Query 019025
Match_columns 347
No_of_seqs 191 out of 1178
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 1.3E-58 2.9E-63 461.8 21.9 337 1-345 1-337 (473)
2 KOG1303 Amino acid transporter 100.0 1.4E-49 3.1E-54 390.1 19.8 289 42-346 30-332 (437)
3 KOG1304 Amino acid transporter 100.0 4.4E-45 9.5E-50 353.9 18.0 296 43-346 40-347 (449)
4 PTZ00206 amino acid transporte 100.0 1.2E-41 2.5E-46 340.5 20.7 281 45-345 55-362 (467)
5 PF01490 Aa_trans: Transmembra 100.0 9.8E-42 2.1E-46 334.7 1.3 283 48-346 1-299 (409)
6 KOG4303 Vesicular inhibitory a 100.0 2.4E-32 5.1E-37 252.6 4.1 282 49-345 116-404 (524)
7 KOG1305 Amino acid transporter 100.0 1.1E-30 2.3E-35 255.4 13.4 276 50-345 6-305 (411)
8 COG0814 SdaC Amino acid permea 100.0 1.9E-27 4.2E-32 234.4 17.3 250 49-313 8-269 (415)
9 PRK10483 tryptophan permease; 99.7 4.4E-16 9.6E-21 152.5 17.4 229 48-291 9-247 (414)
10 PRK09664 tryptophan permease T 99.6 5.1E-15 1.1E-19 144.9 17.5 222 51-287 10-244 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.6 1.8E-14 3.9E-19 141.5 19.4 224 50-288 3-236 (394)
12 PRK15132 tyrosine transporter 99.6 2.1E-14 4.5E-19 141.0 17.9 232 51-298 4-243 (403)
13 TIGR00837 araaP aromatic amino 99.6 1.9E-14 4.1E-19 140.7 15.1 227 58-298 5-240 (381)
14 PRK13629 threonine/serine tran 99.4 4.7E-11 1E-15 117.5 18.7 229 57-299 26-282 (443)
15 TIGR00814 stp serine transport 99.3 2.2E-10 4.8E-15 112.6 18.3 232 56-299 9-256 (397)
16 TIGR00912 2A0309 spore germina 99.0 1.1E-08 2.4E-13 99.1 17.4 233 51-300 4-242 (359)
17 PRK10655 potE putrescine trans 98.9 2.3E-07 5.1E-12 92.4 21.1 227 51-293 9-246 (438)
18 TIGR00909 2A0306 amino acid tr 98.9 2.5E-07 5.4E-12 91.8 20.6 230 50-293 5-252 (429)
19 PRK10435 cadB lysine/cadaverin 98.9 2.7E-07 5.8E-12 92.0 20.5 230 51-296 8-247 (435)
20 PRK10644 arginine:agmatin anti 98.8 6.7E-07 1.5E-11 89.4 20.7 234 50-297 10-252 (445)
21 PF03845 Spore_permease: Spore 98.8 6.1E-07 1.3E-11 85.8 18.9 231 51-299 3-237 (320)
22 TIGR01773 GABAperm gamma-amino 98.8 2.3E-06 5E-11 85.6 23.9 226 51-292 15-257 (452)
23 PRK11021 putative transporter; 98.8 1E-06 2.2E-11 87.0 20.9 222 52-290 3-231 (410)
24 TIGR00905 2A0302 transporter, 98.7 2.6E-06 5.7E-11 85.8 20.7 235 49-296 8-258 (473)
25 TIGR00906 2A0303 cationic amin 98.6 5.4E-06 1.2E-10 85.3 19.9 233 48-294 28-289 (557)
26 PF13520 AA_permease_2: Amino 98.6 2.9E-06 6.2E-11 84.0 17.3 233 51-299 2-249 (426)
27 TIGR03810 arg_ornith_anti argi 98.5 1.1E-05 2.3E-10 81.3 21.0 233 51-296 4-254 (468)
28 PRK10580 proY putative proline 98.5 1.9E-05 4.2E-10 79.2 22.6 226 50-290 11-253 (457)
29 PRK11387 S-methylmethionine tr 98.5 1.7E-05 3.7E-10 79.9 20.8 62 235-296 204-266 (471)
30 PRK15049 L-asparagine permease 98.5 2.7E-05 5.8E-10 79.2 22.0 232 51-296 31-280 (499)
31 PRK11049 D-alanine/D-serine/gl 98.5 1.9E-05 4.1E-10 79.6 20.8 230 48-292 20-267 (469)
32 PRK10197 gamma-aminobutyrate t 98.4 3.7E-05 8.1E-10 77.0 21.8 214 60-290 4-235 (446)
33 TIGR00908 2A0305 ethanolamine 98.4 2E-05 4.3E-10 78.7 19.5 55 235-289 189-244 (442)
34 PRK11357 frlA putative fructos 98.4 2.4E-05 5.3E-10 78.1 20.2 230 49-292 9-251 (445)
35 PRK10249 phenylalanine transpo 98.4 3.3E-05 7.1E-10 77.6 21.0 231 51-296 24-269 (458)
36 TIGR00930 2a30 K-Cl cotranspor 98.4 7.9E-06 1.7E-10 88.6 16.3 217 57-290 86-334 (953)
37 TIGR00913 2A0310 amino acid pe 98.4 4.5E-05 9.7E-10 76.9 20.6 227 51-290 5-251 (478)
38 PRK10238 aromatic amino acid t 98.4 4E-05 8.6E-10 77.0 19.3 221 52-287 16-251 (456)
39 PRK10746 putative transport pr 98.3 0.00019 4.2E-09 72.2 23.4 227 51-292 13-256 (461)
40 TIGR00911 2A0308 L-type amino 98.3 4.9E-05 1.1E-09 77.2 19.2 237 46-296 40-295 (501)
41 PRK10836 lysine transporter; P 98.3 0.00016 3.5E-09 73.2 21.3 231 51-295 18-264 (489)
42 KOG1287 Amino acid transporter 98.2 3E-05 6.4E-10 77.2 13.5 226 57-295 21-263 (479)
43 COG0531 PotE Amino acid transp 98.1 0.00077 1.7E-08 67.1 21.7 63 236-298 200-263 (466)
44 KOG3832 Predicted amino acid t 98.0 5.4E-05 1.2E-09 66.8 9.9 47 57-103 19-65 (319)
45 PF00324 AA_permease: Amino ac 97.9 0.00014 2.9E-09 73.5 13.2 225 60-299 7-263 (478)
46 TIGR03428 ureacarb_perm permea 97.8 0.0048 1E-07 62.3 22.8 61 237-297 213-274 (475)
47 PRK15238 inner membrane transp 97.7 0.0054 1.2E-07 62.3 20.2 54 238-291 212-266 (496)
48 COG1113 AnsP Gamma-aminobutyra 97.6 0.0055 1.2E-07 60.6 18.1 226 57-299 22-271 (462)
49 TIGR00910 2A0307_GadC glutamat 97.6 0.0057 1.2E-07 62.4 18.9 49 241-289 198-247 (507)
50 KOG1286 Amino acid transporter 97.4 0.00055 1.2E-08 70.2 8.8 218 60-290 42-286 (554)
51 TIGR03813 put_Glu_GABA_T putat 97.1 0.04 8.6E-07 55.6 18.8 54 245-298 202-256 (474)
52 COG0833 LysP Amino acid transp 97.0 0.031 6.6E-07 56.6 15.6 214 57-284 53-282 (541)
53 TIGR00907 2A0304 amino acid pe 96.8 0.14 3E-06 51.7 19.6 59 238-296 218-277 (482)
54 COG1457 CodB Purine-cytosine p 96.7 0.22 4.8E-06 49.7 19.0 191 128-327 85-283 (442)
55 TIGR00800 ncs1 NCS1 nucleoside 96.5 0.36 7.8E-06 48.3 19.4 181 127-309 79-284 (442)
56 COG3949 Uncharacterized membra 96.2 0.17 3.8E-06 48.2 14.1 123 57-197 10-138 (349)
57 PRK11375 allantoin permease; P 95.7 1.2 2.6E-05 45.3 18.8 64 237-300 227-295 (484)
58 TIGR00835 agcS amino acid carr 95.6 0.19 4.1E-06 50.0 12.6 60 50-110 47-107 (425)
59 KOG1289 Amino acid transporter 95.6 2.1 4.5E-05 43.7 19.7 65 235-299 250-315 (550)
60 PF02554 CstA: Carbon starvati 94.9 0.61 1.3E-05 45.3 12.9 81 53-149 55-139 (376)
61 COG0591 PutP Na+/proline sympo 94.3 7.1 0.00015 39.8 22.3 136 59-205 49-186 (493)
62 PRK09442 panF sodium/panthothe 94.1 7.6 0.00016 39.3 22.1 80 125-205 109-189 (483)
63 TIGR02119 panF sodium/pantothe 93.8 8.1 0.00018 38.9 20.8 80 125-205 108-188 (471)
64 TIGR02358 thia_cytX probable h 92.9 8.6 0.00019 37.8 17.4 168 126-297 60-233 (386)
65 PRK11017 codB cytosine permeas 92.3 9.1 0.0002 37.9 16.7 168 126-297 73-244 (404)
66 TIGR00796 livcs branched-chain 91.9 14 0.0003 36.4 17.4 207 58-291 3-240 (378)
67 COG1966 CstA Carbon starvation 90.7 2.3 5E-05 43.4 10.4 76 55-146 57-136 (575)
68 PRK15015 carbon starvation pro 90.3 1.5 3.2E-05 45.7 8.9 74 57-146 90-167 (701)
69 PF01235 Na_Ala_symp: Sodium:a 88.2 17 0.00036 36.3 14.3 86 49-140 18-104 (416)
70 TIGR00796 livcs branched-chain 86.6 6.3 0.00014 38.8 10.3 64 126-190 257-321 (378)
71 PF00474 SSF: Sodium:solute sy 83.3 19 0.00041 35.3 12.2 135 57-206 15-152 (406)
72 TIGR02711 symport_actP cation/ 77.8 90 0.002 32.2 19.7 79 125-204 131-210 (549)
73 TIGR00813 sss transporter, SSS 72.9 99 0.0021 30.3 19.5 81 125-206 67-148 (407)
74 PRK09395 actP acetate permease 71.7 1.3E+02 0.0028 31.1 20.7 79 125-204 133-212 (551)
75 PF05525 Branch_AA_trans: Bran 69.8 9.6 0.00021 38.1 5.7 116 62-190 208-327 (427)
76 PRK12488 acetate permease; Pro 69.5 1.4E+02 0.0031 30.8 20.6 134 56-205 75-211 (549)
77 PF02133 Transp_cyt_pur: Perme 68.8 47 0.001 32.9 10.6 39 254-292 219-257 (440)
78 COG1115 AlsT Na+/alanine sympo 66.3 98 0.0021 31.1 11.8 65 48-113 61-126 (452)
79 TIGR02121 Na_Pro_sym sodium/pr 65.6 1.6E+02 0.0034 29.8 21.1 16 125-140 105-120 (487)
80 PHA02764 hypothetical protein; 58.1 50 0.0011 31.9 7.7 89 39-140 4-93 (399)
81 COG5264 VTC1 Vacuolar transpor 53.3 1.3E+02 0.0027 24.7 9.1 56 45-103 27-84 (126)
82 PRK15419 proline:sodium sympor 48.8 3E+02 0.0066 27.9 20.8 80 125-205 109-191 (502)
83 COG1953 FUI1 Cytosine/uracil/t 43.4 3.8E+02 0.0082 27.4 17.7 147 179-326 176-335 (497)
84 TIGR03648 Na_symport_lg probab 39.4 4.5E+02 0.0097 27.1 20.3 26 56-81 40-66 (552)
85 KOG2466 Uridine permease/thiam 39.3 4.5E+02 0.0097 27.1 12.0 135 173-309 183-331 (572)
86 PF01566 Nramp: Natural resist 37.6 3.8E+02 0.0082 25.7 17.9 71 127-199 45-118 (358)
87 PRK15433 branched-chain amino 36.2 92 0.002 31.3 6.2 106 72-191 225-331 (439)
88 PF03977 OAD_beta: Na+-transpo 25.5 87 0.0019 30.3 3.8 85 237-322 145-250 (360)
89 PRK13183 psbN photosystem II r 23.9 90 0.0019 20.9 2.5 28 273-300 8-35 (46)
90 PF02468 PsbN: Photosystem II 22.4 81 0.0018 20.9 2.1 25 276-300 8-32 (43)
91 KOG4580 Component of vacuolar 22.2 4.1E+02 0.009 21.2 9.1 56 45-103 12-69 (112)
92 PHA02680 ORF090 IMV phosphoryl 20.9 1.8E+02 0.004 22.3 4.0 52 244-296 18-70 (91)
93 TIGR01109 Na_pump_decarbB sodi 20.5 99 0.0021 29.8 3.1 74 237-311 145-236 (354)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-58 Score=461.85 Aligned_cols=337 Identities=82% Similarity=1.354 Sum_probs=301.2
Q ss_pred CCchhhhhHHHhhcccccccCCCCCCCCcchhhhhhhhhhhhccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhch
Q 019025 1 MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGM 80 (347)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~ 80 (347)
|.++++.|++.+++..|.|++.+++.+ +. +..+++.+.|+..|||+|.++||+|++|+++|+|+|+||+||+++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~ 76 (473)
T PLN03074 1 MMAGKQAETAIVGNYVEMEVEGGGEKE--EG--GGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGM 76 (473)
T ss_pred CCCccccchhHhhccchhccccccccc--cC--CCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccH
Confidence 567788899999988888865322211 11 12356778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccchhhhhhhHHHHHHHHHHHHHHh
Q 019025 81 LSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA 160 (347)
Q Consensus 81 v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~ 160 (347)
++|+++++++++++.||+++++++|.|+++|+++++.+|++++.+|.|+++..+||+|+++...+++.+.+++|++|++.
T Consensus 77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~ 156 (473)
T PLN03074 77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIA 156 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999988888888999989999999999999999986666776666669999999
Q ss_pred hcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHH
Q 019025 161 CASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240 (347)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f 240 (347)
++++++++|+..++|.|+++++++++|++++|++|++|++|.+|..+++++++++++..+.++++++++++.|.++..+|
T Consensus 157 ~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f 236 (473)
T PLN03074 157 CASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYF 236 (473)
T ss_pred HhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999998888777777777777777777777677788999
Q ss_pred hhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHH
Q 019025 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVI 320 (347)
Q Consensus 241 ~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~i 320 (347)
+++++++|+|+||+++|||+++||||+||++++..++.+++++|+.+|+.|||+|||++.++++++.|+|++.+++++++
T Consensus 237 ~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~ 316 (473)
T PLN03074 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI 316 (473)
T ss_pred HHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998755788999998778999999
Q ss_pred HHHHHhhcccceeEEEEechhhhhh
Q 019025 321 LMLIHQVQFQFTFIGFTDLPLLEQL 345 (347)
Q Consensus 321 l~~i~~~~~~~~s~~l~~~P~~q~~ 345 (347)
+++++++ ++|+++++|+++..
T Consensus 317 ~~~i~~~----~sy~l~~~p~~~~~ 337 (473)
T PLN03074 317 LMLIHQF----ITFGFACTPLYFVW 337 (473)
T ss_pred HHHHHHH----HHHHHHHhhHHHHH
Confidence 9999999 99999999998863
No 2
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-49 Score=390.06 Aligned_cols=289 Identities=28% Similarity=0.422 Sum_probs=250.8
Q ss_pred hccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 019025 42 MKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKN 121 (347)
Q Consensus 42 ~~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~ 121 (347)
....-++++|.++|++|.++.++|.|+|+||||++|+||++|++++++.++++.||+++|.+||.+++.+.++++.
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~---- 105 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRY---- 105 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCC----
Confidence 3445688899999999999999999999999999999999999999999999999999999999888777765532
Q ss_pred hhhcHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc------cc-ccccchhhHhHHHHHHHhhccCC
Q 019025 122 HVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI------ND-RLDKRTWTYIFGACCATTVFIPS 193 (347)
Q Consensus 122 ~~~~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~------~~-~~~~~~~~~i~~~~~~pl~~i~s 193 (347)
.|.|+++++||+++ +..+...+...+|| |+.|++..++|+..+ ++ ..+++.|+++++++++|++|+||
T Consensus 106 ---~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 106 ---RYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred ---ChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCC
Confidence 37899999999988 54477888888998 688999888888642 44 56688999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCC---CCC--CCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc
Q 019025 194 FHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEG---ASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 268 (347)
Q Consensus 194 l~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~---v~~--~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~ 268 (347)
+++++++|..|.++++..+++.++.++.+|.... .++ ..+.... |+++|++.|+|+||+++||||++||+|++
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~--f~a~g~iaFaf~gH~v~peIq~tMk~p~~ 259 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTV--FTALGIIAFAYGGHAVLPEIQHTMKSPPK 259 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcch--hhhhhheeeeecCCeeeeehHhhcCCchh
Confidence 9999999999999987655566677777764321 122 2222212 89999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCC-CchHHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025 269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP-KNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI 346 (347)
Q Consensus 269 f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp-~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~ 346 (347)
|+|++..++.+++.+|+++++.|||+|||+++ +|++.|++ +.++++.+++++.+|++ .+|+++++|++|.+.
T Consensus 260 f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~--~~il~s~~~p~~~~~~ani~i~~h~i----~s~~i~a~pl~~~~E 332 (437)
T KOG1303|consen 260 FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP--DNILLSLQPPTWLIALANILIVLHLI----GSYQIYAQPLFDVVE 332 (437)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc--hhhhhcccCchhHHHHHHHHHHHHHh----hhhhhhhcchHHHHH
Confidence 99999999999999999999999999999997 49999995 77889999999999999 999999999999864
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-45 Score=353.93 Aligned_cols=296 Identities=19% Similarity=0.177 Sum_probs=243.8
Q ss_pred ccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccch
Q 019025 43 KSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH 122 (347)
Q Consensus 43 ~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~ 122 (347)
.+...|+.|..++..|+.|+++|+|+|+||+||+++||+.|.+..++.+.++.|+.+++++|.++.++|..++..+|.+.
T Consensus 40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~ 119 (449)
T KOG1304|consen 40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET 119 (449)
T ss_pred cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence 44556789999999999999999999999999999999999999999999999999999999888888776665555432
Q ss_pred hhcHHHH---hHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-----ccccccchhhHhHHHHHHHhhccCC
Q 019025 123 VIQWFEV---LDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-----NDRLDKRTWTYIFGACCATTVFIPS 193 (347)
Q Consensus 123 ~~~y~ev---~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-----~~~~~~~~~~~i~~~~~~pl~~i~s 193 (347)
+.+-.|- ..+.+||++|.+ +.+++.+.++| |++|+++.++|++.+ ....+.|.|+.+..+.++|++++||
T Consensus 120 ~~~a~~~~~~~~r~~g~~~r~~-V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 120 AESAMEGGPGWLRKYGPAARFV-VNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HHHHHcCCcHHHHhhcHHHHHH-HHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 2111111 133456655555 77788888888 899999999999765 2456889999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccch---
Q 019025 194 FHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK--- 270 (347)
Q Consensus 194 l~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~--- 270 (347)
++.|+++|+++.+..+. ++.++.....++.++..+.+.-.++.++...+|+.+|||+|++++.|++++||+|++|+
T Consensus 199 Lk~Lsp~Sl~Anv~~~~-g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~ 277 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILV-GLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPF 277 (449)
T ss_pred hHHhhHHHHHHHHHHHH-HHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCcc
Confidence 99999999999886443 33333444443332211222223467777888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025 271 YIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI 346 (347)
Q Consensus 271 ~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~ 346 (347)
+++..+|.+++++|..+|.+||++|||+++ +.|+.|+|++++.+.+++++++..+ +|||+|++|..|.+.
T Consensus 278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~--~sITLNLP~~~l~~~Vkl~~ai~I~----ls~pLQ~yv~~eIi~ 347 (449)
T KOG1304|consen 278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVK--GSITLNLPQEILSQTVKLLLAIAIF----LTYPLQFYVPIEIIE 347 (449)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccc--ceEEecCCccHHHHHHHHHHHHHHH----HcCchhhhhhHHHHH
Confidence 999999999999999999999999999997 5999999999999999999999999 999999999998763
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-41 Score=340.51 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=224.6
Q ss_pred ccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhh
Q 019025 45 FLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124 (347)
Q Consensus 45 ~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~ 124 (347)
..-++|++.+|.+|++|+++|+|+|+||+||+++||++|++++++.+.++.||.+++.++. ++.+ ..
T Consensus 55 ~~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~----~~~~---------~~ 121 (467)
T PTZ00206 55 TIIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAA----DKTN---------IR 121 (467)
T ss_pred hccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCC---------CC
Confidence 3467788999999999999999999999999999999999999999999999999997652 2111 11
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccc----------cccccc-hhhHhHHHHHHHhhccC
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIN----------DRLDKR-TWTYIFGACCATTVFIP 192 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~----------~~~~~~-~~~~i~~~~~~pl~~i~ 192 (347)
+|+|++++++||+++.+ +.+.+.+.++| |+.|++..+|++...- ...++| .|.+++.++++|++++|
T Consensus 122 sY~~la~~~~G~~g~~~-v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r 200 (467)
T PTZ00206 122 TYEGVARVLLGPWGSYY-VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPR 200 (467)
T ss_pred CHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhccccc
Confidence 68999999999988876 77777778888 7889998888765321 111233 34455667899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC---CCC---c-----hhHHHHHhhhhhHHHhcccccchHhHHH
Q 019025 193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS---HTA---P-----TKLVLYFTGATNILYTFGGHAVTVEIMH 261 (347)
Q Consensus 193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~---~~~---p-----~~~~~~f~a~g~i~faF~gh~~~~~I~~ 261 (347)
+++++|++|.+|+++.+|.++.+++.+..++.+++.+ ... + +...+++.++|+++|||.||.+.||+++
T Consensus 201 ~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~ 280 (467)
T PTZ00206 201 HIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYM 280 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHH
Confidence 9999999999999877766544444555444333221 110 0 1123578899999999999999999999
Q ss_pred hcCCC--ccchhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccC-CC-chHHHHHHHHHHHHhhcccceeEEEE
Q 019025 262 AMWKP--QKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL-PK-NRWRDAAVILMLIHQVQFQFTFIGFT 337 (347)
Q Consensus 262 ~M~~P--~~f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~l-p~-~~~~~~a~il~~i~~~~~~~~s~~l~ 337 (347)
|||+| +|+.++...++.+++++|..+|++||++|||+++ +|++.|+ |. +....++++.+.++++ .+||++
T Consensus 281 ~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~--~~Illn~~p~~~~~~~v~~~~~~~~v~----~sypL~ 354 (467)
T PTZ00206 281 DMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVT--GSVLLMYDPVNEPAIMVGFVGVLVKLF----VSYALL 354 (467)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc--hHHHHhCCCCCCchhhHHHHHHHHHHH----Hhhhhh
Confidence 99984 5788899999999999999999999999999995 6999999 53 4567788888999999 999999
Q ss_pred echhhhhh
Q 019025 338 DLPLLEQL 345 (347)
Q Consensus 338 ~~P~~q~~ 345 (347)
++|+++.+
T Consensus 355 ~~p~r~~i 362 (467)
T PTZ00206 355 GMACRNAL 362 (467)
T ss_pred hhhHHHHH
Confidence 99988754
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=9.8e-42 Score=334.69 Aligned_cols=283 Identities=23% Similarity=0.346 Sum_probs=232.8
Q ss_pred cCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (347)
Q Consensus 48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (347)
|++|.+++.+|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.+++.+.+ +++ + ..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~-~-------~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGT-G-------RRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccc-c-------ccccc
Confidence 78999999999999999999999999999999999999999999999999999988743222 111 1 11578
Q ss_pred HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccccc------ccccchhhHhHHHHHHHhhccCCCCchhHH
Q 019025 128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIND------RLDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (347)
Q Consensus 128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~------~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~ 200 (347)
|++++++||+++++ ..+++...++| ++.|++..++++..+.+ ..++..|.+++.++++|++++|+++++++.
T Consensus 72 ~l~~~~~G~~~~~~-~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~ 150 (409)
T PF01490_consen 72 DLARRAFGPKGKWF-VDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYL 150 (409)
T ss_pred cccccccccccccc-ccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHH
Confidence 99999999999876 66666667777 68899888888875422 346677888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--cccCCCCCCC---CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccch---hH
Q 019025 201 SFLGLGMTTYTAWYLTIAAVV--HGQVEGASHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---YI 272 (347)
Q Consensus 201 S~~g~~~~~~~~~~i~v~~~~--~g~~~~v~~~---~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~---~v 272 (347)
|.+|.++.++........... .+++.+.++. .+.++.+++.++|+++|+|+||.++||+++|||+|++++ ++
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~ 230 (409)
T PF01490_consen 151 SILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKV 230 (409)
T ss_pred hhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccccee
Confidence 999998766421111111111 1222222222 224567899999999999999999999999999999988 88
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCch-HHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR-WRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI 346 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~-~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~ 346 (347)
...++.+++++|+.+|++||++|||+++ +|++.|+|++. +..++++++.++++ .+||++++|.++.+.
T Consensus 231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~--~~il~n~~~~~~~~~i~~~~~~i~~~----~s~pl~~~p~~~~l~ 299 (409)
T PF01490_consen 231 LSISMIICFIIYLLFGIFGYLAFGDSVQ--GNILLNLPNDDVLIIIARILLVISLL----LSYPLQLFPARNSLE 299 (409)
T ss_pred eeehhhhhhHHhhhhhhcccceeeeeec--chhhhcCCCcccccccccccchhhhh----hccccccchhHhhhh
Confidence 9999999999999999999999999996 59999999875 88999999999999 999999999998764
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-32 Score=252.60 Aligned_cols=282 Identities=12% Similarity=0.167 Sum_probs=233.6
Q ss_pred CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (347)
Q Consensus 49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e 128 (347)
.-+.++|-+|+.|++-|.-+++||+|..+.||+ |+..++..|.+++||+++|..|. |......+-++.|+ +|-+
T Consensus 116 kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CL--YE~~~dGevVrvRd---sYva 189 (524)
T KOG4303|consen 116 KISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECL--YENGEDGEVVRVRD---SYVA 189 (524)
T ss_pred ccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhh--ccCCCCCcEEEeeh---hHHH
Confidence 347899999999999999999999999999998 99999999999999999999872 43333334456666 7999
Q ss_pred HhHhhhcccch-hhhhhhHHHH-HHHHHHHHHHhhcccccc--cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025 129 VLDGLLGPYWK-AVGLAFNCTF-LLFGSVIQLIACASNIYY--INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (347)
Q Consensus 129 v~~~~~G~~~~-~~~~~~~i~~-~~~g~v~~li~~~~~l~~--~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g 204 (347)
+++.+++|+.+ |+ +...+.. ++..|++|++.+++.++. +...++++.|+++.++..+|.+|+|+++-.+.+|+++
T Consensus 190 IA~~C~~P~lGgr~-V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c 268 (524)
T KOG4303|consen 190 IADFCYKPGLGGRW-VLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC 268 (524)
T ss_pred HHHHhcCCCcchhe-eeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999998844 55 4445544 555699999988887764 4457899999999999999999999999998899888
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCCc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHH
Q 019025 205 LGMTTYTAWYLTIAAVVHGQVEGASHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVF 281 (347)
Q Consensus 205 ~~~~~~~~~~i~v~~~~~g~~~~v~~~~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~ 281 (347)
.++-+.+..+++.+++..-. ++.++.. .+..++..++|+++|+|..|...|+++.+|++|++|..++.++-+..+
T Consensus 269 t~sH~viN~i~v~YCLs~~~--dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAa 346 (524)
T KOG4303|consen 269 TISHLVINLIMVLYCLSFVS--DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAA 346 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHH
Confidence 87766565455556665432 3333321 355677789999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhhcccceeEEEEechhhhhh
Q 019025 282 TLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQL 345 (347)
Q Consensus 282 ~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~ 345 (347)
++-..+|..+|++|||.+++ .|.+|+|+..++.+++++.++..+ .+||+-.+.+.|.+
T Consensus 347 VfK~~Fg~~~fLTf~~~Tqe--vItnnLp~qsfk~~VN~fLV~KAL----LSYPLPfyAAvelL 404 (524)
T KOG4303|consen 347 VFKVVFGMLGFLTFGELTQE--VITNNLPNQSFKILVNLFLVVKAL----LSYPLPFYAAVELL 404 (524)
T ss_pred HHHHHHHHheeeeechhhHH--HHhcCCCccchhhhhhHHHHHHHH----HcCCchHHHHHHHH
Confidence 99999999999999999975 999999998999999999999999 99987655555443
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=255.41 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=213.8
Q ss_pred cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
.|...+.+|+.|+++|+|+|++|+||++.|.+.|+++++++|.++.++.+++.++- ++.+++ +|+++
T Consensus 6 ~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a----~~~~~~---------ty~~l 72 (411)
T KOG1305|consen 6 TSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCA----KKSGER---------TYSSL 72 (411)
T ss_pred cchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh----hhcCCC---------CHHHH
Confidence 47889999999999999999999999999999999999999999999999998752 222211 48899
Q ss_pred hHhhhcccchhhhhhhHHHHHHHHHHHHHHhhccccccc-------cc---c-cccch-hhHhHHHHHHHhhccCCCCch
Q 019025 130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-------ND---R-LDKRT-WTYIFGACCATTVFIPSFHNY 197 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~~~~~l~~~-------~~---~-~~~~~-~~~i~~~~~~pl~~i~sl~~l 197 (347)
++..+|+.++ +...+.......|++.|++..+|.+..+ +. + .++.. |++....+++|+++.|++.++
T Consensus 73 ~~~~~g~~g~-~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~L 151 (411)
T KOG1305|consen 73 GDLIFGKLGK-VDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSL 151 (411)
T ss_pred HHHHcCCCce-eeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhH
Confidence 9999999874 3233332222233466776666655421 11 1 12222 577778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCCCCchh--HHHHHhhhhhHHHhcccccchHhHHHhcCCCcc--chhH
Q 019025 198 RIWSFLGLGMTTYTAWYLTIAAVVHGQ-VEGASHTAPTK--LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYI 272 (347)
Q Consensus 198 ~~~S~~g~~~~~~~~~~i~v~~~~~g~-~~~v~~~~p~~--~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~--f~~v 272 (347)
++.|.+++++..|....+.+..+.... .+......|.+ +.+.+.++|+++|+|.||.+..+|++|||+|++ ++++
T Consensus 152 k~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v 231 (411)
T KOG1305|consen 152 KYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV 231 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence 999999998877665433333333222 12222222322 257899999999999999999999999999986 7888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchH-------HHHHHHHHHHHhhcccceeEEEEechhhhhh
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW-------RDAAVILMLIHQVQFQFTFIGFTDLPLLEQL 345 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~-------~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~ 345 (347)
-..+...+.++|..+|.+||+.|||.+. +|++.+.|+..- ...++..++++.. .++|+..+|+++.+
T Consensus 232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~--~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~----l~~pi~~fPlr~~l 305 (411)
T KOG1305|consen 232 SNIAIILATLIYLLTGLFGYLTFGDLVK--GNLLHNYDSILNNLLRSFPLLCVRLRIAVAVL----LTFPIVLFPLRMNL 305 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecccch--HHHHhcCCcccchhHhhhhHHHHHHHHHHHHH----HHHHHHhchHHHHH
Confidence 8999999999999999999999999996 699999985322 4789999999999 99999999998765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=234.38 Aligned_cols=250 Identities=18% Similarity=0.235 Sum_probs=201.1
Q ss_pred CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (347)
Q Consensus 49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e 128 (347)
..|.+++.++++++.+|+|+|+||++++..|++++++++++.+.++.++.+++.+++.++ ++++. ++.+
T Consensus 8 ~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~----~~~~~-------~~~~ 76 (415)
T COG0814 8 TSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS----PNGKA-------SITS 76 (415)
T ss_pred CcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCcc-------cHHH
Confidence 446788899999999999999999999999999999999999999999999998774332 22211 3679
Q ss_pred HhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-----ccc-cccchhhHhHHHHHHHhhccCCCCchhHHH
Q 019025 129 VLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-----NDR-LDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (347)
Q Consensus 129 v~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-----~~~-~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S 201 (347)
++++.+||+|+.+ ..+...+.+++ ++.|.+..++.+... ... .+++.+.+++.+++.++++.++...+|..|
T Consensus 77 ~~~~~~G~~~~~l-i~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts 155 (415)
T COG0814 77 LVEDYLGKKGGIL-IGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITS 155 (415)
T ss_pred HHHHHhCcchHHH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 9999999999987 67777788888 788998777776542 112 567778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCC---CCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc--chhHHHHH
Q 019025 202 FLGLGMTTYTAWYLTIAAVVHGQVE---GASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYIYLFA 276 (347)
Q Consensus 202 ~~g~~~~~~~~~~i~v~~~~~g~~~---~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~--f~~v~~~s 276 (347)
++...+..+.+++. +....+-+.. ..+...+.++.++..++|+++|||+||+++|++++||+++++ .+|+...+
T Consensus 156 ~l~~~~v~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~ 234 (415)
T COG0814 156 LLVFGKVIYLVLLV-VYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHHHHHHHHH-HHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence 99887766554321 2222221111 111111356778899999999999999999999999998765 99999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCccccccccccccCCCch
Q 019025 277 TLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR 313 (347)
Q Consensus 277 ~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~ 313 (347)
..+..++|+.++.++|..+|+.+. +|++++.|++.
T Consensus 235 ~~~~~vlyi~~~~~~~~~~~~~~~--~~il~~~~~~~ 269 (415)
T COG0814 235 SLIALVLYILVGFFVFGCFGSLVF--GNILAAKEQNI 269 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccH--HHHHHccCchH
Confidence 999999999999999999999996 59999998654
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.70 E-value=4.4e-16 Score=152.46 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=156.5
Q ss_pred cCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025 48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (347)
Q Consensus 48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (347)
+.++.+.+.+-+..+.||+|+|+||++.++.|+.+++++++++++.+.||+.++.+.. .+.++ +. ++.
T Consensus 9 ~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~----l~~~~-g~-------~~~ 76 (414)
T PRK10483 9 TSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEAN----LNYRI-GS-------SFD 76 (414)
T ss_pred CCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-CC-------CHH
Confidence 4567778889999999999999999999999999999999999999999999997653 22221 22 467
Q ss_pred HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc----ccccccchhhHhHHHHHHHhhccCCCCchhHHHH
Q 019025 128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI----NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 202 (347)
Q Consensus 128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~----~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~ 202 (347)
.++++.+||+|+.+ ..++..+++|+ .+.|+...++.+... +.+.+++.-.++|.++...+++..+ +...+.+-
T Consensus 77 tma~~~LG~~g~~i-~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n~ 154 (414)
T PRK10483 77 TITKDLLGKGWNVV-NGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMTA 154 (414)
T ss_pred HHHHHHcChHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHH
Confidence 89999999998875 45666667777 567876666555432 1123444445677777777777643 33333332
Q ss_pred HHHHHHHHHHHHHHHhhhhcc-cCCC---CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHH
Q 019025 203 LGLGMTTYTAWYLTIAAVVHG-QVEG---ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFAT 277 (347)
Q Consensus 203 ~g~~~~~~~~~~i~v~~~~~g-~~~~---v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~ 277 (347)
+=.. .....+.+.+..+... +.+. .+.+.+..+...+.++|++++||+.|.++|++.+.+++ ++|.+|++..+.
T Consensus 155 ~l~~-~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs 233 (414)
T PRK10483 155 IVLG-AKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGT 233 (414)
T ss_pred HHHH-HHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHH
Confidence 2111 1111111222222211 1111 11122233456788999999999999999999999985 678999999999
Q ss_pred HHHHHHHhhhhhhh
Q 019025 278 LYVFTLTIPSATAV 291 (347)
Q Consensus 278 ~~~~~ly~~~g~~g 291 (347)
.+.+++|+.-=...
T Consensus 234 ~Iplv~yl~W~~~~ 247 (414)
T PRK10483 234 LMALALYTIWLLAT 247 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998843333
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.65 E-value=5.1e-15 Score=144.91 Aligned_cols=222 Identities=15% Similarity=0.153 Sum_probs=146.9
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
+.+.+.+-++.+.||+|+|+||++.++.|+.+++++++++++.+.||+.++.+.. .+.++ +. +...++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~----l~~~~-g~-------~l~tma 77 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEAN----LNYPV-GS-------SFNTIT 77 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-CC-------CHHHHH
Confidence 4555568899999999999999999999999999999999999999999997653 22221 22 356899
Q ss_pred HhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-cc----ccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-ND----RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-~~----~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g 204 (347)
++.+||+|+.+ ..++..+++|+ ++.|+...++.+... ++ +.+++.-.++|.++..++++..+ +...+.+-+=
T Consensus 78 ~~~LG~~g~~i-~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l 155 (415)
T PRK09664 78 KDLIGNTWNII-SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLF 155 (415)
T ss_pred HHHcChHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHH
Confidence 99999998876 55566667777 567776655555432 11 23334445677777777777664 3333332211
Q ss_pred HHHHHHHHHHHHHhhhh-cccCCCCCC-C---Cc-hhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHH
Q 019025 205 LGMTTYTAWYLTIAAVV-HGQVEGASH-T---AP-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFAT 277 (347)
Q Consensus 205 ~~~~~~~~~~i~v~~~~-~g~~~~v~~-~---~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~ 277 (347)
.. ....++.+.+.... +-+.+.... + .. ..+...+.++|++++||+.|.++|++.+.+++ ++|.++.+..+.
T Consensus 156 ~~-~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs 234 (415)
T PRK09664 156 LG-LKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGS 234 (415)
T ss_pred HH-HHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHH
Confidence 11 11111111122221 111111111 1 00 11345778999999999999999999999985 567888888888
Q ss_pred HHHHHHHhhh
Q 019025 278 LYVFTLTIPS 287 (347)
Q Consensus 278 ~~~~~ly~~~ 287 (347)
.+..++|++.
T Consensus 235 ~IpLviY~~W 244 (415)
T PRK09664 235 LLALVIYLFW 244 (415)
T ss_pred HHHHHHHHHH
Confidence 8888888544
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.63 E-value=1.8e-14 Score=141.49 Aligned_cols=224 Identities=13% Similarity=0.190 Sum_probs=146.7
Q ss_pred cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
.+.+.+.+-++.+.+|+|+|+||++.+..|++++++++++.+.++.+|..++.++. .+.++ +. ++.++
T Consensus 3 ~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~----~~~~~-~~-------~~~~~ 70 (394)
T PF03222_consen 3 NSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVS----LNTPE-GS-------SLTSM 70 (394)
T ss_pred chHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCC-CC-------CHHHH
Confidence 35677888899999999999999999999999999999999999999999987653 22221 12 47799
Q ss_pred hHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc----c-cccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI----N-DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~----~-~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
+++.+||+|+.+ ..+...+..|+ .+.|....++.+... + .+.+++.-..++.+++..+.+..+ +.....+-+
T Consensus 71 a~~~lG~~g~~~-~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~-~~v~~~n~~ 148 (394)
T PF03222_consen 71 AEKYLGKKGGIV-IGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT-KAVDRINRV 148 (394)
T ss_pred HHHHhChHHHHH-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 999999999986 44454555666 466776555544332 1 122333333444444444444332 111122111
Q ss_pred HHHHHHHHHHHHHHhh-hhcccCCCCCC--CCchhHHHHHhhhhhHHHhcccccchHhHHHhcC-CCccchhHHHHHHHH
Q 019025 204 GLGMTTYTAWYLTIAA-VVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLY 279 (347)
Q Consensus 204 g~~~~~~~~~~i~v~~-~~~g~~~~v~~--~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~-~P~~f~~v~~~s~~~ 279 (347)
-.. .....+...+.. +.+-+.+...+ +.+.++...+.++|++++||+.|.++|++.+.++ |++|.+|++..+..+
T Consensus 149 lv~-~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 149 LVF-GMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHH-HHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 111 011111111111 11111122222 2245678888999999999999999999999999 578899999999998
Q ss_pred HHHHHhhhh
Q 019025 280 VFTLTIPSA 288 (347)
Q Consensus 280 ~~~ly~~~g 288 (347)
..++|++.-
T Consensus 228 ~lv~yl~w~ 236 (394)
T PF03222_consen 228 PLVMYLLWV 236 (394)
T ss_pred HHHHHHHHH
Confidence 888887653
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.61 E-value=2.1e-14 Score=140.96 Aligned_cols=232 Identities=15% Similarity=0.190 Sum_probs=150.7
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
+.+.+.+.+..+.||+|+|+||.+.+..|++++++++++++.+..|+++++.++. .+.+ ++. ++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~----~~~~-~~~-------~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVY----QHVP-ADT-------GLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCC-CCC-------CHHHHH
Confidence 5677889999999999999999999999999999999999999999999986542 2222 222 357999
Q ss_pred HhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccc-----cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g 204 (347)
++.+||+|+.+ ..+...+..|. ++.|...+++.+.. ++...+...+.++|.++.....+..+ +...+.+-+
T Consensus 72 ~~~LG~~g~~i-~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~-~~v~~~n~~- 148 (403)
T PRK15132 72 KRYLGRYGQWL-TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT-SSVDLFNRF- 148 (403)
T ss_pred HHHhChHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH-HHHHHHHHH-
Confidence 99999999986 44555556666 57788765554432 12233444566666655554555443 222222211
Q ss_pred HHHHHHHHHHHHHhhhhcc-cCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHHHHHHH
Q 019025 205 LGMTTYTAWYLTIAAVVHG-QVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFT 282 (347)
Q Consensus 205 ~~~~~~~~~~i~v~~~~~g-~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~~~~~~ 282 (347)
.+......+...+..+... +.++... .|.+....+.++|++++||+.|.++|++.+.+++ ++|.+|++..+..+.++
T Consensus 149 L~~~~ii~~~~~~~~l~p~~~~~~L~~-~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li 227 (403)
T PRK15132 149 LFSAKIIFLVVMLALMMPHIHKVNLLT-LPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLV 227 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHhc-CCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 0100111111111111111 1111111 1111123678899999999999999999999985 67789999999999999
Q ss_pred HHhhhhhhhhhhcCcc
Q 019025 283 LTIPSATAVYWSFGDQ 298 (347)
Q Consensus 283 ly~~~g~~gY~afG~~ 298 (347)
+|+.-=......-+.+
T Consensus 228 ~yl~W~~~~lg~l~~~ 243 (403)
T PRK15132 228 AYIFWQLATLGSIDST 243 (403)
T ss_pred HHHHHHHHHHhCCCHH
Confidence 9887766555544433
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.59 E-value=1.9e-14 Score=140.65 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=148.3
Q ss_pred HHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhccc
Q 019025 58 SCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPY 137 (347)
Q Consensus 58 nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~ 137 (347)
..+++++|+|++++|.++++.|+.++.+.+++.++++.+++.++.++ ..+.++++ ++.|.+++++||+
T Consensus 5 lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el----~~~~p~~~--------~~~~~~~~~~G~~ 72 (381)
T TIGR00837 5 IIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEV----YLTYPGGA--------SFNTIAKDLLGKT 72 (381)
T ss_pred EeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCC--------CHHHHHHHHhCHH
Confidence 45689999999999999999999999999999999999999887654 34443221 3679999999998
Q ss_pred chhhhhhhHHHHHHHH-HHHHHHhhcccccc-----cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 019025 138 WKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYT 211 (347)
Q Consensus 138 ~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~ 211 (347)
++.+ ......+.++. ++.|.+..++.+.. .+...+.+.+.+++.+++.++.+. ..+...+++.+.....+..
T Consensus 73 ~g~~-~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 73 GNII-AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWL-STSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHH
Confidence 8865 44445445555 45566544444322 122223333344444455555544 3466666655544432221
Q ss_pred HHHHHHhhhhcccCCCC-CC-CCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHHHHHHHHHhhhh
Q 019025 212 AWYLTIAAVVHGQVEGA-SH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFTLTIPSA 288 (347)
Q Consensus 212 ~~~i~v~~~~~g~~~~v-~~-~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~~~~~~ly~~~g 288 (347)
...+.+....+.+.++. +. ..+..+.+.+.+++...++|++|.+++++.++++| ++|.+|.+..+..+++++|+.+.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222322221111 10 11234567788999999999999999999999974 55689999999999999999887
Q ss_pred hhhhhhcCcc
Q 019025 289 TAVYWSFGDQ 298 (347)
Q Consensus 289 ~~gY~afG~~ 298 (347)
....-..+.+
T Consensus 231 ~~~~g~~~~~ 240 (381)
T TIGR00837 231 LATMGNLPRS 240 (381)
T ss_pred HHHhCCCCHH
Confidence 6666555443
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.36 E-value=4.7e-11 Score=117.49 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=141.9
Q ss_pred HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcc
Q 019025 57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 136 (347)
Q Consensus 57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~ 136 (347)
+.+..+.||+|+|+||......|.++.++++++...++.|+...+.+.. .+.++++. ++.|++++.+||
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~----L~~~~~~~-------~i~~v~~~~lG~ 94 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLC----LSGSNPSG-------NITETVEEHFGK 94 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCCCCC-------CHHHHHHHHcCh
Confidence 6788999999999999999999999999999999999999999886542 22211222 367999999999
Q ss_pred cchhhhhhhHHHHHHHH-HHHHHHhhcccccc-----ccc-ccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025 137 YWKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----IND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT 209 (347)
Q Consensus 137 ~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~-~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~ 209 (347)
+|+.+ ..+...+.+|. +.+|.....+.+.. ++- ..++....+++.+++....+..+ +..-+++-+ ++...
T Consensus 95 ~g~~i-~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~-Lv~~~ 171 (443)
T PRK13629 95 TGGVV-ITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSY-LVWPF 171 (443)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH-HHHHH
Confidence 99986 44444444554 45666544433322 111 22333334455555555555443 222222211 11111
Q ss_pred HHHHHHHHhhhhccc-CCCC---CC-----CCc-hhHHHHHhhhhhHHHhcccccchHhHHHh----cC-----C--Ccc
Q 019025 210 YTAWYLTIAAVVHGQ-VEGA---SH-----TAP-TKLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K--PQK 268 (347)
Q Consensus 210 ~~~~~i~v~~~~~g~-~~~v---~~-----~~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~----M~-----~--P~~ 268 (347)
..++.+....+.... .++. +. .+. ......+.++|++++||+-|+++|++... ++ + ++|
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 111111111221111 0111 10 001 11235778999999999999999999998 43 3 455
Q ss_pred chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025 269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 269 f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~ 299 (347)
-++++..+..+.+++|+..-..+-..-+++-
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~ 282 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQN 282 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7788999999889999888777777666544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.27 E-value=2.2e-10 Score=112.60 Aligned_cols=232 Identities=10% Similarity=0.016 Sum_probs=133.9
Q ss_pred HHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025 56 WFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (347)
Q Consensus 56 ~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G 135 (347)
.+.+..+++|+|+|.||...++.||++.++..++...++.++..++.+.+ ...+.++. ++.|++++.+|
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~----l~~~~p~~-------~i~~~~~~~fG 77 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFL----LSSKNPCE-------DITEVVEEHFG 77 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCC-------CHHHHHHHHcC
Confidence 35678899999999999999999999888888887778888888776542 22222222 35799999999
Q ss_pred ccchhhhhhhHHHHHHH-HHHHHHHhhcccccc-cc----cccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025 136 PYWKAVGLAFNCTFLLF-GSVIQLIACASNIYY-IN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT 209 (347)
Q Consensus 136 ~~~~~~~~~~~i~~~~~-g~v~~li~~~~~l~~-~~----~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~ 209 (347)
|+++.+ ..+...+..+ .+..|.....+.+.. +. .+...+.+..+..++++-.......+.+..++-+-....+
T Consensus 78 k~~G~i-i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 78 KNWGIL-ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 998876 3333333223 245555444333221 11 1112232221111222122222234444444333221111
Q ss_pred HHHHHHHHhhhhcccCCCCCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHh----cCC----CccchhHHHHHHHH
Q 019025 210 YTAWYLTIAAVVHGQVEGASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWK----PQKFKYIYLFATLY 279 (347)
Q Consensus 210 ~~~~~i~v~~~~~g~~~~v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~----M~~----P~~f~~v~~~s~~~ 279 (347)
.....+.+..+.+-+.++....+ ...+.+++.+++..++||++|.++++...+ .++ ++|.+|++..+..+
T Consensus 157 i~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i 236 (397)
T TIGR00814 157 LILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLI 236 (397)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 11111111222121111111111 123567889999999999999999999833 442 34568889999888
Q ss_pred HHHHHhhhhhhhhhhcCccc
Q 019025 280 VFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 280 ~~~ly~~~g~~gY~afG~~~ 299 (347)
.+++|+..-...-...+++.
T Consensus 237 ~~~~y~~~~~s~~~~l~~~~ 256 (397)
T TIGR00814 237 LVATVMFFVFSCVLSLSPAE 256 (397)
T ss_pred HHHHHHHHHHHHhccCCHHH
Confidence 88888888777777776654
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.03 E-value=1.1e-08 Score=99.15 Aligned_cols=233 Identities=17% Similarity=0.138 Sum_probs=129.2
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
|.+|..+-+..+++|+|++.+|...++.+--.+.+..++.+++......++.++ .++.|++ +..|..
T Consensus 4 s~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l----~~~~p~~---------~~~~~~ 70 (359)
T TIGR00912 4 SSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKI----MSKFPEK---------NFSEIL 70 (359)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHH----HHHCCCC---------CHHHHH
Confidence 567888888999999999999998776442234445555566666666655443 3444422 245889
Q ss_pred HhhhcccchhhhhhhHH-HHHHHHHHHHHHhhcccccc-cccccccchhhHhHH-HHHHHhhccCCCCchhHHHHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIYY-INDRLDKRTWTYIFG-ACCATTVFIPSFHNYRIWSFLGLGM 207 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i-~~~~~g~v~~li~~~~~l~~-~~~~~~~~~~~~i~~-~~~~pl~~i~sl~~l~~~S~~g~~~ 207 (347)
++++||+.+.+ ..... .+....+...+-..++.+.. +.+ +...|.+... ++..-....+.++....++.+-...
T Consensus 71 ~~~~Gk~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 71 SKYLGKILGRL-LSILFILYFFLIAAYLIRIFADFIKTYLLP--RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 99999987775 22221 11111121111112222211 111 2233432221 1111122224455554444433222
Q ss_pred HHHHHHHHHHhhhh-c-ccCCCCCCCCchhHHHHHhhhh-hHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHH
Q 019025 208 TTYTAWYLTIAAVV-H-GQVEGASHTAPTKLVLYFTGAT-NILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLT 284 (347)
Q Consensus 208 ~~~~~~~i~v~~~~-~-g~~~~v~~~~p~~~~~~f~a~g-~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly 284 (347)
.+... .+.+.... + .+..+...-.+.++.+.+.+.- ...++|.|.....-...++|||++.+|....+...+..+|
T Consensus 148 ~i~~~-~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly 226 (359)
T TIGR00912 148 FLILF-ILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY 226 (359)
T ss_pred HHHHH-HHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 11110 01111111 1 1111111111223445555543 7889999888888899999999999999999999999999
Q ss_pred hhhhhhhhhhcCcccc
Q 019025 285 IPSATAVYWSFGDQLL 300 (347)
Q Consensus 285 ~~~g~~gY~afG~~~~ 300 (347)
...-+.....+|.+..
T Consensus 227 ~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 227 ILTTFVSISVFGGNVT 242 (359)
T ss_pred HHHHHHHHheecHHHh
Confidence 9998888888887653
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=98.89 E-value=2.3e-07 Score=92.38 Aligned_cols=227 Identities=14% Similarity=0.036 Sum_probs=119.9
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
+.++...-.+.+++|+|++.+|..+++.|-. +++..++.+++.. +...+|.|...+.|+.+-.| +-.
T Consensus 9 ~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~----~~a~~~aeL~~~~P~~GG~y--------~y~ 75 (438)
T PRK10655 9 GVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSM----ALAYAFAKCGMFSRKSGGMG--------GYA 75 (438)
T ss_pred cHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHH----HHHHHHHHHhhhCCCCCchH--------HHH
Confidence 4667778888999999999999999988852 4444444444433 33344567666666655433 455
Q ss_pred HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccc-cccccccc-hhhHhHHHHHHHhhccCCCCchhHHHHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYY-INDRLDKR-TWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~-~~~~~~~~-~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~ 207 (347)
++.+||+++.+ ....... ...+....-+...+.+.. ++...+.. .|..... +...+. .-|....|..+.+..+.
T Consensus 76 ~~~~G~~~gf~-~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 76 EYAFGKSGNFM-ANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIG-VLWLCT-VANFGGARITGQISSVT 152 (438)
T ss_pred HHHcCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HHHHHH-HHHHhCHHHHHHHHHHH
Confidence 68899987653 2222111 111111111111111111 11111111 1221111 111111 11233334433333322
Q ss_pred HH---HHHHHHHHhhhhcccCCC----CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHH
Q 019025 208 TT---YTAWYLTIAAVVHGQVEG----ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (347)
Q Consensus 208 ~~---~~~~~i~v~~~~~g~~~~----v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~ 279 (347)
.. .....+.+......++++ ++..+...+..+..++....|+|.|-.....+-+|+|||+| .+|.+..+...
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~ 232 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence 21 111111122222111111 11111112345667788899999999999999999999986 89999999999
Q ss_pred HHHHHhhhhhhhhh
Q 019025 280 VFTLTIPSATAVYW 293 (347)
Q Consensus 280 ~~~ly~~~g~~gY~ 293 (347)
+.++|++.......
T Consensus 233 ~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 233 AAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887655443
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=98.88 E-value=2.5e-07 Score=91.80 Aligned_cols=230 Identities=8% Similarity=0.049 Sum_probs=122.7
Q ss_pred cchHHHHHHHhhhhhhhhhchHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~GiLsLP~af~~-~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e 128 (347)
=+.++.+.-.+++++|.|++.+|..... .|.. ..+..++.+++....+ .++.|..++.|+.+-.| +
T Consensus 5 l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a----~~~~el~~~~p~~Gg~y--------~ 71 (429)
T TIGR00909 5 LGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIA----LVYAELAAMLPVAGSPY--------T 71 (429)
T ss_pred ccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHH----HHHHHHHhhcCCCCcce--------e
Confidence 3567777888899999999999976554 3432 3334444444443333 34456676666554333 3
Q ss_pred HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccc-c---ccccc---------chh--hHhHHHHHHHhhccC
Q 019025 129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYI-N---DRLDK---------RTW--TYIFGACCATTVFIP 192 (347)
Q Consensus 129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~-~---~~~~~---------~~~--~~i~~~~~~pl~~i~ 192 (347)
-.++.+||+.+.+ ......+ .......+....++.+..+ . ...+. ..+ ..+...+.+-..-.+
T Consensus 72 ~~~~~~G~~~g~~-~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 150 (429)
T TIGR00909 72 YAYEAMGELTAFI-IGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYL 150 (429)
T ss_pred eHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHh
Confidence 4456789887654 2222111 1111111111111111110 0 00010 011 111111122222233
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chh
Q 019025 193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY 271 (347)
Q Consensus 193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~ 271 (347)
..+..+.++.+.....+...+.+.+.++.+...++.+...|.+...++.++...+|+|.|........+|+|||+| .+|
T Consensus 151 g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 151 GAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 4555555554443322211111222233322222333223444567788899999999999999999999999975 799
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh
Q 019025 272 IYLFATLYVFTLTIPSATAVYW 293 (347)
Q Consensus 272 v~~~s~~~~~~ly~~~g~~gY~ 293 (347)
.+..++..+.++|++.......
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988765543
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.86 E-value=2.7e-07 Score=92.01 Aligned_cols=230 Identities=12% Similarity=0.024 Sum_probs=121.8
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
+.++...-.+.+++|+|++.+|...++.|-. .++..++.++. ...+..++.|...+.|+.+-.| +-+
T Consensus 8 g~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~----~l~~al~~aEL~s~~P~~GG~y--------~y~ 74 (435)
T PRK10435 8 GLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG----AMSLAYVYARLATKNPQQGGPI--------AYA 74 (435)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCChh--------HHH
Confidence 4566667788999999999999999988743 33333333333 3355556778888777655333 233
Q ss_pred HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHH-HHHHHhhccCCCCchhHHHHHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFG-ACCATTVFIPSFHNYRIWSFLGLGMT 208 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~-~~~~pl~~i~sl~~l~~~S~~g~~~~ 208 (347)
++ +||+++.. ....... ...+.....+...+.+....+.........+.. +++..+.++ |....|..+.+..+..
T Consensus 75 ~~-~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~l-n~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 75 GE-ISPAFGFQ-TGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFV-NMLGGTWVSRLTTIGL 151 (435)
T ss_pred HH-HCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 45 68876654 2222111 011211111111111111111111111111111 111111111 2222333333332222
Q ss_pred ---HHHHHHHHHhhhhcccC----CCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025 209 ---TYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV 280 (347)
Q Consensus 209 ---~~~~~~i~v~~~~~g~~----~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~ 280 (347)
+...+.+.+....+.++ +++....+.+...++.++....|+|.|-......-+|+|||+| .+|.+..+...+
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv 231 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHH
Confidence 11111111122211111 1222222345678888999999999999999999999999975 999999999999
Q ss_pred HHHHhhhhhhhhhhcC
Q 019025 281 FTLTIPSATAVYWSFG 296 (347)
Q Consensus 281 ~~ly~~~g~~gY~afG 296 (347)
.++|+...........
T Consensus 232 ~ilYil~~~~~~~~~p 247 (435)
T PRK10435 232 GIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999988776554443
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.80 E-value=6.7e-07 Score=89.37 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=122.6
Q ss_pred cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
-+.+++..-.+.+++|+|++.+|...++.|-. .+...++.++. .....-++.|...+.|+.+-.| +-
T Consensus 10 lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~----~l~~al~~aEL~s~~P~aGG~y--------~~ 76 (445)
T PRK10644 10 VGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIG----ALGLSMVYAKMSSLDPSPGGSY--------AY 76 (445)
T ss_pred cCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCChh--------HH
Confidence 35677888888999999999999999987632 22222222222 2233344567777777655444 23
Q ss_pred hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhH-HHHHHHhhc--cCCCCchhHHHHHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIF-GACCATTVF--IPSFHNYRIWSFLGL 205 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~-~~~~~pl~~--i~sl~~l~~~S~~g~ 205 (347)
+++.+||.++.. ......+ ...+.........+...+..+..+.+....+. .+++..+.. ....|....+..+..
T Consensus 77 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~ 155 (445)
T PRK10644 77 ARRCFGPFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_pred HHHHcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 677899987653 2221111 11121111111111111111111222111111 122222222 222333333333222
Q ss_pred HHHHHHHHHHHHhhhhcccC----CCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025 206 GMTTYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV 280 (347)
Q Consensus 206 ~~~~~~~~~i~v~~~~~g~~----~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~ 280 (347)
...+.....+.+........ ++++.++..++..+..++....|+|.|-......-+|+|||+| .+|.+..+...+
T Consensus 156 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~ 235 (445)
T PRK10644 156 VLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHH
Confidence 21111111111222221111 1111111123445666788899999999999999999999976 899999999999
Q ss_pred HHHHhhhhhhhhhhcCc
Q 019025 281 FTLTIPSATAVYWSFGD 297 (347)
Q Consensus 281 ~~ly~~~g~~gY~afG~ 297 (347)
.++|++..+.....-++
T Consensus 236 ~v~Y~l~~~~~~~~~~~ 252 (445)
T PRK10644 236 AVCYVLSSTAIMGMIPN 252 (445)
T ss_pred HHHHHHHHHHHHhCCCH
Confidence 99999888764443433
No 21
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.78 E-value=6.1e-07 Score=85.81 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=129.5
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQM---GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~---G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (347)
|..|...-+...++|.|++.+|...++. ||+..++. ++......++..++ .+|.+++ +..
T Consensus 3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~----~~~~l~~~~l~~~l----~~~~p~~---------~l~ 65 (320)
T PF03845_consen 3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLG----GLIGLLLALLIYYL----LKRFPGK---------TLV 65 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH----HHHHHHHHHHHHHH----HHHCCCC---------CHH
Confidence 5667788888999999999999998776 47643332 23333334443332 2333322 256
Q ss_pred HHhHhhhcccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccccchhhHhH-HHHHHHhhccCCCCchhHHHHHHHH
Q 019025 128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIF-GACCATTVFIPSFHNYRIWSFLGLG 206 (347)
Q Consensus 128 ev~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~-~~~~~pl~~i~sl~~l~~~S~~g~~ 206 (347)
|..++.+||+.++........+..+.+...+-..++.+... -.-+...|.+.. ..+..-..-.+.++.+...+-+-..
T Consensus 66 ~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~-~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 66 EISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTY-LLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 89999999998875322222222222222221122211110 001223443322 2222233334556666554333222
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHHhh
Q 019025 207 MTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIP 286 (347)
Q Consensus 207 ~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~ 286 (347)
..+...+.+......+.+..+...-.+.++.+.+.+.-...+.|++-....-+...+|+|+|.+|....+...+..+|..
T Consensus 145 ~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~ 224 (320)
T PF03845_consen 145 IFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLF 224 (320)
T ss_pred HHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 11111111111122111111111112345677788888888999988888889999999999999999999988888888
Q ss_pred hhhhhhhhcCccc
Q 019025 287 SATAVYWSFGDQL 299 (347)
Q Consensus 287 ~g~~gY~afG~~~ 299 (347)
.-+.....||.+.
T Consensus 225 ~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 225 IIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHhcCHHH
Confidence 8888888899754
No 22
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.78 E-value=2.3e-06 Score=85.64 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=121.3
Q ss_pred chHHHHHHHhhhhhhhhhchHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP-~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.++.++-.+.+++|+|++.+| .+.++.|-. +++..++.+++... +..++.|...+.|..+- ..+-
T Consensus 15 ~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~----~a~~~aEl~s~~P~~Gg--------~~~~ 81 (452)
T TIGR01773 15 KTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVF----IMRMLGEMAVANPDTGS--------FSTY 81 (452)
T ss_pred cHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCC--------HHHH
Confidence 4556668888999999999999 778888853 55555554444433 33445677766665432 2356
Q ss_pred hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHH-HHhhccCCCCchhHHHHHHHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACC-ATTVFIPSFHNYRIWSFLGLGM 207 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~-~pl~~i~sl~~l~~~S~~g~~~ 207 (347)
+++.+||+++.. .+....+ ...+........+..+.+..+. ...|.....++. .-..-....+....+.....+.
T Consensus 82 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ 158 (452)
T TIGR01773 82 ADDAIGRWAGFT-IGWLYWWFWVLVIPLEAIAAAGILQYWFPD--IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI 158 (452)
T ss_pred HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 778899987654 2222111 1111111112222222222222 223433222211 1111122344444443332221
Q ss_pred HHHHHHHHHHhh---hhcccC----CCCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH
Q 019025 208 TTYTAWYLTIAA---VVHGQV----EGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY 273 (347)
Q Consensus 208 ~~~~~~~i~v~~---~~~g~~----~~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~ 273 (347)
-+.....+++.. ...+.+ .+.+ ++ .|+.+..++.++....|+|.|-.....+-+|+|||+| .+|.+
T Consensus 159 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 238 (452)
T TIGR01773 159 KVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT 238 (452)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHH
Confidence 111110111111 111111 0111 11 1344556888999999999999999999999999986 88998
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 019025 274 LFATLYVFTLTIPSATAVY 292 (347)
Q Consensus 274 ~~s~~~~~~ly~~~g~~gY 292 (347)
..+...+..+|+.......
T Consensus 239 ~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 239 NSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred HHHHHHHHHHHHHHHHHHe
Confidence 8777778888887654433
No 23
>PRK11021 putative transporter; Provisional
Probab=98.77 E-value=1e-06 Score=87.05 Aligned_cols=222 Identities=9% Similarity=0.065 Sum_probs=116.3
Q ss_pred hHHHHHHHhhhhhhhhhchHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 52 AWDAWFSCASNQVAQVLLTLPYSFSQM-GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 52 ~~~a~~nl~~~~iG~GiLsLP~af~~~-G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
.+++..-.+.+++|+|++.+|-...+. |- ..++..++.+++ ......++.|...+.|+++-.| .-.
T Consensus 3 ~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~----~~~~al~~aEl~s~~P~aGG~y--------~y~ 69 (410)
T PRK11021 3 LWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL----IFPIAIVFARLGRHFPHAGGPA--------HFV 69 (410)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCCHH--------HhH
Confidence 466777788999999999998766655 52 233444443333 3333445567777777655433 345
Q ss_pred HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT 209 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~ 209 (347)
++.+||+++.. ....... ...+.........+.+....+..+...+.+...+ ...+.++ |+...|..+-+..+.++
T Consensus 70 ~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l-n~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 70 GMAFGPRLGRV-TGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLT-LALLWLL-NLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHhCchhHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHH-HHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 67899987754 2222111 1111100111111111111111111112111111 1111111 22223333332222221
Q ss_pred HHHHHHHHhhhhccc--CCCCCCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHH
Q 019025 210 YTAWYLTIAAVVHGQ--VEGASHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLT 284 (347)
Q Consensus 210 ~~~~~i~v~~~~~g~--~~~v~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly 284 (347)
.....+ +.....+. ..+.... .+.++..++.++....|+|.|-......-+|+|||+| .+|.+..+...+.++|
T Consensus 147 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lY 225 (410)
T PRK11021 147 LIVALV-VAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVY 225 (410)
T ss_pred HHHHHH-HHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHH
Confidence 111111 11111121 1122111 2345677888999999999999999999999999976 8999999999999999
Q ss_pred hhhhhh
Q 019025 285 IPSATA 290 (347)
Q Consensus 285 ~~~g~~ 290 (347)
++....
T Consensus 226 il~~~~ 231 (410)
T PRK11021 226 WACTVV 231 (410)
T ss_pred HHHHHH
Confidence 988765
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.67 E-value=2.6e-06 Score=85.80 Aligned_cols=235 Identities=10% Similarity=0.042 Sum_probs=123.1
Q ss_pred CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccchhhcH
Q 019025 49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLS-GILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQW 126 (347)
Q Consensus 49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~-Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~-~~~~~~~~~~~y 126 (347)
.-+.+++....+++++|+|++.+|...++.|=.. .++..++.+++... ...+|.|...+.|+ .+-.|
T Consensus 8 ~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~----~al~~aEl~s~~P~~sGG~y------- 76 (473)
T TIGR00905 8 KLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLA----LAFVFAILATKKPELDGGIY------- 76 (473)
T ss_pred CccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCCCCCChh-------
Confidence 3467888899999999999999999988755211 12333333333332 33456677777776 44433
Q ss_pred HHHhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccccccc--ccchhhHhHHHH-H--HHhhccCCCCchhHH
Q 019025 127 FEVLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRL--DKRTWTYIFGAC-C--ATTVFIPSFHNYRIW 200 (347)
Q Consensus 127 ~ev~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~--~~~~~~~i~~~~-~--~pl~~i~sl~~l~~~ 200 (347)
+-.++.+||+++.. .+....+ ...+...+.....+.+.++.+.. +......+.+.+ . .-..-.+..+..+.+
T Consensus 77 -~y~~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 77 -AYAREGFGPYIGFM-SGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred -hhHHhHcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45578899987764 2222111 11111111111111111111111 111111112211 1 112223344444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--cccCC--CC-CCCCc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhH
Q 019025 201 SFLGLGMTTYTAWYLTIAAVV--HGQVE--GA-SHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 272 (347)
Q Consensus 201 S~~g~~~~~~~~~~i~v~~~~--~g~~~--~v-~~~~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v 272 (347)
..+.....+...+.+.+..+. ++... +. .+..| ..+..++.++....|+|.|-.....+-+|+||+++.+|.
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPra 234 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHH
Confidence 333322211111111122221 21110 11 11112 234567778889999999999999999999995558999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
+..+..++.++|+..........+
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999888766443333
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.57 E-value=5.4e-06 Score=85.30 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=125.9
Q ss_pred cCcchHHHHHHHhhhhhhhhhchHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhc
Q 019025 48 HGGSAWDAWFSCASNQVAQVLLTLPYSF--SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 125 (347)
Q Consensus 48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af--~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 125 (347)
+.=+.+|...--+..++|+|+..+|-.. ...|-. .++..++.++. +.+...||.|+..+.|+.+-.|.
T Consensus 28 r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~----~l~~al~yaElas~~P~sGg~Y~----- 97 (557)
T TIGR00906 28 RCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA----AVLSGFCYAEFGARVPKAGSAYL----- 97 (557)
T ss_pred hcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCccee-----
Confidence 3346777778888899999999999654 347743 23333333333 33345567888888887665552
Q ss_pred HHHHhHhhhcccchhhhhhhHHHH-HHHH-H-H-----HHHHh-hcccccc-------cc-cccccc-hhhHhHHHHHHH
Q 019025 126 WFEVLDGLLGPYWKAVGLAFNCTF-LLFG-S-V-----IQLIA-CASNIYY-------IN-DRLDKR-TWTYIFGACCAT 187 (347)
Q Consensus 126 y~ev~~~~~G~~~~~~~~~~~i~~-~~~g-~-v-----~~li~-~~~~l~~-------~~-~~~~~~-~~~~i~~~~~~p 187 (347)
| .+..+|+.++.+ .+.+..+ ...+ + + .|+-. ....+.. ++ +..... .+..+..++.+-
T Consensus 98 y---~~~~~G~~~gfi-~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~ 173 (557)
T TIGR00906 98 Y---SYVTVGELWAFI-TGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA 173 (557)
T ss_pred e---HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH
Confidence 3 345678876654 2222211 1111 1 1 11110 1110100 00 001111 111111111122
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC--------CCCchhHHHHHhhhhhHHHhcccccchHhH
Q 019025 188 TVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS--------HTAPTKLVLYFTGATNILYTFGGHAVTVEI 259 (347)
Q Consensus 188 l~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~--------~~~p~~~~~~f~a~g~i~faF~gh~~~~~I 259 (347)
....+..+..++++.+..+..+.....+++.+..+....++. ...|..+.+++.++....|+|.|-..+...
T Consensus 174 ~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 174 VLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 223344555555544333221211112223333333222222 112334567888999999999999999999
Q ss_pred HHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhh
Q 019025 260 MHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWS 294 (347)
Q Consensus 260 ~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~a 294 (347)
-+|+|||+| .++.+..+..++.++|+++.+.--..
T Consensus 254 aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~ 289 (557)
T TIGR00906 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLM 289 (557)
T ss_pred HHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999987 89999999999999999887654433
No 26
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.57 E-value=2.9e-06 Score=83.98 Aligned_cols=233 Identities=14% Similarity=0.158 Sum_probs=127.4
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLG-SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~-~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.+++..-.++.++|+|+...| ..++.|.. .++..++.+++. ..... +|.|+.++.++++-.| .-
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~----~~~el~~~~p~~GG~y--------~~ 67 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIAL----SYAELSSAYPSAGGIY--------VW 67 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHH----HHHHHHTTTTSSTTHH--------HH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHH----HHHHHhccCCCcCeee--------eh
Confidence 4677888888999999999999 77778865 444443333333 22222 3457766666554433 45
Q ss_pred hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccc-cccccccchh-hHhHHHH---HHHhhccCCCCchhHHHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYY-INDRLDKRTW-TYIFGAC---CATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~-~~~~~~~~~~-~~i~~~~---~~pl~~i~sl~~l~~~S~~ 203 (347)
.++++||+++.+ ......+ .............+.+.+ ++...+...| ..+.+++ .....-.+..|..++...+
T Consensus 68 ~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 68 VSRAFGPFWGFI-VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhcccccchhc-ccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 677789987765 2222211 111111122222222222 2222222122 1122221 1222223334444444433
Q ss_pred HHHHHH-HHHHHHHHhhhhcccCCC-------CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHH
Q 019025 204 GLGMTT-YTAWYLTIAAVVHGQVEG-------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLF 275 (347)
Q Consensus 204 g~~~~~-~~~~~i~v~~~~~g~~~~-------v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~ 275 (347)
..+..+ ....++.+.++.....+. .+...|+.+...+.+++..+|+|.|-.......+|+|| ++.+|.+..
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~ 225 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeeccc
Confidence 332222 121122233333221110 11112333334678889999999999999999999998 789999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcCccc
Q 019025 276 ATLYVFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 276 s~~~~~~ly~~~g~~gY~afG~~~ 299 (347)
+...+.++|++.........+++.
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~ 249 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDE 249 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCH
T ss_pred chhHHHHHHhhhhheeeecccchh
Confidence 999999999999887777766654
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.55 E-value=1.1e-05 Score=81.29 Aligned_cols=233 Identities=8% Similarity=0.038 Sum_probs=119.9
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccchhhcHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFSQM-GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKEN-VSFKNHVIQWFE 128 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~~~-G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~-~~~~~~~~~y~e 128 (347)
+.++.+.-.+.+++|+|++.+|....+. |....++..++.++.... +..++.|...+.|+.+ -.| +
T Consensus 4 gl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~----~al~~aeL~s~~P~~gGG~y--------~ 71 (468)
T TIGR03810 4 GLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLA----LAFSFQNLANKKPELDGGVY--------S 71 (468)
T ss_pred CHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCCCCCChh--------h
Confidence 5677888888999999999999886644 422223334444444433 3344567777766532 223 3
Q ss_pred HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccccccc--ccchhhHhHHH-HH--HHhhccCCCCchhHHHH
Q 019025 129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRL--DKRTWTYIFGA-CC--ATTVFIPSFHNYRIWSF 202 (347)
Q Consensus 129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~--~~~~~~~i~~~-~~--~pl~~i~sl~~l~~~S~ 202 (347)
-+++.+||+++.. ....... ...+...+.....+.+.+..+.. +...+..+.+. +. +-..-.+..+..+.++.
T Consensus 72 y~~~~fG~~~gf~-~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~ 150 (468)
T TIGR03810 72 YAKAGFGPFMGFI-SAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINT 150 (468)
T ss_pred hHHhHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4678899986654 2221111 01111111111111111211111 12222222221 11 11111233444444333
Q ss_pred HHHHHHHHHHHHHHHhhh--hcccC--CC-CCCC--C---chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhH
Q 019025 203 LGLGMTTYTAWYLTIAAV--VHGQV--EG-ASHT--A---PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 272 (347)
Q Consensus 203 ~g~~~~~~~~~~i~v~~~--~~g~~--~~-v~~~--~---p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v 272 (347)
+..+.-+.....+++.++ .++.. ++ .+.. . ...+..+..++....|+|.|-.....+-+|+|||++.+|.
T Consensus 151 i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~a 230 (468)
T TIGR03810 151 ITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKA 230 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHH
Confidence 322211111111112111 12111 01 1110 1 1123455578889999999999988888999998889999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
+..+...+.++|+...+..+-..+
T Consensus 231 i~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 231 TVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999998877665544
No 28
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.54 E-value=1.9e-05 Score=79.18 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=116.1
Q ss_pred cchHHHHHHHhhhhhhhhhchHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025 50 GSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~GiLsLP~a-f~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e 128 (347)
=+.++.+.-.+.+++|+|++.+|.. .+.+|-. .++..++.+++....+. ++.|...+.|+.+-.| +
T Consensus 11 L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~----~~aEl~s~~P~~Gg~y--------~ 77 (457)
T PRK10580 11 LSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMR----ALGEMSVHNPAASSFS--------R 77 (457)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCCHH--------H
Confidence 3566777888899999999999876 5556642 34444444444444433 4467777666554333 3
Q ss_pred HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHH
Q 019025 129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM 207 (347)
Q Consensus 129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~ 207 (347)
-+++.+||.++.+ ......+ ....+.......+..+....+......|.+.+.+++.-+ -.+..+.......+..+.
T Consensus 78 y~~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~~~~ 155 (457)
T PRK10580 78 YAQENLGPLAGYI-TGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAV-NLMSVKVFGELEFWFSFF 155 (457)
T ss_pred HHHHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HHccchhHHHHHHHHHHH
Confidence 5577889987654 2222211 111111111122222222222222222322222222222 223334443333221111
Q ss_pred HHHHHHHHHHh-------hhhcc-cCCCC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025 208 TTYTAWYLTIA-------AVVHG-QVEGA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (347)
Q Consensus 208 ~~~~~~~i~v~-------~~~~g-~~~~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v 272 (347)
.+...+.+++. ...++ .+.+. +.+ .|..+..++.++....|+|.|-......-+|+|||+| .++.
T Consensus 156 ~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrA 235 (457)
T PRK10580 156 KVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRA 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHH
Confidence 11000011111 11111 11111 111 1334557788889999999999999999999999998 7888
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 019025 273 YLFATLYVFTLTIPSATA 290 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~ 290 (347)
+..+...+.++|+.....
T Consensus 236 i~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 236 INSVPMRILVFYVGTLFV 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877776677777666443
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.49 E-value=1.7e-05 Score=79.87 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=50.6
Q ss_pred hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
....++.++....|+|.|-..+...-+|+|||+| .+|.+..+...+.++|+......-...+
T Consensus 204 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 204 GGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 3456777888899999999999999999999987 8999998888888888887665433333
No 30
>PRK15049 L-asparagine permease; Provisional
Probab=98.48 E-value=2.7e-05 Score=79.18 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=116.3
Q ss_pred chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.++..+-.+.++||+|++..|. +.+++|-. +++..++.+++. .++..++.|...+.|+.+-.| .-
T Consensus 31 ~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~----~~v~~slaELas~~P~aGg~y--------~y 97 (499)
T PRK15049 31 GNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFS----FFILRALGELVLHRPSSGSFV--------SY 97 (499)
T ss_pred CHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCHH--------HH
Confidence 44555577889999999988777 77778852 444444444433 333344567777776554322 45
Q ss_pred hHhhhcccchhhhhhhHHHHH-HHHHHHHHHhhcccccccccccccchhhHhHHHHHH-HhhccCCCCchhHHHHHHH-H
Q 019025 130 LDGLLGPYWKAVGLAFNCTFL-LFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA-TTVFIPSFHNYRIWSFLGL-G 206 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~-~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~-pl~~i~sl~~l~~~S~~g~-~ 206 (347)
+++.+||+++.+ .+....+. ...+.......+....+.....+...|.....++.+ -+.-....+.+..+..+.. +
T Consensus 98 ~~~~~G~~~gf~-~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~i 176 (499)
T PRK15049 98 AREFLGEKAAYV-AGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALI 176 (499)
T ss_pred HHHHhCcHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889976643 22221110 011111111111111121111122345432222111 1111122233333322211 1
Q ss_pred HHHHHHHHHHH--hhhhcccCC-----CCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025 207 MTTYTAWYLTI--AAVVHGQVE-----GAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (347)
Q Consensus 207 ~~~~~~~~i~v--~~~~~g~~~-----~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v 272 (347)
..+.+..++.+ ..+..+.+. +.. +. .|..+..++.++....|+|.|-..+...-+|+|||+| .+|.
T Consensus 177 ki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrA 256 (499)
T PRK15049 177 KVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKA 256 (499)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHH
Confidence 11111111111 111112111 111 11 1334455666777899999999999999999999987 8999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
+..++..+.++|+..........+
T Consensus 257 i~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 257 INSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHheecc
Confidence 988888888878776655443333
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.48 E-value=1.9e-05 Score=79.57 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=116.0
Q ss_pred cCcchHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcH
Q 019025 48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (347)
Q Consensus 48 ~ggS~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 126 (347)
+.-+.++...-.+.++||+|++-.|. +++++|. ..++..++.+++...... ++.|.....+.. . ++
T Consensus 20 r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~----s~aEl~s~~~~~----~----~~ 86 (469)
T PRK11049 20 RNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMR----AMGELLLSNLEY----K----SF 86 (469)
T ss_pred ccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHH----HHHHHHHhcCCC----C----cH
Confidence 33455556677789999999999765 7888886 344444455554433333 334554432221 1 13
Q ss_pred HHHhHhhhcccchhhhhhhHHHHHH-HHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025 127 FEVLDGLLGPYWKAVGLAFNCTFLL-FGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (347)
Q Consensus 127 ~ev~~~~~G~~~~~~~~~~~i~~~~-~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~ 205 (347)
.+.+++.+||.++.+ .+....+.. .+........+..+.+..+......+..++..++..+.. ...+....+..+..
T Consensus 87 ~~ya~~~~g~~~gf~-~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~~ 164 (469)
T PRK11049 87 SDFASDLLGPWAGYF-TGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNL-ATVKMFGEMEFWFA 164 (469)
T ss_pred HHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 467888999986654 222221111 111111111222222222222221222221111222211 22233333332222
Q ss_pred HHHHHHHHHHHHhhhh---cc--cCC----CC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-c
Q 019025 206 GMTTYTAWYLTIAAVV---HG--QVE----GA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 269 (347)
Q Consensus 206 ~~~~~~~~~i~v~~~~---~g--~~~----~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f 269 (347)
+.-+.....+++.++. .+ .+. +. +.+ .|..+..++.++....|+|.|-..+...-+|+|||+| .
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 244 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence 1111111111112111 11 010 11 111 1344556888999999999999999999999999987 7
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhh
Q 019025 270 KYIYLFATLYVFTLTIPSATAVY 292 (347)
Q Consensus 270 ~~v~~~s~~~~~~ly~~~g~~gY 292 (347)
+|.+..+...+.++|++.....+
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHe
Confidence 88887666667778876665544
No 32
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.45 E-value=3.7e-05 Score=76.95 Aligned_cols=214 Identities=11% Similarity=0.090 Sum_probs=111.3
Q ss_pred hhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccc
Q 019025 60 ASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (347)
Q Consensus 60 ~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~ 138 (347)
+.++||+|++-.|- +.++.|-. .++..++.+++.... ..++.|...+.|+.+-.| +-+++.+||++
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~----al~~aEL~s~~P~~Gg~y--------~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMI----MRMLAEMAVATPDTGSFS--------TYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCCHH--------HHHHHHcChHH
Confidence 45789999999887 78888852 444444444444333 345567777766554322 45668899987
Q ss_pred hhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHH--HHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 019025 139 KAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFG--ACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL 215 (347)
Q Consensus 139 ~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~--~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i 215 (347)
+.. .+....+ ............+..+.+..+.. ..|.+... ++...+. ....+..+.+..+..+.-+...+.+
T Consensus 71 gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ 146 (446)
T PRK10197 71 GYT-IGWLYWWFWVLVIPLEANIAAMILHSWVPGI--PIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAF 146 (446)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHH
Confidence 754 2222211 01111001111111111111211 22322221 1111111 2233333333222221111111111
Q ss_pred HHhhh--hcccC-----CCC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHH
Q 019025 216 TIAAV--VHGQV-----EGA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVF 281 (347)
Q Consensus 216 ~v~~~--~~g~~-----~~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~ 281 (347)
++.++ ..|.. .+. +.. .|..+..++.++....|+|.|-..+...-+|+|||+| .+|.+..++..+.
T Consensus 147 ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~ 226 (446)
T PRK10197 147 IFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRIS 226 (446)
T ss_pred HHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 11111 12211 111 111 1344567889999999999999999999999999987 8899888888888
Q ss_pred HHHhhhhhh
Q 019025 282 TLTIPSATA 290 (347)
Q Consensus 282 ~ly~~~g~~ 290 (347)
++|+...+.
T Consensus 227 i~Yil~~~~ 235 (446)
T PRK10197 227 IFYLCSIFV 235 (446)
T ss_pred HHHHHHHHH
Confidence 888876555
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.44 E-value=2e-05 Score=78.67 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=46.5
Q ss_pred hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhh
Q 019025 235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSAT 289 (347)
Q Consensus 235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~ 289 (347)
.+..++.++....|+|.|.......-+|+|||+| .+|.+..+..++.++|+....
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999999999999999999976 899999888888888876643
No 34
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.44 E-value=2.4e-05 Score=78.13 Aligned_cols=230 Identities=11% Similarity=0.089 Sum_probs=117.2
Q ss_pred CcchHHHHHHHhhhhhhhhhchHHHHH-HHhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcH
Q 019025 49 GGSAWDAWFSCASNQVAQVLLTLPYSF-SQMGML-SGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 126 (347)
Q Consensus 49 ggS~~~a~~nl~~~~iG~GiLsLP~af-~~~G~v-~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y 126 (347)
.-+.++++.-.+..++|+|++..|... ++.|-. ..++..++.+++... ...+|.|...+.|+.+-.|. |
T Consensus 9 ~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~----~al~~aEl~s~~P~~GG~y~-----y 79 (445)
T PRK11357 9 KLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIP----QMCVYAELSTAYPENGADYV-----Y 79 (445)
T ss_pred cccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCcee-----e
Confidence 345667777777888999999999874 455632 223333444444333 33345677777776655442 3
Q ss_pred HHHhHhhhcccchhhhhhhHHHHH--HHHHHHHHHhhcccccccccccccchhhHhHHHHHHHh--hccCCCCchhHHHH
Q 019025 127 FEVLDGLLGPYWKAVGLAFNCTFL--LFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATT--VFIPSFHNYRIWSF 202 (347)
Q Consensus 127 ~ev~~~~~G~~~~~~~~~~~i~~~--~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl--~~i~sl~~l~~~S~ 202 (347)
.++.+||.++.. ........ ..+...+....++.+.+..+ .+...+..+..++..-+ .-.+..+....+..
T Consensus 80 ---~~~~~g~~~gf~-~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 80 ---LKNAGSRPLAFL-SGWASFWANDAPSLSIMALAIVSNLGFLTP-IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred ---HHHhcCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 346788876643 22221110 11111122222222222111 11111111111111111 11233333333333
Q ss_pred HHHHHHHHHHHHHHHhhhh--cccC--CCCCCC-Cc-hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHH
Q 019025 203 LGLGMTTYTAWYLTIAAVV--HGQV--EGASHT-AP-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF 275 (347)
Q Consensus 203 ~g~~~~~~~~~~i~v~~~~--~g~~--~~v~~~-~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~ 275 (347)
+..+..+.....+++.++. ++.. ++.+.. .. .++..++.++....|+|.|-......-+|+|||+| .+|.+..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 2222111111112222221 2211 010110 11 12456778889999999999999999999999987 7999999
Q ss_pred HHHHHHHHHhhhhhhhh
Q 019025 276 ATLYVFTLTIPSATAVY 292 (347)
Q Consensus 276 s~~~~~~ly~~~g~~gY 292 (347)
++..+.++|++......
T Consensus 235 ~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 235 SCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988766433
No 35
>PRK10249 phenylalanine transporter; Provisional
Probab=98.43 E-value=3.3e-05 Score=77.60 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=118.9
Q ss_pred chHHHHHHHhhhhhhhhhchHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPYSFS-QMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~af~-~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.++..+-.+.+++|+|++..|-... ++|-. .++..++.+++. .++..++.|...+.|..+-. .+-
T Consensus 24 ~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~----~~~~~~~aEl~~~~P~~Gg~--------~~y 90 (458)
T PRK10249 24 HNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIA----FLIMRQLGEMVVEEPVSGSF--------AHF 90 (458)
T ss_pred cHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCH--------HHH
Confidence 34555577788999999999776554 55642 444444444443 33344566777777765432 246
Q ss_pred hHhhhcccchhhhhhhHHHHHH-HHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH-HHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTFLL-FGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG-LGM 207 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~~-~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g-~~~ 207 (347)
+++.+|++++.. .+....+.. ..........+..+.++.+......+..++..+...+. .+..+..+.+..+. .+-
T Consensus 91 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ik 168 (458)
T PRK10249 91 AYKYWGPFAGFL-SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVN-LVNVRLYGETEFWFALIK 168 (458)
T ss_pred HHHHhChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHHH
Confidence 678899987754 322221111 11122222222222222222222122222222222222 22333333332221 111
Q ss_pred HHH-HHHHH-HHhhhhcccC---CCCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHH
Q 019025 208 TTY-TAWYL-TIAAVVHGQV---EGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF 275 (347)
Q Consensus 208 ~~~-~~~~i-~v~~~~~g~~---~~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~ 275 (347)
.+. ..+++ .+..+..+.+ .+.+ +. .|..+..++.++....|+|.|-......-+|+|||+| .+|.+..
T Consensus 169 v~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~ 248 (458)
T PRK10249 169 VLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQ 248 (458)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHH
Confidence 110 11000 0111111111 1111 11 1345667788999999999999999999999999987 7999988
Q ss_pred HHHHHHHHHhhhhhhhhhhcC
Q 019025 276 ATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 276 s~~~~~~ly~~~g~~gY~afG 296 (347)
+...+.++|+..........+
T Consensus 249 ~~~~~~~~y~~~~~~~~~~~~ 269 (458)
T PRK10249 249 VVYRILLFYIGSLVVLLALYP 269 (458)
T ss_pred HHHHHHHHHHHHHHHHheecc
Confidence 888888888775554443333
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.39 E-value=7.9e-06 Score=88.62 Aligned_cols=217 Identities=14% Similarity=0.160 Sum_probs=118.0
Q ss_pred HHHhhhhhhhhhch-HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccccchhhcHHHHhHhhh
Q 019025 57 FSCASNQVAQVLLT-LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSR-KEKENVSFKNHVIQWFEVLDGLL 134 (347)
Q Consensus 57 ~nl~~~~iG~GiLs-LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~-~~~~~~~~~~~~~~y~ev~~~~~ 134 (347)
.-++.+++|+|+.- +++...++|...+++..++.++++..|+.-+ .+...+ .++.+-.| ....+++
T Consensus 86 ~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~----seiaTng~p~aGG~Y--------~yisral 153 (953)
T TIGR00930 86 VPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSM----SAIATNGVVKGGGAY--------YLISRSL 153 (953)
T ss_pred HhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCccHHH--------HHHHHHh
Confidence 45578899999765 8888889997777777777777777777644 455554 44444333 3567788
Q ss_pred cccchhhhhhhHHHH-HHHHHHHHHHhhccccccc-c--------ccc-ccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 135 GPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYI-N--------DRL-DKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 135 G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~-~--------~~~-~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
|+.++.. +++...+ ...++..+.+..++.+..+ . +.. +.+.+..+..+++..++ +...++.+-+
T Consensus 154 Gp~~Gf~-iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In----~~Gvk~~ak~ 228 (953)
T TIGR00930 154 GPEFGGS-IGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS----FAGMEWENKA 228 (953)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH----HhhHHHHHHH
Confidence 9976543 2222211 1122233333222222111 0 001 12222222222222222 2234444444
Q ss_pred HHHHHHH--HHHH-HHHhhhhccc-CC--CC--------CCC-Cc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCC
Q 019025 204 GLGMTTY--TAWY-LTIAAVVHGQ-VE--GA--------SHT-AP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWK 265 (347)
Q Consensus 204 g~~~~~~--~~~~-i~v~~~~~g~-~~--~v--------~~~-~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~ 265 (347)
..+.++. ++++ +++.++.... .+ +. ..+ .| .....++..++++.+||.|......+-.|+|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKn 308 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKD 308 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4332221 1111 1111111110 00 00 000 11 11122566778888899999999999999999
Q ss_pred Ccc-chhHHHHHHHHHHHHHhhhhhh
Q 019025 266 PQK-FKYIYLFATLYVFTLTIPSATA 290 (347)
Q Consensus 266 P~~-f~~v~~~s~~~~~~ly~~~g~~ 290 (347)
|+| .++....+..+++++|+++.++
T Consensus 309 P~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 309 PQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 987 8999999999999999998764
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.38 E-value=4.5e-05 Score=76.91 Aligned_cols=227 Identities=12% Similarity=0.090 Sum_probs=118.3
Q ss_pred chHHHHHHHhhhhhhhhhchHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP-~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.++.+.-.+.+++|+|++..| .+.+++|-..-++..++.+++....+ .++.|...+.|+.+-. |.+-
T Consensus 5 ~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a----~~~aEl~s~~P~~gG~-------~~~~ 73 (478)
T TIGR00913 5 KQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVM----QSLGEMATFYPVVSGS-------FATY 73 (478)
T ss_pred cHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCCCC-------HHHH
Confidence 4556667778899999998755 66667774322333444444433333 3456777766633222 3456
Q ss_pred hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT 208 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~ 208 (347)
+++.+||+++.. .+....+ ...........++..+.+..+......|..++.++.. +.-.+..+..+....+....-
T Consensus 74 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~~k 151 (478)
T TIGR00913 74 ASRFVDPAFGFA-VGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSSIK 151 (478)
T ss_pred HHHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHH
Confidence 778899987754 2222211 1111111111222222232232333344332222111 222233444444433222111
Q ss_pred HHHHHHHHHhh--hhcc-c--CC--C---CC-CC--Cch----hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-ch
Q 019025 209 TYTAWYLTIAA--VVHG-Q--VE--G---AS-HT--APT----KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 270 (347)
Q Consensus 209 ~~~~~~i~v~~--~~~g-~--~~--~---v~-~~--~p~----~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~ 270 (347)
+...+.+++.+ ...+ . .+ . .. .+ .|. .+..+..++....|+|.|-.....+-+|+|||+| .+
T Consensus 152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 231 (478)
T TIGR00913 152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIP 231 (478)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHH
Confidence 11100111111 1111 1 11 0 00 00 111 2566778888999999999999999999999987 89
Q ss_pred hHHHHHHHHHHHHHhhhhhh
Q 019025 271 YIYLFATLYVFTLTIPSATA 290 (347)
Q Consensus 271 ~v~~~s~~~~~~ly~~~g~~ 290 (347)
|.+..+...+.++|+...+.
T Consensus 232 rai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 232 RAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 38
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.35 E-value=4e-05 Score=76.98 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred hHHHHHHHhhhhhhhhhchHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 52 AWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 52 ~~~a~~nl~~~~iG~GiLsLP~af~~-~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
.++..+-.+.++||+|++..|-...+ +|- ..++..++.+++ ..++..++.|...+.|..+-.| +-+
T Consensus 16 ~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~----~~~v~~s~aEl~s~~P~aGg~y--------~~~ 82 (456)
T PRK10238 16 NRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI----AFLIMRQLGEMVVEEPVAGSFS--------HFA 82 (456)
T ss_pred HHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCHH--------HHH
Confidence 33444677889999999888876655 452 222223333332 3334445567777766544322 335
Q ss_pred HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025 131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT 209 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~ 209 (347)
++.+||.++.. .+....+ ...++.......++.+....++.....+..++..++.-+... ..+.+..+..+..+..+
T Consensus 83 ~~~~g~~~gf~-~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~-gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 83 YKYWGSFAGFA-SGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLT-NVKVFGEMEFWFAIIKV 160 (456)
T ss_pred HHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 56789876654 2222111 111122222223333332222222222222222222222111 22333333322221111
Q ss_pred HHHHHHHH---hhhhcc--cC-CCC----CCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHH
Q 019025 210 YTAWYLTI---AAVVHG--QV-EGA----SHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFA 276 (347)
Q Consensus 210 ~~~~~i~v---~~~~~g--~~-~~v----~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s 276 (347)
...+.+++ ..+..+ .+ ..+ ++++ |..+..+..+++...|+|.|-......-+|+|||+| .+|.+..+
T Consensus 161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~ 240 (456)
T PRK10238 161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV 240 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 11101111 111111 11 111 1111 334456667788899999999999999999999987 88988777
Q ss_pred HHHHHHHHhhh
Q 019025 277 TLYVFTLTIPS 287 (347)
Q Consensus 277 ~~~~~~ly~~~ 287 (347)
...+.++|+..
T Consensus 241 ~~~i~~~y~~~ 251 (456)
T PRK10238 241 IYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHH
Confidence 77677776554
No 39
>PRK10746 putative transport protein YifK; Provisional
Probab=98.32 E-value=0.00019 Score=72.17 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=114.3
Q ss_pred chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+..+..+-.+.++||+|++..|. +.+.+|- ..++..++.+++....+ .++.|...+.|..+- ..+-
T Consensus 13 ~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~----~~~aEl~~~~P~sGg--------~~~y 79 (461)
T PRK10746 13 EARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIM----RSMGEMLFLEPVTGS--------FAVY 79 (461)
T ss_pred cHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCC--------HHHH
Confidence 44455577788999999998665 4556664 23333444444433333 344566666665432 2356
Q ss_pred hHhhhcccchhhhhhhHHHHHHH-HHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH-HHHH
Q 019025 130 LDGLLGPYWKAVGLAFNCTFLLF-GSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL-GLGM 207 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~~~-g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~~ 207 (347)
+++.+||+++.. ......+... .....+...+..+.+..+......|..++.+++.-+. .+..+..+..... +.+.
T Consensus 80 ~~~~~g~~~Gf~-~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~~k 157 (461)
T PRK10746 80 AHRYMSPFFGYL-TAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALAN-LAAVRLYGEIEFWFAMIK 157 (461)
T ss_pred HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 777889987754 3332211111 1122222233333333333332233322222222221 1222333322211 1111
Q ss_pred HHHHHHHHH--H--hhhhcccC---CCCC----CCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH
Q 019025 208 TTYTAWYLT--I--AAVVHGQV---EGAS----HTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY 273 (347)
Q Consensus 208 ~~~~~~~i~--v--~~~~~g~~---~~v~----~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~ 273 (347)
.+.+..+++ + .....+.. .+.+ +.+ |..+.++..++....|+|.|-..+...-.|+|||+| .+|.+
T Consensus 158 i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai 237 (461)
T PRK10746 158 VTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAV 237 (461)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 111110110 0 00111111 1111 111 334667788999999999999999999999999987 78888
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 019025 274 LFATLYVFTLTIPSATAVY 292 (347)
Q Consensus 274 ~~s~~~~~~ly~~~g~~gY 292 (347)
..+...+.++|+......-
T Consensus 238 ~~~~~~i~~~yv~~~~~~~ 256 (461)
T PRK10746 238 GKVLWRILIFYVGAIFVIV 256 (461)
T ss_pred HHHHHHHHHHHHHHHHHHe
Confidence 8777777777776544433
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.32 E-value=4.9e-05 Score=77.18 Aligned_cols=237 Identities=12% Similarity=0.134 Sum_probs=120.0
Q ss_pred cccCcchHHHHHHHhhhhhhhhhchHHHH-HHHhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccch
Q 019025 46 LWHGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGI--LLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH 122 (347)
Q Consensus 46 ~~~ggS~~~a~~nl~~~~iG~GiLsLP~a-f~~~G~v~Gi--illi~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~ 122 (347)
+-+.=+.++...-.+.+++|+|++..|.. .+++|-. |. +..++.+++....+ -++.|...+.|+.+-.|
T Consensus 40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~a----l~~aELas~~P~sGG~y--- 111 (501)
T TIGR00911 40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGA----LVYAELGTTIPKSGGEY--- 111 (501)
T ss_pred cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHH----HHHHHHHhhcCCCCchh---
Confidence 33444667777777788999999998875 4556743 43 22333333333332 34567777766654433
Q ss_pred hhcHHHHhHhhhcccchhhhhhhHHHHHH-HH-HHHHHHhhcccc-cccccccccchhh-HhHH-HHHHHhh--ccCCCC
Q 019025 123 VIQWFEVLDGLLGPYWKAVGLAFNCTFLL-FG-SVIQLIACASNI-YYINDRLDKRTWT-YIFG-ACCATTV--FIPSFH 195 (347)
Q Consensus 123 ~~~y~ev~~~~~G~~~~~~~~~~~i~~~~-~g-~v~~li~~~~~l-~~~~~~~~~~~~~-~i~~-~~~~pl~--~i~sl~ 195 (347)
.-.++.+||.++.+. ........ .+ +.......++.+ ....+......|. .+.+ ++...+. -.+..+
T Consensus 112 -----~~~~~~~g~~~gf~~-gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk 185 (501)
T TIGR00911 112 -----NYILEVFGPLLAFLR-LWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVK 185 (501)
T ss_pred -----hhHHhHhCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 234567898876542 22111101 11 111111112111 1011111111221 1112 1111111 122333
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhh---cccCCCCC----CC-CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCc
Q 019025 196 NYRIWSFLGLGMTTYTAWYLTIAAVV---HGQVEGAS----HT-APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 267 (347)
Q Consensus 196 ~l~~~S~~g~~~~~~~~~~i~v~~~~---~g~~~~v~----~~-~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~ 267 (347)
...++..+..+..+...+.+++.++. .+...+.+ .+ .+.+...+..++....|+|.|-.....+-+|+|||+
T Consensus 186 ~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~ 265 (501)
T TIGR00911 186 WATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch
Confidence 33333332222111111112222222 12111111 11 112355677888999999999999999999999997
Q ss_pred c-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 268 K-FKYIYLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 268 ~-f~~v~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
| .+|.+..+...+.++|++..+......+
T Consensus 266 r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 266 RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6 8999999999999999998665544443
No 41
>PRK10836 lysine transporter; Provisional
Probab=98.25 E-value=0.00016 Score=73.22 Aligned_cols=231 Identities=11% Similarity=0.057 Sum_probs=114.7
Q ss_pred chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025 51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 129 (347)
Q Consensus 51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev 129 (347)
+.++...-.+.++||+|++.+|- +.+++|-...++..++.+++.. +...+|.|...+.|+.+-.| .-
T Consensus 18 ~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~----~~al~~aEL~s~~P~sGg~y--------~y 85 (489)
T PRK10836 18 KARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVY----FLMTSLGELAAYMPVSGSFA--------TY 85 (489)
T ss_pred cHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCCHH--------HH
Confidence 45666688889999999999996 6667775333444444444443 33345677788777655433 33
Q ss_pred hHhhhcccchhhhhhhHHHHHHHHH-HHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH-HHH-
Q 019025 130 LDGLLGPYWKAVGLAFNCTFLLFGS-VIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL-GLG- 206 (347)
Q Consensus 130 ~~~~~G~~~~~~~~~~~i~~~~~g~-v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~- 206 (347)
+++.+|+.++.. .+....+....+ ..........+.+..+......|..++.+++.-+ -....+..+....+ ...
T Consensus 86 ~~~~~g~~~gf~-~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-N~~gv~~~~~~~~~~~~~k 163 (489)
T PRK10836 86 GQNYVEEGFGFA-LGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLL-NYISVRGFGEAEYWFSLIK 163 (489)
T ss_pred HHHHcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-HHHcchhhhhhHHHHHHHH
Confidence 445667765543 222221111111 1111111111112111111111222211111111 12223333222211 111
Q ss_pred -HHH--HHHH-HHHHhhhhcccC----CCCCC-CC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHH
Q 019025 207 -MTT--YTAW-YLTIAAVVHGQV----EGASH-TA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYL 274 (347)
Q Consensus 207 -~~~--~~~~-~i~v~~~~~g~~----~~v~~-~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~ 274 (347)
..+ ++.. .+.+.+..++.+ .+++. .. +..+..++.++....|+|.|-..+...-+|+|||+| .+|.+.
T Consensus 164 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~ 243 (489)
T PRK10836 164 VTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVR 243 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111 1110 011111111111 01111 11 123445555566678999999999999999999987 799999
Q ss_pred HHHHHHHHHHhhhhhhhhhhc
Q 019025 275 FATLYVFTLTIPSATAVYWSF 295 (347)
Q Consensus 275 ~s~~~~~~ly~~~g~~gY~af 295 (347)
.++..+.++|+..........
T Consensus 244 ~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 244 QVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHheec
Confidence 999999999988765544333
No 42
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.17 E-value=3e-05 Score=77.16 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=131.3
Q ss_pred HHHhhhhhhhhhchHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025 57 FSCASNQVAQVLLTLPYSFSQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (347)
Q Consensus 57 ~nl~~~~iG~GiLsLP~af~~~G--~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~ 134 (347)
..++.+++|+|+..-|-+..+.+ ....+++-++.|+++.-.+. ||.|+-..-++.+-+|- | ..++|
T Consensus 21 ~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~gal----cyaELGT~ipksGgd~a-----y---i~~af 88 (479)
T KOG1287|consen 21 SLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGAL----CYAELGTSIPKSGGDYA-----Y---ISEAF 88 (479)
T ss_pred eEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHH----HHHHHhccccCCCcchh-----h---HHHHh
Confidence 55677899999999998876655 23333334444444443333 67787766666655442 2 24578
Q ss_pred cccchhhhhhhHHHHHHHHH--HHHHHhhccc-cccccc-ccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH-
Q 019025 135 GPYWKAVGLAFNCTFLLFGS--VIQLIACASN-IYYIND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT- 209 (347)
Q Consensus 135 G~~~~~~~~~~~i~~~~~g~--v~~li~~~~~-l~~~~~-~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~- 209 (347)
|+.+.-...-+... ....+ .++-+.+++- +....+ ....+.+.-.++.+++.+....|..+.|+.+.+-.+.+.
T Consensus 89 g~~~aF~~~wvs~l-~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~ 167 (479)
T KOG1287|consen 89 GPFPAFLFLWVSLL-IIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIA 167 (479)
T ss_pred ccchhHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 88765431211111 11121 2333333432 222111 122333444445555555555677778877766555442
Q ss_pred -HHH-HHHHHhhhh---cccCCCCCC---CC-chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHH
Q 019025 210 -YTA-WYLTIAAVV---HGQVEGASH---TA-PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY 279 (347)
Q Consensus 210 -~~~-~~i~v~~~~---~g~~~~v~~---~~-p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~ 279 (347)
..+ ..+.+.++. .|..++.++ ++ ..+..++-.++=.-.|+|.|=...--+-+|+|||+| +|+.+..++.+
T Consensus 168 Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~l 247 (479)
T KOG1287|consen 168 KLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPL 247 (479)
T ss_pred HHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHH
Confidence 222 223333333 232222221 11 123455666777889999999999999999999988 89999999999
Q ss_pred HHHHHhhhhhhhhhhc
Q 019025 280 VFTLTIPSATAVYWSF 295 (347)
Q Consensus 280 ~~~ly~~~g~~gY~af 295 (347)
++++|+++=++.+-+-
T Consensus 248 vt~iYil~NvAy~~vl 263 (479)
T KOG1287|consen 248 VTVIYVLVNVAYFTVL 263 (479)
T ss_pred HHHHHHHhHhheeEec
Confidence 9999999877665433
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00077 Score=67.14 Aligned_cols=63 Identities=13% Similarity=0.186 Sum_probs=55.6
Q ss_pred HHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025 236 LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298 (347)
Q Consensus 236 ~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~ 298 (347)
...+..++....++|.|-......-+|+|||+| .+|.+..++..+.++|+..........+++
T Consensus 200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~ 263 (466)
T COG0531 200 FGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAG 263 (466)
T ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 346778889999999999999999999999965 799999999999999999999888887763
No 44
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=97.98 E-value=5.4e-05 Score=66.85 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 019025 57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISV 103 (347)
Q Consensus 57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~ 103 (347)
.-++|-++|+|-|+||.||+.+||+.++.++.+.+.++.-+...+..
T Consensus 19 lymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvie 65 (319)
T KOG3832|consen 19 LYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIE 65 (319)
T ss_pred hhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999887765544
No 45
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.93 E-value=0.00014 Score=73.45 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=121.3
Q ss_pred hhhhhhhhhc-hHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccc
Q 019025 60 ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (347)
Q Consensus 60 ~~~~iG~GiL-sLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~ 138 (347)
+.+++|+|++ +.+.+..+.|.....+..++.+++...++.-+ .|..++.++.+-. .+.+++.+||+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~----~ems~~~p~~Gg~--------y~y~~~~lg~~~ 74 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSL----AEMSRRFPSAGGF--------YAYASRGLGPAL 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhh----hhhhhhhccccch--------hhhhhhccCCcC
Confidence 4567888865 47889999998766666666666665555544 3555555544322 356677889887
Q ss_pred hhhhhhhHHHH-HHHHHHHHHHhhccccccc--ccccc-cchh----hHhHHHHHHHhhccCCCCchhHHHHH-HHHHHH
Q 019025 139 KAVGLAFNCTF-LLFGSVIQLIACASNIYYI--NDRLD-KRTW----TYIFGACCATTVFIPSFHNYRIWSFL-GLGMTT 209 (347)
Q Consensus 139 ~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~--~~~~~-~~~~----~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~~~~ 209 (347)
+.. .+....+ ............+..+++. ..... ...| ..++.+++..+.+. ..+..+..... ..+..+
T Consensus 75 Gf~-~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~ 152 (478)
T PF00324_consen 75 GFA-AGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLI 152 (478)
T ss_pred Cce-eeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhh
Confidence 653 2222111 1111112222222222222 11112 2223 33333333333332 23333332221 111111
Q ss_pred HHHHHHHHhh-h--hcc-cCCCC-------C--CCCc--------hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc
Q 019025 210 YTAWYLTIAA-V--VHG-QVEGA-------S--HTAP--------TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 268 (347)
Q Consensus 210 ~~~~~i~v~~-~--~~g-~~~~v-------~--~~~p--------~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~ 268 (347)
..+ .+.+.. + ..+ .+.+. . ..-| .++.+++.++....++|.|-......-+|.|||+|
T Consensus 153 ~li-~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k 231 (478)
T PF00324_consen 153 ALI-AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK 231 (478)
T ss_pred Hhh-hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence 111 111222 1 111 11111 0 0011 13677899999999999999999999999999997
Q ss_pred -chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025 269 -FKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 269 -f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~ 299 (347)
.+|....+...+.++|+......=...|.+.
T Consensus 232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 7899888888888888887776655665544
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.85 E-value=0.0048 Score=62.26 Aligned_cols=61 Identities=10% Similarity=-0.042 Sum_probs=46.7
Q ss_pred HHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCc
Q 019025 237 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGD 297 (347)
Q Consensus 237 ~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~ 297 (347)
..++.+.....|+|.|-.....+-+|+|||+| .+|.+..+..++.++|.+.-+......++
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34555667788999999999999999999987 79999888887776665555544444454
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.68 E-value=0.0054 Score=62.28 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhh
Q 019025 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAV 291 (347)
Q Consensus 238 ~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~g 291 (347)
.++.++....|+|.|-......-+|+|||+| .+|.+..+...+..+|++...+.
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999986 89999999998889988764433
No 48
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0055 Score=60.61 Aligned_cols=226 Identities=13% Similarity=0.243 Sum_probs=123.9
Q ss_pred HHHhhhhhhhhh-chHHHHHHHhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025 57 FSCASNQVAQVL-LTLPYSFSQMGMLSGILLQ-IFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (347)
Q Consensus 57 ~nl~~~~iG~Gi-LsLP~af~~~G~v~Giill-i~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~ 134 (347)
+-.+.+.||+|+ |+--.+.+.+| +++++- ++.|++...-+..|. |....++.+ . |+.+.+++.+
T Consensus 22 lIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLG----Em~~~~p~~-g-------SF~~~a~~~l 87 (462)
T COG1113 22 LIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALG----EMLVANPVS-G-------SFSDYARKYL 87 (462)
T ss_pred HHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHH----HHHHhCCCC-C-------cHHHHHHHHh
Confidence 455678899995 56777888888 444432 333344444444444 333333322 1 4568899999
Q ss_pred cccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHH----HHhhccCCCCchhHH-HHHHHHHH
Q 019025 135 GPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACC----ATTVFIPSFHNYRIW-SFLGLGMT 208 (347)
Q Consensus 135 G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~----~pl~~i~sl~~l~~~-S~~g~~~~ 208 (347)
|++++.. .+-.--+ ...-+...+.+.+.-+++..++. ..|+.....+. .=+.-.|.+.++-+| +++=++.+
T Consensus 88 G~~Agf~-tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aI 164 (462)
T COG1113 88 GPWAGFL-TGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--PQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAI 164 (462)
T ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987754 2222111 11123445555554444433333 56754333222 223335555555554 22222221
Q ss_pred H-HHHHHH-HHhhhhccc--CCC----CCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH----
Q 019025 209 T-YTAWYL-TIAAVVHGQ--VEG----ASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY---- 273 (347)
Q Consensus 209 ~-~~~~~i-~v~~~~~g~--~~~----v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~---- 273 (347)
+ ++++.+ .+.....+. +.+ ++|.+ |+.+.+++.++-+.+|||+|.-.+=---.|-|||+| .+|..
T Consensus 165 i~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~ 244 (462)
T COG1113 165 IAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVI 244 (462)
T ss_pred HHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhh
Confidence 1 111111 111111111 112 23443 788899999999999999999988888899999998 44543
Q ss_pred -HHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025 274 -LFATLYVFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 274 -~~s~~~~~~ly~~~g~~gY~afG~~~ 299 (347)
.+...++..+.+++.+.-+=.++++.
T Consensus 245 ~RI~iFYvgsl~vi~~l~PW~~~~~~~ 271 (462)
T COG1113 245 WRILIFYVGSLFVILSLYPWNQIGEDG 271 (462)
T ss_pred HHHHHHHHHHHHHHheeccccccCCCC
Confidence 34555667777777887776666644
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.59 E-value=0.0057 Score=62.38 Aligned_cols=49 Identities=6% Similarity=0.136 Sum_probs=40.6
Q ss_pred hhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhh
Q 019025 241 TGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSAT 289 (347)
Q Consensus 241 ~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~ 289 (347)
..+..++|+|.|-......-+|||||+| ++|.+..+...+.++|.+..+
T Consensus 198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 198 VVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 3444568999999999999999999986 999999998888888876443
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00055 Score=70.19 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=121.5
Q ss_pred hhhhhhhhhch-HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccchhhcHHHHhHhhhccc
Q 019025 60 ASNQVAQVLLT-LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKE-NVSFKNHVIQWFEVLDGLLGPY 137 (347)
Q Consensus 60 ~~~~iG~GiLs-LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~-~~~~~~~~~~y~ev~~~~~G~~ 137 (347)
+.+.+|+|+.- ...+.++.|=..=++..++.+ ...++...||.|+..+.|+. +.-| .-+....|+-
T Consensus 42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g----~~~~~~~~~~~E~~~~~P~~aGs~~--------~ya~~~i~e~ 109 (554)
T KOG1286|consen 42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAG----IAALLSALCLGEFAVRFPVSAGSFY--------TYAYRFVGES 109 (554)
T ss_pred ecceeccceEEeccHHHhccCChhHHHHHHHHH----HHHHHHHHHHHHHheecccccccce--------eeeeeeeCcH
Confidence 45789999875 666777777443333333333 34444555677888887763 2212 1233445665
Q ss_pred chhhhhhhHHHH-HHHHHHHHHHhhcccccccc---------cccccchhhHhHHH--HHHHhhccCCCCchhHHHHHHH
Q 019025 138 WKAVGLAFNCTF-LLFGSVIQLIACASNIYYIN---------DRLDKRTWTYIFGA--CCATTVFIPSFHNYRIWSFLGL 205 (347)
Q Consensus 138 ~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~---------~~~~~~~~~~i~~~--~~~pl~~i~sl~~l~~~S~~g~ 205 (347)
|+-. ++.+..+ .+.++-..+..++..+++++ +......|..++.+ +++.+.-.+-+-..++++.+.-
T Consensus 110 ~aF~-~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~k 188 (554)
T KOG1286|consen 110 LAFA-IGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNK 188 (554)
T ss_pred HHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHH
Confidence 5533 3333322 11222233334444445543 45555677655543 3334444555455555544333
Q ss_pred HHHH--HHHH-HHHHhhhhcccCCCC------CCC---CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025 206 GMTT--YTAW-YLTIAAVVHGQVEGA------SHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI 272 (347)
Q Consensus 206 ~~~~--~~~~-~i~v~~~~~g~~~~v------~~~---~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v 272 (347)
+.+. +..+ ++++.+...+++.++ .++ .|..+.+++.++.+..|+|.|--.+-..-+|-|||+| .++.
T Consensus 189 vl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~a 268 (554)
T KOG1286|consen 189 ILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKA 268 (554)
T ss_pred HHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHH
Confidence 3221 1111 111222222221122 111 1334677788999999999999999999999999987 7888
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 019025 273 YLFATLYVFTLTIPSATA 290 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~ 290 (347)
...++..++++|+.+.+.
T Consensus 269 i~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 269 IKQSLLRILLFYILSSIV 286 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877654
No 51
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.14 E-value=0.04 Score=55.57 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=44.7
Q ss_pred hHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025 245 NILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298 (347)
Q Consensus 245 ~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~ 298 (347)
.+.|+|.|-......-+|+|||+| .+|.+..+...+.++|++..+......+++
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~ 256 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPRE 256 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHh
Confidence 467899999999999999999987 899999999999999988766554444443
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.97 E-value=0.031 Score=56.56 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=123.9
Q ss_pred HHHhhhhhhhhhc-hHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025 57 FSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (347)
Q Consensus 57 ~nl~~~~iG~GiL-sLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G 135 (347)
+..+.+.||+|++ +.-.+.+++|=..-++.-++.+.+.+.++.-|.+ +....|.. -+|. .-+.+..+
T Consensus 53 MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGE----ma~~~P~s-GsF~-------~ya~rfvd 120 (541)
T COG0833 53 MIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGE----LAVFYPVS-GSFS-------TYATRFVD 120 (541)
T ss_pred HHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCC-Cchh-------hhhhhhcC
Confidence 5566789999964 6999999999887777788888887777777764 34434422 2243 33444445
Q ss_pred ccchhhhhhhHHHHHHHH--HHHHHHhhcccccccc-cccccchhhHhHHHHHHHhhc--cCCCCchhHH-HHHHHHHHH
Q 019025 136 PYWKAVGLAFNCTFLLFG--SVIQLIACASNIYYIN-DRLDKRTWTYIFGACCATTVF--IPSFHNYRIW-SFLGLGMTT 209 (347)
Q Consensus 136 ~~~~~~~~~~~i~~~~~g--~v~~li~~~~~l~~~~-~~~~~~~~~~i~~~~~~pl~~--i~sl~~l~~~-S~~g~~~~~ 209 (347)
+-++.. ++.+-.+ ..- .-..++.++..+++.+ +..+...|..+|.++++.+-. .|.+.+.-+| |.+=+++.+
T Consensus 121 pa~GFa-~gWnYw~-~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii 198 (541)
T COG0833 121 PAFGFA-LGWNYWL-NWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTII 198 (541)
T ss_pred chHHHH-HHHHHHH-HHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHH
Confidence 543322 2222211 111 1235666666677765 345778898888876665544 4555555544 333333322
Q ss_pred -HHHH-HHHHhhhhcccCC-C---CCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025 210 -YTAW-YLTIAAVVHGQVE-G---ASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV 280 (347)
Q Consensus 210 -~~~~-~i~v~~~~~g~~~-~---v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~ 280 (347)
++.+ ++++.+...++.+ + +.+++ +..+.++...+-+..|||.|.-++----.|-+||+| .+|.+...+-=+
T Consensus 199 ~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRI 278 (541)
T COG0833 199 GFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRI 278 (541)
T ss_pred HHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHH
Confidence 2111 1112222222111 1 11222 345777788888999999999888888889999988 555554443333
Q ss_pred HHHH
Q 019025 281 FTLT 284 (347)
Q Consensus 281 ~~ly 284 (347)
+++|
T Consensus 279 l~FY 282 (541)
T COG0833 279 LLFY 282 (541)
T ss_pred HHHH
Confidence 4444
No 53
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=96.84 E-value=0.14 Score=51.73 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 238 ~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
.++.++....|+|.|-......-+|+|||+| .+|.+..+..+..+++++..+.-+...+
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666678999999999999999999987 7899888877665544443333343444
No 54
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.22 Score=49.68 Aligned_cols=191 Identities=12% Similarity=0.091 Sum_probs=97.3
Q ss_pred HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccC--CCCchhHHHHHH
Q 019025 128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIP--SFHNYRIWSFLG 204 (347)
Q Consensus 128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~--sl~~l~~~S~~g 204 (347)
.+.|..||+++.++ ..+...+.+.| ..+..+.+++... .++..+...|+++.++++..+++.- -++.+..++..-
T Consensus 85 i~sR~~fG~~Gs~l-~sll~~~~~iGW~~v~~~l~~~a~~-~~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~ 162 (442)
T COG1457 85 ILSRYPFGVKGSIL-PSLLNGITLIGWFGVNVILSGIAIG-SGTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPL 162 (442)
T ss_pred eeecccccchhHHH-HHHHHHHHHhhHHHHHHHHhccccc-cCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67888999998876 55555566667 5667776665421 1245566677788887777776643 344444333322
Q ss_pred HHHHHHHHHHHHHhhhhc--ccCCCCCCCCchhHHHHHhhhhhHH-HhcccccchHhHHHhcCCCc--cchhHHHHHHHH
Q 019025 205 LGMTTYTAWYLTIAAVVH--GQVEGASHTAPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQ--KFKYIYLFATLY 279 (347)
Q Consensus 205 ~~~~~~~~~~i~v~~~~~--g~~~~v~~~~p~~~~~~f~a~g~i~-faF~gh~~~~~I~~~M~~P~--~f~~v~~~s~~~ 279 (347)
.+. ++. +. +..+.+ +......-..|.+...+..++...+ +.-..-....+..+-+|+|+ |.-.....+...
T Consensus 163 ~~~-lf~--~l-~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l 238 (442)
T COG1457 163 LLL-LFL--YL-LALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFL 238 (442)
T ss_pred HHH-HHH--HH-HHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHH
Confidence 221 111 11 122222 1111111122444444444443322 22234456778888888877 322223334444
Q ss_pred HHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhh
Q 019025 280 VFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQV 327 (347)
Q Consensus 280 ~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~ 327 (347)
...+-..+|.+.-.+=|+.... .+....+.+ +...+.+..++...
T Consensus 239 ~~~~~~ilGa~~a~a~g~~~~~-~~~~~~~G~--~g~~~~lil~l~~~ 283 (442)
T COG1457 239 GTSFMMILGAALAAAAGNADSI-ADVMLGLGG--FGLPAILILVLGTV 283 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCchH-HHHHHhccc--HHHHHHHHHHHHHH
Confidence 5555666777777777765521 233333332 44444444444443
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.46 E-value=0.36 Score=48.32 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=85.5
Q ss_pred HHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccc----ccccc---cc------cchhhHhHHHHHHHhhccC
Q 019025 127 FEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIY----YINDR---LD------KRTWTYIFGACCATTVFIP 192 (347)
Q Consensus 127 ~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~----~~~~~---~~------~~~~~~i~~~~~~pl~~i~ 192 (347)
..+.|..||+++.++ ..+.-.+...| ..++....++.+. .+.+. .. ...+.+++.++.+++....
T Consensus 79 ~v~sR~~FG~~Gs~~-~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~ 157 (442)
T TIGR00800 79 PVLSRASFGIYGSLL-PSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFF 157 (442)
T ss_pred chhhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcC
Confidence 478899999998875 33333333333 3334333332221 11111 11 1122345555666655554
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhh--cccCC--CCC--CCCchhHHHHHhhhhhHHHh-cccccchHhHHHhcCC
Q 019025 193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HGQVE--GAS--HTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWK 265 (347)
Q Consensus 193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~--~g~~~--~v~--~~~p~~~~~~f~a~g~i~fa-F~gh~~~~~I~~~M~~ 265 (347)
-.+-.+.....+......+. .+.+.... ++..+ ... .+++.....++.++...+-. -..-.+.++.-+.+|+
T Consensus 158 g~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 158 GYKIRHLFEWLAVVPPFAAF-GMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 44444334444433211111 11111121 22211 111 12233344555555443322 2444578999999999
Q ss_pred CccchhHHHHHHHHHHHHHhhhhhhhhhh----cCccccccccccccC
Q 019025 266 PQKFKYIYLFATLYVFTLTIPSATAVYWS----FGDQLLNHSNAFSLL 309 (347)
Q Consensus 266 P~~f~~v~~~s~~~~~~ly~~~g~~gY~a----fG~~~~~~~nil~~l 309 (347)
|++-.+....+.....+....+|+.+-.+ +|+..-+..+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~ 284 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARF 284 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHh
Confidence 88755555556665666666666666655 887654322333433
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.17 E-value=0.17 Score=48.18 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=71.8
Q ss_pred HHHhhhhhhhhhch---HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhh
Q 019025 57 FSCASNQVAQVLLT---LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGL 133 (347)
Q Consensus 57 ~nl~~~~iG~GiLs---LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~ 133 (347)
|-.+.+.+|+|.-+ .=.=|..-|+. |..-.++.+.+-..++.++.+. ..+-+ . .+|.|+-+..
T Consensus 10 f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~i----g~~f~--a-------~~y~~~~~~v 75 (349)
T COG3949 10 FAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTI----GKKFN--A-------TSYREILKYV 75 (349)
T ss_pred HHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHH----HHHhc--c-------cchHHHHHHH
Confidence 34455778888665 33334555665 6666666677766677666432 11111 0 1478999999
Q ss_pred hcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhh--HhHHHHHHHhhccCCCCch
Q 019025 134 LGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWT--YIFGACCATTVFIPSFHNY 197 (347)
Q Consensus 134 ~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~--~i~~~~~~pl~~i~sl~~l 197 (347)
+||++.++ .+..+.+.+++ |++-+-..++++ ++.++-..|. ++....+..+.++++.+.+
T Consensus 76 ~~~~~~ki-~d~~iif~lf~~~vVM~AGags~~---~e~~~lP~wiGali~i~~v~i~lfl~~vegi 138 (349)
T COG3949 76 SGPKFAKI-IDIIIIFFLFSTAVVMLAGAGSLL---EEMFGLPYWIGALIIILLVLILLFLGRVEGI 138 (349)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhccchhHH---HHHhCccHHHHHHHHHHHHHHHHHHhcccce
Confidence 99999987 55555666666 444443223233 4455666775 3444445556667766665
No 57
>PRK11375 allantoin permease; Provisional
Probab=95.66 E-value=1.2 Score=45.28 Aligned_cols=64 Identities=5% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHhhhhhHHHhcc-cccchHhHHHhcCCCccchhHHHHHHHHHHHHHhhhhhhh----hhhcCcccc
Q 019025 237 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAV----YWSFGDQLL 300 (347)
Q Consensus 237 ~~~f~a~g~i~faF~-gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~~g~~g----Y~afG~~~~ 300 (347)
..+..++...+-+|. +-.+.|+.-+..|+|++-.+.-..+......+...+|+.. ...||+...
T Consensus 227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~ 295 (484)
T PRK11375 227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTW 295 (484)
T ss_pred HHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 334444433333444 4447889999988887644433334443333332233222 446676554
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.65 E-value=0.19 Score=50.03 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=44.0
Q ss_pred cchHHHHHHHhhhhhhhh-hchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019025 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS 110 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~G-iLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~ 110 (347)
-|.+|+.+....+++|+| +++.|.|.+..| -.+++.+-+.++++.-+.+.-+.+-.+||+
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE 107 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 588999999999999998 999999988888 235555656666665555554444345554
No 59
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.60 E-value=2.1 Score=43.69 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=45.4
Q ss_pred hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025 235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299 (347)
Q Consensus 235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~ 299 (347)
+-..+..++-+-..++.|-.....+-+|-||+++ -++.+..+..+..++=..+-+.-..+-+|+.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3455666788888899999999999999999987 5777766666555554444444445556433
No 60
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.86 E-value=0.61 Score=45.33 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025 53 WDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGF----LGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 128 (347)
Q Consensus 53 ~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~----l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e 128 (347)
+--+-|=..++-|+|-+-=|..-++-||+++.+.+++-+. +-.|...++ +.|++.+ |..|
T Consensus 55 ~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~-------SvR~~G~---------Si~~ 118 (376)
T PF02554_consen 55 WVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA-------SVRHKGK---------SIGE 118 (376)
T ss_pred HHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh-------hhcCCCc---------cHHH
Confidence 3444667789999999999999999999999988765433 334444333 2333322 4689
Q ss_pred HhHhhhcccchhhhhhhHHHH
Q 019025 129 VLDGLLGPYWKAVGLAFNCTF 149 (347)
Q Consensus 129 v~~~~~G~~~~~~~~~~~i~~ 149 (347)
++++.+||+.|++...++...
T Consensus 119 i~~~~lG~~~~~lf~~f~~~~ 139 (376)
T PF02554_consen 119 IAGKYLGKRAKKLFLIFIFFL 139 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998755444433
No 61
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=94.27 E-value=7.1 Score=39.76 Aligned_cols=136 Identities=14% Similarity=0.061 Sum_probs=69.5
Q ss_pred Hhhhhhh-hhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhccc
Q 019025 59 CASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPY 137 (347)
Q Consensus 59 l~~~~iG-~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~ 137 (347)
...+..+ .-++++|-...+.|+. +....+............+.+-..++. + ++...|..|..+.-||++
T Consensus 49 ~~as~~s~~t~lG~~g~ay~~G~~-~~~~~~~~~~~~~~~~~~~~~rl~~~~-~--------~~~~~T~~d~l~~Rf~s~ 118 (493)
T COG0591 49 AAASDTSGWTFLGLPGLAYASGLS-GLWIAIGLLIGAFLLWLLFAPRLRRLA-K--------ARGATTIPDFLEARFGSK 118 (493)
T ss_pred HHHHHHHHHHHhcchHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------ccCCccHHHHHHHHcCCh
Confidence 3344444 7789999999999976 333332221222222222222111221 1 112336789999999954
Q ss_pred chhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025 138 WKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (347)
Q Consensus 138 ~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~ 205 (347)
+-+....+.......+ +..|+...+..++...+ .+...-.++.+.++..-..+--+++..++..+=-
T Consensus 119 ~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 119 ILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 4443243333333333 55677665544432222 3333323344555666666777777777766543
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.06 E-value=7.6 Score=39.29 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=42.3
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
+..|..+.-||++..+....+.....+.+ ...|+...+..+..+- ..+....+++.++++...+.+.-++...+...+
T Consensus 109 T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 109 TLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT-GISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred cHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 57899999999775543222222222222 2445554443333221 234444445555566666667777776666554
Q ss_pred HH
Q 019025 204 GL 205 (347)
Q Consensus 204 g~ 205 (347)
-.
T Consensus 188 Q~ 189 (483)
T PRK09442 188 QG 189 (483)
T ss_pred HH
Confidence 43
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=93.84 E-value=8.1 Score=38.87 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=43.2
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
|..|..+.-||++..+....+.....+++ .+.|+...+..++..- .++....+++.++++.-.....-++...++..+
T Consensus 108 T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GG~~av~~td~i 186 (471)
T TIGR02119 108 TINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT-GLSYLTALFIFSSSVLIYTTFGGFRAVALTDAI 186 (471)
T ss_pred cHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999776554333333333333 2345544443332221 234334445555556666666667776666555
Q ss_pred HH
Q 019025 204 GL 205 (347)
Q Consensus 204 g~ 205 (347)
-.
T Consensus 187 Q~ 188 (471)
T TIGR02119 187 QG 188 (471)
T ss_pred HH
Confidence 43
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=92.95 E-value=8.6 Score=37.81 Aligned_cols=168 Identities=9% Similarity=0.058 Sum_probs=80.4
Q ss_pred HHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccc----cccccchhhHhHHHHHHHhhccCCCCchhHH
Q 019025 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIW 200 (347)
Q Consensus 126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~----~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~ 200 (347)
+.-+.|..||+++.++.. +.......| -.+|....++.++.+. +......|..+++++..+.++. -+|.++++
T Consensus 60 ~~v~sR~~FG~~Gs~~~~-~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~ 137 (386)
T TIGR02358 60 AMGSLKLSLGSKGSVLPS-LLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL 137 (386)
T ss_pred HHHHHHHHHccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 467899999999887632 222233333 2334333333332221 1112234555666656666653 35666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHH-HhcccccchHhHHHhcCCCccchhHHHHHHHH
Q 019025 201 SFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQKFKYIYLFATLY 279 (347)
Q Consensus 201 S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~-faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~ 279 (347)
..++..........+.+....+...++.. ..|.+ ..+..++.... +.-..-...++..+..|+|+|--..-..+...
T Consensus 138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i 215 (386)
T TIGR02358 138 NNWSVWLLLIATLWLLVVVFSKADLSELW-NRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI 215 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhc-CCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence 66655443322222222222221111111 11111 22222222211 10122334788888888887754445555566
Q ss_pred HHHHHhhhhhhhhhhcCc
Q 019025 280 VFTLTIPSATAVYWSFGD 297 (347)
Q Consensus 280 ~~~ly~~~g~~gY~afG~ 297 (347)
...+...+|...-.+.|+
T Consensus 216 ~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 216 GSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 666667777766666654
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=92.25 E-value=9.1 Score=37.86 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=72.8
Q ss_pred HHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 204 (347)
Q Consensus 126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g 204 (347)
+..+.|..||+++.++...+. .+...| ..++....+..++...+ .+...+.++++++..+.++.. .+.+++..-++
T Consensus 73 ~~v~sR~~FG~~Gs~l~~~~~-~i~~igW~av~~~~~~~~l~~~~~-~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 149 (404)
T PRK11017 73 THLLARFSFGEKGSWLPSLLL-GFTQVGWFGVGVAMFAIPVVKATG-LDINLLIVLSGLLMTVTAYFG-ISALTILSRIA 149 (404)
T ss_pred HHHHHHHHhchhHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 568999999999887633222 223333 22233222222222111 223346667777777766654 34444444433
Q ss_pred HHHHHHHHHHHHHhhhhc--ccCCCCCCCCchhHHHHHhhhhhHHHhc-ccccchHhHHHhcCCCccchhHHHHHHHHHH
Q 019025 205 LGMTTYTAWYLTIAAVVH--GQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQKFKYIYLFATLYVF 281 (347)
Q Consensus 205 ~~~~~~~~~~i~v~~~~~--g~~~~v~~~~p~~~~~~f~a~g~i~faF-~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~ 281 (347)
........+...+..+.+ |.. +.....|.+...+..++...+=.+ ..-.+.++.-+..|+|++--..-..+.....
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~ 228 (404)
T PRK11017 150 VPAIALLGGYSVWLAVNDVGGLD-GLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGN 228 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCchh-hhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHH
Confidence 322111111111112221 111 111111211223344443322222 3345788888888877652222222333333
Q ss_pred HHHhhhhhhhhhhcCc
Q 019025 282 TLTIPSATAVYWSFGD 297 (347)
Q Consensus 282 ~ly~~~g~~gY~afG~ 297 (347)
++...+|...-.+.|+
T Consensus 229 ~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 229 SLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3344445444445554
No 66
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.90 E-value=14 Score=36.40 Aligned_cols=207 Identities=14% Similarity=0.102 Sum_probs=94.4
Q ss_pred HHhhhhhhhhhchHHHHH-HHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025 58 SCASNQVAQVLLTLPYSF-SQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 134 (347)
Q Consensus 58 nl~~~~iG~GiLsLP~af-~~~G--~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~ 134 (347)
-++.-.+|+|.|=.|-.. .++| |.++.+..++.++..-..+.+- .++.+- .|.++.++ +
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~a----------v~~~gG-------~~~~l~~~-~ 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIA----------LALVGG-------GYDSLSAR-I 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhe----------eeecCC-------CHHHHHHH-h
Confidence 456677899999877654 4444 6667766666655543333221 111111 24566654 4
Q ss_pred cccchhhhhhhHHHHHHHH-H--------HHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025 135 GPYWKAVGLAFNCTFLLFG-S--------VIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (347)
Q Consensus 135 G~~~~~~~~~~~i~~~~~g-~--------v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~ 205 (347)
||+...+ . ....+++.| + +.|-+.+... +... .......+++++.+-+++.=+++.-|....+|-
T Consensus 65 g~~f~~l-f-~~~~~l~iGP~~aiPRtaa~s~e~~i~p~---~~~~-~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk 138 (378)
T TIGR00796 65 GKVFGIL-F-TVILYLTIGPLFAIPRTATVSFEMGIAPL---LHSP-TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGK 138 (378)
T ss_pred ChHHHHH-H-HHHHHHHHHhchhhhHHHHHHHHHHHHhc---cCcc-cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHH
Confidence 7765543 1 122333444 1 2333322211 1111 112333455555555544444445566777776
Q ss_pred HHHHH---HHHHHHHhhhhcccCC---C-CCCC--Cc--hhHH-HH--HhhhhhHHHhcccccchHhHHH-hcCCCcc-c
Q 019025 206 GMTTY---TAWYLTIAAVVHGQVE---G-ASHT--AP--TKLV-LY--FTGATNILYTFGGHAVTVEIMH-AMWKPQK-F 269 (347)
Q Consensus 206 ~~~~~---~~~~i~v~~~~~g~~~---~-v~~~--~p--~~~~-~~--f~a~g~i~faF~gh~~~~~I~~-~M~~P~~-f 269 (347)
+.+-. ....+.+.++.+...+ + .++. .| ..+. .+ +-+++-+.| |-.++-.+.+ ++|||+| .
T Consensus 139 ~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~f---g~iiv~~i~~~g~~~~~~~~ 215 (378)
T TIGR00796 139 FLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVF---GIIVVNAIRSRGVTKPKKIT 215 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCHHHHH
Confidence 65421 1122334455442211 0 1111 11 0111 11 112222222 4455566666 9999877 5
Q ss_pred hhHHHHHHHH---HHHHHhhhhhhh
Q 019025 270 KYIYLFATLY---VFTLTIPSATAV 291 (347)
Q Consensus 270 ~~v~~~s~~~---~~~ly~~~g~~g 291 (347)
|+.+..+... ...+|.-.+..|
T Consensus 216 ~~~i~~G~ia~i~l~~vY~~L~~lG 240 (378)
T TIGR00796 216 KYTIKAGLIAAVLLAFIYLSLFYLG 240 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666665532 334444444444
No 67
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=90.69 E-value=2.3 Score=43.38 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025 55 AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLG----SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 130 (347)
Q Consensus 55 a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~----~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~ 130 (347)
.|-|=+.++-|+|-+-=|.--+|.||.+|.+-+++-.++. .|.+..+ +.|++.+ |-.|++
T Consensus 57 lfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~-------SvR~~G~---------Si~~ia 120 (575)
T COG1966 57 LFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLML-------SVRHGGK---------SIGEIA 120 (575)
T ss_pred hhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheee-------eeccCCc---------cHHHHH
Confidence 3456677899999999999999999999999887643332 2222221 2233211 468999
Q ss_pred HhhhcccchhhhhhhH
Q 019025 131 DGLLGPYWKAVGLAFN 146 (347)
Q Consensus 131 ~~~~G~~~~~~~~~~~ 146 (347)
++-+|+..|.+.....
T Consensus 121 ~~~lG~~a~~~~~~~~ 136 (575)
T COG1966 121 GKYLGRTAKVFFLLLA 136 (575)
T ss_pred HHHhhhhHHHHHHHHH
Confidence 9999999887644333
No 68
>PRK15015 carbon starvation protein A; Provisional
Probab=90.35 E-value=1.5 Score=45.74 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHh
Q 019025 57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGF----LGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDG 132 (347)
Q Consensus 57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~----l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~ 132 (347)
-|=+.++-|+|-+-=|.--+|.||++|.+.+++-.+ +-.|..... +.|++.+ |..|++++
T Consensus 90 GHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~-------S~R~~Gr---------Sig~ia~~ 153 (701)
T PRK15015 90 GHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV-------STRRDGR---------SLGELVKE 153 (701)
T ss_pred HHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee-------eecCCCc---------cHHHHHHH
Confidence 356778999999999999999999999998876433 222322221 2333221 46899999
Q ss_pred hhcccchhhhhhhH
Q 019025 133 LLGPYWKAVGLAFN 146 (347)
Q Consensus 133 ~~G~~~~~~~~~~~ 146 (347)
-.|++++.+...+.
T Consensus 154 ~iG~~~~~lfli~i 167 (701)
T PRK15015 154 EMGPTAGVIALVAC 167 (701)
T ss_pred HhhHHHHHHHHHHH
Confidence 99999887644333
No 69
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=88.22 E-value=17 Score=36.30 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=50.2
Q ss_pred CcchHHHHHHHhhhhhhhh-hchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025 49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127 (347)
Q Consensus 49 ggS~~~a~~nl~~~~iG~G-iLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ 127 (347)
+-|.+||+...+.+.+|+| +-+...|.+-.|-- .++.+-+.++++.-+-+.=+-+-.+||+|.++. +|+--. .
T Consensus 18 ~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G--~~~GGP---~ 91 (416)
T PF01235_consen 18 GISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDEDG--EYRGGP---M 91 (416)
T ss_pred CcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCC--CEeecH---H
Confidence 4588999999999999999 66699999999933 444454555544444332222223556554321 222110 1
Q ss_pred HHhHhhhcccchh
Q 019025 128 EVLDGLLGPYWKA 140 (347)
Q Consensus 128 ev~~~~~G~~~~~ 140 (347)
--.++.+|+||-.
T Consensus 92 yyi~~gl~~k~la 104 (416)
T PF01235_consen 92 YYIEKGLGSKWLA 104 (416)
T ss_pred HHHHHHhccchHH
Confidence 2345667766554
No 70
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.57 E-value=6.3 Score=38.76 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHHhHhhhcccchhhhhhhHHHHHHHHHHH-HHHhhcccccccccccccchhhHhHHHHHHHhhc
Q 019025 126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVI-QLIACASNIYYINDRLDKRTWTYIFGACCATTVF 190 (347)
Q Consensus 126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g~v~-~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~ 190 (347)
..+++++.+|+.++.+ +...+.+-|+++.+ .+..+++.++...++.+.+.|.+++.++.+-++.
T Consensus 257 l~~~a~~~~G~~G~~l-l~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 257 LSAYSQHLFGSLGSFL-LGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 4589999999988876 66666677777544 4445666655554456677888777665555443
No 71
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=83.34 E-value=19 Score=35.29 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=61.2
Q ss_pred HHHhhhhh-hhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025 57 FSCASNQV-AQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 135 (347)
Q Consensus 57 ~nl~~~~i-G~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G 135 (347)
+.+..+.+ |..+++.|-...+.|+. +....+............+.+ +++ |.+ ..|..|..++-||
T Consensus 15 ~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~---~~r-~~~---------~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 15 FSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAP---RLR-RSG---------AVTIPEYLEKRYG 80 (406)
T ss_dssp HHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHH---HHH-HTT-----------SHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHH---hhc-ccc---------hhhhhhhhhhhcC
Confidence 44455555 44678889988898975 333333333222223333322 222 111 1256799999999
Q ss_pred ccc-hhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHH
Q 019025 136 PYW-KAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG 206 (347)
Q Consensus 136 ~~~-~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~ 206 (347)
++. .+....+........ ...|+...+.-++... ..+....+++.+++++..+..-=++...+...+-.+
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred Cchhhhhhcccccchhhhhhhhccccccccchhhcc-chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 987 333111111111111 2345554443333222 244444555666666667777777777766665544
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=77.78 E-value=90 Score=32.21 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=36.6
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
|..|..+.-||.+.-+....+.....+.. ...|+...+..++.+- ..+...-+++.++++..-+..-=++.-.+.-.+
T Consensus 131 T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 131 TFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLF-GLNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred cHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56788888887554333222222111111 2334444333333221 123222244555566666666656665555544
Q ss_pred H
Q 019025 204 G 204 (347)
Q Consensus 204 g 204 (347)
=
T Consensus 210 Q 210 (549)
T TIGR02711 210 K 210 (549)
T ss_pred H
Confidence 3
No 73
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=72.89 E-value=99 Score=30.30 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=39.8
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
+..|..+.-||++..+....+........ ...|+...+.-++... ..+...-+++.++++.-.+..--++...+...+
T Consensus 67 T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~-gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 67 TMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT-GLDLYLSLLLLGAITILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred chhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 56899999999854443222222222222 3445544443333221 123323334444555555666666666666555
Q ss_pred HHH
Q 019025 204 GLG 206 (347)
Q Consensus 204 g~~ 206 (347)
-.+
T Consensus 146 Q~~ 148 (407)
T TIGR00813 146 QAV 148 (407)
T ss_pred HHH
Confidence 433
No 74
>PRK09395 actP acetate permease; Provisional
Probab=71.66 E-value=1.3e+02 Score=31.08 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=37.3
Q ss_pred cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 203 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~ 203 (347)
++.|..+.-||++.-+....+........ ...|+...+..++.+- .++...-+++.++++..-+..-=++...+.-.+
T Consensus 133 T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~-gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 133 TFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF-GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred cHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 57888888888653333222221111111 1334443333333221 233333345555566666666656665555444
Q ss_pred H
Q 019025 204 G 204 (347)
Q Consensus 204 g 204 (347)
-
T Consensus 212 Q 212 (551)
T PRK09395 212 K 212 (551)
T ss_pred H
Confidence 3
No 75
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=69.76 E-value=9.6 Score=38.11 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=66.1
Q ss_pred hhhhhhhc---hHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccc
Q 019025 62 NQVAQVLL---TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 138 (347)
Q Consensus 62 ~~iG~GiL---sLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~ 138 (347)
+.-.-|.- ..-....++|.+.|+.+.++++.+.+-....-. .+ + ...|...=..+++++.+|+.+
T Consensus 208 ~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~----~~----~----~~~~g~~lL~~i~~~~~G~~G 275 (427)
T PF05525_consen 208 AIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSG----SF----P----DDINGAELLSQIANHLFGSAG 275 (427)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc----cc----c----CCCCHHHHHHHHHHHHcChhH
Confidence 33344444 455566677777777777666655433322110 00 0 001111124578899999987
Q ss_pred hhhhhhhHHHHHHHHHHHHHH-hhcccccccccccccchhhHhHHHHHHHhhc
Q 019025 139 KAVGLAFNCTFLLFGSVIQLI-ACASNIYYINDRLDKRTWTYIFGACCATTVF 190 (347)
Q Consensus 139 ~~~~~~~~i~~~~~g~v~~li-~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~ 190 (347)
..+ +...+.+-|+.+.+.++ .|++-.+...++.+.+.|..++.++.+.++-
T Consensus 276 ~~l-l~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 276 QIL-LGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 765 66666666665444444 5666665544467788888887776666543
No 76
>PRK12488 acetate permease; Provisional
Probab=69.54 E-value=1.4e+02 Score=30.76 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=61.6
Q ss_pred HHHHhhhhhhh-hhchHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccccccchhhcHHHHhHhh
Q 019025 56 WFSCASNQVAQ-VLLTLPYSFSQMGMLSGILLQIFYGFLGSWT-AYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGL 133 (347)
Q Consensus 56 ~~nl~~~~iG~-GiLsLP~af~~~G~v~Giilli~~a~l~~yt-~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~ 133 (347)
.+.+..+.+++ -.++.|-...+.|+- +....+. ..++..- ..++.+ +++ |.+ ..|..|..+.-
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~---~lr-~~g---------~~T~~d~l~~R 139 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAE---RLR-NLG---------KYTFADVVSYR 139 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHH---HHH-HCC---------CcchHHHHHHH
Confidence 34455555544 468899888888864 3322211 1111111 111211 111 111 12567888888
Q ss_pred hcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025 134 LGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 205 (347)
Q Consensus 134 ~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~ 205 (347)
||.+..|....+.....+.. ...|+...+..++.+- .++...-+++.++++..-+..-=++.-.+...+-.
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF-GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 88543333222222211111 2345544443333221 12333334455666666666776777776666543
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=68.85 E-value=47 Score=32.89 Aligned_cols=39 Identities=3% Similarity=-0.204 Sum_probs=23.1
Q ss_pred cchHhHHHhcCCCccchhHHHHHHHHHHHHHhhhhhhhh
Q 019025 254 AVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVY 292 (347)
Q Consensus 254 ~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~~g~~gY 292 (347)
.+.++..+.+|++++-++....+..........+++.+-
T Consensus 219 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~ 257 (440)
T PF02133_consen 219 PNASDYSRYAKSDTSAWWGFWLGFPGGFIPFVLVGILGA 257 (440)
T ss_dssp CCCHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHhhCCCCCCcEEEEeehhhhHHHHHHHHHHHHH
Confidence 346688899988777666666665555555555555443
No 78
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=66.26 E-value=98 Score=31.13 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=42.5
Q ss_pred cCcchHHHHHHHhhhhhhhh-hchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 019025 48 HGGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKE 113 (347)
Q Consensus 48 ~ggS~~~a~~nl~~~~iG~G-iLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~ 113 (347)
++-|.|||....+.+.+|+| +-+...|.+-.|-- .++.+=+.|++..-|.+.=+-+-.+||.|.+
T Consensus 61 ~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~ 126 (452)
T COG1115 61 GGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDK 126 (452)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCC
Confidence 44588999999999999999 55699999999933 4444545555554444422222235665543
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=65.59 E-value=1.6e+02 Score=29.81 Aligned_cols=16 Identities=0% Similarity=-0.018 Sum_probs=11.6
Q ss_pred cHHHHhHhhhcccchh
Q 019025 125 QWFEVLDGLLGPYWKA 140 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~ 140 (347)
|-.|..+.-||++.+.
T Consensus 105 T~~e~l~~Ryg~~~~~ 120 (487)
T TIGR02121 105 TLPDFFENRFNDKSRL 120 (487)
T ss_pred cHHHHHHHHhCCCCch
Confidence 5678888899975443
No 80
>PHA02764 hypothetical protein; Provisional
Probab=58.11 E-value=50 Score=31.86 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=43.9
Q ss_pred hhhhccccccCcchHHHHH-HHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 019025 39 MLSMKSFLWHGGSAWDAWF-SCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENV 117 (347)
Q Consensus 39 ~~~~~~~~~~ggS~~~a~~-nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~ 117 (347)
+.++++...+.+ .+|+++ |+.....|.++ +.|+=++... +|.-.+ ..++++.--+....-||.|...+.|+.+-
T Consensus 4 vReSSGLVREvs-~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~--pG~nlL-LAWLLGGLlALPgAL~YAELGSAmPrAGG 78 (399)
T PHA02764 4 ERKSSGIIKSFN-ILDIFSINLLYMGILSGI-SYPLFVSSLL--KNVNLL-FAILIGAVFEIPLLLMYYKLTTKFPLNGG 78 (399)
T ss_pred chhcCCceeecc-HHHHHHHHHHhhccchhH-HHHHHHhhcC--CchhHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 344555555544 567765 77766666654 5565333331 111111 11111111122223345666677777766
Q ss_pred cccchhhcHHHHhHhhhcccchh
Q 019025 118 SFKNHVIQWFEVLDGLLGPYWKA 140 (347)
Q Consensus 118 ~~~~~~~~y~ev~~~~~G~~~~~ 140 (347)
+|. -.++++||+++.
T Consensus 79 dYV--------YISRAFGP~~GF 93 (399)
T PHA02764 79 DYA--------YIRTAFSSKFYT 93 (399)
T ss_pred eEE--------EhHHhhCccHHH
Confidence 653 345678886554
No 81
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=1.3e+02 Score=24.73 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=38.5
Q ss_pred ccccCcchHHHHHHHhh--hhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 019025 45 FLWHGGSAWDAWFSCAS--NQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISV 103 (347)
Q Consensus 45 ~~~~ggS~~~a~~nl~~--~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~ 103 (347)
.|....-.|..|.+... +-+|.++++.-- +.|.+.|.+..++.-....|+..+=.|
T Consensus 27 v~fAnERTfl~wl~~~vllg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~k 84 (126)
T COG5264 27 VWFANERTFLSWLSVTVLLGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLK 84 (126)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556888887664 345555555444 899998888888877788888776543
No 82
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=48.85 E-value=3e+02 Score=27.88 Aligned_cols=80 Identities=11% Similarity=-0.018 Sum_probs=36.4
Q ss_pred cHHHHhHhhhcccchhhh--hhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHH
Q 019025 125 QWFEVLDGLLGPYWKAVG--LAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWS 201 (347)
Q Consensus 125 ~y~ev~~~~~G~~~~~~~--~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S 201 (347)
|-.|..++-||++.+.+. ..+........ ...|+...+..+...- ..+....+++.++++..-+.+-=++.-.+.-
T Consensus 109 T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 109 TLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF-GMSYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred eHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467888888887543321 11111111111 2334433332222211 1333333455556666666666666666655
Q ss_pred HHHH
Q 019025 202 FLGL 205 (347)
Q Consensus 202 ~~g~ 205 (347)
.+-.
T Consensus 188 ~iQ~ 191 (502)
T PRK15419 188 TVQA 191 (502)
T ss_pred HHHH
Confidence 5443
No 83
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=43.45 E-value=3.8e+02 Score=27.44 Aligned_cols=147 Identities=9% Similarity=0.077 Sum_probs=74.8
Q ss_pred HhHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhh--hcccCC--CCC---CCCchhHHHHHhhhhhHHHhc-
Q 019025 179 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAV--VHGQVE--GAS---HTAPTKLVLYFTGATNILYTF- 250 (347)
Q Consensus 179 ~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~--~~g~~~--~v~---~~~p~~~~~~f~a~g~i~faF- 250 (347)
+++.++.++..+ +-++++|++-.++...+.+.+..+.+-.+ .+|..+ +.+ .+++.....++.++...+-.|
T Consensus 176 ~ifW~l~~l~~~-~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 176 FIFWVLQLLVLF-KGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 344555555544 45777887765555444333222333333 333211 111 222333333333332222222
Q ss_pred ccccchHhHHHhcCCCcc--chhH--HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchHHH-HHHHHHHHH
Q 019025 251 GGHAVTVEIMHAMWKPQK--FKYI--YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRD-AAVILMLIH 325 (347)
Q Consensus 251 ~gh~~~~~I~~~M~~P~~--f~~v--~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~-~a~il~~i~ 325 (347)
...-|.|+.-+.-|+|++ .... +-..+.....+=+.++...+..||+..-+.-+++.+++++.... .+-..+++.
T Consensus 255 tl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~ia 334 (497)
T COG1953 255 TLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVA 334 (497)
T ss_pred HHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHH
Confidence 233467777777777654 2222 22233334445566677889999999876568889998765554 444444443
Q ss_pred h
Q 019025 326 Q 326 (347)
Q Consensus 326 ~ 326 (347)
+
T Consensus 335 t 335 (497)
T COG1953 335 T 335 (497)
T ss_pred H
Confidence 3
No 84
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=39.39 E-value=4.5e+02 Score=27.08 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHHHhhhhh-hhhhchHHHHHHHhchh
Q 019025 56 WFSCASNQV-AQVLLTLPYSFSQMGML 81 (347)
Q Consensus 56 ~~nl~~~~i-G~GiLsLP~af~~~G~v 81 (347)
.+.+..+.+ +.-.++.|-...+.|+-
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~ 66 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYD 66 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChH
Confidence 345555555 44577788776677763
No 85
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=39.29 E-value=4.5e+02 Score=27.05 Aligned_cols=135 Identities=10% Similarity=0.071 Sum_probs=73.3
Q ss_pred ccchhh--HhHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhh--hcccCCCCCC--CCc---hhHHHHHhhh
Q 019025 173 DKRTWT--YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAV--VHGQVEGASH--TAP---TKLVLYFTGA 243 (347)
Q Consensus 173 ~~~~~~--~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~--~~g~~~~v~~--~~p---~~~~~~f~a~ 243 (347)
+..+|+ ++|.++.+|..+.| ++++|++-....+.+.+.++.+.+..+ .+|.. ++.+ +.+ .....++.++
T Consensus 183 tt~e~i~FfIFwv~s~~~~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G-~l~~~~st~~gs~~aWa~~~~i 260 (572)
T KOG2466|consen 183 TTYEFIGFFIFWVASLPFYWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLG-HLFDSKSTVSGSAHAWAFVRSI 260 (572)
T ss_pred chHHHHHHHHHHHHhhheeecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCcc-ccccCCCcccccchhHHHHHHH
Confidence 334443 57778888988877 666676655555544444433333333 34421 1211 111 1122333333
Q ss_pred hhHHHhc-ccccchHhHHHhcCCCcc--chhHH--HHHHHHHHHHHhhhhhhhhhhcCccccccccccccC
Q 019025 244 TNILYTF-GGHAVTVEIMHAMWKPQK--FKYIY--LFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL 309 (347)
Q Consensus 244 g~i~faF-~gh~~~~~I~~~M~~P~~--f~~v~--~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~l 309 (347)
.-.+=.| ....|.|..-+=-|+|.+ +..++ -..+.++..+=++++..+|..||.+.=+.-+++.+.
T Consensus 261 ~~~~~~fstl~~N~pDFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 261 MSCIANFSTLIVNAPDFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred HHHHhccchhhccCchhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 3322222 234467777777777865 34433 334445566667788889999999875333555554
No 86
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=37.57 E-value=3.8e+02 Score=25.73 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhc--cCCCCchhH
Q 019025 127 FEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVF--IPSFHNYRI 199 (347)
Q Consensus 127 ~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~--i~sl~~l~~ 199 (347)
.|..++-+||++... ..+...+.... .+..++.++..++.+. ..+...|.++.++.++-+.+ .++.+.+-.
T Consensus 45 ~~~~~~~~g~~~~~~-~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~ 118 (358)
T PF01566_consen 45 AEGIRERFGRGWAWF-LWILIFLANIATQAAEIIGIAIALNLLF-GIPLWIWVLLVAVIAILLLWLSSGGYRRLER 118 (358)
T ss_pred hhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 577777788887765 22222221111 1222332332333333 34556677766666555555 555444443
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=36.22 E-value=92 Score=31.33 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=56.3
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccchhhhhhhHHHHHH
Q 019025 72 PYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLL 151 (347)
Q Consensus 72 P~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~~~~~~~~~i~~~~ 151 (347)
-....++|.+.|+.+.++++.+++--..--. .+ + +.+|...=-..+..+.+|++++.+ ..+.+.+-|
T Consensus 225 ~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~----~~----~----~~~~g~~il~~~~~~~~G~~G~~l-l~iiv~lAC 291 (439)
T PRK15433 225 TRYTVWAGLMAGVGLTLLYLALFRLGSDSAS----LV----D----QSANGAAILHAYVQHTFGGGGSFL-LAALIFIAC 291 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cc----c----CCCcHhHHHHHHHHHHhCHHHHHH-HHHHHHHHH
Confidence 3445566777777776666655443332100 00 0 000111112457788999987765 555555556
Q ss_pred HHHHHHH-HhhcccccccccccccchhhHhHHHHHHHhhcc
Q 019025 152 FGSVIQL-IACASNIYYINDRLDKRTWTYIFGACCATTVFI 191 (347)
Q Consensus 152 ~g~v~~l-i~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i 191 (347)
+.+.+-+ ..+++-++...+ .+.+.|..++.++.++++.+
T Consensus 292 LTTaIGLi~a~a~~f~~~~~-isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 292 LVTAVGLTCACAEFFAQYVP-LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHh
Confidence 6533333 345544433222 56677888888877887654
No 88
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=25.54 E-value=87 Score=30.27 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHhhhhhHHHhccccc--chHhHHH----------hcCCCccch---hHH---HHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025 237 VLYFTGATNILYTFGGHA--VTVEIMH----------AMWKPQKFK---YIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (347)
Q Consensus 237 ~~~f~a~g~i~faF~gh~--~~~~I~~----------~M~~P~~f~---~v~---~~s~~~~~~ly~~~g~~gY~afG~~ 298 (347)
.+.+..+.+..|+|..-. ..||+.+ .|+++++.. |++ ......+.++=....+.|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 466788899999995433 5677776 355554432 222 1222222233334567899999999
Q ss_pred ccccccccccCCC---chHHHHHHHHH
Q 019025 299 LLNHSNAFSLLPK---NRWRDAAVILM 322 (347)
Q Consensus 299 ~~~~~nil~~lp~---~~~~~~a~il~ 322 (347)
.++ +.+.+++.+ +.+.+++-++.
T Consensus 225 ~rE-sgv~~rLs~taqn~l~nivTi~L 250 (360)
T PF03977_consen 225 LRE-SGVVERLSKTAQNELMNIVTIFL 250 (360)
T ss_pred HHH-hccHHHHHHHHHHHHHHHHHHHH
Confidence 986 677777653 33444444433
No 89
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=23.87 E-value=90 Score=20.94 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCcccc
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFGDQLL 300 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~ 300 (347)
...++.+.+++..+.|...|-+||+..+
T Consensus 8 ~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 8 LSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred HHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 3444445556666677777888997654
No 90
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.35 E-value=81 Score=20.87 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhhhhhhhcCcccc
Q 019025 276 ATLYVFTLTIPSATAVYWSFGDQLL 300 (347)
Q Consensus 276 s~~~~~~ly~~~g~~gY~afG~~~~ 300 (347)
+..+..++-.+.|...|-+||...+
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCCCcc
Confidence 3444455556677778889997664
No 91
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.16 E-value=4.1e+02 Score=21.22 Aligned_cols=56 Identities=16% Similarity=0.311 Sum_probs=36.1
Q ss_pred ccccCcchHHHHHHHhh--hhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 019025 45 FLWHGGSAWDAWFSCAS--NQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISV 103 (347)
Q Consensus 45 ~~~~ggS~~~a~~nl~~--~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~ 103 (347)
.|....-.|..|.+... +-+|.++++.-- +.|-+.|.+..++.-..+.|+..+-.|
T Consensus 12 V~fANERTFl~WL~~tvlLg~l~~~l~n~~~---~~g~~~a~v~t~vaif~~~ya~~lYlw 69 (112)
T KOG4580|consen 12 VWFANERTFLSWLSVTVLLGGLGFALYNSGD---RLGILSAYVYTLVAIFCGFYALFLYLW 69 (112)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445777877653 345555555444 888888888887777778888776543
No 92
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.90 E-value=1.8e+02 Score=22.29 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=30.3
Q ss_pred hhHHHhcccccchHhHHHhcCCCccch-hHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025 244 TNILYTFGGHAVTVEIMHAMWKPQKFK-YIYLFATLYVFTLTIPSATAVYWSFG 296 (347)
Q Consensus 244 g~i~faF~gh~~~~~I~~~M~~P~~f~-~v~~~s~~~~~~ly~~~g~~gY~afG 296 (347)
|+++.+-.|...+.+..++-.+|.+.. |++. .+.++.-.-+.+|++.|-.||
T Consensus 18 GIiLL~~ACIFAfidFSK~~s~~~~~~wRalS-ii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 18 GVLLLTAACVFAFVDFSKNTSNVTDYVWRALS-VTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 555555556666667776665666532 3322 222234444577888898888
No 93
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=20.54 E-value=99 Score=29.81 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHhhhhhHHHhccccc--chHhHHH----------hcCCCccc---hhHH---HHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025 237 VLYFTGATNILYTFGGHA--VTVEIMH----------AMWKPQKF---KYIY---LFATLYVFTLTIPSATAVYWSFGDQ 298 (347)
Q Consensus 237 ~~~f~a~g~i~faF~gh~--~~~~I~~----------~M~~P~~f---~~v~---~~s~~~~~~ly~~~g~~gY~afG~~ 298 (347)
.+.+..+.+..|+|..-. .-||+.+ .|+++++. .|++ ....+.+.++=....+.|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 467888899999995433 5677776 35444332 2322 2222222333344567899999999
Q ss_pred ccccccccccCCC
Q 019025 299 LLNHSNAFSLLPK 311 (347)
Q Consensus 299 ~~~~~nil~~lp~ 311 (347)
.++ +.+++++.+
T Consensus 225 lrE-sGv~~rl~~ 236 (354)
T TIGR01109 225 MRE-SGVVERLSK 236 (354)
T ss_pred HHH-hccHHHHHH
Confidence 986 677777753
Done!