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 175 GPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 175 s~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.+.+...|+||++.-.. + .++-.-|=|||-.|+.+.+.. + ..||+=..+
T Consensus 296 l~~~~~~CpvClk~r~N-------------p---tvl~vSGyVfCY~Ci~~Yv~~---~-~~CPVT~~p 344 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQN-------------P---TVLEVSGYVFCYPCIFSYVVN---Y-GHCPVTGYP 344 (357)
T ss_pred CCCccccChhHHhccCC-------------C---ceEEecceEEeHHHHHHHHHh---c-CCCCccCCc
Confidence 34688899999987533 2 233446999999999999963 2 389986554
No 102
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=80.02 E-value=0.55 Score=48.29 Aligned_cols=67 Identities=18% Similarity=0.452 Sum_probs=0.0
Q ss_pred CccccccccchhccCCCCc--cccccCCCCCcceeeCCCCcccHHHHHHhhhcc-----CCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSS--HRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT-----QIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s--~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~-----~k~dptCPlCR~~l~ 245 (347)
.-+|+||+..=..-..|-. -.+......|.-+.-||||+--.....-|-... +..++.||.|...|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 5679999965322223311 122222234566778999999999998886432 123468999998876
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=79.49 E-value=0.37 Score=46.95 Aligned_cols=88 Identities=23% Similarity=0.450 Sum_probs=50.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeC-CCCcccHHHHHHhhhccCCCCCCcc--cccCCCCCCc-----
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPCP--LCLKIVGPLE----- 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp-CGHvFH~eCLe~Wl~~~~k~dptCP--lCR~~l~kl~----- 248 (347)
+.+..||||..+--.. -|+ ++.+-| |=|.+|..|.++.+.... ..|| -|.+-+.+..
T Consensus 8 ~~d~~CPvCksDrYLn-----------Pdi-k~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILRK~kf~~qt 72 (314)
T COG5220 8 MEDRRCPVCKSDRYLN-----------PDI-KILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILRKIKFIKQT 72 (314)
T ss_pred hhcccCCccccccccC-----------CCe-EEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHHHhcccccc
Confidence 4566899999664221 131 122235 999999999999998654 3799 8887765432
Q ss_pred -CCCCCcchhhhhhhhhccccceEEecCCCCCC
Q 019024 249 -ESSSVSEPLQMVLRSVQRSKGIMISEADGDHS 280 (347)
Q Consensus 249 -~~~a~~~ele~k~rs~rr~rn~vvd~~dg~~~ 280 (347)
+...+..+.++..+-. +.-|.-.+.++|+..
T Consensus 73 FeD~~vEkEvdvRkr~~-r~Fnk~~~eF~gdl~ 104 (314)
T COG5220 73 FEDITVEKEVDVRKRLL-RAFNKEEEEFGGDLA 104 (314)
T ss_pred cchhhhhhhhhHHHHHH-HHhccchhhhCccHH
Confidence 2222333333333322 223444556777653
No 104
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.59 E-value=1.5 Score=45.02 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=37.3
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..++..|+||-.-= . .++.-||+|.=|..||.+-+...+ .|-.|+..+..
T Consensus 419 ~sEd~lCpICyA~p----------------i-~Avf~PC~H~SC~~CI~qHlmN~k----~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGP----------------I-NAVFAPCSHRSCYGCITQHLMNCK----RCFFCKTTVID 468 (489)
T ss_pred CcccccCcceeccc----------------c-hhhccCCCCchHHHHHHHHHhcCC----eeeEecceeee
Confidence 36788999997331 0 234569999999999999887442 69999888663
No 105
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=76.78 E-value=1.5 Score=40.75 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=30.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
-+..|-||... +.|.+-....++.-..|+-+||.+|..+ ..||-|..
T Consensus 151 kGfiCe~C~~~---------~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSD---------DIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCC---------CCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 45678888643 1122222223556678999999999882 26999965
No 107
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.41 E-value=2.1 Score=43.38 Aligned_cols=69 Identities=19% Similarity=0.437 Sum_probs=41.5
Q ss_pred CCccccccccchhccCCCCcc--ccccCCCCCcceeeCCCCcccHHHHHHhhhc-----cCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSH--RIMRGGDMPTAGVLPCRHVFHAECLEQLTPK-----TQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~--~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~-----~~k~dptCPlCR~~l~k 246 (347)
....|++|+..=..-..|-.. ........|.-+.-||||+--..=..-|-.. ....++.||.|...+.-
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 456799998653222234221 1111112344566799999888877778533 12356899999988763
No 108
>PLN02400 cellulose synthase
Probab=74.67 E-value=5.1 Score=46.03 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 175 GPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 175 s~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
.....++|.||.+++... ..|| +-|+.-.|+=--|..|.+- - .+..+..||-|+..+....
T Consensus 32 ~~~~gqiCqICGD~VG~t---------~dGe-~FVAC~eCaFPVCRpCYEY-E--RkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVT---------ETGD-VFVACNECAFPVCRPCYEY-E--RKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred cccCCceeeecccccCcC---------CCCC-EEEEEccCCCccccchhhe-e--cccCCccCcccCCcccccc
Confidence 346778999999998542 3455 3556667777799999972 2 2223358999998876544
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.52 E-value=2.2 Score=43.41 Aligned_cols=56 Identities=23% Similarity=0.454 Sum_probs=35.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcc--cccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCP--LCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCP--lCR~~l~ 245 (347)
....+|.||...+... +. ...++.|+|.|+.+|+.+.+.... ...+.|| -|...+.
T Consensus 144 ~~~~~C~iC~~e~~~~------------~~-~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEA------------ED-MFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccccCccCccccccH------------hh-hHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 4578899999444221 11 122678999999999998886432 2346775 3555443
No 110
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=70.97 E-value=3.6 Score=36.88 Aligned_cols=55 Identities=18% Similarity=0.471 Sum_probs=39.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|.||.|.-.+. +.+.++| -||=..+.-|-.+...... ..|.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee------~FLKPne-------CCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEE------RFLKPNE-------CCGYSICNACYANLWKFCN-LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchh------hcCCccc-------ccchHHHHHHHHHHHHHcc-cCCCCCcccccccc
Confidence 567899999887653 3444444 3998888888766443443 55899999988764
No 111
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.70 E-value=3.5 Score=31.48 Aligned_cols=35 Identities=31% Similarity=0.675 Sum_probs=26.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHH
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ 225 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~ 225 (347)
....|.+|.+.|+.+ +| +|+--.||=.||.+|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~-----------dD--iVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDG-----------DD--IVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCC-----------CC--EEECCCCCCcccHHHHhh
Confidence 456799999999642 23 444556999999999874
No 112
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=70.51 E-value=2.9 Score=42.51 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=23.8
Q ss_pred CCCcccHHHHHHhhhccCC---------CCCCcccccCCCCC
Q 019024 214 CRHVFHAECLEQLTPKTQI---------HEPPCPLCLKIVGP 246 (347)
Q Consensus 214 CGHvFH~eCLe~Wl~~~~k---------~dptCPlCR~~l~k 246 (347)
|.-..|.+|+-+|+...+. ..-+||+||+.+--
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5555688999999965431 12489999998753
No 113
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=68.77 E-value=6.2 Score=32.42 Aligned_cols=60 Identities=18% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
....+.|.||.+.+... ..|+ +-|+.--|+--.+..|.+-=..... -.||-|+..+....
T Consensus 6 ~~~~qiCqiCGD~VGl~---------~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLT---------ENGE-VFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYKRHK 65 (80)
T ss_dssp --SS-B-SSS--B--B----------SSSS-B--S-SSS-----HHHHHHHHHTS----SB-TTT--B----T
T ss_pred hcCCcccccccCccccC---------CCCC-EEEEEcccCCccchhHHHHHhhcCc---ccccccCCCccccc
Confidence 35778999999998543 3444 3456667888889999985554433 48999997766443
No 114
>PLN02436 cellulose synthase A
Probab=66.90 E-value=9.1 Score=44.08 Aligned_cols=59 Identities=20% Similarity=0.475 Sum_probs=40.8
Q ss_pred CCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 175 GPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 175 s~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.....++|.||.+++... ..|| +-||.-.||--.|..|.+-=..+ .+..||-|+..+..
T Consensus 32 ~~~~~~iCqICGD~Vg~t---------~dGe-~FVACn~C~fpvCr~Cyeyer~e---g~~~Cpqckt~Y~r 90 (1094)
T PLN02436 32 QELSGQTCQICGDEIELT---------VDGE-PFVACNECAFPVCRPCYEYERRE---GNQACPQCKTRYKR 90 (1094)
T ss_pred cccCCccccccccccCcC---------CCCC-EEEeeccCCCccccchhhhhhhc---CCccCcccCCchhh
Confidence 346778999999998542 3445 34565667777999999633322 23489999988763
No 115
>PLN02189 cellulose synthase
Probab=65.74 E-value=10 Score=43.59 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=40.7
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
....+.|.||.+.+... ..|+ +-|+.-.||--.|..|.+-=..+ .+..||-|+..+...
T Consensus 31 ~~~~~~C~iCgd~vg~~---------~~g~-~fvaC~~C~fpvCr~Cyeyer~e---g~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLT---------VDGD-LFVACNECGFPVCRPCYEYERRE---GTQNCPQCKTRYKRL 89 (1040)
T ss_pred cccCccccccccccCcC---------CCCC-EEEeeccCCCccccchhhhhhhc---CCccCcccCCchhhc
Confidence 35778999999998542 3344 34566668888999999733322 234899999887643
No 116
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.35 E-value=3.4 Score=40.68 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=38.7
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCC-----CcccHHHHHHhhhccCCC----CCCcccccCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-----HVFHAECLEQLTPKTQIH----EPPCPLCLKIVG 245 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-----HvFH~eCLe~Wl~~~~k~----dptCPlCR~~l~ 245 (347)
.+.+-.|-||...=.+ +....-|-||. |--|..||..|+.+.+.. .-.||-|+..+.
T Consensus 17 ~e~eR~CWiCF~TdeD-------------n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDED-------------NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcc-------------cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4567779999965322 11122345774 679999999999876542 247999998854
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.32 E-value=6.1 Score=38.95 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=36.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|+|=.-.+..+ ..-+++.+|||||-..-|.+.-. ..|++|...+.
T Consensus 110 a~fiCPvtgleMng~-------------~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~ 158 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGK-------------YRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQ 158 (293)
T ss_pred ceeecccccceecce-------------EEEEEEeccceeccHHHHHHhhh------ccccccCCccc
Confidence 556799887666432 22456779999999999987653 48999999865
No 118
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=64.94 E-value=3.6 Score=43.38 Aligned_cols=34 Identities=26% Similarity=0.655 Sum_probs=27.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP 228 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~ 228 (347)
++..|+||...|.+ ..+|+|+|-.+..|....+-
T Consensus 3 eelkc~vc~~f~~e-----------------piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE-----------------PIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC-----------------ceEeecccHHHHHHHHhhcc
Confidence 45689999998854 35799999999999987654
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.70 E-value=3.7 Score=41.25 Aligned_cols=33 Identities=30% Similarity=0.551 Sum_probs=24.4
Q ss_pred CCCcccHHHHHHhhhccCC---------CCCCcccccCCCCC
Q 019024 214 CRHVFHAECLEQLTPKTQI---------HEPPCPLCLKIVGP 246 (347)
Q Consensus 214 CGHvFH~eCLe~Wl~~~~k---------~dptCPlCR~~l~k 246 (347)
|.-..+.+||.+|+...+. +.-+||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 6677789999999864321 23589999998653
No 120
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=63.73 E-value=1.1 Score=32.00 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=22.6
Q ss_pred cceeeCCCCcccHHHHHHhhhccC--CCCCCcccccC
Q 019024 208 TAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLK 242 (347)
Q Consensus 208 vvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~ 242 (347)
.+.--.|+-.||..|+..-..... ...-.||.|+.
T Consensus 14 ~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 14 MIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 334446999999999986443211 12467998863
No 121
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=62.41 E-value=4.7 Score=38.13 Aligned_cols=54 Identities=22% Similarity=0.497 Sum_probs=36.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCC-----CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-----HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-----HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
++..|-||.......- ++ ..+.||. +..|..|++.|+... .+..|.+|...+..
T Consensus 77 ~~~~cRIc~~~~~~~~----------~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~--~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESN----------GL---LLISPCSCKGSLAYVHRSCLEKWFSIK--GNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEeccccccc----------cc---ccccCccccCcHHHHHHHHHHhhhccc--cCeeeeccccccee
Confidence 4678999998654310 00 1234553 556999999999743 44699999987654
No 122
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=60.67 E-value=4.4 Score=38.94 Aligned_cols=47 Identities=21% Similarity=0.545 Sum_probs=35.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
....|.+|.+.+-. .+....||=.||..|+...+.. .+.||-|.--+
T Consensus 180 nlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~----~~~cphc~d~w 226 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQR----RDICPHCGDLW 226 (235)
T ss_pred HHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhcc----cCcCCchhccc
Confidence 45689999988643 2445668888999999999974 46899996543
No 123
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=58.93 E-value=5.2 Score=25.94 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=24.3
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.|..|.+.+... + ..+..=+..||.+|+ .|..|...|.
T Consensus 1 ~C~~C~~~i~~~------------~---~~~~~~~~~~H~~Cf------------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGG------------E---LVLRALGKVWHPECF------------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCC------------c---EEEEeCCccccccCC------------CCcccCCcCc
Confidence 377888776431 1 223334899999985 4778877653
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.79 E-value=6.4 Score=43.71 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=16.3
Q ss_pred CCCCcccHHHHHHhhhcc
Q 019024 213 PCRHVFHAECLEQLTPKT 230 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~ 230 (347)
.|||.-|.+||.+|+...
T Consensus 798 ~C~H~gH~sh~~sw~~~~ 815 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKA 815 (839)
T ss_pred cccccccHHHHHHHHhcC
Confidence 599999999999999754
No 125
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=58.00 E-value=8 Score=43.56 Aligned_cols=52 Identities=23% Similarity=0.477 Sum_probs=35.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCC-----cccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRH-----VFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGH-----vFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.|...|-||...=.. |-| -.=||.. ..|.+||.+|+....+ ..|-+|..++.
T Consensus 10 ~d~~~CRICr~e~~~-------------d~p--LfhPCKC~GSIkYiH~eCL~eW~~~s~~--~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIR-------------DDP--LFHPCKCSGSIKYIHRECLMEWMECSGT--KKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCC-------------CCc--CcccccccchhHHHHHHHHHHHHhcCCC--cceeeecceee
Confidence 577889999854322 211 1235654 4899999999986543 47999998854
No 126
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.09 E-value=6.9 Score=39.72 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=36.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
....+||+=.+.-++ |-| ...|.||||.-.+-|.+.-..+ ....-||.|-.
T Consensus 334 Hs~FiCPVlKe~~t~-------------ENp-P~ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTD-------------ENP-PVMLECGHVISKEALSVLSQNG-VLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcc-------------cCC-CeeeeccceeeHHHHHHHhhcC-cEEeeCCCCCc
Confidence 456789987766543 323 3578999999999999765433 34568999953
No 127
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=54.15 E-value=5.9 Score=29.86 Aligned_cols=32 Identities=25% Similarity=0.717 Sum_probs=21.3
Q ss_pred eeCCC-CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 211 VLPCR-HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 211 vLpCG-HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
++.|. |..+..||..++... ..||||.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s----~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRS----DRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSS----SEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccc----cCCCcccCcCcc
Confidence 45575 999999999999743 489999988764
No 128
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.75 E-value=3.8 Score=30.16 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=12.9
Q ss_pred HHHHhhhccCCCCCCcccccCCCCC
Q 019024 222 CLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 222 CLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
-+.+++......+..||+|..+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 3555555555454589999999874
No 129
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=53.74 E-value=4 Score=44.71 Aligned_cols=52 Identities=23% Similarity=0.531 Sum_probs=39.5
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
...|+||...+.++ ..+.|-|.|...|+..-+...+. .-.||||+..+.|-+
T Consensus 21 ~lEc~ic~~~~~~p-----------------~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEP-----------------SLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeecc-----------------chhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhhhh
Confidence 45699999988652 35789999999999887654432 458999998877644
No 130
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.19 E-value=9.2 Score=39.37 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=28.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK 229 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~ 229 (347)
.....|+||.+.+.. ....+.|||.|+..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~----------------~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG----------------EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc----------------hhhhcCCCcHHHHHHHHHHhhh
Confidence 456789999988732 2456789999999999987754
No 131
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.85 E-value=7.2 Score=43.75 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcccccCCCCCCcCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLKIVGPLEES 250 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~~l~kl~~~ 250 (347)
.+..+|.||...+... .+.++...+-.|+|-|+-.||..|..... +..-.|++|..-|..+.+.
T Consensus 94 a~s~Ss~~C~~E~S~~----------~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~ 159 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPD----------VDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC 159 (1134)
T ss_pred ccccccchhheecCCc----------ccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh
Confidence 4667888998777431 11122222234999999999999986532 2234799999988765543
No 132
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=10 Score=41.59 Aligned_cols=49 Identities=27% Similarity=0.550 Sum_probs=36.9
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCC-cccHHHHHHhhhccC--CCCCCcccccCCCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRH-VFHAECLEQLTPKTQ--IHEPPCPLCLKIVGP 246 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGH-vFH~eCLe~Wl~~~~--k~dptCPlCR~~l~k 246 (347)
.|+||-..+ + .++.-.||| .-++.|..+.....+ +....||+|+..+..
T Consensus 2 ~c~ic~~s~---------------~--~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSP---------------D--FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCc---------------c--ccccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 599998776 3 456678999 999999988765443 234578999997654
No 133
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=50.48 E-value=5.2 Score=41.42 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcccccCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLKI 243 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~~ 243 (347)
.-|+|=+..|.-... .++.+.. +...-+.|.||||+-.+ .|-...+ ...-+||+|+..
T Consensus 278 pQCPVglnTL~fp~~--~~~~~~~-~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSK--SRKDVPD-ERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCcCCCccccccc--ccccccc-ccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 458887777654221 1111111 22234578999997643 5654332 124589999975
No 134
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=49.64 E-value=4.3 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.724 Sum_probs=17.4
Q ss_pred CCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 213 PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.=.||||.+|.. |-||.+.+..
T Consensus 111 Aqd~VYHl~CF~------------C~iC~R~L~T 132 (383)
T KOG4577|consen 111 AQDFVYHLHCFA------------CFICKRQLAT 132 (383)
T ss_pred hhcceeehhhhh------------hHhhhccccc
Confidence 457999999954 8999888654
No 135
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=49.30 E-value=18 Score=41.69 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=40.5
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
....++|.||.+++... ..|| +-||.-.||-=-|..|.+-=..+ .+..||-|+..+...
T Consensus 14 ~~~~qiCqICGD~vg~~---------~~Ge-~FVAC~eC~FPVCrpCYEYEr~e---G~q~CPqCktrYkr~ 72 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKT---------VDGE-PFVACDVCAFPVCRPCYEYERKD---GNQSCPQCKTKYKRH 72 (1079)
T ss_pred ccCCceeeecccccCcC---------CCCC-EEEEeccCCCccccchhhhhhhc---CCccCCccCCchhhh
Confidence 45778999999998542 4455 34566667777999999632222 234899999886643
No 136
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.15 E-value=8.5 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 213 PCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.|||+|-.+- .+..||+|...
T Consensus 6 ~CGy~y~~~~----------~~~~CP~Cg~~ 26 (33)
T cd00350 6 VCGYIYDGEE----------APWVCPVCGAP 26 (33)
T ss_pred CCCCEECCCc----------CCCcCcCCCCc
Confidence 4777765443 22479999864
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.37 E-value=9 Score=24.98 Aligned_cols=10 Identities=20% Similarity=0.634 Sum_probs=6.4
Q ss_pred cccccccchh
Q 019024 181 KCGVCSKLLS 190 (347)
Q Consensus 181 ~C~ICle~L~ 190 (347)
+|+-|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4777776653
No 138
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=4.8 Score=36.41 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=32.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
.++.+|.||++.-... |- .- ...-|.-.|++.|--+.....++-.-.|-+|++..
T Consensus 63 ~ddatC~IC~KTKFAD-----------G~-GH-~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD-----------GC-GH-NCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred CcCcchhhhhhccccc-----------cc-Cc-ccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 5788999999764221 00 00 01123444777777666655555556788888763
No 139
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.97 E-value=22 Score=40.92 Aligned_cols=57 Identities=21% Similarity=0.439 Sum_probs=40.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
...+.|.||.+.+... ..|| +-|+.-.|+--.|..|.+-=..+ .+..||-|+..+..
T Consensus 13 ~~~~~c~iCGd~vg~~---------~~Ge-~FVAC~eC~fpvCr~cyeye~~~---g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVK---------EDGQ-PFVACHVCGFPVCKPCYEYERSE---GNQCCPQCNTRYKR 69 (1044)
T ss_pred CCcchhhccccccCcC---------CCCC-EEEEeccCCCccccchhhhhhhc---CCccCCccCCchhh
Confidence 4778999999998542 4455 45666678877999999632222 33589999988764
No 140
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=46.80 E-value=18 Score=26.60 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=18.3
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC-CCCCCcccccCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ-IHEPPCPLCLKI 243 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~-k~dptCPlCR~~ 243 (347)
.|+|....+.. .++-..|.|+-+-+ |+.|+.... ...-.||+|.++
T Consensus 4 ~CPls~~~i~~----------------P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI----------------PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS----------------EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe----------------CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 47777766632 24556799873322 444554322 122579999863
No 141
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=3.9 Score=39.11 Aligned_cols=52 Identities=21% Similarity=0.532 Sum_probs=38.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeC--------CCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP--------CRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp--------CGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
....|.||...+... ....+..++. |||..+..|++.-+.... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n-----------~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSEN-----------DEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhcc-----------ccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccce
Confidence 346699999998632 1122345666 999999999998876443 689999975
No 142
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=44.00 E-value=13 Score=27.26 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.1
Q ss_pred Cccccccccchh
Q 019024 179 GQKCGVCSKLLS 190 (347)
Q Consensus 179 ~~~C~ICle~L~ 190 (347)
...||.|.+.|.
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 457999998653
No 143
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.47 E-value=14 Score=37.64 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=32.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcccccCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLKI 243 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~~ 243 (347)
.-.|++=+..|.-.+. ..+.. .++...-+.|.||||-..+ .|=...+ .+.-.||+|+..
T Consensus 290 RPQCPVglnTL~~P~~--~~~~~-~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSK--RRKRV-VDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCCCcccceeecccc--ccccc-ccccCCeEEEecccccccc---ccccccccCcccCcCCeeeee
Confidence 3458888888865432 11111 2233345789999983221 3543322 124579999964
No 144
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=43.42 E-value=30 Score=37.36 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=34.9
Q ss_pred CCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC----CCCCCcccccCC
Q 019024 174 VGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ----IHEPPCPLCLKI 243 (347)
Q Consensus 174 ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~----k~dptCPlCR~~ 243 (347)
........|+||.+.-.+- + .+..=-|.-.||.-||..=|.... .+.-.|--|-+.
T Consensus 539 ~~~a~~ysCgiCkks~dQH-------------l-l~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 539 APKAMNYSCGICKKSTDQH-------------L-LTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred cccccceeeeeeccchhhH-------------H-HhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 3346778999999875321 0 111124888999999987553322 233579999443
No 145
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=43.32 E-value=6.7 Score=28.11 Aligned_cols=38 Identities=24% Similarity=0.563 Sum_probs=26.4
Q ss_pred ccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 182 CGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 182 C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
|..|.+.+... .+.+..-|..||.+|+ .|=.|...|..
T Consensus 1 C~~C~~~I~~~---------------~~~~~~~~~~~H~~Cf------------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGT---------------EIVIKAMGKFWHPECF------------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSS---------------SEEEEETTEEEETTTS------------BETTTTCBTTT
T ss_pred CCCCCCCccCc---------------EEEEEeCCcEEEcccc------------ccCCCCCccCC
Confidence 67787776432 2222357999999994 48899988764
No 146
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.82 E-value=20 Score=36.35 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=34.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|+||-+++... +.. ..-.+||+..|.+|+..... .+..||.|+++..
T Consensus 248 v~~s~p~~~~~~~~~------------d~~-~lP~~~~~~~~l~~~~t~~~----~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLT------------DSN-FLPCPCGFRLCLFCHKTISD----GDGRCPGCRKPYE 298 (327)
T ss_pred cCCCCCCCCCccccc------------ccc-cccccccccchhhhhhcccc----cCCCCCccCCccc
Confidence 345799999987432 211 11246899988888886553 5679999997754
No 147
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=39.48 E-value=38 Score=26.32 Aligned_cols=46 Identities=30% Similarity=0.607 Sum_probs=32.2
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCC--CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR--HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG--HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..|-.|-++|...+ +. + ..|. ..|+++|.+..|. ..||-|...|.+
T Consensus 6 pnCE~C~~dLp~~s-------------~~-A-~ICSfECTFC~~C~e~~l~------~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-------------PE-A-YICSFECTFCADCAETMLN------GVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-------------Cc-c-eEEeEeCcccHHHHHHHhc------CcCcCCCCcccc
Confidence 35888988885432 11 2 2354 4799999998874 379999988764
No 148
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=36.46 E-value=4.4 Score=32.49 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=25.3
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
..|+.|...|... . ||.++..|....... +.||-|..+|..|.
T Consensus 2 ~~CP~C~~~L~~~--------------------~-~~~~C~~C~~~~~~~-----a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------------------G-GHYHCEACQKDYKKE-----AFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEE--------------------T-TEEEETTT--EEEEE-----EE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEe--------------------C-CEEECccccccceec-----ccCCCcccHHHHHH
Confidence 4699999887431 1 788888898876642 47999999987654
No 149
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=34.20 E-value=14 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=22.0
Q ss_pred ccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 218 FHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 218 FH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
||..||+.=|......+-.||.|...-.
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 8999999877666556678999997633
No 150
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=26 Score=34.67 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=28.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK 229 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~ 229 (347)
.+.+.|.+|+.++.. .++-+=||+|..|||.+.+-.
T Consensus 41 K~FdcCsLtLqPc~d-----------------Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD-----------------PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CCcceeeeecccccC-----------------CccCCCCeeeeHHHHHHHHHH
Confidence 467789999998753 234577999999999987743
No 151
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.41 E-value=52 Score=26.98 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=31.6
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCC--CCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPC--RHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpC--GHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.|--|-.+|...+ +| .+.| -|.|+++|.+.-+. -.||-|...+..
T Consensus 7 nCECCDrDLpp~s----------~d-----A~ICtfEcTFCadCae~~l~------g~CPnCGGelv~ 53 (84)
T COG3813 7 NCECCDRDLPPDS----------TD-----ARICTFECTFCADCAENRLH------GLCPNCGGELVA 53 (84)
T ss_pred CCcccCCCCCCCC----------Cc-----eeEEEEeeehhHhHHHHhhc------CcCCCCCchhhc
Confidence 4777888885421 12 2335 58999999997774 489999988763
No 152
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=32.33 E-value=24 Score=24.32 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=18.9
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCccc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFH 219 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH 219 (347)
.+|+-|...|.-. .++|-+.+- .+.--.|||+|+
T Consensus 3 i~Cp~C~~~y~i~----d~~ip~~g~--~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEID----DEKIPPKGR--KVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCC----HHHCCCCCc--EEECCCCCCEeC
Confidence 3688898887542 122222221 344456888885
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.58 E-value=24 Score=24.34 Aligned_cols=34 Identities=24% Similarity=0.543 Sum_probs=19.7
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCccc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFH 219 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH 219 (347)
.+|+-|...|.-. .+++-..+- .+.--.|+|+|.
T Consensus 3 i~CP~C~~~f~v~----~~~l~~~~~--~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVP----DDKLPAGGR--KVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcC----HHHcccCCc--EEECCCCCcEee
Confidence 3699999888542 122222222 344456888885
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.32 E-value=23 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=15.9
Q ss_pred eCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 212 LpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
..|||.|-...- ..+.....||.|..
T Consensus 9 ~~Cg~~fe~~~~-----~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEVLQS-----ISEDDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEEEEE-----cCCCCCCcCCCCCC
Confidence 358888865431 11123468999998
No 156
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=25.79 E-value=12 Score=39.34 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=15.8
Q ss_pred CCCCccccccccchhccCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPW 195 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~ 195 (347)
.++-.+|..|.+.|..++.+
T Consensus 299 Hv~CFtC~~C~r~L~Gq~FY 318 (468)
T KOG1701|consen 299 HVQCFTCRTCRRQLAGQSFY 318 (468)
T ss_pred cccceehHhhhhhhcccccc
Confidence 36778999999999877644
No 157
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.34 E-value=53 Score=33.60 Aligned_cols=47 Identities=9% Similarity=-0.079 Sum_probs=34.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCC-cccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRH-VFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGH-vFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+....|-+|.+.+. ..++.+||| .|+.+|.. +. -+++||+|......
T Consensus 341 ~s~~~~~~~~~~~~-----------------st~~~~~~~n~~~~~~a~--~s----~~~~~~~c~~~~~~ 388 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLL-----------------STIWSGGNMNLSPGSLAS--AS----ASPTSSTCDHNDHT 388 (394)
T ss_pred hhhcccccccCcee-----------------eeEeecCCcccChhhhhh--cc----cCCcccccccccee
Confidence 56667999987763 236778998 48888887 22 46899999886553
No 158
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=24.28 E-value=56 Score=26.71 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=20.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHH
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ 225 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~ 225 (347)
....|.||.+.... .+.- ..-.|...||..|...
T Consensus 54 ~~~~C~iC~~~~G~--------~i~C------~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGA--------CIKC------SHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCce--------eEEc------CCCCCCcCCCHHHHHH
Confidence 45679999976211 0010 0123777999999975
No 159
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.16 E-value=53 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.455 Sum_probs=25.1
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP 228 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~ 228 (347)
..|.+|...|..- .....-..||++|...|+.....
T Consensus 3 ~~C~~C~~~F~~~-------------~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLT-------------RRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCC-------------ccccccCcCcCCcChHHcCCeee
Confidence 4699999888531 01223457999999999987654
No 160
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.63 E-value=39 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.491 Sum_probs=18.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHH
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAE 221 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~e 221 (347)
.-.+|++|.. +..+ ......||+++|++
T Consensus 308 tS~~C~~cg~-~~~r---------------~~~C~~cg~~~~rD 335 (364)
T COG0675 308 TSKTCPCCGH-LSGR---------------LFKCPRCGFVHDRD 335 (364)
T ss_pred CcccccccCC-ccce---------------eEECCCCCCeehhh
Confidence 3356999998 4321 23345699999988
No 161
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.12 E-value=25 Score=34.04 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=20.1
Q ss_pred CCcccHHHHHHhhhccCCCCCCcccccCCCCCCcCCCCCcchhhhhhhhhccccc
Q 019024 215 RHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLEESSSVSEPLQMVLRSVQRSKG 269 (347)
Q Consensus 215 GHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~~~~a~~~ele~k~rs~rr~rn 269 (347)
.|.+|.-|-.+|-- ....||.|...-...-.......+-..++..|..|+.
T Consensus 196 R~L~Cs~C~t~W~~----~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~ 246 (290)
T PF04216_consen 196 RYLHCSLCGTEWRF----VRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGS 246 (290)
T ss_dssp EEEEETTT--EEE------TTS-TTT---SS-EEE--------SEEEEEETTTTE
T ss_pred EEEEcCCCCCeeee----cCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccc
Confidence 35566678888875 2358999987733211110112223344555666665
No 162
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=44 Score=35.42 Aligned_cols=43 Identities=30% Similarity=0.749 Sum_probs=31.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|.||.... . .++-+|- |.-|+..|+.. .+.||+|...+.
T Consensus 478 ~~~~~~~~~~~~-~-----------------~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 478 PNDVCAICYQEM-S-----------------ARITPCS---HALCLRKWLYV----QEVCPLCHTYMK 520 (543)
T ss_pred ccCcchHHHHHH-H-----------------hcccccc---chhHHHhhhhh----ccccCCCchhhh
Confidence 456799998775 1 1334566 99999999963 358999988754
No 163
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.1e+02 Score=34.17 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=38.2
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCc--------------------ccHHHHHHhhhccCC---
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV--------------------FHAECLEQLTPKTQI--- 232 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv--------------------FH~eCLe~Wl~~~~k--- 232 (347)
+.|..+|.-|++.+.+... +-. --|-+....||-. .|.+|...+..-.+.
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~----rrY---~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfH 170 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNS----RRY---LYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFH 170 (750)
T ss_pred CCchhhhHHHHHHhcCCCC----cce---eccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccc
Confidence 5788999999999876421 000 0122223345544 488999977644332
Q ss_pred -CCCCcccccCCCC
Q 019024 233 -HEPPCPLCLKIVG 245 (347)
Q Consensus 233 -~dptCPlCR~~l~ 245 (347)
+-..||.|.-.+.
T Consensus 171 AQp~aCp~CGP~~~ 184 (750)
T COG0068 171 AQPIACPKCGPHLF 184 (750)
T ss_pred cccccCcccCCCeE
Confidence 1247999987655
No 164
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=20.40 E-value=49 Score=26.01 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=14.9
Q ss_pred cceeeCCCCcccHHHHHHhh
Q 019024 208 TAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 208 vvavLpCGHvFH~eCLe~Wl 227 (347)
-|+.|.|||.=|..=--.|+
T Consensus 11 WVA~L~CGH~QHvRH~PPw~ 30 (61)
T PF12088_consen 11 WVAELSCGHTQHVRHDPPWQ 30 (61)
T ss_pred EEEEecccccccccCCCCCc
Confidence 68999999998875444444
No 165
>PLN02195 cellulose synthase A
Probab=20.13 E-value=93 Score=35.93 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=38.7
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+.|.||.+.+... ..|+ +-|+.-.|+---|..|.+-=..+ .+-.||-|+..+.
T Consensus 5 ~~~~c~~cgd~~~~~---------~~g~-~fvaC~eC~~pvCrpCyeyer~e---g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVD---------SNGE-AFVACHECSYPLCKACLEYEIKE---GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcC---------CCCC-eEEEeccCCCccccchhhhhhhc---CCccCCccCCccc
Confidence 456899999988542 3444 45677778888999999632222 2348999998765
No 166
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=62 Score=31.77 Aligned_cols=33 Identities=27% Similarity=0.623 Sum_probs=25.1
Q ss_pred eCCCCc---ccHHHHHH----hhhccCCCCCCcccccCCCC
Q 019024 212 LPCRHV---FHAECLEQ----LTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 212 LpCGHv---FH~eCLe~----Wl~~~~k~dptCPlCR~~l~ 245 (347)
-.|-|. =|..||.| |+...+ ++|.|-+|..++.
T Consensus 22 NVCEhClV~nHpkCiVQSYLqWL~DsD-Y~pNC~LC~t~La 61 (299)
T KOG3970|consen 22 NVCEHCLVANHPKCIVQSYLQWLQDSD-YNPNCRLCNTPLA 61 (299)
T ss_pred hHHHHHHhccCchhhHHHHHHHHhhcC-CCCCCceeCCccc
Confidence 346665 48999975 887665 7899999998865
Done!