Query 019025
Match_columns 347
No_of_seqs 191 out of 1178
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 09:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 8.3 5.8E+02 0.042 21.9 20.9 30 50-79 5-35 (509)
2 d1rh5b_ f.23.28.1 (B:) Preprot 7.7 1.3E+02 0.0097 18.5 2.6 30 262-295 14-45 (56)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 2.3E+02 0.017 15.5 2.1 17 77-93 14-30 (37)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.6 5.7E+02 0.041 20.1 4.9 31 63-93 11-41 (248)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 3.5 4.5E+02 0.033 15.7 3.1 39 273-314 8-46 (57)
6 d1q90g_ f.23.26.1 (G:) PetG su 3.3 3.7E+02 0.027 13.8 2.3 15 78-92 7-21 (30)
7 d1v54d_ f.23.1.1 (D:) Mitochon 2.5 8.2E+02 0.06 17.4 4.3 20 259-278 64-84 (144)
8 d2e74f1 f.23.25.1 (F:1-32) Pet 2.5 4.7E+02 0.035 13.4 2.1 10 78-87 18-27 (32)
9 d1mv8a2 c.2.1.6 (A:1-202) GDP- 2.3 1.7E+02 0.012 22.1 -0.2 15 62-76 4-18 (202)
10 d2adza1 b.55.1.1 (A:1-43,A:117 2.0 3.8E+02 0.028 18.3 1.4 13 54-66 93-105 (105)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=8.33 E-value=5.8e+02 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.7
Q ss_pred cchHHHHHHHhhhhhhhh-hchHHHHHHHhc
Q 019025 50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMG 79 (347)
Q Consensus 50 gS~~~a~~nl~~~~iG~G-iLsLP~af~~~G 79 (347)
+|.++-.+.++...+|.| +.=.||-..+-|
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nG 35 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG 35 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcC
Confidence 456777888889999998 666999986665
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.69 E-value=1.3e+02 Score=18.45 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=15.8
Q ss_pred hcCCCcc--chhHHHHHHHHHHHHHhhhhhhhhhhc
Q 019025 262 AMWKPQK--FKYIYLFATLYVFTLTIPSATAVYWSF 295 (347)
Q Consensus 262 ~M~~P~~--f~~v~~~s~~~~~~ly~~~g~~gY~af 295 (347)
--++|++ |+++...+ .+=.+++|..||..+
T Consensus 14 ~~~KP~~~Ef~~ia~v~----~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 14 VLKKPTKDEYLAVAKVT----ALGISLLGIIGYIIH 45 (56)
T ss_dssp SEECCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3457765 77665433 222345566666543
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.76 E-value=2.3e+02 Score=15.45 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=10.8
Q ss_pred HhchhHHHHHHHHHHHH
Q 019025 77 QMGMLSGILLQIFYGFL 93 (347)
Q Consensus 77 ~~G~v~Giilli~~a~l 93 (347)
+..+.+|++++.+.+++
T Consensus 14 rtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 14 RTSLYLGLLLILVLALL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 44566788777666543
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=5.7e+02 Score=20.05 Aligned_cols=31 Identities=16% Similarity=-0.080 Sum_probs=22.8
Q ss_pred hhhhhhchHHHHHHHhchhHHHHHHHHHHHH
Q 019025 63 QVAQVLLTLPYSFSQMGMLSGILLQIFYGFL 93 (347)
Q Consensus 63 ~iG~GiLsLP~af~~~G~v~Giilli~~a~l 93 (347)
.-..++.+.|.++++.-|+.+++++++.+++
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 41 (248)
T d2r6gf1 11 LGLLVGYLVVLMYAQGEYLFAITTLILSSAG 41 (248)
T ss_dssp HHHHHHHTHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHhe
Confidence 3345577889999999999888777655443
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.52 E-value=4.5e+02 Score=15.71 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchH
Q 019025 273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW 314 (347)
Q Consensus 273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~ 314 (347)
+..+..+.+++-+..+...|.+=.+.- ++-+.++|+..|
T Consensus 8 ~~~~~~~~~i~i~~~s~~~y~~E~~~~---~~~f~sip~a~W 46 (57)
T d2h8pc1 8 AGAATVLLVIVLLAGSYLAVLAERGAP---GAQLITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST---TCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---Cccccccchhhh
Confidence 334444444454556666776654433 233566665543
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.28 E-value=3.7e+02 Score=13.82 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=9.5
Q ss_pred hchhHHHHHHHHHHH
Q 019025 78 MGMLSGILLQIFYGF 92 (347)
Q Consensus 78 ~G~v~Giilli~~a~ 92 (347)
+|.+.|++=..+.|+
T Consensus 7 ~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHH
Confidence 466777766666554
No 7
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.55 E-value=8.2e+02 Score=17.44 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=12.6
Q ss_pred HHHhcCCCcc-chhHHHHHHH
Q 019025 259 IMHAMWKPQK-FKYIYLFATL 278 (347)
Q Consensus 259 I~~~M~~P~~-f~~v~~~s~~ 278 (347)
-..||..|.. .|.++..++.
T Consensus 64 t~ae~~~p~gewK~v~g~~~~ 84 (144)
T d1v54d_ 64 SFAEMNRSTNEWKTVVGAAMF 84 (144)
T ss_dssp CHHHHTCCCSHHHHHHHHHHH
T ss_pred ccccccCCCCchhHHHHHHHH
Confidence 4678888765 5666654444
No 8
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.53 E-value=4.7e+02 Score=13.42 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=5.4
Q ss_pred hchhHHHHHH
Q 019025 78 MGMLSGILLQ 87 (347)
Q Consensus 78 ~G~v~Giill 87 (347)
.||..|.+++
T Consensus 18 vgwglgalll 27 (32)
T d2e74f1 18 VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHh
Confidence 4555565544
No 9
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.31 E-value=1.7e+02 Score=22.12 Aligned_cols=15 Identities=0% Similarity=-0.265 Sum_probs=0.0
Q ss_pred hhhhhhhchHHHHHH
Q 019025 62 NQVAQVLLTLPYSFS 76 (347)
Q Consensus 62 ~~iG~GiLsLP~af~ 76 (347)
+++|.|-+++|.|..
T Consensus 4 ~ViGlG~vGl~~a~~ 18 (202)
T d1mv8a2 4 SIFGLGYVGAVCAGC 18 (202)
T ss_dssp EEECCSTTHHHHHHH
T ss_pred EEECCCHhHHHHHHH
No 10
>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.01 E-value=3.8e+02 Score=18.34 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhh
Q 019025 54 DAWFSCASNQVAQ 66 (347)
Q Consensus 54 ~a~~nl~~~~iG~ 66 (347)
++|||.+.+.++.
T Consensus 93 ~~WF~Aihs~i~~ 105 (105)
T d2adza1 93 RSWAGAIQAQIGT 105 (105)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhcC
Done!