BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019027
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 14/327 (4%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLVDLQVLNGPS---RLDTIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P +DL+ + R + I+++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 67 ACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP ++ + FF E+ K +D + K + N
Sbjct: 73 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 TEKISNWRDYLRLHCYPLQDY-MHEWPSNPPSFREVVAEYCTSVRGLVLRLLEAISESLG 184
W DY YP + + WP P + E +EY +R L ++ +A+S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 185 LQRDFIDKALGKHGQ---HMALNYYPPCPQPDLTYGLPGHTDPNLITVLLQDDVPGLQVL 241
L+ D ++K +G + M +NYYP CPQP+L G+ HTD + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 252
Query: 242 RNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 300
GKW+ +P++ +++IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 253 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 312
Query: 301 VIAPAKDLIDERHPAVYKNFTYAEYYQ 327
V+ P +++ PA + T+A++ +
Sbjct: 313 VLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 14/327 (4%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLVDLQVLNGPS---RLDTIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P +DL+ + R + I+++ +
Sbjct: 12 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 71
Query: 67 ACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP ++ + FF E+ K +D + K + N
Sbjct: 72 ASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 131
Query: 126 TEKISNWRDYLRLHCYPLQDY-MHEWPSNPPSFREVVAEYCTSVRGLVLRLLEAISESLG 184
W DY YP + + WP P + E +EY +R L ++ +A+S LG
Sbjct: 132 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 191
Query: 185 LQRDFIDKALGKHGQ---HMALNYYPPCPQPDLTYGLPGHTDPNLITVLLQDDVPGLQVL 241
L+ D ++K +G + M +NYYP CPQP+L G+ HTD + +T +L + VPGLQ+
Sbjct: 192 LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF 251
Query: 242 RNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 300
GKW+ +P++ +++IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 252 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 311
Query: 301 VIAPAKDLIDERHPAVYKNFTYAEYYQ 327
V+ P +++ PA + T+A++ +
Sbjct: 312 VLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 16/293 (5%)
Query: 43 SIPLVDLQVLNGPSRLDTIKQIGQACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPES 102
+ P++ L +NG R T + I AC++ GFF++ NHGIP + + + + +K
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 103 ERLKSYSDDPSKSTRLSTSFNVNTEKIS-NWRDYLRLHCYPLQDYMHEWPSNPPSFREVV 161
+R K SK+ V E +W L P+ + + E P +REV
Sbjct: 63 QRFKELV--ASKALE-----GVQAEVTDXDWESTFFLKHLPISN-ISEVPDLDEEYREVX 114
Query: 162 AEYCTSVRGLVLRLLEAISESLGLQRDFIDKAL-GKHGQHMA--LNYYPPCPQPDLTYGL 218
++ + L LL+ + E+LGL++ ++ A G G + ++ YPPCP+PDL GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 219 PGHTDPNLITVLLQDD-VPGLQVLRNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLH 277
HTD I +L QDD V GLQ+L++G+W+ V P ++ +VN+GDQ++V++N +YKSV H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 278 RALVNCDKERISIPTFYCPSPDAVIAPAKDLID---ERHPAVYKNFTYAEYYQ 327
R + D R S+ +FY P DAVI PA L++ E + VY F + +Y +
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 167/327 (51%), Gaps = 14/327 (4%)
Query: 15 STVKSVPSNYIRPISDRPNLTEV----QISDG-SIPLVDLQVLNGPS---RLDTIKQIGQ 66
S + S+P YIRP + ++ +V + DG +P +DL+ + R + I+++ +
Sbjct: 13 SGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKK 72
Query: 67 ACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERLKSYSDDPS-KSTRLSTSFNVN 125
A G + NHGIP + + FF E+ K +D + K + N
Sbjct: 73 ASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANN 132
Query: 126 TEKISNWRDYLRLHCYPLQDY-MHEWPSNPPSFREVVAEYCTSVRGLVLRLLEAISESLG 184
W DY YP + + WP P + E +EY +R L ++ +A+S LG
Sbjct: 133 ASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLG 192
Query: 185 LQRDFIDKALGKHGQ---HMALNYYPPCPQPDLTYGLPGHTDPNLITVLLQDDVPGLQVL 241
L+ D ++K +G + +NYYP CPQP+L G+ HTD + +T +L + VPGLQ+
Sbjct: 193 LEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLF 252
Query: 242 RNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRALVNCDKERISIPTFYCPSPDA- 300
GKW+ +P++ + +IGD +++LSN +YKS+LHR LVN +K RIS F P D
Sbjct: 253 YEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 312
Query: 301 VIAPAKDLIDERHPAVYKNFTYAEYYQ 327
V+ P + + PA + T+A++ +
Sbjct: 313 VLKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 139/284 (48%), Gaps = 20/284 (7%)
Query: 62 KQIGQACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERLKSYSDDPSKSTRLSTS 121
+++G + + GF + ++ + + I+ + A+AFF P E K Y+ R
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP-VETKKQYAG-VKGGARGYIP 81
Query: 122 FNVNTEKISN-------W---RDYLRLHCYPLQDYMHEWPSNPPSFREVVAEYCTSVRGL 171
F V T K ++ W RD H + + WP+ P+F+ V+ S+ G
Sbjct: 82 FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGX 141
Query: 172 VLRLLEAISESLGLQRDFIDKALGKHGQHMALNYYPPCPQPDLTYGLPGHTDPNLITVLL 231
++LEAI+ L L+RDF + + L +YPP P+ H D N IT+LL
Sbjct: 142 GGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 232 QDDVPGLQVL-RNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRALVNCDKERISI 290
+ GL+VL R+G+WLP++P P ++NIGD ++ L+N+ S +HR +VN ER +
Sbjct: 202 GAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 291 PTFYCP-----SPDAVIAPAKDLIDERHPAVY-KNFTYAEYYQK 328
P + P + D I ++ + +P Y ++ T E+ Q+
Sbjct: 261 PRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQ 304
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 59 DTIKQIGQACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERLKSYSDDPSKSTRL 118
D+ K+ ++ + GF + NH I + ++ + T +AFF S +
Sbjct: 13 DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPA 72
Query: 119 STSFNVNTEKISNWRDYLRLHCYPLQDYMHEWPSNPPSFREVVAEYCTSVRGLVLRLLEA 178
S S + + ++Y H YP W P S R + Y L LLE
Sbjct: 73 SISETAKGHTVKDIKEYY--HVYP-------WGRIPDSLRANILAYYEKANTLASELLEW 123
Query: 179 ISE------SLGLQRDFIDKALGKHGQHMALNYYPPCPQPDLTYGL--PGHTDPNLITVL 230
I + H + + +YPP + + H D NLITVL
Sbjct: 124 IETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVL 183
Query: 231 LQDDVPGLQV-LRNGKWLPVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRAL----VNCDK 285
+ PGLQV ++G WL V I+NIGD +Q S+ + S HR + + K
Sbjct: 184 PTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTK 243
Query: 286 ERISIPTFYCPSPDAVIA 303
RIS+P F P P V++
Sbjct: 244 SRISLPLFLHPHPSVVLS 261
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 41/308 (13%)
Query: 39 ISDGSIPLVDLQVLNG---PSRLDTIKQIGQACQHDGFFQVRNHGIPETIINNMLTIARA 95
+S ++P +D+ L G +++ +QI A + GFF NHGI + + +
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKE 60
Query: 96 FFKS--PESE---RLKSYSDDPSKSTRLSTSFNVNTEKISNWRDYL---------RLHCY 141
F S PE + +++Y+ + R ++ +K YL R+
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 142 PLQDYMHEWP--SNPPSFREVVAEYCTSVRGLVLRLLEAISESLGLQRDFIDKALGKHG- 198
++ WP + P F++ +Y V GL LL+ + +LG + +F +
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 199 -QHMALNYYP---PCPQPDLTYGLPG-------HTDPNLITVLLQDDVPGLQVLRNGKWL 247
+ L YP P P+ + G H D +LITVL Q +V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 248 PVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRA-LVNCDKERISIPTFYCPSPDAVIAPAK 306
+ +++N G M L+N+ YK+ +HR VN ER S+P F D+VI P
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP-- 296
Query: 307 DLIDERHP 314
D R P
Sbjct: 297 --FDPREP 302
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 41/308 (13%)
Query: 39 ISDGSIPLVDLQVLNG---PSRLDTIKQIGQACQHDGFFQVRNHGIPETIINNMLTIARA 95
+S ++P +D+ L G +++ +QI A + GFF NHGI + + +
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKE 60
Query: 96 FFKS--PESE---RLKSYSDDPSKSTRLSTSFNVNTEKISNWRDYL---------RLHCY 141
F S PE + +++Y+ + R ++ +K YL R+
Sbjct: 61 FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAK 120
Query: 142 PLQDYMHEWP--SNPPSFREVVAEYCTSVRGLVLRLLEAISESLGLQRDFIDKALGKHG- 198
++ WP + P F++ +Y V GL LL+ + +LG + +F +
Sbjct: 121 TPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDT 180
Query: 199 -QHMALNYYP---PCPQPDLTYGLPG-------HTDPNLITVLLQDDVPGLQVLRNGKWL 247
+ L YP P P+ + G H D +LITVL Q +V LQV +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQ 240
Query: 248 PVSPIPNTFIVNIGDQMQVLSNDRYKSVLHRA-LVNCDKERISIPTFYCPSPDAVIAPAK 306
+ +++N G M L+N+ YK+ +HR VN ER S+P F D+VI P
Sbjct: 241 DIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP-- 296
Query: 307 DLIDERHP 314
D R P
Sbjct: 297 --FDPREP 302
>pdb|1YN4|A Chain A, Crystal Structures Of Eap Domains From Staphylococcus
Aureus Reveal An Unexpected Homology To Bacterial
Superantigens
Length = 99
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 79 HGIPETI-INNMLTIARAFFKSPESERLKSYSDDPSKSTRLSTSFNVNTEKISN 131
H +P TI ++ + + R +F PE++++ D L++ V TEKI+N
Sbjct: 3 HTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINN 56
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 61 IKQIGQACQHDGFFQVRNHGIPETIINNMLTIARAFFKSPESERL--------------K 106
+K+I QA D F ++R + + NMLTI +A K P ++ L K
Sbjct: 224 VKKIRQAT-TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTK 282
Query: 107 SYSDDPSKSTRLSTSFNVNTEK 128
SY D + T + + VN ++
Sbjct: 283 SYLDLKNALTEATVNLLVNIQR 304
>pdb|2ERW|A Chain A, Crystal Structure Of Infestin 4, A Factor Xiia Inhibitor
Length = 56
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 204 NYYPPCPQPDLTYGLPGHTDPNLITVLLQDDVPGLQVLRNGK 245
NY P C TYG +P ++ Q VPGL+++ G+
Sbjct: 11 NYVPVCGSDGKTYG-----NPCMLNCAAQTKVPGLKLVHEGR 47
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 239 QVLRNGKWLPVSPIPN 254
+VL+NG+WL SPIP
Sbjct: 224 EVLKNGEWLXASPIPK 239
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
Length = 651
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 223 DPNLITVLLQDDVPGLQVLRNG----------KWLP----VSPIPNTFIVNIGDQMQVLS 268
DP++ VL++ PGL + +NG KW P P+ + I +I +Q S
Sbjct: 105 DPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQTES 164
Query: 269 NDRYK 273
DR K
Sbjct: 165 KDRRK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,878,935
Number of Sequences: 62578
Number of extensions: 461435
Number of successful extensions: 1107
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 18
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)