BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019026
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/285 (77%), Positives = 236/285 (82%), Gaps = 14/285 (4%)
Query: 1 MLKPFCNVTDQAQCRFLGLPS------PVPRFRRRYAVVPCSRPMNKPTAPVQVQAIVS- 53
MLK CNVTD R L S PV RRR +V CS+ K T V ++A+VS
Sbjct: 1 MLKLSCNVTDSKLQRSLLFFSHSYRSDPVNFIRRR--IVSCSQ--TKKTGLVPLRAVVSA 56
Query: 54 DQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEV 113
DQGS + G +LAD+LRLG+LTEDGLSYKEKF+VR YEVG NKTATVETIANLLQEV
Sbjct: 57 DQGSVVQ---GLATLADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEV 113
Query: 114 GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIG 173
GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAW DVVEIETWCQSEGRIG
Sbjct: 114 GCNHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIG 173
Query: 174 TRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEEN 233
TRRDWILKD TGEV GRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+E RLAFPEEN
Sbjct: 174 TRRDWILKDSVTGEVTGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPQEPRLAFPEEN 233
Query: 234 SSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLE 278
+ S +KI KLEDPAQYS +GL PRRADLDMNQHVNNVTYIGW+LE
Sbjct: 234 NRSLKKIPKLEDPAQYSMIGLKPRRADLDMNQHVNNVTYIGWVLE 278
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/269 (76%), Positives = 222/269 (82%), Gaps = 5/269 (1%)
Query: 13 QCRFLGLPSPVPRFRRRYAVVPCSRP---MNKPTAPVQVQAIVSDQGSPARLESGPCSLA 69
QCRFL S RRR AV P N QV ++ + E SLA
Sbjct: 10 QCRFL--TSDSISIRRRTAVSRWRSPTFSANYNGVNAQVLGVLKQEQKEIEEEKRSSSLA 67
Query: 70 DRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFA 129
++LRLG+LTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVG NHAQSVGFSTDGFA
Sbjct: 68 EKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDGFA 127
Query: 130 TTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVI 189
TT TMRKLHLIWVTARMHIEIY+YPAWSDVVEIETWCQSEGRIGTRRDWI+KD+AT EVI
Sbjct: 128 TTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDEVI 187
Query: 190 GRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQY 249
GRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+ RL+FPEEN+ S +KISKLEDPAQ+
Sbjct: 188 GRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQH 247
Query: 250 SRLGLIPRRADLDMNQHVNNVTYIGWLLE 278
SRLGL PRRADLDMNQHVNNV YIGW+LE
Sbjct: 248 SRLGLSPRRADLDMNQHVNNVAYIGWVLE 276
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/283 (73%), Positives = 224/283 (79%), Gaps = 11/283 (3%)
Query: 1 MLKPFCNVTDQAQCRFLGLPSPVPRFRRRYAVVPCSRPMNKPTAPVQVQAIVS-DQGSP- 58
MLK CNVTD F R+ + C + +P ++AI+S D G+
Sbjct: 1 MLKLSCNVTDHIHNLFSNSRRIFVPVHRQTRPISCFQLKKEP-----LRAILSADHGNSS 55
Query: 59 ---ARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGC 115
A SG S ADRLR G L EDG SYKEKFIVR YEVGINKTAT+ETIANLLQEV C
Sbjct: 56 VRVADTVSG-TSPADRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVAC 114
Query: 116 NHAQSVGFSTDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR 175
NH Q+VGFSTDGFATT TMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR
Sbjct: 115 NHVQNVGFSTDGFATTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTR 174
Query: 176 RDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSS 235
RDWILKD ATGEVIGRATSKWVMMNQDTRRLQ+V+D+VR+EYLVFCP E RLAFPEEN+S
Sbjct: 175 RDWILKDCATGEVIGRATSKWVMMNQDTRRLQRVTDEVRDEYLVFCPPEPRLAFPEENNS 234
Query: 236 SSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLE 278
S +KI KLEDPAQYS LGL PRRADLDMNQHVNNVTYIGW+LE
Sbjct: 235 SLKKIPKLEDPAQYSMLGLKPRRADLDMNQHVNNVTYIGWVLE 277
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 211 bits (537), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 65 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFS 124
P L D LG++ +DGL +++ F +R YE+G ++TA++ET+ N LQE NH + G S
Sbjct: 119 PDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAGLS 178
Query: 125 TDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYA 184
DGF T M K LIWV A+M + + +YP W D VE+ TW G+ G RRDW++ D
Sbjct: 179 NDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISDCN 238
Query: 185 TGEVIGRATSKWVMMNQDTRRLQKVSDDVREE---YLVFCPRELRLAFPEENSSSSRKIS 241
TGE++ RA+S WVMMNQ TRRL K+ D+VR E + V P + RK+
Sbjct: 239 TGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIE--------DDDRKLP 290
Query: 242 KL-EDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLE 278
KL E A R GL PR DLD+NQHVNNV YIGW+LE
Sbjct: 291 KLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILE 328
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 12/235 (5%)
Query: 68 LADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDG 127
L D +G + +DGL +++ F +R YE+G +++A++ET+ N LQE NH ++ G DG
Sbjct: 123 LVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQETALNHVKTAGLLGDG 182
Query: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGE 187
F +T M K +LIWV RM + + KYP W DVVE++TW G+ G RRDW+++D TGE
Sbjct: 183 FGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNTGE 242
Query: 188 VIGRATSKWVMMNQDTRRLQKVSDDVREE---YLVFCPRELRLAFPEENSSSSRKISKLE 244
+ RA+S WVMMN+ TRRL K+ ++VR E Y V L + SRK++K++
Sbjct: 243 TLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFVNSDPVL--------AEDSRKLTKID 294
Query: 245 DP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLEVSTMRMATKLFLAFLFLPNR 298
D A Y R GL PR +DLD+NQHVNNV YIGW+LE + + + + L + L R
Sbjct: 295 DKTADYVRSGLTPRWSDLDVNQHVNNVKYIGWILESAPVGIMERQKLKSMTLEYR 349
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 147/236 (62%), Gaps = 8/236 (3%)
Query: 65 PCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFS 124
P + D +G + +DGL + + F +R YE+G ++TA++ET+ N LQE NH +S G
Sbjct: 115 PDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGLL 174
Query: 125 TDGFATTTTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYA 184
+GF T M K +LIWV RM + + +YP W DVV+++TW + G+ G RRDW++ +
Sbjct: 175 GEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNSE 234
Query: 185 TGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYL-VFCPRELRLAFPEENSSSSRKISKL 243
TGE++ RATS WVMMN+ TRRL K+ ++VR E F + LA S+K+ KL
Sbjct: 235 TGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLA------EDSQKLVKL 288
Query: 244 EDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLEVSTMRMATKLFLAFLFLPNR 298
+D A++ GL P+ +DLD+NQHVNNV YIGW+LE + + + L+ L L R
Sbjct: 289 DDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYR 344
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 7/229 (3%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
GL ++ F +R YEVG +++ ++ + N LQE NHA+SVG DGF TT M K LI
Sbjct: 104 GLVFRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLI 163
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200
WV R H+ + +YPAW D VE+E W + G G R D++++D TGE++ R TS VMMN
Sbjct: 164 WVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMN 223
Query: 201 QDTRRLQKVSDDVREEYLVFCPREL-RLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRA 259
TRRL K+ ++VR E P + +A +E +K++ + A Y + GL PR
Sbjct: 224 TRTRRLSKIPEEVRGE---IGPAFIDNVAVKDEEIKKPQKLN--DSTADYIQGGLTPRWN 278
Query: 260 DLDMNQHVNNVTYIGWLLE-VSTMRMATKLFLAFLFLPNRNCYISTTLK 307
DLD+NQHVNN+ Y+ W+LE V + +F R C + + L+
Sbjct: 279 DLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQ 327
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 12/202 (5%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
GL ++ F +R YEVG +++ ++ + N +QE NHA+SVG DGF TT M K L+
Sbjct: 104 GLVFRRTFAIRSYEVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLM 163
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMN 200
WV R H+ + +YP W D VE+E W + G G RRD++++D TGE++ R TS V+MN
Sbjct: 164 WVVRRTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMN 223
Query: 201 QDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKL----EDPAQYSRLGLIP 256
TRRL + D+VR E+ AF + + +I KL + A Y + GL P
Sbjct: 224 TRTRRLSTIPDEVRG--------EIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTP 275
Query: 257 RRADLDMNQHVNNVTYIGWLLE 278
R DLD+NQHVNN+ Y+ W+ E
Sbjct: 276 RWNDLDVNQHVNNLKYVAWVFE 297
>sp|A1QZH7|RPOB_BORT9 DNA-directed RNA polymerase subunit beta OS=Borrelia turicatae
(strain 91E135) GN=rpoB PE=3 SV=1
Length = 1155
Score = 38.5 bits (88), Expect = 0.073, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAILYDGYTGEPFENEVMVGIIYMLKLHHL-VDDKMH 1039
>sp|B5RRJ7|RPOB_BORRA DNA-directed RNA polymerase subunit beta OS=Borrelia recurrentis
(strain A1) GN=rpoB PE=3 SV=1
Length = 1155
Score = 37.7 bits (86), Expect = 0.11, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|B2S092|RPOB_BORHD DNA-directed RNA polymerase subunit beta OS=Borrelia hermsii (strain
DAH) GN=rpoB PE=3 SV=1
Length = 1155
Score = 37.7 bits (86), Expect = 0.11, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGIIYMLKLHHL-VDDKMH 1039
>sp|B5RLU9|RPOB_BORDL DNA-directed RNA polymerase subunit beta OS=Borrelia duttonii (strain
Ly) GN=rpoB PE=3 SV=1
Length = 1155
Score = 37.7 bits (86), Expect = 0.11, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y+V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGEYYDVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 CIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q0SNB8|RPOB_BORAP DNA-directed RNA polymerase subunit beta OS=Borrelia afzelii (strain
PKo) GN=rpoB PE=3 SV=1
Length = 1155
Score = 36.6 bits (83), Expect = 0.26, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q661M9|RPOB_BORGA DNA-directed RNA polymerase subunit beta OS=Borrelia garinii (strain
PBi) GN=rpoB PE=3 SV=1
Length = 1155
Score = 36.2 bits (82), Expect = 0.40, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L++ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKKAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|B7J1W1|RPOB_BORBZ DNA-directed RNA polymerase subunit beta OS=Borrelia burgdorferi
(strain ZS7) GN=rpoB PE=3 SV=1
Length = 1155
Score = 35.4 bits (80), Expect = 0.65, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L+ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKTAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q59191|RPOB_BORBU DNA-directed RNA polymerase subunit beta OS=Borrelia burgdorferi
(strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rpoB
PE=3 SV=2
Length = 1155
Score = 35.4 bits (80), Expect = 0.65, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 45 PVQVQAIVSDQGSPARLESGPCSLADRLRLGTLTEDGLSYKEKFIVRCYEVGINKTATVE 104
PV+ ++D G+P + P + R+ +G L E L K++ Y V + ++AT E
Sbjct: 930 PVEDMPYLAD-GTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLGESYNVPVFESATNE 988
Query: 105 TIANLLQEVGCNHAQSV----GFSTDGFATTTT-----MRKLHLIWVTARMH 147
I L+ G N G++ + F M KLH + V +MH
Sbjct: 989 QIQEKLKTAGFNPTSKEILYDGYTGEPFENEVMVGVIYMLKLHHL-VDDKMH 1039
>sp|Q10856|Y2001_MYCTU Uncharacterized protein Rv2001/MT2057 OS=Mycobacterium tuberculosis
GN=Rv2001 PE=4 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 73/202 (36%), Gaps = 43/202 (21%)
Query: 81 GLSYKEKFIVRCYEVGINKTATVETIANLLQEVGCNHAQSVGFSTDGFATTTTMRKLHLI 140
G Y + + ++ ++ ++ +A +QEVG H + ++H
Sbjct: 18 GYVYTTGWRLATTDIDEHQQLRLDGVARYIQEVGAEHLADAQLA-----------EVHPH 66
Query: 141 WVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWI-LKDYATGEVIGRATSK--WV 197
W+ R I++ + WC + + TR W ++ G GR ++ W+
Sbjct: 67 WIVLRTVIDVINPIELPSDITFHRWCAA---LSTR--WCSMRVQLQGSAGGRIETEGFWI 121
Query: 198 MMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSS-------SSRKISKLEDPAQYS 250
+N+DT +++DD R EN + I E P
Sbjct: 122 CVNKDTLTPSRLTDDCIA----------RFGSTTENHRLKWRPWLTGPNIDGTETPFPL- 170
Query: 251 RLGLIPRRADLDMNQHVNNVTY 272
RR D+D +HVNN Y
Sbjct: 171 ------RRTDIDPFEHVNNTIY 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,572,510
Number of Sequences: 539616
Number of extensions: 5082073
Number of successful extensions: 14807
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14783
Number of HSP's gapped (non-prelim): 20
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)