Query 019024
Match_columns 347
No_of_seqs 264 out of 1294
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ecl_A Ring-box protein 2; RNF 99.4 4.4E-13 1.5E-17 104.2 5.1 63 177-245 13-75 (81)
2 1v87_A Deltex protein 2; ring- 99.4 9.2E-13 3.2E-17 106.7 6.6 71 178-248 24-96 (114)
3 1x4j_A Ring finger protein 38; 99.3 4.6E-13 1.6E-17 101.4 4.2 52 177-246 21-72 (75)
4 2ep4_A Ring finger protein 24; 99.3 9.4E-13 3.2E-17 99.1 5.2 54 177-248 13-66 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.3 1.1E-12 3.9E-17 93.2 3.9 50 178-245 4-54 (55)
6 2ect_A Ring finger protein 126 99.3 1.7E-12 5.9E-17 98.6 5.1 52 177-246 13-64 (78)
7 2ecm_A Ring finger and CHY zin 99.3 1.1E-12 3.9E-17 93.0 3.6 51 178-245 4-54 (55)
8 2ea6_A Ring finger protein 4; 99.3 2.4E-12 8.3E-17 94.6 5.3 56 177-246 13-68 (69)
9 2l0b_A E3 ubiquitin-protein li 99.3 1.5E-12 5.3E-17 102.8 3.9 52 177-246 38-89 (91)
10 2kiz_A E3 ubiquitin-protein li 99.3 2.3E-12 7.7E-17 95.8 4.5 52 177-246 12-63 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 3E-12 1E-16 95.0 4.2 56 177-246 8-63 (71)
12 3dpl_R Ring-box protein 1; ubi 99.3 3.6E-12 1.2E-16 105.1 4.9 64 177-245 35-100 (106)
13 2d8t_A Dactylidin, ring finger 99.2 7.2E-12 2.4E-16 94.1 5.0 49 177-246 13-61 (71)
14 1chc_A Equine herpes virus-1 r 99.2 4E-12 1.4E-16 94.0 2.3 50 178-247 4-53 (68)
15 2xeu_A Ring finger protein 4; 99.2 8.1E-12 2.8E-16 90.5 3.4 55 178-246 2-56 (64)
16 2ysl_A Tripartite motif-contai 99.1 5.3E-11 1.8E-15 88.9 6.1 52 177-246 18-69 (73)
17 1g25_A CDK-activating kinase a 99.1 3.9E-11 1.3E-15 88.4 4.7 54 177-246 1-55 (65)
18 2djb_A Polycomb group ring fin 99.1 3.6E-11 1.2E-15 90.5 4.4 50 177-246 13-62 (72)
19 2ecn_A Ring finger protein 141 99.1 4.7E-11 1.6E-15 88.8 4.3 49 177-247 13-61 (70)
20 4a0k_B E3 ubiquitin-protein li 99.1 9.3E-12 3.2E-16 104.8 0.5 64 177-245 46-111 (117)
21 2ct2_A Tripartite motif protei 99.1 9.6E-11 3.3E-15 90.0 5.9 56 177-246 13-68 (88)
22 2ecy_A TNF receptor-associated 99.1 7.6E-11 2.6E-15 87.1 5.1 50 177-246 13-62 (66)
23 2d8s_A Cellular modulator of i 99.1 7.7E-11 2.6E-15 92.7 5.3 54 176-246 12-70 (80)
24 4ayc_A E3 ubiquitin-protein li 99.1 3.7E-11 1.3E-15 101.3 3.3 47 179-246 53-99 (138)
25 2csy_A Zinc finger protein 183 99.1 8.3E-11 2.8E-15 90.2 4.6 47 178-245 14-60 (81)
26 1t1h_A Gspef-atpub14, armadill 99.1 1.6E-10 5.4E-15 87.6 5.5 50 177-246 6-55 (78)
27 2ysj_A Tripartite motif-contai 99.0 2.4E-10 8.2E-15 83.5 5.7 46 177-240 18-63 (63)
28 2yur_A Retinoblastoma-binding 99.0 1.7E-10 5.7E-15 87.6 4.8 51 177-246 13-64 (74)
29 2y43_A E3 ubiquitin-protein li 99.0 5.7E-11 2E-15 94.3 1.8 49 178-246 21-69 (99)
30 2ecj_A Tripartite motif-contai 99.0 2.7E-10 9.2E-15 81.3 5.1 46 177-240 13-58 (58)
31 2egp_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 87.4 4.0 53 177-246 10-65 (79)
32 3lrq_A E3 ubiquitin-protein li 99.0 8.4E-11 2.9E-15 94.3 2.4 50 178-246 21-70 (100)
33 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 95.8 3.0 49 178-246 51-99 (124)
34 2ckl_A Polycomb group ring fin 99.0 2.2E-10 7.6E-15 92.3 3.9 49 178-246 14-62 (108)
35 2ecw_A Tripartite motif-contai 99.0 5E-10 1.7E-14 84.9 5.6 53 177-246 17-71 (85)
36 2ecv_A Tripartite motif-contai 99.0 3.4E-10 1.2E-14 85.7 4.6 53 177-246 17-71 (85)
37 4ap4_A E3 ubiquitin ligase RNF 99.0 3E-10 1E-14 92.4 4.3 55 178-246 6-60 (133)
38 3ztg_A E3 ubiquitin-protein li 99.0 6.1E-10 2.1E-14 86.9 5.2 50 177-245 11-61 (92)
39 2ckl_B Ubiquitin ligase protei 98.9 3.8E-10 1.3E-14 97.3 3.6 50 178-246 53-102 (165)
40 4ap4_A E3 ubiquitin ligase RNF 98.9 5.6E-10 1.9E-14 90.8 3.0 56 177-246 70-125 (133)
41 3l11_A E3 ubiquitin-protein li 98.9 4E-10 1.4E-14 91.6 2.0 49 177-245 13-61 (115)
42 1jm7_A BRCA1, breast cancer ty 98.9 8.1E-10 2.8E-14 88.5 3.5 51 178-246 20-70 (112)
43 1z6u_A NP95-like ring finger p 98.8 1.4E-09 4.8E-14 93.8 3.5 49 178-246 77-125 (150)
44 1e4u_A Transcriptional repress 98.8 3.6E-09 1.2E-13 82.5 5.3 52 177-246 9-62 (78)
45 2ct0_A Non-SMC element 1 homol 98.8 1E-08 3.4E-13 80.1 6.6 52 177-246 13-64 (74)
46 1bor_A Transcription factor PM 98.8 1.8E-09 6.2E-14 78.3 1.8 46 177-246 4-49 (56)
47 3hct_A TNF receptor-associated 98.8 3.3E-09 1.1E-13 87.0 3.4 50 177-246 16-65 (118)
48 1rmd_A RAG1; V(D)J recombinati 98.7 3.5E-09 1.2E-13 86.1 3.0 49 178-246 22-70 (116)
49 2kr4_A Ubiquitin conjugation f 98.7 7.9E-09 2.7E-13 81.1 3.4 48 177-245 12-59 (85)
50 2kre_A Ubiquitin conjugation f 98.7 1E-08 3.4E-13 83.3 3.9 49 177-246 27-75 (100)
51 1jm7_B BARD1, BRCA1-associated 98.7 3.9E-09 1.3E-13 86.4 1.2 45 178-245 21-66 (117)
52 1wgm_A Ubiquitin conjugation f 98.7 1.4E-08 4.8E-13 82.1 4.3 49 177-246 20-69 (98)
53 2yu4_A E3 SUMO-protein ligase 98.7 5.5E-09 1.9E-13 83.2 1.7 50 177-243 5-59 (94)
54 4ic3_A E3 ubiquitin-protein li 98.6 7.9E-09 2.7E-13 78.8 2.1 44 178-246 23-67 (74)
55 2vje_A E3 ubiquitin-protein li 98.6 1.7E-08 5.8E-13 75.3 2.9 49 177-246 6-57 (64)
56 2y1n_A E3 ubiquitin-protein li 98.6 2.5E-08 8.5E-13 99.0 4.3 48 179-246 332-379 (389)
57 2c2l_A CHIP, carboxy terminus 98.6 2.5E-08 8.5E-13 90.2 3.9 50 176-245 205-254 (281)
58 3knv_A TNF receptor-associated 98.6 1.2E-08 4.2E-13 87.2 1.5 49 177-245 29-77 (141)
59 2vje_B MDM4 protein; proto-onc 98.5 3.5E-08 1.2E-12 73.4 2.3 48 178-246 6-56 (63)
60 2ecg_A Baculoviral IAP repeat- 98.5 6.8E-08 2.3E-12 73.5 3.0 44 178-246 24-68 (75)
61 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.6E-12 82.1 3.4 50 177-246 16-65 (170)
62 2ea5_A Cell growth regulator w 98.4 2.2E-07 7.6E-12 70.3 3.9 45 177-246 13-58 (68)
63 2yho_A E3 ubiquitin-protein li 98.3 1.3E-07 4.5E-12 73.4 1.9 44 178-246 17-61 (79)
64 2f42_A STIP1 homology and U-bo 98.3 2.5E-07 8.6E-12 83.0 3.7 50 176-245 103-152 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.2 8.5E-07 2.9E-11 66.1 3.4 49 178-245 5-58 (60)
66 1wim_A KIAA0161 protein; ring 98.2 7.1E-07 2.4E-11 70.3 3.0 52 178-243 4-61 (94)
67 3htk_C E3 SUMO-protein ligase 98.2 7.3E-07 2.5E-11 84.7 3.3 51 177-245 179-231 (267)
68 3k1l_B Fancl; UBC, ring, RWD, 98.1 3.8E-07 1.3E-11 89.9 0.9 57 178-245 307-372 (381)
69 3t6p_A Baculoviral IAP repeat- 98.1 5.4E-07 1.9E-11 87.7 1.8 44 178-246 294-338 (345)
70 3vk6_A E3 ubiquitin-protein li 97.8 7.6E-06 2.6E-10 67.7 3.0 49 181-248 3-51 (101)
71 2bay_A PRE-mRNA splicing facto 97.8 5.1E-06 1.7E-10 61.9 1.6 45 180-245 4-49 (61)
72 3nw0_A Non-structural maintena 97.2 0.00023 7.9E-09 66.0 4.1 51 178-246 179-229 (238)
73 2lri_C Autoimmune regulator; Z 93.3 0.089 3E-06 39.8 4.3 52 177-245 10-61 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 91.9 0.082 2.8E-06 41.4 2.6 35 178-226 2-36 (101)
75 2k16_A Transcription initiatio 90.4 0.081 2.8E-06 40.1 1.1 55 178-246 17-71 (75)
76 2yql_A PHD finger protein 21A; 88.0 0.11 3.6E-06 37.6 0.2 49 177-242 7-55 (56)
77 2ko5_A Ring finger protein Z; 86.4 0.44 1.5E-05 39.1 3.0 48 176-246 25-73 (99)
78 1f62_A Transcription factor WS 85.8 0.57 1.9E-05 32.8 3.0 32 212-243 19-50 (51)
79 3o36_A Transcription intermedi 85.8 0.28 9.7E-06 42.8 1.7 50 178-244 3-52 (184)
80 1fp0_A KAP-1 corepressor; PHD 85.5 0.75 2.6E-05 36.9 3.9 50 177-243 23-72 (88)
81 1wil_A KIAA1045 protein; ring 85.2 0.79 2.7E-05 37.0 3.9 35 177-226 13-47 (89)
82 1mm2_A MI2-beta; PHD, zinc fin 84.9 0.32 1.1E-05 35.8 1.4 52 177-245 7-58 (61)
83 1we9_A PHD finger family prote 84.7 0.25 8.7E-06 36.2 0.8 56 177-245 4-60 (64)
84 2l5u_A Chromodomain-helicase-D 84.5 0.59 2E-05 34.4 2.7 49 178-243 10-58 (61)
85 3u5n_A E3 ubiquitin-protein li 84.0 0.26 8.8E-06 44.0 0.6 50 178-244 6-55 (207)
86 1wev_A Riken cDNA 1110020M19; 83.9 0.15 5.2E-06 40.3 -0.8 61 178-250 15-79 (88)
87 2ysm_A Myeloid/lymphoid or mix 83.9 0.43 1.5E-05 38.5 1.9 51 177-241 5-55 (111)
88 1weo_A Cellulose synthase, cat 83.1 2.9 9.9E-05 34.0 6.4 59 177-248 14-72 (93)
89 2puy_A PHD finger protein 21A; 82.0 0.35 1.2E-05 35.3 0.6 52 177-245 3-54 (60)
90 2ro1_A Transcription intermedi 81.5 0.5 1.7E-05 41.9 1.5 49 179-244 2-50 (189)
91 2l4z_A DNA endonuclease RBBP8, 81.2 0.88 3E-05 37.5 2.8 40 178-245 60-99 (123)
92 1xwh_A Autoimmune regulator; P 80.4 0.41 1.4E-05 35.6 0.5 52 177-245 6-57 (66)
93 3lqh_A Histone-lysine N-methyl 78.0 0.19 6.5E-06 45.0 -2.4 58 179-246 2-66 (183)
94 2e6r_A Jumonji/ARID domain-con 77.0 0.48 1.7E-05 37.7 -0.0 53 177-243 14-66 (92)
95 2yt5_A Metal-response element- 76.6 0.45 1.5E-05 35.0 -0.3 56 177-244 4-62 (66)
96 1weu_A Inhibitor of growth fam 74.6 2.1 7.1E-05 34.4 3.1 30 214-245 57-87 (91)
97 2lbm_A Transcriptional regulat 70.2 4.1 0.00014 35.2 4.1 49 178-243 62-117 (142)
98 3shb_A E3 ubiquitin-protein li 68.4 1.5 5.3E-05 33.9 1.0 30 213-242 46-76 (77)
99 3v43_A Histone acetyltransfera 68.4 1.8 6.2E-05 35.1 1.4 30 213-242 82-111 (112)
100 1wen_A Inhibitor of growth fam 68.0 3.3 0.00011 31.4 2.8 30 214-245 37-67 (71)
101 2e6s_A E3 ubiquitin-protein li 66.6 1.8 6E-05 33.5 1.0 30 213-242 46-76 (77)
102 2ysm_A Myeloid/lymphoid or mix 66.5 1.2 4.2E-05 35.8 0.0 32 212-243 73-104 (111)
103 3v43_A Histone acetyltransfera 66.3 4.8 0.00016 32.6 3.6 55 179-241 5-62 (112)
104 2ri7_A Nucleosome-remodeling f 64.6 1.7 6E-05 37.2 0.7 52 178-243 7-59 (174)
105 2lv9_A Histone-lysine N-methyl 63.3 2.9 9.9E-05 33.4 1.7 32 211-243 45-76 (98)
106 3i2d_A E3 SUMO-protein ligase 61.4 9 0.00031 37.9 5.1 35 209-245 263-299 (371)
107 3asl_A E3 ubiquitin-protein li 59.8 2.6 8.9E-05 31.8 0.8 31 213-243 38-69 (70)
108 1x62_A C-terminal LIM domain p 58.3 4.7 0.00016 29.9 2.0 40 177-245 13-52 (79)
109 2ku3_A Bromodomain-containing 57.8 5.6 0.00019 30.2 2.4 53 176-242 13-65 (71)
110 2kwj_A Zinc finger protein DPF 57.4 2.5 8.4E-05 34.5 0.3 55 180-241 2-59 (114)
111 1wep_A PHF8; structural genomi 57.4 12 0.0004 28.4 4.1 37 209-245 28-65 (79)
112 3ql9_A Transcriptional regulat 56.7 8.3 0.00028 32.7 3.5 31 213-243 74-111 (129)
113 2cu8_A Cysteine-rich protein 2 55.8 3.6 0.00012 30.2 1.0 41 178-246 8-48 (76)
114 3ask_A E3 ubiquitin-protein li 55.7 3.7 0.00013 38.0 1.2 31 213-243 194-225 (226)
115 2vnf_A ING 4, P29ING4, inhibit 55.7 2.6 8.8E-05 30.9 0.1 27 214-242 31-58 (60)
116 2kgg_A Histone demethylase jar 55.2 1.6 5.6E-05 30.9 -1.0 48 181-241 4-52 (52)
117 3c6w_A P28ING5, inhibitor of g 55.0 2.8 9.7E-05 30.7 0.3 27 214-242 30-57 (59)
118 3m62_A Ubiquitin conjugation f 52.2 10 0.00036 41.7 4.2 50 176-246 888-938 (968)
119 1wee_A PHD finger family prote 51.4 3.2 0.00011 31.1 0.0 54 178-245 15-68 (72)
120 4gne_A Histone-lysine N-methyl 49.0 8.9 0.00031 31.4 2.4 50 176-244 12-63 (107)
121 1wfk_A Zinc finger, FYVE domai 48.2 8.7 0.0003 30.1 2.1 41 174-227 4-44 (88)
122 2l43_A N-teminal domain from h 48.1 5.7 0.00019 31.2 1.0 55 177-245 23-77 (88)
123 2vpb_A Hpygo1, pygopus homolog 47.7 10 0.00034 28.3 2.3 51 178-241 7-64 (65)
124 1wem_A Death associated transc 47.4 6.4 0.00022 29.6 1.2 52 179-245 16-72 (76)
125 2kwj_A Zinc finger protein DPF 46.9 3 0.0001 33.9 -0.8 33 212-244 77-109 (114)
126 2dar_A PDZ and LIM domain prot 45.2 4.6 0.00016 30.7 0.1 40 178-246 24-63 (90)
127 2xb1_A Pygopus homolog 2, B-ce 45.1 1.6 5.5E-05 35.4 -2.7 53 180-245 4-63 (105)
128 1x64_A Alpha-actinin-2 associa 45.1 10 0.00035 28.7 2.0 40 178-246 24-63 (89)
129 2dj7_A Actin-binding LIM prote 44.0 6.7 0.00023 29.5 0.8 41 177-245 13-53 (80)
130 2co8_A NEDD9 interacting prote 43.4 7.9 0.00027 29.0 1.1 42 177-246 13-54 (82)
131 2d8y_A Eplin protein; LIM doma 43.3 13 0.00043 28.2 2.3 41 178-246 14-54 (91)
132 4fo9_A E3 SUMO-protein ligase 42.7 29 0.00099 34.1 5.3 35 209-245 229-265 (360)
133 2d8x_A Protein pinch; LIM doma 41.2 7.9 0.00027 27.7 0.8 40 178-246 4-43 (70)
134 1x61_A Thyroid receptor intera 40.7 8.8 0.0003 27.6 1.0 41 178-245 4-44 (72)
135 1wyh_A SLIM 2, skeletal muscle 40.6 8.3 0.00028 27.6 0.8 41 179-246 5-45 (72)
136 1wew_A DNA-binding family prot 40.1 15 0.00051 27.9 2.3 33 213-245 37-74 (78)
137 3o70_A PHD finger protein 13; 40.0 6.9 0.00024 29.3 0.3 49 178-242 18-66 (68)
138 2jmo_A Parkin; IBR, E3 ligase, 39.5 5.4 0.00018 30.6 -0.3 16 213-228 55-70 (80)
139 1x4l_A Skeletal muscle LIM-pro 39.4 12 0.00041 26.9 1.5 42 179-245 5-46 (72)
140 2ct7_A Ring finger protein 31; 37.9 11 0.00037 29.1 1.1 14 213-226 48-61 (86)
141 3mpx_A FYVE, rhogef and PH dom 37.6 6.9 0.00024 37.4 0.0 38 178-228 374-411 (434)
142 1x4i_A Inhibitor of growth pro 36.7 16 0.00054 27.5 1.9 27 216-244 30-56 (70)
143 2cur_A Skeletal muscle LIM-pro 36.6 10 0.00035 27.1 0.8 38 179-245 5-42 (69)
144 1x4k_A Skeletal muscle LIM-pro 36.4 8.4 0.00029 27.6 0.3 40 180-246 6-45 (72)
145 3mjh_B Early endosome antigen 36.3 8.4 0.00029 25.8 0.3 14 178-191 4-17 (34)
146 1zfo_A LAsp-1; LIM domain, zin 35.9 14 0.00048 23.5 1.3 28 180-223 4-31 (31)
147 1g47_A Pinch protein; LIM doma 35.7 11 0.00037 27.4 0.8 42 178-246 10-51 (77)
148 2cor_A Pinch protein; LIM doma 35.6 17 0.00059 26.9 1.9 40 178-246 14-53 (79)
149 2d8z_A Four and A half LIM dom 34.7 12 0.00042 26.6 0.9 38 179-245 5-42 (70)
150 1nyp_A Pinch protein; LIM doma 34.3 10 0.00036 26.8 0.5 38 179-245 5-42 (66)
151 1wig_A KIAA1808 protein; LIM d 34.3 12 0.00039 27.5 0.8 37 180-245 6-42 (73)
152 1x63_A Skeletal muscle LIM-pro 33.8 14 0.00048 27.1 1.2 40 180-246 16-55 (82)
153 4g9i_A Hydrogenase maturation 33.8 85 0.0029 33.5 7.5 95 176-278 103-223 (772)
154 1v6g_A Actin binding LIM prote 33.7 10 0.00035 28.0 0.4 38 180-246 16-53 (81)
155 1x68_A FHL5 protein; four-and- 33.5 9.5 0.00032 27.9 0.2 41 180-245 6-46 (76)
156 2l3k_A Rhombotin-2, linker, LI 32.7 10 0.00035 30.6 0.2 38 181-245 10-47 (123)
157 1iml_A CRIP, cysteine rich int 32.6 8.9 0.00031 28.0 -0.1 38 181-246 2-39 (76)
158 2dlo_A Thyroid receptor-intera 32.4 9.7 0.00033 28.1 0.1 38 179-245 15-52 (81)
159 2g6q_A Inhibitor of growth pro 31.8 8.7 0.0003 28.3 -0.3 27 214-242 32-59 (62)
160 1x6a_A LIMK-2, LIM domain kina 30.8 13 0.00046 27.3 0.6 37 180-245 16-52 (81)
161 1dvp_A HRS, hepatocyte growth 29.8 18 0.00061 32.2 1.4 38 177-227 159-196 (220)
162 3zyq_A Hepatocyte growth facto 29.8 19 0.00064 32.5 1.5 38 177-227 162-199 (226)
163 1vfy_A Phosphatidylinositol-3- 29.3 25 0.00086 26.3 1.9 37 178-227 10-46 (73)
164 2jmi_A Protein YNG1, ING1 homo 28.9 11 0.00039 29.9 -0.1 25 216-242 50-75 (90)
165 1z60_A TFIIH basal transcripti 28.5 31 0.0011 25.5 2.2 44 180-241 16-59 (59)
166 3f6q_B LIM and senescent cell 27.6 15 0.00052 25.9 0.4 42 178-246 10-51 (72)
167 1m3v_A FLIN4, fusion of the LI 27.5 27 0.00091 28.0 1.9 11 180-190 6-16 (122)
168 2xqn_T Testin, TESS; metal-bin 27.2 41 0.0014 26.6 3.0 48 177-246 28-75 (126)
169 1z2q_A LM5-1; membrane protein 26.5 33 0.0011 26.3 2.2 37 178-227 20-56 (84)
170 1a7i_A QCRP2 (LIM1); LIM domai 26.5 7.7 0.00026 28.7 -1.4 41 178-246 6-46 (81)
171 2jne_A Hypothetical protein YF 26.1 4.9 0.00017 33.1 -2.7 45 177-248 31-75 (101)
172 3t7l_A Zinc finger FYVE domain 26.1 27 0.00093 27.2 1.7 38 178-228 19-56 (90)
173 1x3h_A Leupaxin; paxillin fami 25.7 15 0.00052 26.8 0.1 38 180-246 16-53 (80)
174 2zet_C Melanophilin; complex, 24.9 31 0.0011 29.8 1.9 52 177-243 66-117 (153)
175 2yw8_A RUN and FYVE domain-con 24.7 34 0.0012 26.1 1.9 37 178-227 18-54 (82)
176 1yuz_A Nigerythrin; rubrythrin 24.7 15 0.0005 32.9 -0.2 23 210-243 173-195 (202)
177 1joc_A EEA1, early endosomal a 24.5 29 0.001 28.7 1.7 37 178-227 68-104 (125)
178 3pwf_A Rubrerythrin; non heme 24.5 30 0.001 30.1 1.8 22 211-243 141-162 (170)
179 2cuq_A Four and A half LIM dom 22.9 21 0.00073 26.0 0.5 37 180-245 16-52 (80)
180 2rgt_A Fusion of LIM/homeobox 22.3 26 0.00089 29.5 0.9 26 215-246 52-77 (169)
181 2rsd_A E3 SUMO-protein ligase 22.2 14 0.00047 27.3 -0.7 29 214-242 32-64 (68)
182 2lcq_A Putative toxin VAPC6; P 21.8 15 0.00051 31.1 -0.7 29 210-248 134-162 (165)
183 1x4u_A Zinc finger, FYVE domai 21.6 37 0.0013 26.0 1.6 37 178-227 13-49 (84)
184 6rxn_A Rubredoxin; electron tr 21.6 42 0.0015 23.6 1.8 10 234-243 30-39 (46)
185 2gmg_A Hypothetical protein PF 21.3 45 0.0015 27.5 2.1 27 210-245 69-95 (105)
186 2egq_A FHL1 protein; LIM domai 21.1 19 0.00065 26.1 -0.1 41 180-245 16-57 (77)
187 1lko_A Rubrerythrin all-iron(I 21.0 22 0.00076 31.2 0.2 23 211-243 158-180 (191)
188 1j2o_A FLIN2, fusion of rhombo 20.8 31 0.0011 27.2 1.1 38 180-245 4-41 (114)
No 1
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.4e-13 Score=104.18 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.++++|+||++.|.+.++-..... ..++. ++.+++|||+||.+||++|+.. ..+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~-~~~~~-~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAEN-KQEDC-VVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHT-CTTTC-CEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCccccccc-CCCce-EEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcc
Confidence 356678888888865332211111 12231 3344469999999999999963 359999999876
No 2
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=9.2e-13 Score=106.71 Aligned_cols=71 Identities=25% Similarity=0.442 Sum_probs=46.4
Q ss_pred CCccccccccchhccCCCCcccccc-CCCCCcceeeCCCCcccHHHHHHhhhccC-CCCCCcccccCCCCCCc
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMR-GGDMPTAGVLPCRHVFHAECLEQLTPKTQ-IHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~-~~d~pvvavLpCGHvFH~eCLe~Wl~~~~-k~dptCPlCR~~l~kl~ 248 (347)
.++.|+||++.|.....+....... .....++.+++|||+||.+||.+|+.... ....+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4568999999997643211100000 01112445789999999999999995432 23469999999987643
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=101.42 Aligned_cols=52 Identities=33% Similarity=0.738 Sum_probs=43.0
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... + .+.+|+|||+||.+||.+|+... ..||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~------------~--~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR------------Q--LLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBT------------C--EEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCC------------C--eEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 4667899999998542 2 56789999999999999999743 589999998875
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.4e-13 Score=99.10 Aligned_cols=54 Identities=33% Similarity=0.694 Sum_probs=43.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
.+...|+||++.|... + .+.+|+|||+||.+||.+|+... ..||+||..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~------------~--~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPR------------D--ELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSS------------S--CEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCC------------C--cEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccccc
Confidence 3567899999998542 2 45678999999999999999743 48999999987654
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.30 E-value=1.1e-12 Score=93.21 Aligned_cols=50 Identities=40% Similarity=0.811 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeC-CCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp-CGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|+||++.|... + .+.+++ |||+||.+||.+|+.. ..+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~------------~--~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDG------------E--EARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTT------------S--CCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCC------------C--ceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 556799999998542 2 345676 9999999999999963 358999998764
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.7e-12 Score=98.56 Aligned_cols=52 Identities=29% Similarity=0.721 Sum_probs=42.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... + .+.+|+|||+||.+||.+|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~------------~--~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALG------------E--SVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTT------------S--CEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC------------C--CEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCC
Confidence 4567899999998542 2 4567899999999999999963 3589999999875
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.1e-12 Score=93.01 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=41.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|+||++.|... ++ .+.+++|||+||.+||.+|+... ..||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~-----------~~--~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-----------RV--VAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTT-----------TS--CEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCC-----------Cc--CeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 567899999998542 12 46789999999999999999743 58999998764
No 8
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=94.58 Aligned_cols=56 Identities=25% Similarity=0.529 Sum_probs=43.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.... ..+. .+.+++|||+||.+||++|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~--------~~~~--~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV--------QNGR--LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHT--------TTTC--CEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccc--------cccC--CeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 46778999999986521 1112 4477899999999999999974 3589999998763
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=102.82 Aligned_cols=52 Identities=31% Similarity=0.675 Sum_probs=42.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... + .+.+|+|||+||.+||.+|+.. ..+||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~------------~--~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG------------D--VATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTT------------C--EEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCC------------C--cEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 3667899999998542 2 5677999999999999999963 3589999998764
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=95.78 Aligned_cols=52 Identities=29% Similarity=0.731 Sum_probs=41.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... + .+.+++|||+||..||.+|+... .+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~------------~--~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEG------------E--DVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSS------------S--CEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCC------------C--cEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccC
Confidence 3566799999988532 2 45779999999999999999743 479999999874
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=3e-12 Score=95.03 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=43.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... +..++ .+++++|||+||.+||++|+... ..||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------VQNGR--LIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------HTTTC--CEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhcc--------ccccC--CeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccCh
Confidence 4677899999998652 11112 45789999999999999999643 589999999874
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.25 E-value=3.6e-12 Score=105.13 Aligned_cols=64 Identities=17% Similarity=0.353 Sum_probs=44.4
Q ss_pred CCCccccccccchhccCCCCccc--cccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHR--IMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~--i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+++++|+||++.|...++-+... .....+. .+++++|||+||.+||++|+.. ..+||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~-~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEEC-TVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CC-CEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccc-eEeecccCcEECHHHHHHHHHc----CCcCcCCCCcce
Confidence 46778999999997653311100 0112222 4677899999999999999963 359999999864
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.2e-12 Score=94.09 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=40.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. .++++|||+||.+||.+|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-----------------PVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS-----------------EEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC-----------------CEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCH
Confidence 567789999998743 356899999999999999963 3589999998763
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=4e-12 Score=93.97 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
+...|+||++.+.. .+.+++|||+||.+||.+|+... ..||+||..+..+
T Consensus 4 ~~~~C~IC~~~~~~----------------~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN----------------YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS----------------CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC----------------CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhHhh
Confidence 45679999998743 24678999999999999999633 5899999998753
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=8.1e-12 Score=90.52 Aligned_cols=55 Identities=27% Similarity=0.558 Sum_probs=42.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+... ...++ .+.+++|||+||.+||.+|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~--------~~~~~--~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEI--------VQNGR--LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHH--------HHTTC--CEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCc--------cccCC--CEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCc
Confidence 456899999998652 01112 4577899999999999999974 3589999998774
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5.3e-11 Score=88.86 Aligned_cols=52 Identities=25% Similarity=0.544 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. .++++|||+||.+||.+|+.... ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSS-----------------EEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCC-----------------eEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCc
Confidence 466789999998853 34579999999999999996322 34689999998764
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3.9e-11 Score=88.44 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCCcccccccc-chhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSK-LLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle-~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+++..|+||++ .|... . ..+.+++|||+||.+||++|+... ...||+|+..+.+
T Consensus 1 m~~~~C~IC~~~~~~~~------------~-~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRNP------------S-LKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRK 55 (65)
T ss_dssp CCTTCCSTTTTHHHHCS------------S-CCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSS
T ss_pred CCCCcCCcCCCCccCCC------------c-cCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCcccc
Confidence 35678999999 77542 1 123568999999999999997532 3589999999864
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.6e-11 Score=90.48 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.+ .+.+++|||+||.+||.+|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID----------------ATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS----------------CEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC----------------cCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCc
Confidence 356789999998853 2333499999999999999964 3589999999874
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.7e-11 Score=88.83 Aligned_cols=49 Identities=22% Similarity=0.647 Sum_probs=40.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPL 247 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl 247 (347)
.+...|+||++.+. . ++++|||+||.+||.+|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~-----------------~-~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRA-----------------D-LILPCAHSFCQKCIDKWSD----RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCC-----------------S-EEETTTEEECHHHHHHSSC----CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCcc-----------------C-cccCCCCcccHHHHHHHHH----CcCcCCCcCCcccCC
Confidence 35678999998863 2 5789999999999999996 345899999988753
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=9.3e-12 Score=104.82 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=1.7
Q ss_pred CCCccccccccchhccCCCCcc--ccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSH--RIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~--~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+++++|+||++.|...++-+.. .....++. .++.++|+|+||.+||.+|+.. ..+||+||..+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~-~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEEC-TVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWE 111 (117)
T ss_dssp CCC--------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhccccccccccc-ccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeee
Confidence 4567899999999764321110 00112232 3456799999999999999974 358999999854
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=9.6e-11 Score=89.98 Aligned_cols=56 Identities=25% Similarity=0.612 Sum_probs=42.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... +. ...+|+|||+||.+||.+|+.... ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~------------~~-~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEE------------QL-RPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTT------------SS-CEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCC
T ss_pred cCCCCCccCCcccccc------------CC-CeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccc
Confidence 4667899999998542 11 246789999999999999997532 23589999998764
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.6e-11 Score=87.13 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=40.0
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. .++++|||+||.+||.+|+.. ....||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS-----------------PKQTECGHRFCESCMAALLSS---SSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESS-----------------CCCCSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcC-----------------eeECCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCCh
Confidence 466789999999853 123799999999999999952 33589999998764
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.7e-11 Score=92.68 Aligned_cols=54 Identities=24% Similarity=0.508 Sum_probs=42.1
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCC-----CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-----HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-----HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+.++..|.||++.+... + ..++||+ |.||.+||++|+...+ ..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~------------~---~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDE------------S---PLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSS------------S---CEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCC------------C---eeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeec
Confidence 35677899999887431 2 2368996 9999999999997643 3589999999864
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.08 E-value=3.7e-11 Score=101.32 Aligned_cols=47 Identities=28% Similarity=0.673 Sum_probs=38.9
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+..|+||++.|.. .++++|||+||..||..|+. ....||+||..+..
T Consensus 53 ~~~C~iC~~~~~~-----------------~~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-----------------AVTLNCAHSFCSYCINEWMK----RKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-----------------EEEETTSCEEEHHHHHHHTT----TCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-----------------ceECCCCCCccHHHHHHHHH----cCCcCCCCCCcCCC
Confidence 4579999998843 35689999999999999996 33589999998864
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.3e-11 Score=90.15 Aligned_cols=47 Identities=26% Similarity=0.580 Sum_probs=39.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|+||++.|.. .++++|||+||..||.+|+.. ...||+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-----------------PVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-----------------EEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-----------------eeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 55689999999843 246899999999999999963 358999999986
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=1.6e-10 Score=87.63 Aligned_cols=50 Identities=8% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.+ .++++|||+||..||.+|+... ..+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~-----------------Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-----------------PVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-----------------EEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-----------------CEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCCh
Confidence 467789999998853 2457999999999999999632 3589999998763
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=83.52 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=36.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
.+...|+||++.|.. .++++|||+||.+||.+|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-----------------CEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCC-----------------eEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 466789999998853 24579999999999999997422 34589998
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=87.56 Aligned_cols=51 Identities=24% Similarity=0.594 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeC-CCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp-CGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.. .++++ |||+||..||.+|+.... ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTT-----------------CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhC-----------------CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 466789999998853 24588 999999999999997532 2589999997653
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=5.7e-11 Score=94.25 Aligned_cols=49 Identities=20% Similarity=0.581 Sum_probs=39.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .+.+++|||+||..||.+|+.. ...||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI----------------AMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC----------------cCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 45679999999853 2233489999999999999963 3589999998874
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.7e-10 Score=81.28 Aligned_cols=46 Identities=26% Similarity=0.745 Sum_probs=36.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLC 240 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlC 240 (347)
.+...|+||++.+.. .++++|||+||.+||.+|+...+ ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE-----------------PVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS-----------------CCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccCc-----------------cEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 366789999999853 23589999999999999975422 34689998
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-10 Score=87.36 Aligned_cols=53 Identities=21% Similarity=0.450 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC---CCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ---IHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~---k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.. ..+++|||+||.+||.+|+.... .....||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~-----------------p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE-----------------PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS-----------------CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC-----------------eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 466789999999843 23479999999999999996521 124689999998764
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=8.4e-11 Score=94.29 Aligned_cols=50 Identities=16% Similarity=0.407 Sum_probs=40.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .+.+++|||+||..||.+|+.... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD----------------ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC----------------ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCH
Confidence 56789999999853 233489999999999999997542 589999999863
No 33
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=95.77 Aligned_cols=49 Identities=22% Similarity=0.488 Sum_probs=39.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .++++|||.||..||..|+.. ....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-----------------PITTVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-----------------cEEeeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence 45679999999853 245799999999999999962 23589999999875
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.98 E-value=2.2e-10 Score=92.33 Aligned_cols=49 Identities=20% Similarity=0.536 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .+.+++|||+||..||.+|+.. ...||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID----------------ATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC----------------cCEeCCCCChhhHHHHHHHHHh----CCcCcCCCccccc
Confidence 56789999999853 2333499999999999999963 3689999999875
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=5e-10 Score=84.85 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC--CCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ--IHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~--k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. ..+++|||+||.+||..|+.... .....||+|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-----------------PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSS-----------------CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCc-----------------ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 356789999998843 23689999999999999997531 124689999998763
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.4e-10 Score=85.74 Aligned_cols=53 Identities=32% Similarity=0.634 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc--CCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT--QIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~--~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. ..+++|||+||.+||..|+... ......||+|+..+..
T Consensus 17 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ-----------------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS-----------------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC-----------------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 356789999998843 2357999999999999999751 1124689999999774
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=3e-10 Score=92.40 Aligned_cols=55 Identities=25% Similarity=0.561 Sum_probs=42.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.+. +..++ .+++++|||+||.+||++|+.. ..+||+|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~--------~~~~~--~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEI--------VQNGR--LIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHH--------HHTTC--CEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCc--------ccccc--CeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCcc
Confidence 567899999999652 11122 4578999999999999999963 3489999999874
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=6.1e-10 Score=86.88 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeC-CCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp-CGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+...|+||++.|.. .++++ |||+||..||..|+.... ...||+|+..+.
T Consensus 11 ~~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS-----------------CEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC-----------------ceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 467789999999853 24688 999999999999996432 358999999874
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.93 E-value=3.8e-10 Score=97.31 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=40.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .+.+++|||+||..||..|+... ...||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN----------------TMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC----------------cCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 55689999999853 33445999999999999999732 3589999999864
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=5.6e-10 Score=90.78 Aligned_cols=56 Identities=25% Similarity=0.548 Sum_probs=42.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|... ...+. .++.++|||+||..||++|+... .+||+||..+.+
T Consensus 70 ~~~~~C~iC~~~~~~~--------~~~~~--~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEI--------VQNGR--LIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHH--------HHTTC--CEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccc--------cccCc--ceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCCh
Confidence 3567799999998652 11112 34678999999999999999743 489999998764
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=4e-10 Score=91.61 Aligned_cols=49 Identities=29% Similarity=0.776 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.++..|+||++.|.. .++|+|||+||..||.+|+... ...||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVE-----------------PVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSS-----------------CEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCc-----------------eeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccC
Confidence 456789999998853 2467999999999999999632 358999999875
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=8.1e-10 Score=88.52 Aligned_cols=51 Identities=24% Similarity=0.587 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+.. ..+++|||+||..||.+|+.... ....||+|+..+..
T Consensus 20 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKE-----------------PVSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSS-----------------CCBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcC-----------------eEECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCH
Confidence 44579999998743 23479999999999999997432 23589999998774
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.83 E-value=1.4e-09 Score=93.83 Aligned_cols=49 Identities=24% Similarity=0.503 Sum_probs=40.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.|.. .++++|||+||..||..|+.. ....||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~-----------------pv~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-----------------PVTTECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcC-----------------CEEcCCCCchhHHHHHHHHHh---CCCcCCCCCccCCC
Confidence 45689999998853 245899999999999999973 23589999999875
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.82 E-value=3.6e-09 Score=82.55 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=39.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceee--CCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.++.+|+||++.+... + ++++ +|||.|+..||.++... ....||+||+.+.+
T Consensus 9 ~~~~~CpICle~~~~~------------d---~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID------------D---INFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTT------------T---TTCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccc------------c---ccccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCC
Confidence 4677899999987431 2 2344 49999999999998753 23589999999875
No 45
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=1e-08 Score=80.11 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=39.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.....|+||.+.+... +....|+|.||.+||.+|+... ...+||+|+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g----------------~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG----------------QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSS----------------EECSSSCCEECHHHHHHHSTTC--SSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccC----------------CccCCCCchhhHHHHHHHHHhc--CCCCCCCCcCcCCC
Confidence 4567899999998531 1233899999999999999643 22689999998764
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.8e-09 Score=78.25 Aligned_cols=46 Identities=26% Similarity=0.538 Sum_probs=36.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.. ..+|+|||+||..||.+|. ..||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~-----------------p~~l~CgH~fC~~Ci~~~~-------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-----------------PKLLPCLHTLCSGCLEASG-------MQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-----------------CSCSTTSCCSBTTTCSSSS-------SSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-----------------eEEcCCCCcccHHHHccCC-------CCCCcCCcEeec
Confidence 356679999998853 2468999999999998742 389999998764
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.76 E-value=3.3e-09 Score=86.99 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=40.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.. .++++|||+||..||.+|+.... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALRE-----------------AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcC-----------------eEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCH
Confidence 466789999998853 24579999999999999997543 389999998874
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.74 E-value=3.5e-09 Score=86.15 Aligned_cols=49 Identities=22% Similarity=0.540 Sum_probs=39.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+.. .++++|||+||..||.+|+... ...||+|+..+..
T Consensus 22 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD-----------------PVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC-----------------cEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCH
Confidence 45679999998853 2348999999999999999753 3589999999874
No 49
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.68 E-value=7.9e-09 Score=81.12 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+...|+||++.|.+ .++++|||+|...||++|+.. +.+||+|+..+.
T Consensus 12 p~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-----------------PVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCC
T ss_pred chheECcccCchhcC-----------------CeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCC
Confidence 467889999999864 356899999999999999973 358999999876
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.68 E-value=1e-08 Score=83.25 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.+.+ .++++|||+|+..||++|+.. +.+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~d-----------------PV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-----------------PVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-----------------EEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-----------------CeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence 477899999999864 356899999999999999962 3699999998763
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=3.9e-09 Score=86.44 Aligned_cols=45 Identities=24% Similarity=0.679 Sum_probs=37.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|+||++.|.. .+++ +|||+||..||..|+. ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~~-----------------pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-----------------PVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-----------------CBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-----------------ccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCc
Confidence 56679999998853 2345 9999999999999995 48999999985
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.66 E-value=1.4e-08 Score=82.15 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCC-CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.+ .++++|| |+|+..||++|+.. +.+||+|+..+..
T Consensus 20 p~~~~CpI~~~~m~d-----------------PV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-----------------PVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-----------------CeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCCh
Confidence 467899999999864 3468999 99999999999963 3699999998763
No 53
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=5.5e-09 Score=83.22 Aligned_cols=50 Identities=16% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeC-CCCcccHHHHHHhhhccC--CCCCCccc--ccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLP-CRHVFHAECLEQLTPKTQ--IHEPPCPL--CLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLp-CGHvFH~eCLe~Wl~~~~--k~dptCPl--CR~~ 243 (347)
.+...|+||++.|.+ .++++ |||+|+..||.+|+.... ....+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d-----------------PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-----------------PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS-----------------EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC-----------------CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 467789999999853 24575 999999999999997541 23468999 9866
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=7.9e-09 Score=78.81 Aligned_cols=44 Identities=23% Similarity=0.652 Sum_probs=36.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+.+ ++.++|||+ |+..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~-----------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-----------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-----------------EEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-----------------EEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 45679999988742 457899999 999999988 279999998764
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.60 E-value=1.7e-08 Score=75.32 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=38.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceee--CCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.++..|.||++...+ ++++ ||||+ |+.+|+.+|... ...||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN-----------------GCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC-----------------EEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC-----------------EEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhc
Confidence 466789999987642 2444 99999 899999999963 3489999998764
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.58 E-value=2.5e-08 Score=98.95 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=39.1
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
...|+||++.+. .+++++|||+||..||..|+... ...||+||..+..
T Consensus 332 ~~~C~ICle~~~-----------------~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-----------------DVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-----------------CEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-----------------CeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCC
Confidence 468999998873 24679999999999999999632 3589999998764
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.58 E-value=2.5e-08 Score=90.22 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=41.0
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+...|+||++.+.+ .++++|||+|+..||..|+.... .+||+|+..+.
T Consensus 205 ~~~~~~c~i~~~~~~d-----------------Pv~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-----------------PCITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSS-----------------EEECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcC-----------------CeECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCc
Confidence 3578899999999854 34689999999999999997532 35999999886
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.57 E-value=1.2e-08 Score=87.21 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=39.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.+...|+||++.|.. .+.++|||+||..||.+|+... ...||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~-----------------pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR-----------------PFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC-----------------cEECCCCCccCHHHHHHHHhcC---CCCCCCCCCccc
Confidence 366789999999853 2457999999999999999632 248999999764
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.50 E-value=3.5e-08 Score=73.38 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=37.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceee--CCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|.||++...+ ++++ ||||+ |+.+|+.+|... ...||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD-----------------GNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC-----------------EEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC-----------------eEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhc
Confidence 55679999987632 2344 99998 999999999853 2589999998764
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=6.8e-08 Score=73.51 Aligned_cols=44 Identities=23% Similarity=0.652 Sum_probs=35.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+.. +++++|||+ |+.+|+.+. ..||+||..+..
T Consensus 24 ~~~~C~IC~~~~~~-----------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA-----------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC-----------------BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC-----------------EEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 45579999988642 356899999 999999743 379999999875
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=82.14 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=40.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|+||++.|.. .+.++|||+|+..||.+|+.... ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~-----------------pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALRE-----------------AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcC-----------------cEECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcch
Confidence 467789999999853 23579999999999999997542 389999998764
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.2e-07 Score=70.31 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=36.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+...|.||++... .+++|||||+ |+.+|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhc
Confidence 35678999998753 3567899999 999999942 379999999875
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.33 E-value=1.3e-07 Score=73.38 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=36.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|.||++.+. .++.+||||+ |+.+|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 4457999998763 3567899999 9999999773 79999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=2.5e-07 Score=82.96 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=41.1
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+...|+||++.+.+ .++++|||+|...||..|+.... .+||+|+..+.
T Consensus 103 ip~~f~CPI~~elm~D-----------------PV~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~ 152 (179)
T 2f42_A 103 IPDYLCGKISFELMRE-----------------PCITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLT 152 (179)
T ss_dssp CCGGGBCTTTCSBCSS-----------------EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCC
T ss_pred CcHhhcccCccccCCC-----------------CeECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCC
Confidence 3588899999999853 34679999999999999997532 37999999876
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.19 E-value=8.5e-07 Score=66.10 Aligned_cols=49 Identities=18% Similarity=0.478 Sum_probs=36.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCC--C---cccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR--H---VFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG--H---vFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+...|.||++... + . .++||. | .||.+||++|+.... +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--------------~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--------------N--E-RFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--------------C--C-CCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--------------C--c-eecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 5678999997631 1 1 257865 4 999999999997532 358999998765
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=7.1e-07 Score=70.29 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=37.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc----CCCCCCccc--ccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT----QIHEPPCPL--CLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~----~k~dptCPl--CR~~ 243 (347)
...+|+||++.+... + .+.+.+|||.|+.+||.+++... ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~------------~--~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE------------Q--MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGG------------G--EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccc------------c--ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999987542 1 22234799999999999988642 112358999 9987
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.17 E-value=7.3e-07 Score=84.68 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccc--ccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPL--CLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPl--CR~~l~ 245 (347)
....+|+||++.|.+ .|....|||+|+..||.+|+... ....||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~D----------------PVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEA----------------PLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSS----------------EEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccC----------------CeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCc
Confidence 466789999999964 34445899999999999999643 2358999 999765
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.14 E-value=3.8e-07 Score=89.92 Aligned_cols=57 Identities=25% Similarity=0.526 Sum_probs=40.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCccee--eCCCCcccHHHHHHhhhccCC-------CCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGV--LPCRHVFHAECLEQLTPKTQI-------HEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvav--LpCGHvFH~eCLe~Wl~~~~k-------~dptCPlCR~~l~ 245 (347)
....|+||...+.. .+.+|.... ..|||.||..||.+|+..... -...||.|+.++.
T Consensus 307 ~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLD-----------GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecC-----------CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45679999988753 234554332 479999999999999965321 0137999999865
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=5.4e-07 Score=87.74 Aligned_cols=44 Identities=30% Similarity=0.714 Sum_probs=36.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCc-ccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV-FHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv-FH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|+||++.+.. ++.|||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~-----------------~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-----------------VVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC-----------------EEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc-----------------eEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 45689999988742 457899999 999999988 279999998764
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.83 E-value=7.6e-06 Score=67.70 Aligned_cols=49 Identities=29% Similarity=0.613 Sum_probs=39.8
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
-|.+|.-++.. -.+++||.|+|+.+|+..|.... +..||+|+..+.+++
T Consensus 3 fC~~C~~Pi~i----------------ygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV----------------YGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE----------------EEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE----------------EeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeeeeE
Confidence 48888877754 35789999999999999998643 348999999998765
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.81 E-value=5.1e-06 Score=61.87 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=36.9
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+||++.+.+ .+++ +|||+|-.+||++|+... .+||+++..+.
T Consensus 4 ~~CpIs~~~m~d-----------------PV~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR-----------------PVLSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS-----------------EEEETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCC
T ss_pred EEecCCCCCCCC-----------------CEEeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCC
Confidence 469999999853 2456 899999999999999743 37999998875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.18 E-value=0.00023 Score=65.95 Aligned_cols=51 Identities=27% Similarity=0.557 Sum_probs=38.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|.||.+.+... +..-.|+|.||.+|+..|+... ..+.||.|+..+..
T Consensus 179 ~i~~C~iC~~iv~~g----------------~~C~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----------------QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC----------------EECSSSCCEECHHHHHHHTTTC--SSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCC----------------cccCccChHHHHHHHHHHHHhC--CCCCCCCCCCCCCC
Confidence 467799999887531 1222399999999999999643 34699999998653
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.27 E-value=0.089 Score=39.78 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=36.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.....|.||.+. ++ .+.---|...||..||+..+......+-.||.|.....
T Consensus 10 ~~~~~C~vC~~~---------------~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---------------TD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---------------TT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---------------Ce--EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 455679999743 12 22233599999999999877665445568999986543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.89 E-value=0.082 Score=41.42 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=25.5
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQL 226 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~W 226 (347)
++..|.||.+.+... ++..-+.|+|.|+..||+.+
T Consensus 2 ee~~C~~C~~~~~~~--------------av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD--------------AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB--------------CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC--------------ceEECCcCChHHhHHHCHHH
Confidence 456799999764321 13334899999999999983
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.40 E-value=0.081 Score=40.06 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=35.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
+...|.||...... + ..+.-=.|.-.||..||..-.......+..||.|...+.+
T Consensus 17 ~~~~C~~C~~~~~~-------------~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDG-------------S-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSS-------------C-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCC-------------C-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 45569999876421 1 0222235889999999986544332245689999887664
No 76
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.01 E-value=0.11 Score=37.60 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=33.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
..+..|.||.+.- + .+.--.|.-.||..||..-+......+-.||.|..
T Consensus 7 ~~~~~C~vC~~~g---------------~--ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSG---------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSS---------------C--CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCC---------------e--EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4667799998641 2 23333699999999999655444334567999965
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.41 E-value=0.44 Score=39.13 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=35.9
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCC-CCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPC-RHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpC-GHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
...-..|-.|.-... .++.| .|.++..||..++... ..||||.+.|-+
T Consensus 25 ~~G~~nCKsCWf~~k-------------------~LV~C~dHYLCl~CLtlmL~~S----drCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK-------------------GLVECNNHYLCLNCLTLLLSVS----NRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCS-------------------SEEECSSCEEEHHHHHHTCSSS----SEETTTTEECCC
T ss_pred ccCcccChhhccccC-------------------CeeeecchhhHHHHHHHHHhhc----cCCcccCCcCCc
Confidence 356678999985432 23445 5999999999999744 379999999864
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.84 E-value=0.57 Score=32.81 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=22.9
Q ss_pred eCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 212 LpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
-.|.-.||..||..=+......+-.||.|...
T Consensus 19 d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 19 DECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 36899999999975444333345679999753
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.79 E-value=0.28 Score=42.81 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
.++.|.||.+. |+ .+.--.|.-+||..||..-+......+-.||.|+...
T Consensus 3 ~~~~C~~C~~~---------------g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---------------GE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---------------SS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---------------Ce--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999843 12 2222358899999999876654444456799999764
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.53 E-value=0.75 Score=36.86 Aligned_cols=50 Identities=28% Similarity=0.524 Sum_probs=34.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.....|.||.+. ++ .+.---|.-+||..||..=+......+-.||.|...
T Consensus 23 ~n~~~C~vC~~~---------------g~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---------------GD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---------------SC--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---------------CC--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456679999954 12 222235888999999987665444455689999865
No 81
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=85.25 E-value=0.79 Score=36.98 Aligned_cols=35 Identities=29% Similarity=0.624 Sum_probs=23.6
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHh
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQL 226 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~W 226 (347)
..+..|.||...=. ++ ...--.|+-+||..||.+.
T Consensus 13 ~~D~~C~VC~~~t~-------------~~--l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTA-------------ES--LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCS-------------SC--CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccc-------------cc--eeccccccccccHhhcccc
Confidence 46778999983311 12 1122359999999999986
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.86 E-value=0.32 Score=35.85 Aligned_cols=52 Identities=25% Similarity=0.416 Sum_probs=34.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.....|.||.+. ++ .+.--.|.-.||..||..-+......+-.||.|.....
T Consensus 7 ~~~~~C~vC~~~---------------g~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---------------GE--LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---------------SS--CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---------------CC--EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 355679999852 12 22223588999999999655444344567999987644
No 83
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.74 E-value=0.25 Score=36.16 Aligned_cols=56 Identities=21% Similarity=0.526 Sum_probs=35.4
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccC-CCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQ-IHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~-k~dptCPlCR~~l~ 245 (347)
.+...|+||.+.+... + ..|.--.|..-||..|+.--....+ .....||.|+..-.
T Consensus 4 ~e~~~C~~C~~~~~~~------------~-~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAAD------------E-FWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSS------------S-CEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCC------------C-CEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 3566799999876321 1 1333446889999999974332211 23468999987533
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.46 E-value=0.59 Score=34.38 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
....|.||.+.- + .+.--.|.-.||..||..-+......+-.||.|...
T Consensus 10 ~~~~C~vC~~~g---------------~--ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQGG---------------E--IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCCS---------------S--EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCCC---------------c--EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 556799998631 2 222335889999999997554444455689999753
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.97 E-value=0.26 Score=44.01 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=34.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
.+..|.||.+. ++ .+.-=.|...||..||..-+......+-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---------------g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---------------GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---------------EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---------------Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999843 12 2222258899999999876655444556899999753
No 86
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.95 E-value=0.15 Score=40.28 Aligned_cols=61 Identities=16% Similarity=0.444 Sum_probs=37.8
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc----cCCCCCCcccccCCCCCCcCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK----TQIHEPPCPLCLKIVGPLEES 250 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~----~~k~dptCPlCR~~l~kl~~~ 250 (347)
....|.||.+.-... .+. .+.-=.|...||..|+..-+.. .....-.|+.|.....++..+
T Consensus 15 ~~~~C~vC~~~~~~~----------~~~--ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 15 MGLACVVCRQMTVAS----------GNQ--LVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HCCSCSSSCCCCCCT----------TCC--EEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCcCCCCCCCCCCC----------CCc--eEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 345799999652210 011 2222258999999999976542 233456899999876655433
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=83.91 E-value=0.43 Score=38.48 Aligned_cols=51 Identities=24% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccccc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
..++.|.||.+.-.. .+ .+.--.|+..||..||...+.......-.||.|.
T Consensus 5 ~~~~~C~~C~~~g~~------------~~--ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL------------LD--QFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCT------------TT--SEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCC------------cC--CeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 467789999865210 01 2333469999999999977654333445677665
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.11 E-value=2.9 Score=33.99 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=42.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
...++|.||.+.+... ..++ +-|+.-.|+--.+.-|++--..+.+ ..||-|...+....
T Consensus 14 ~~~qiCqiCGD~VG~~---------~~Ge-~FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYkr~k 72 (93)
T 1weo_A 14 LDGQFCEICGDQIGLT---------VEGD-LFVACNECGFPACRPCYEYERREGT---QNCPQCKTRYKRLR 72 (93)
T ss_dssp CSSCBCSSSCCBCCBC---------SSSS-BCCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCCCCT
T ss_pred cCCCccccccCccccC---------CCCC-EEEeeeccCChhhHHHHHHHHhccC---ccccccCCcccccc
Confidence 4668999999997542 3444 2456667888899999997665443 48999998877543
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.99 E-value=0.35 Score=35.26 Aligned_cols=52 Identities=25% Similarity=0.481 Sum_probs=34.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+..|.||.+. ++ .+.--.|.-.||..||..-+......+-.||.|.....
T Consensus 3 ~~~~~C~vC~~~---------------g~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---------------GQ--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---------------SS--CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---------------Cc--EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356779999863 12 23333699999999999655443334567999976543
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.51 E-value=0.5 Score=41.93 Aligned_cols=49 Identities=29% Similarity=0.535 Sum_probs=33.0
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
+..|.+|.+. ++ .+.--.|.-+||..||..=+......+-.||.|+...
T Consensus 2 ~~~C~~C~~~---------------g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---------------GD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---------------SS--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---------------Cc--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3569999843 12 2233458899999999865544434556899998763
No 91
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=81.22 E-value=0.88 Score=37.47 Aligned_cols=40 Identities=20% Similarity=0.591 Sum_probs=28.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|.-|.+.+... ..+..-|..||.+|+ .|-.|...|.
T Consensus 60 ~~~~C~~C~~~I~~~----------------~~v~a~~~~wH~~CF------------~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR----------------FLLYAMDSYWHSRCL------------KCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSS----------------SEEEETTEEEETTTS------------BCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCc----------------EEEEeCCcEEccccc------------CcCcCCCccc
Confidence 346899999887431 123446999999994 4888988875
No 92
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.36 E-value=0.41 Score=35.62 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=34.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..+..|.||.+. ++ .+.--.|.-.||..||..-+......+-.||.|...-.
T Consensus 6 ~~~~~C~vC~~~---------------g~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG---------------GE--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC---------------SS--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC---------------CC--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 466789999853 12 22233588999999998655443334567999986533
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=77.98 E-value=0.19 Score=44.98 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=34.9
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh---cc----CCCCCCcccccCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP---KT----QIHEPPCPLCLKIVGP 246 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~---~~----~k~dptCPlCR~~l~k 246 (347)
+..|+||.+.+..... +...|.--.|..-||..|+.---. .. +.....||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~----------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDY----------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCT----------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCccc----------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4569999998864210 111233346899999999853110 00 0013589999987654
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.96 E-value=0.48 Score=37.68 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=34.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.+...|.||.+.-... . .+.-=-|...||..||..=+......+-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~------------~--ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD------------K--LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGG------------G--CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCC------------C--EEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 5667899999653210 1 122225899999999985444333345679999764
No 95
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.63 E-value=0.45 Score=34.97 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc--c-CCCCCCcccccCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK--T-QIHEPPCPLCLKIV 244 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~--~-~k~dptCPlCR~~l 244 (347)
.....|.||.....+. .++ .+.--.|.-.||..|+..-+.. . ...+-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~----------~~~--ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA----------PNE--MVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBT----------TBC--EEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCC----------CCC--EEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4667899999764221 111 2233368999999999864422 1 22446799998653
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.63 E-value=2.1 Score=34.37 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=21.1
Q ss_pred CC-CcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 214 CR-HVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 214 CG-HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
|. .-||..|+. +......+..||.|+....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 65 689999998 3333334568999987544
No 97
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=70.17 E-value=4.1 Score=35.18 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhc-------cCCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPK-------TQIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~-------~~k~dptCPlCR~~ 243 (347)
.++.|.||.+- |+ .+--=.|--+||..||..-+.. ....+..||+|...
T Consensus 62 ~~d~C~vC~~G---------------G~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAEG---------------GN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCCC---------------SS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCCC---------------Cc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 45679999843 23 2222268999999999965531 12345689999853
No 98
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.45 E-value=1.5 Score=33.94 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=22.0
Q ss_pred CCCCcccHHHHHHhhhccCCCC-CCcccccC
Q 019024 213 PCRHVFHAECLEQLTPKTQIHE-PPCPLCLK 242 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~d-ptCPlCR~ 242 (347)
.|...||..||..-+......+ -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5889999999997665444344 57999975
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.35 E-value=1.8 Score=35.12 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 213 PCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
.|...||..||..-+......+-.||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 589999999998666554444568999975
No 100
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=68.04 E-value=3.3 Score=31.41 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=21.2
Q ss_pred CC-CcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 214 CR-HVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 214 CG-HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
|. .-||..|+. +.........||.|+....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999998 3333334568999987544
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.62 E-value=1.8 Score=33.50 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=22.2
Q ss_pred CCCCcccHHHHHHhhhccCCC-CCCcccccC
Q 019024 213 PCRHVFHAECLEQLTPKTQIH-EPPCPLCLK 242 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~-dptCPlCR~ 242 (347)
.|...||..||..=+...... +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999999655443333 567999975
No 102
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.46 E-value=1.2 Score=35.76 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=23.4
Q ss_pred eCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 212 LpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
-.|...||..||..-+......+-.||.|..-
T Consensus 73 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 73 DTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46899999999986554443345679999764
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.31 E-value=4.8 Score=32.57 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=30.4
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHH---hhhccCCCCCCccccc
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQ---LTPKTQIHEPPCPLCL 241 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~---Wl~~~~k~dptCPlCR 241 (347)
...|.+|+..=... +....++ .+.--.|+..||..||.. ........+-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~------~~g~~~~--Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQN------REKKPEE--LISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCC------TTSCCCC--CEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhC------cCCCchh--ceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35699998653211 0011122 344457999999999963 2212222445677775
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=64.57 E-value=1.7 Score=37.19 Aligned_cols=52 Identities=23% Similarity=0.523 Sum_probs=31.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc-CCCCCCcccccCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT-QIHEPPCPLCLKI 243 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~-~k~dptCPlCR~~ 243 (347)
....| ||....... +. .+..-.|.-.||..|+.--.... ......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~-----------~~--mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDES-----------KF--YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTT-----------SC--EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCC-----------CC--EeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45568 999875321 11 23334689999999996322211 1234689999875
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.27 E-value=2.9 Score=33.40 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=21.6
Q ss_pred eeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 211 vLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
--.|.-.||..|+..-+.... ....||.|+..
T Consensus 45 Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 45 CDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR 76 (98)
T ss_dssp BTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred cCCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence 336899999999974332221 24689999743
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.44 E-value=9 Score=37.87 Aligned_cols=35 Identities=20% Similarity=0.457 Sum_probs=23.8
Q ss_pred ceeeCCCCc--ccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 209 AGVLPCRHV--FHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 209 vavLpCGHv--FH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
+.-..|.|+ |-.+=+.++.... ..-.||+|.+.+.
T Consensus 263 vRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 263 SKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIA 299 (371)
T ss_dssp EEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCC
T ss_pred CcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccC
Confidence 456789998 6666555554332 3468999998865
No 107
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=59.79 E-value=2.6 Score=31.82 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCCCcccHHHHHHhhhccCCC-CCCcccccCC
Q 019024 213 PCRHVFHAECLEQLTPKTQIH-EPPCPLCLKI 243 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~-dptCPlCR~~ 243 (347)
.|...||..||..=+...... +-.||.|...
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 588999999999654443333 5689999753
No 108
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.28 E-value=4.7 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=28.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.....|..|.+.+.. + .+..-+.+||.+|+ .|-.|...|.
T Consensus 13 ~~~~~C~~C~~~I~~-------------~----~~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-------------V----FVKLRDRHRHPECY------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-------------S----CEECSSCEECTTTT------------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-------------c----EEEECcceeCcCcC------------eeCCCCCCCC
Confidence 355689999988742 1 23456899999994 4888887754
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=57.78 E-value=5.6 Score=30.16 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
......|.||.+.-... .++ .+.-=.|.-.||..|+..-. ....+-.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~----------~~~--ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQN----------SNV--ILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCS----------SSC--EEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCC----------CCC--EEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 35778899998653110 111 22222588999999998432 2223467999975
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=57.42 E-value=2.5 Score=34.48 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh---ccCCCCCCccccc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP---KTQIHEPPCPLCL 241 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~---~~~k~dptCPlCR 241 (347)
..|.||+..-... .+.-..++ .+.--.|+..||..||+.... ......-.||.|.
T Consensus 2 ~~C~~C~~~~~~n-----~k~g~~~~--Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMN-----KKSGRPEE--LVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBC-----TTTCCCCC--CEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCcccc-----ccCCCCCC--CeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4699998764221 00011122 334457999999999985421 1222345677664
No 111
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.39 E-value=12 Score=28.44 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=24.4
Q ss_pred ceeeCCCCcccHHHHHHhhhccC-CCCCCcccccCCCC
Q 019024 209 AGVLPCRHVFHAECLEQLTPKTQ-IHEPPCPLCLKIVG 245 (347)
Q Consensus 209 vavLpCGHvFH~eCLe~Wl~~~~-k~dptCPlCR~~l~ 245 (347)
|.--.|..-||..|+.--..... .....||.|+....
T Consensus 28 IqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 28 IECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp EEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred EEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 34446999999999964322211 23468999998754
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=56.66 E-value=8.3 Score=32.73 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCCCcccHHHHHHhh-----hcc--CCCCCCcccccCC
Q 019024 213 PCRHVFHAECLEQLT-----PKT--QIHEPPCPLCLKI 243 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl-----~~~--~k~dptCPlCR~~ 243 (347)
.|-.+||.+||..-+ ... ....-.|++|.-.
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 588999999999642 222 2234589999653
No 113
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.82 E-value=3.6 Score=30.16 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=29.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+... + . +..-+.+||.+|+ .|-.|...|..
T Consensus 8 ~~~~C~~C~~~I~~~------------~--~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA------------E--K--VSSLGKDWHKFCL------------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTT------------T--E--EEETTEEEETTTC------------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECC------------e--E--EEECCeEeeCCCC------------CCCCCCCccCC
Confidence 456799999887521 2 2 3345899999984 58899888763
No 114
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=55.73 E-value=3.7 Score=38.02 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=19.9
Q ss_pred CCCCcccHHHHHHhhhccCCC-CCCcccccCC
Q 019024 213 PCRHVFHAECLEQLTPKTQIH-EPPCPLCLKI 243 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~~k~-dptCPlCR~~ 243 (347)
-|...||..||..=+...... +-.||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 588999999999655443333 5679999753
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=55.67 E-value=2.6 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=19.3
Q ss_pred CC-CcccHHHHHHhhhccCCCCCCcccccC
Q 019024 214 CR-HVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 214 CG-HvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
|. ..||..|+. +......+..||.|..
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 4443334568999965
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=55.22 E-value=1.6 Score=30.89 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=28.3
Q ss_pred cccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhccCCCCCCccccc
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
.|.||...+... + .-|.-- .|.-=||..|+.--..........||.|+
T Consensus 4 ~cc~C~~p~~~~------------~-~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK------------V-DWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT------------C-CEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC------------C-cEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 488998876321 1 123333 58888999998743322111346899985
No 117
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.96 E-value=2.8 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=19.2
Q ss_pred CC-CcccHHHHHHhhhccCCCCCCcccccC
Q 019024 214 CR-HVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 214 CG-HvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
|. .-||..|+. +......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 699999998 3333334568999975
No 118
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=52.25 E-value=10 Score=41.68 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCC-CcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCR-HVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCG-HvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..+...|+|-++.+.+ .++++.| ++|-..+|++|+.. +++||+=+.++..
T Consensus 888 iP~~F~cPIs~~lM~D-----------------PVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD-----------------PVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhC-----------------CeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCc
Confidence 4588899999998853 3568988 58999999999963 4699998888763
No 119
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.36 E-value=3.2 Score=31.12 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....| ||....... + ..|.--.|.--||..|+.--..........||.|+....
T Consensus 15 ~~~~C-~C~~~~~~g------------~-~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 15 WKVDC-KCGTKDDDG------------E-RMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SEECC-TTCCCSCCS------------S-CEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred cceEe-eCCCccCCC------------C-cEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 44558 798764221 1 123334588889999997433222234568999986543
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=49.02 E-value=8.9 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceee--CCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL--PCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL--pCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
+..+..|.||.+. ++ .+.-= .|--+||..||. +......+-.||-|.-.+
T Consensus 12 ~~~~~~C~~C~~~---------------G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDG---------------GE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCC---------------SE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCC---------------Cc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 4567789999832 12 11111 477899999998 443333445699776443
No 121
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.24 E-value=8.7 Score=30.14 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCCCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 174 VGPVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 174 ss~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
..+.+...|.+|...|..- ...-.--.||++|+..|....+
T Consensus 4 ~~~~~~~~C~~C~~~F~~~-------------~RrHHCR~CG~vfC~~Cs~~~~ 44 (88)
T 1wfk_A 4 GSSGMESRCYGCAVKFTLF-------------KKEYGCKNCGRAFCNGCLSFSA 44 (88)
T ss_dssp CCCCCCSBCTTTCCBCCSS-------------SCEEECSSSCCEEETTTSCEEE
T ss_pred CCCCcCCCCcCcCCcccCc-------------cccccCCCCCCEEChhHcCCce
Confidence 3445667899999988531 0012335799999999987654
No 122
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=48.09 E-value=5.7 Score=31.21 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.++..|.||.+.-... .++ .+.--.|.-.||..|+..-+ ....+-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~----------~~~--ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQN----------SNV--ILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCS----------EEE--EEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCC----------CCC--EEECCCCCchhhcccCCCCc--cCCCceECccccCccc
Confidence 3567899998653110 001 12222588899999998432 2223467999987644
No 123
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=47.73 E-value=10 Score=28.28 Aligned_cols=51 Identities=18% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhc------cCCCCCCccccc
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPK------TQIHEPPCPLCL 241 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~------~~k~dptCPlCR 241 (347)
....|++|.+++... ...|.-- .|.--||..|+.--... .......||.|.
T Consensus 7 ~~~~C~~C~~p~~~~-------------~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDD-------------QDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTT-------------SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCC-------------CCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 556799999987432 1123333 68889999998532211 011134688885
No 124
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.43 E-value=6.4 Score=29.58 Aligned_cols=52 Identities=19% Similarity=0.475 Sum_probs=31.1
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhcc-----CCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKT-----QIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~-----~k~dptCPlCR~~l~ 245 (347)
...| ||....... . .|.--.|..-||..|+.--.... ......||.|+....
T Consensus 16 ~~~C-~C~~~~~~~------------~--MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNR------------F--MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSS------------C--EEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCC------------C--EEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 898775311 1 33334689999999996322110 113468999986544
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.95 E-value=3 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=23.6
Q ss_pred eCCCCcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 212 LPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 212 LpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
-.|...||..||..=+......+-.||.|...+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchh
Confidence 368999999999965544433456799997643
No 126
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.24 E-value=4.6 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+.|.+.+.. + . +..-|..||.+|+ .|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-------------~--~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-------------P--F--LVALGKSWHPEEF------------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCS-------------C--E--EEETTEEECTTTC------------BCSSSCCBCSS
T ss_pred CCCCCccCCCEecc-------------e--E--EEECCccccccCC------------ccCCCCCCCCC
Confidence 45679999988732 2 2 3346899999984 48889888763
No 127
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=45.14 E-value=1.6 Score=35.42 Aligned_cols=53 Identities=26% Similarity=0.505 Sum_probs=31.9
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceee-CCCCcccHHHHHHhhhc------cCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVL-PCRHVFHAECLEQLTPK------TQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavL-pCGHvFH~eCLe~Wl~~------~~k~dptCPlCR~~l~ 245 (347)
..|+||.+.+... ++ .+.-= .|.--||.+|+.--... .......||.|+....
T Consensus 4 ~~C~iC~~p~~~~-----------~~--mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDD-----------QD--AILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTT-----------SC--EEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCC-----------CC--EEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4699999987431 11 11211 57888999998632110 0112358999998654
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=45.09 E-value=10 Score=28.68 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=29.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+.. + . +..-+.+||.+|+ .|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-------------~--~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-------------A--V--VKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-------------C--C--EESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-------------c--E--EEECCceECccCC------------EecCCCCCCCC
Confidence 45679999988742 1 2 3456899999994 48889888764
No 129
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.02 E-value=6.7 Score=29.45 Aligned_cols=41 Identities=20% Similarity=0.549 Sum_probs=28.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.....|..|.+.+... + .+ ..-+..||.+|+ .|-.|...|.
T Consensus 13 ~~~~~C~~C~~~I~~~------------~--~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHG------------Q--SL--LALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSS------------C--CE--EETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCC------------e--EE--EECCcccccccC------------CcCcCCCCcC
Confidence 4566799999887431 2 22 234889999984 4888988765
No 130
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.37 E-value=7.9 Score=29.04 Aligned_cols=42 Identities=29% Similarity=0.609 Sum_probs=28.5
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.....|..|.+.+... + .+ ..-+.+||.+|+ .|-.|...|..
T Consensus 13 ~~~~~C~~C~~~I~~~------------e--~v--~a~~~~wH~~CF------------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL------------E--RL--CVNGHFFHRSCF------------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTT------------T--BC--CBTTBCCBTTTC------------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccc------------e--EE--EECCCeeCCCcC------------EEcCCCCCcCC
Confidence 3556799999887421 2 22 235889999994 47788877664
No 131
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.27 E-value=13 Score=28.24 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=29.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+... + .+..-+.+||.+|+ .|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~------------~----~v~a~~~~~H~~CF------------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPM------------E----RLLANQQVFHISCF------------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTT------------S----EEECSSSEEETTTC------------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCc------------e----eEEECCCEECCCCC------------eeCCCCCCCCC
Confidence 456799999887431 2 23467899999984 47788877764
No 132
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.72 E-value=29 Score=34.13 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=24.6
Q ss_pred ceeeCCCCc--ccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 209 AGVLPCRHV--FHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 209 vavLpCGHv--FH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
++-..|.|. |-++=+-++.... ..-.||+|.+.+.
T Consensus 229 ~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 229 CRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA 265 (360)
T ss_dssp EEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred CcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence 456789998 7766666555433 3468999999876
No 133
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.17 E-value=7.9 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.643 Sum_probs=28.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+.. + .+ ..-+..||.+|+ .|-.|...|..
T Consensus 4 ~~~~C~~C~~~I~~-------------~--~~--~a~~~~~H~~CF------------~C~~C~~~L~~ 43 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-------------R--VI--KAMNNSWHPECF------------RCDLCQEVLAD 43 (70)
T ss_dssp CSSBCSSSCCBCCS-------------C--CE--EETTEEECTTTS------------BCSSSCCBCSS
T ss_pred CCCcCccCCCEecc-------------e--EE--EECcccccccCC------------EeCCCCCcCCC
Confidence 34579999988642 1 22 334889999984 48889888764
No 134
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.72 E-value=8.8 Score=27.56 Aligned_cols=41 Identities=29% Similarity=0.678 Sum_probs=27.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....|..|.+.+... + ..+..=+..||.+|+ .|-.|...|.
T Consensus 4 ~~~~C~~C~~~I~~~------------~---~~~~a~~~~~H~~CF------------~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGD------------G---AGVVALDRVFHVGCF------------VCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSS------------S---CCEECSSSEECTTTC------------BCSSSCCBCT
T ss_pred CCCCCccCCCccCCC------------c---eEEEECCCeEcccCC------------cccccCCcCC
Confidence 345799999876421 1 123445899999984 4888988874
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.62 E-value=8.3 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.492 Sum_probs=28.2
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
...|..|.+.+... + ..+..-|.+||.+|+ .|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~------------~---~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPG------------S---RKLEYGGQTWHEHCF------------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSS------------S---CEECSTTCCEETTTC------------BCTTTCCBTTT
T ss_pred CCCCccCCCccccC------------c---cEEEECccccCcccC------------eECCCCCcCCC
Confidence 35699999887421 1 123446899999984 48888887763
No 136
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.11 E-value=15 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=21.8
Q ss_pred CCCCcccHHHHHHhhhcc-----CCCCCCcccccCCCC
Q 019024 213 PCRHVFHAECLEQLTPKT-----QIHEPPCPLCLKIVG 245 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~~~-----~k~dptCPlCR~~l~ 245 (347)
.|..-||..|+.--.... ......||.|+..-.
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 699999999997322111 113468999987544
No 137
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=40.03 E-value=6.9 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
+...| ||...... + ..|.--.|..-||..|+.--.... .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~-------------~-~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-------------R-PMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT-------------C-CEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHT
T ss_pred CceEe-ECCCcCCC-------------C-CEEECCCCCccccccccCcCcccC-CCcEECCCCCC
Confidence 55568 99876531 1 123334599999999997433211 23468999975
No 138
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=39.55 E-value=5.4 Score=30.60 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=14.3
Q ss_pred CCCCcccHHHHHHhhh
Q 019024 213 PCRHVFHAECLEQLTP 228 (347)
Q Consensus 213 pCGHvFH~eCLe~Wl~ 228 (347)
.|||.|+..|.+.|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999998874
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.42 E-value=12 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=27.9
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|..|.+.+... ++ ...+..-+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~-----------~~--~~~~~a~~~~wH~~CF------------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGL-----------GG--TKYISFEERQWHNDCF------------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCS-----------SS--CSCEECSSCEECTTTC------------BCSSSCCBCT
T ss_pred CCCCcCCCccccCC-----------CC--cceEEECCcccCcccC------------EeccCCCcCC
Confidence 45699999887420 01 1123346999999984 4888988775
No 140
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=37.88 E-value=11 Score=29.11 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=12.9
Q ss_pred CCCCcccHHHHHHh
Q 019024 213 PCRHVFHAECLEQL 226 (347)
Q Consensus 213 pCGHvFH~eCLe~W 226 (347)
.||+.|+..|-..|
T Consensus 48 ~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 48 QCHQTFCVRCKRQW 61 (86)
T ss_dssp TTCCEECSSSCSBC
T ss_pred CCCCccccccCCch
Confidence 49999999999988
No 141
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.61 E-value=6.9 Score=37.45 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP 228 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~ 228 (347)
+...|.+|...|..- ...-..-.||++||..|....++
T Consensus 374 ~~~~c~~c~~~f~~~-------------~r~h~Cr~Cg~~~C~~Cs~~~~~ 411 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLT-------------LRRHHCHACGKIVCRNCSRNKYP 411 (434)
T ss_dssp ---------------------------------------------------
T ss_pred cCCcCCCcCCCCCCc-------------chhhhcccCcCEeehhhCCCeee
Confidence 356799999888421 00123457999999999987654
No 142
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.65 E-value=16 Score=27.53 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=18.5
Q ss_pred CcccHHHHHHhhhccCCCCCCcccccCCC
Q 019024 216 HVFHAECLEQLTPKTQIHEPPCPLCLKIV 244 (347)
Q Consensus 216 HvFH~eCLe~Wl~~~~k~dptCPlCR~~l 244 (347)
.-||.+|+.- .........||.|....
T Consensus 30 ~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 30 EWFHYGCVGL--TEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCEEHHHHTC--SSCCSSCCCCHHHHHHH
T ss_pred cCCccccccc--CcCCCCCEECCCCCccc
Confidence 6899999983 22223446799998643
No 143
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=10 Score=27.07 Aligned_cols=38 Identities=24% Similarity=0.553 Sum_probs=26.6
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|..|.+.+.. + .+ ..-+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-------------~--~~--~a~~~~~H~~CF------------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-------------G--GI--TYQDQPWHADCF------------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-------------T--CE--EETTEEECTTTT------------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-------------c--eE--EECccccccCcC------------EECCCCCCCC
Confidence 3569999988642 2 22 234889999884 4888888875
No 144
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.38 E-value=8.4 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=27.3
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..|..|.+.+... + ..+..-|.+||.+|+ .|-.|...|..
T Consensus 6 ~~C~~C~~~I~~~------------~---~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPG------------T---RKMEYKGSSWHETCF------------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSS------------S---CEEEETTEEEETTTT------------CCSSSCCCCCS
T ss_pred CCCccCCCcccCC------------c---eEEEECcCeecccCC------------cccccCCccCC
Confidence 4699999887431 1 123335889999884 48888887764
No 145
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.27 E-value=8.4 Score=25.78 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.6
Q ss_pred CCccccccccchhc
Q 019024 178 AGQKCGVCSKLLSQ 191 (347)
Q Consensus 178 d~~~C~ICle~L~~ 191 (347)
++..|+||++.|..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 56889999999854
No 146
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.92 E-value=14 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.581 Sum_probs=18.4
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHH
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECL 223 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCL 223 (347)
..|+.|.+..-.. | .+..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~~------------E----k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPT------------E----KVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGG------------G----CCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecc------------e----eEEECCeEecccCC
Confidence 4799999876321 1 12335899999984
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.74 E-value=11 Score=27.38 Aligned_cols=42 Identities=19% Similarity=0.511 Sum_probs=28.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+.|.+.+... + . .+..-|.+||.+|+ .|-.|...|..
T Consensus 10 ~~~~C~~C~~~I~~~------------~--~-~~~a~~~~~H~~CF------------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPA------------E--K-IVNSNGELYHEQCF------------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCST------------T--T-CEEETTEEECTTTC------------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCC------------c--e-EEEeCccEeccccC------------eECCCCCCCCC
Confidence 456799999887421 1 1 12235889999984 48888877653
No 148
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.56 E-value=17 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.437 Sum_probs=28.4
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|+-|.+.+.. + . +..-|.+||.+|+ .|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~-------------~--~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDE-------------Q--P--LIFKNDPYHPDHF------------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCS-------------C--C--CCCSSSCCCTTTS------------BCSSSCCBCCT
T ss_pred CCCCCccCCCEecc-------------e--E--EEECcceeCCCCC------------EeCCCCCccCC
Confidence 45679999988742 1 2 2345889999984 58889888763
No 149
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.75 E-value=12 Score=26.65 Aligned_cols=38 Identities=26% Similarity=0.582 Sum_probs=27.3
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|..|.+.+.. + . +..-+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-------------~--~--~~a~~~~~H~~CF------------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-------------G--G--VTYREQPWHKECF------------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-------------S--E--EESSSSEEETTTS------------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-------------c--e--EEECccccCCCCC------------ccCCCCCcCC
Confidence 3569999988742 1 2 3456899999984 4888888775
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=34.34 E-value=10 Score=26.76 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=27.5
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|+.|.+.+.. + .+..-|..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~-------------~----~~~a~~~~~H~~CF------------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEG-------------R----VVNAMGKQWHVEHF------------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCS-------------C----EECCTTSBEETTTC------------BCTTTCCBCS
T ss_pred CCCCcccCCEecc-------------e----EEEECccccccCcC------------EECCCCCCCC
Confidence 4569999988742 2 23456889999984 4888988776
No 151
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.28 E-value=12 Score=27.49 Aligned_cols=37 Identities=19% Similarity=0.565 Sum_probs=26.5
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+-|.+.+.. + . +..-+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-------------~--~--v~a~~~~wH~~CF------------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-------------R--V--LEAGEKHYHPSCA------------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-------------C--C--BCCSSCCBCTTTS------------CCSSSCCCCC
T ss_pred CCcccCCCEecC-------------e--e--EEeCCCCCCCCcC------------EeCCCCCCCC
Confidence 469999988743 1 2 2346899999984 4888888775
No 152
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.82 E-value=14 Score=27.14 Aligned_cols=40 Identities=30% Similarity=0.677 Sum_probs=27.5
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..|..|.+.+... + ..+..=+.+||.+|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~------------~---~~~~a~~~~~H~~CF------------~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAG------------D---QNVEYKGTVWHKDCF------------TCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSS------------S---CEEECSSCEEETTTC------------CCSSSCCCCTT
T ss_pred CcCccCCcccccC------------c---eEEEECccccccccC------------chhhCCCccCC
Confidence 4699999887421 1 123345899999984 48888888764
No 153
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=33.77 E-value=85 Score=33.49 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=50.8
Q ss_pred CCCCccccccccchhccCCCCccccccCCCCCcceeeCCCCc--------------------ccHHHHHHhhhccCCC--
Q 019024 176 PVAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHV--------------------FHAECLEQLTPKTQIH-- 233 (347)
Q Consensus 176 ~~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHv--------------------FH~eCLe~Wl~~~~k~-- 233 (347)
+.|..+|+-|++.|.+... +-. --|-+-...||-. +|.+|..++..-.+.+
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~----rry---~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfh 175 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTN----KRY---MYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYH 175 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTS----TTT---TCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTT
T ss_pred CCchhhhHHHHHHhcCCCC----Ccc---CCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCc
Confidence 4799999999999976421 000 0122222345543 6999999887544321
Q ss_pred --CCCcccccCCCC--CCcCCCCCcchhhhhhhhhccccceEEecCCCC
Q 019024 234 --EPPCPLCLKIVG--PLEESSSVSEPLQMVLRSVQRSKGIMISEADGD 278 (347)
Q Consensus 234 --dptCPlCR~~l~--kl~~~~a~~~ele~k~rs~rr~rn~vvd~~dg~ 278 (347)
-..||.|.-.+. ...+.....+.++..++-.+.- .+|.--++|+
T Consensus 176 Aqp~aC~~CGP~l~l~~~~~~~~~~~~i~~a~~~l~~G-~iva~kg~gg 223 (772)
T 4g9i_A 176 AEPTACPVCGPSYRLYTSDGQEIYGDPLRKAAELIDKG-YIVAIKGIGG 223 (772)
T ss_dssp CTTCCCTTTSCCEEEESSSCBCCTTHHHHHHHHHHTTS-CCEEECCSSS
T ss_pred CCCCCCccCCceEEEEcCCCCeechHHHHHHHHHHHcC-CEEEEecCCe
Confidence 147999987753 1122222233444455444443 3333334443
No 154
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.69 E-value=10 Score=28.02 Aligned_cols=38 Identities=18% Similarity=0.655 Sum_probs=26.5
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..|+.|.+.+.. + .+ ..-+.+||.+|+ .|-.|.+.|..
T Consensus 16 ~~C~~C~~~I~~-------------~--~v--~a~~~~wH~~CF------------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-------------E--VV--SALGKTYHPDCF------------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-------------C--CE--EETTEEECTTTS------------SCSSSCCCCCS
T ss_pred CcCccccCEecc-------------c--eE--EECCceeCccCC------------ccccCCCCCCC
Confidence 369999987642 1 22 335899999984 48888887763
No 155
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.51 E-value=9.5 Score=27.90 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=27.0
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|..|.+.+... ++ ...+..-+..||.+|+ .|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~-----------g~--~~~~~a~~~~wH~~CF------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGL-----------TG--AKFICFQDSQWHSECF------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTT-----------TT--CCEEEETTEEEEGGGC------------BCTTTCCBCS
T ss_pred CCCccCCCcccCC-----------CC--ceeEEECCcccCcccC------------ChhhCCCcCC
Confidence 4699999887420 01 1123345899999994 4888887765
No 156
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=32.67 E-value=10 Score=30.55 Aligned_cols=38 Identities=32% Similarity=0.690 Sum_probs=25.8
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
.|..|.+.+... +. + +..-+.+||.+|+ .|-.|.+.|.
T Consensus 10 ~C~~C~~~I~~~------------e~-~--~~a~~~~~H~~CF------------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAY------------EM-T--MRVKDKVYHLECF------------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTT------------CC-C--CCCSSCCCCTTTC------------BCTTTCCBCC
T ss_pred cccCCCCeecCC------------ce-E--EEECCcccccccC------------ccccCCCCCC
Confidence 699999887421 10 2 2234899999984 4888888873
No 157
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=32.61 E-value=8.9 Score=27.97 Aligned_cols=38 Identities=29% Similarity=0.562 Sum_probs=25.8
Q ss_pred cccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 181 KCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 181 ~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.|+.|.+.+... + . +..-|..||.+|+ .|-.|...|..
T Consensus 2 ~C~~C~~~I~~~------------~--~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFA------------E--R--VTSLGKDWHRPCL------------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGG------------G--E--EEETTEEEETTTC------------BCTTTCCBCCT
T ss_pred cCCCCCCEEECc------------e--E--EEECCccccCCCC------------CccccCccCCC
Confidence 588888876421 2 2 2334899999884 48888887764
No 158
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.40 E-value=9.7 Score=28.12 Aligned_cols=38 Identities=21% Similarity=0.616 Sum_probs=26.5
Q ss_pred CccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 179 GQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 179 ~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
...|+.|.+.+.. . . +..-+..||.+|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~-------------~--~--~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-------------R--I--LRAMGKAYHPGCF------------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-------------C--C--EEETTEEECTTTC------------BCSSSCCBCT
T ss_pred CCccccCCCeecc-------------e--e--EEECCccccHHhc------------CcccCCCccC
Confidence 3468899887642 1 2 2335889999884 4888988876
No 159
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.80 E-value=8.7 Score=28.32 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=19.1
Q ss_pred CC-CcccHHHHHHhhhccCCCCCCcccccC
Q 019024 214 CR-HVFHAECLEQLTPKTQIHEPPCPLCLK 242 (347)
Q Consensus 214 CG-HvFH~eCLe~Wl~~~~k~dptCPlCR~ 242 (347)
|. .-||..|+. +.........||.|+.
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcccEecccCC--cCcCCCCCEECcCccc
Confidence 55 899999998 3333334568999975
No 160
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.84 E-value=13 Score=27.27 Aligned_cols=37 Identities=27% Similarity=0.643 Sum_probs=26.4
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+.|.+.+.. + . +..-+..||.+|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~~-------------~--~--~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTG-------------P--F--MVAGEFKYHPECF------------ACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCS-------------C--C--BCCTTCCBCTTSC------------BCTTTCCBCC
T ss_pred CcCccCCCCcCc-------------e--E--EEECCceeccccC------------CccCCCCccC
Confidence 369999988742 1 2 2345899999884 4888988875
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.84 E-value=18 Score=32.20 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
.+...|.+|...|..- ...-.--.||++|+..|.....
T Consensus 159 ~~~~~C~~C~~~F~~~-------------~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFT-------------NRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCCSBCTTTCCBCCSS-------------SCCEECTTTCCEECSTTSCEEE
T ss_pred CCCCccCCCCCccCCc-------------ccccccCCcCCEEChHHhCCee
Confidence 3457899999988421 0012335799999999987654
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.76 E-value=19 Score=32.47 Aligned_cols=38 Identities=16% Similarity=0.452 Sum_probs=26.7
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
++...|.+|...|..- ...-.--.||++|+..|....+
T Consensus 162 ~~~~~C~~C~~~F~~~-------------~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVM-------------TRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CCCSBCTTTCCBCBTT-------------BCCEECTTTCCEECTTTCCEEE
T ss_pred ccCCCCcCcCCCCCcc-------------ccccccCCCcCEeChhhcCCcc
Confidence 5667899999888531 0012345799999999988654
No 163
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.34 E-value=25 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=24.9
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
++..|.+|...|..- ...-.--.||.+|+..|....+
T Consensus 10 ~~~~C~~C~~~F~~~-------------~RrHHCR~CG~v~C~~Cs~~~~ 46 (73)
T 1vfy_A 10 DSDACMICSKKFSLL-------------NRKHHCRSCGGVFCQEHSSNSI 46 (73)
T ss_dssp CCSBCTTTCCBCBTT-------------BCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcccCCCCccCCc-------------cccccCCCCCEEEcccccCCeE
Confidence 345799999988531 0012235799999999987544
No 164
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=28.91 E-value=11 Score=29.95 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=17.3
Q ss_pred CcccHHHHHHhhhccCCCCCCccc-ccC
Q 019024 216 HVFHAECLEQLTPKTQIHEPPCPL-CLK 242 (347)
Q Consensus 216 HvFH~eCLe~Wl~~~~k~dptCPl-CR~ 242 (347)
--||..|+. |.........||. |+.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 689999997 3232234568999 974
No 165
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.46 E-value=31 Score=25.54 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=28.6
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCccccc
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCL 241 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR 241 (347)
..|-.|+..|.... ...--.|+++|+.+|-.=.-... ..||-|.
T Consensus 16 ~~C~~C~~~~~~~~--------------~y~C~~C~~~FC~dCD~fiHe~L----h~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQH--------------VYVCAVCQNVFCVDCDVFVHDSL----HSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSE--------------EECCTTTTCCBCHHHHHTTTTTS----CSSSTTC
T ss_pred CcccccCcccCCCc--------------cEECCccCcCcccchhHHHHhhc----cCCcCCC
Confidence 35999999885321 12234699999999966333222 3799883
No 166
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.56 E-value=15 Score=25.89 Aligned_cols=42 Identities=19% Similarity=0.511 Sum_probs=28.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+... + . .+..=|.+||.+|+ .|=.|...|..
T Consensus 10 ~~~~C~~C~~~i~~~------------e--~-~~~~~~~~~H~~CF------------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPA------------E--K-IVNSNGELYHEQCF------------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTT------------C--E-EEEETTEEEETTTS------------SCTTTCCCCGG
T ss_pred CCccchhcCccccCC------------c--e-EEEeCcCeeCcCCC------------cccCCCCCCCC
Confidence 445799999887431 2 1 22245889999985 47788887653
No 167
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.51 E-value=27 Score=27.97 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=7.4
Q ss_pred ccccccccchh
Q 019024 180 QKCGVCSKLLS 190 (347)
Q Consensus 180 ~~C~ICle~L~ 190 (347)
..|+-|.+.+.
T Consensus 6 ~~C~~C~~~I~ 16 (122)
T 1m3v_A 6 KRCAGCGGKIA 16 (122)
T ss_dssp CCBSSSSSCCC
T ss_pred CCCcccCCEeC
Confidence 45777777664
No 168
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.18 E-value=41 Score=26.58 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=34.1
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
.+-.+|..|.+.|... .....=|..|+..|..+.+. +.|..|.+.|..
T Consensus 28 ~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~cy~~~~~------~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE----------------IYVMVNDKPVCKPCYVKNHA------VVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTS----------------EEEEETTEEEEHHHHHHHSC------CBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcC----------------EEEeECCEEechHHhCcCcC------ccCcccCCcCCc
Confidence 3557799999888532 12233477889999887553 589999998874
No 169
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=26.53 E-value=33 Score=26.31 Aligned_cols=37 Identities=14% Similarity=0.388 Sum_probs=25.3
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
+...|.+|...|..- ...-.--.||++|+..|....+
T Consensus 20 ~~~~C~~C~~~Fs~~-------------~RrHHCR~CG~v~C~~Cs~~~~ 56 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT-------------VRRHHCRNCGYVLCGDCSRHRA 56 (84)
T ss_dssp TCCBCTTTCCBCCTT-------------SCCEECTTTCCEECTGGGCCEE
T ss_pred CCCCCcCcCCccccc-------------hhcccccCCCcEEChHHhCCeE
Confidence 445699999988531 0012335799999999987654
No 170
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.53 E-value=7.7 Score=28.69 Aligned_cols=41 Identities=29% Similarity=0.678 Sum_probs=27.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
....|..|.+.+... + . +..-+..||.+|+ .|-.|...|..
T Consensus 6 ~~~~C~~C~~~I~~~------------~--~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 46 (81)
T 1a7i_A 6 GGNKCGACGRTVYHA------------E--E--VQCDGRSFHRCCF------------LCMVCRKNLDS 46 (81)
T ss_dssp --CBCSSSCCBCSST------------T--E--EEETTEEEESSSE------------ECSSSCCEECS
T ss_pred CCCcCcCcCccccCc------------e--e--EEeCCcccccccC------------ccCCCCCCCCC
Confidence 346799999887431 2 2 3346899999984 48888887753
No 171
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.12 E-value=4.9 Score=33.09 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=29.8
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
|+ ..|++|...|... =++.++..|-..... .+.||-|..+|.+|.
T Consensus 31 M~-~~CP~Cq~eL~~~---------------------g~~~hC~~C~~~f~~-----~a~CPdC~q~LevLk 75 (101)
T 2jne_A 31 ME-LHCPQCQHVLDQD---------------------NGHARCRSCGEFIEM-----KALCPDCHQPLQVLK 75 (101)
T ss_dssp CC-CBCSSSCSBEEEE---------------------TTEEEETTTCCEEEE-----EEECTTTCSBCEEEE
T ss_pred cc-ccCccCCCcceec---------------------CCEEECccccchhhc-----cccCcchhhHHHHHH
Confidence 44 7899999887421 034446666554443 247999999988754
No 172
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=26.12 E-value=27 Score=27.21 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTP 228 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~ 228 (347)
+...|.+|...|..- ...-.-..||++|+..|....+.
T Consensus 19 ~~~~C~~C~~~F~~~-------------~RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT-------------KRRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp GCCBCTTTCCBCCSS-------------SCCEECTTTCCEECGGGSCEEEE
T ss_pred cCCcCcCCCCcccch-------------hhCccccCCCCEECCcccCCeee
Confidence 345699999988421 00123457999999999987653
No 173
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.67 E-value=15 Score=26.80 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=26.8
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
..|..|.+.+.. + .+ ..-+..||.+|+ .|-.|...|..
T Consensus 16 ~~C~~C~~~I~~-------------~--~v--~a~~~~~H~~CF------------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-------------N--YL--SAMDTVWHPECF------------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-------------S--CE--EETTEEECTTTC------------BCSSSCCBSCS
T ss_pred CccccCCCeecc-------------e--eE--EECCCeEecCcC------------ChhhCCCCCCC
Confidence 469999988742 1 22 334889999884 48889888764
No 174
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.90 E-value=31 Score=29.80 Aligned_cols=52 Identities=15% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 177 VAGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 177 ~d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
.++..|.+|+..|.-- .. .-+.-..|.|.++..|-. |+... ..-.|=+|.+.
T Consensus 66 ~~~~~C~~C~~~fg~l--------~~----~g~~C~~C~~~VC~~C~~-~~~~~--~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLL--------LN----SRRQCLECSLFVCKSCSH-AHPEE--QGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGC--------SS----CCEECTTTCCEECGGGEE-CCSSS--SSCEEHHHHHH
T ss_pred CCCccchhhcCccccc--------cC----CCCcCCCCCchhhccccc-ccCCC--CcEeeHHHHHH
Confidence 4678899999998541 11 133456799999999983 44322 33579889865
No 175
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.72 E-value=34 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
+...|.+|...|..- ...-.--.||.+|+..|....+
T Consensus 18 ~~~~C~~C~~~Fs~~-------------~RrHHCR~CG~v~C~~Cs~~~~ 54 (82)
T 2yw8_A 18 EATHCRQCEKEFSIS-------------RRKHHCRNCGHIFCNTCSSNEL 54 (82)
T ss_dssp CCCBCTTTCCBCBTT-------------BCCEECTTTCCEECSGGGCEEE
T ss_pred cCCcccCcCCcccCc-------------cccccCCCCCCEEChHHhCCee
Confidence 345699999988521 0012335799999999998654
No 176
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.70 E-value=15 Score=32.90 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=14.4
Q ss_pred eeeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 210 avLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
....|||+|-. .. . -.||+|..+
T Consensus 173 ~C~~CG~i~~g------~~----p-~~CP~C~~~ 195 (202)
T 1yuz_A 173 LCPICGYIHKG------ED----F-EKCPICFRP 195 (202)
T ss_dssp ECSSSCCEEES------SC----C-SBCTTTCCB
T ss_pred EECCCCCEEcC------cC----C-CCCCCCCCC
Confidence 44568888652 00 1 279999876
No 177
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.52 E-value=29 Score=28.67 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=25.0
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
+...|.+|...|..- ...-.--.||++|+..|.....
T Consensus 68 ~~~~C~~C~~~Fs~~-------------~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 68 EVQNCMACGKGFSVT-------------VRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GCCBCTTTCCBCCSS-------------SCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCcCcCCccccc-------------cccccCCCCCeEEChHHhCCcc
Confidence 345799999988421 0012335799999999987654
No 178
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.47 E-value=30 Score=30.12 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=14.6
Q ss_pred eeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 211 vLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
...|||+|-. . .. ..||+|..+
T Consensus 141 C~~CG~i~~~--------~--~p-~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD--------E--AP-EYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES--------C--CC-SBCTTTCCB
T ss_pred eCCCCCeeCC--------C--CC-CCCCCCCCC
Confidence 4568998851 1 12 289999875
No 179
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.95 E-value=21 Score=25.99 Aligned_cols=37 Identities=35% Similarity=0.670 Sum_probs=26.3
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|..|.+.+.. + . +..=+..||.+|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~~-------------~--~--v~a~~~~~H~~CF------------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-------------G--G--VTYRDQPWHRECL------------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-------------C--C--EESSSSEECTTTC------------BCSSSCCBCT
T ss_pred CcCCCCCCEecC-------------c--E--EEECCchhhhhhC------------CcccCCCcCC
Confidence 469999887642 1 2 3345899999884 4888888875
No 180
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.27 E-value=26 Score=29.52 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=18.1
Q ss_pred CCcccHHHHHHhhhccCCCCCCcccccCCCCC
Q 019024 215 RHVFHAECLEQLTPKTQIHEPPCPLCLKIVGP 246 (347)
Q Consensus 215 GHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~k 246 (347)
|..|+..|..+-+. +.|..|...|..
T Consensus 52 g~~yC~~~y~~~f~------~~C~~C~~~I~~ 77 (169)
T 2rgt_A 52 ESVYCKDDFFKRFG------TKCAACQLGIPP 77 (169)
T ss_dssp SCEECHHHHHHHHS------CBCTTTCCBCCT
T ss_pred Ceeeeccccccccc------ccccccccccCC
Confidence 56677777766553 578888887764
No 181
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.16 E-value=14 Score=27.34 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=17.7
Q ss_pred CCCcccHHHHHHhhhccC----CCCCCcccccC
Q 019024 214 CRHVFHAECLEQLTPKTQ----IHEPPCPLCLK 242 (347)
Q Consensus 214 CGHvFH~eCLe~Wl~~~~----k~dptCPlCR~ 242 (347)
|.--||..|+.--..... .....||.|+.
T Consensus 32 C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 32 CQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 888899999852111111 01357999974
No 182
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.78 E-value=15 Score=31.12 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=18.6
Q ss_pred eeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCCCCc
Q 019024 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVGPLE 248 (347)
Q Consensus 210 avLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~kl~ 248 (347)
....|||.|-.. . ....||.|...+.++.
T Consensus 134 ~C~~Cg~~~~~~-----~-----~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 134 VCIGCGRKFSTL-----P-----PGGVCPDCGSKVKLIP 162 (165)
T ss_dssp EESSSCCEESSC-----C-----GGGBCTTTCCBEEECC
T ss_pred ECCCCCCcccCC-----C-----CCCcCCCCCCcceeCC
Confidence 345699999543 1 1137999998865443
No 183
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=37 Score=25.96 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhh
Q 019024 178 AGQKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLT 227 (347)
Q Consensus 178 d~~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl 227 (347)
+...|.+|...|..- ...-.--.||.+|+..|....+
T Consensus 13 ~~~~C~~C~~~F~~~-------------~RrHHCR~CG~vfC~~Cs~~~~ 49 (84)
T 1x4u_A 13 NFGNCTGCSATFSVL-------------KKRRSCSNCGNSFCSRCCSFKV 49 (84)
T ss_dssp CCSSCSSSCCCCCSS-------------SCCEECSSSCCEECTTTSCEEE
T ss_pred CCCcCcCcCCccccc-------------hhhhhhcCCCcEEChhhcCCce
Confidence 345699999988421 0012335799999999987544
No 184
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.64 E-value=42 Score=23.61 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=7.7
Q ss_pred CCCcccccCC
Q 019024 234 EPPCPLCLKI 243 (347)
Q Consensus 234 dptCPlCR~~ 243 (347)
+-.||+|...
T Consensus 30 dw~CP~Cg~~ 39 (46)
T 6rxn_A 30 DWCCPVCGVS 39 (46)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 3579999875
No 185
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.27 E-value=45 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=17.5
Q ss_pred eeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 210 GVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 210 avLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
....||++| .+ ... ....||.|+....
T Consensus 69 ~C~~CG~~F----~~----~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 69 QCRKCGFVF----KA----EIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp BBTTTCCBC----CC----CSS-CCSSCSSSCCCCB
T ss_pred ChhhCcCee----cc----cCC-CCCCCcCCCCCcc
Confidence 456799999 11 111 2258999998744
No 186
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.14 E-value=19 Score=26.07 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=26.7
Q ss_pred ccccccccchhccCCCCccccccCC-CCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGG-DMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~-d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+.|.+.+.. .+ + ...+..=+..||.+|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~~-----------~g~~--~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITG-----------FGKG--SSVVAYEGQSWHDYCF------------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCC-----------CSSC--CCEEEETTEEEETTTC------------BCSSSCCBCT
T ss_pred ccCcccCCcccC-----------CCCC--ceeEEECcceeCcccC------------EehhcCCCCC
Confidence 469999888742 00 1 1122334889999984 5888988876
No 187
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.02 E-value=22 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=14.5
Q ss_pred eeCCCCcccHHHHHHhhhccCCCCCCcccccCC
Q 019024 211 VLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKI 243 (347)
Q Consensus 211 vLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~ 243 (347)
...|||+|-.+ +..+ .||+|..+
T Consensus 158 C~~CG~~~~g~---------~~p~-~CP~C~~~ 180 (191)
T 1lko_A 158 CRNCGYVHEGT---------GAPE-LCPACAHP 180 (191)
T ss_dssp ETTTCCEEEEE---------ECCS-BCTTTCCB
T ss_pred ECCCCCEeeCC---------CCCC-CCCCCcCC
Confidence 45688887522 1112 79999986
No 188
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=31 Score=27.22 Aligned_cols=38 Identities=26% Similarity=0.657 Sum_probs=26.2
Q ss_pred ccccccccchhccCCCCccccccCCCCCcceeeCCCCcccHHHHHHhhhccCCCCCCcccccCCCC
Q 019024 180 QKCGVCSKLLSQKSPWSSHRIMRGGDMPTAGVLPCRHVFHAECLEQLTPKTQIHEPPCPLCLKIVG 245 (347)
Q Consensus 180 ~~C~ICle~L~~~s~~~s~~i~~~~d~pvvavLpCGHvFH~eCLe~Wl~~~~k~dptCPlCR~~l~ 245 (347)
..|+-|.+.+... ..+..-+..||.+|+ .|-.|...|.
T Consensus 4 ~~C~~C~~~I~~~----------------~~~~a~~~~wH~~CF------------~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDR----------------YFLKAIDQYWHEDCL------------SCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSS----------------EEEECSSSEECTTTC------------CCSSSCSCCC
T ss_pred CCCcCCCCeeCCc----------------EEEEECchhHHHhcC------------cccccCCchh
Confidence 4699998876431 123346889999884 4888888775
Done!