Query 019028
Match_columns 347
No_of_seqs 264 out of 835
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.1 1.7E-06 5.7E-11 69.2 3.5 84 3-92 3-100 (101)
2 3ogl_Q JAZ1 incomplete degron 95.5 0.0067 2.3E-07 36.1 2.0 19 279-297 3-21 (21)
3 2jun_A Midline-1; B-BOX, TRIM, 94.1 0.016 5.4E-07 45.7 1.4 43 47-89 4-49 (101)
4 3ogk_Q JAZ1 incomplete degron 93.7 0.019 6.6E-07 34.6 1.0 19 282-300 1-19 (22)
5 2ffw_A Midline-1; B-BOX, ring 91.1 0.065 2.2E-06 41.2 1.2 45 46-90 30-77 (78)
6 2d8u_A Ubiquitin ligase TRIM63 90.4 0.17 5.7E-06 36.7 2.8 50 42-97 4-54 (64)
7 2yvr_A Transcription intermedi 88.2 0.19 6.5E-06 34.7 1.6 46 44-95 4-49 (50)
8 2did_A Tripartite motif protei 85.7 0.49 1.7E-05 33.1 2.7 42 47-95 9-51 (53)
9 2dja_A Midline-2; tripartite m 80.3 0.94 3.2E-05 34.4 2.6 46 46-97 18-64 (84)
10 2ffw_A Midline-1; B-BOX, ring 79.7 0.72 2.5E-05 35.2 1.7 42 3-44 30-74 (78)
11 3ddt_A E3 ubiquitin-protein li 76.7 1.1 3.6E-05 30.7 1.7 40 47-92 7-47 (48)
12 2did_A Tripartite motif protei 75.1 2 7E-05 29.8 2.8 42 3-51 8-50 (53)
13 2yrg_A Tripartite motif-contai 71.9 2.2 7.6E-05 30.6 2.4 42 47-95 15-57 (59)
14 1fre_A Nuclear factor XNF7; zi 71.6 2.7 9.1E-05 27.6 2.6 28 49-77 6-34 (42)
15 2yrg_A Tripartite motif-contai 70.0 2.8 9.5E-05 30.1 2.6 41 4-51 15-56 (59)
16 1fre_A Nuclear factor XNF7; zi 66.0 2.7 9.1E-05 27.7 1.7 31 4-35 4-35 (42)
17 2dja_A Midline-2; tripartite m 61.0 5.6 0.00019 29.9 2.9 46 4-55 19-65 (84)
18 2yvr_A Transcription intermedi 60.7 4.7 0.00016 27.5 2.2 42 3-50 6-47 (50)
19 2d8u_A Ubiquitin ligase TRIM63 60.6 5.2 0.00018 28.5 2.5 46 4-55 9-55 (64)
20 4g92_A HAPB protein; transcrip 57.7 11 0.00038 28.2 3.8 27 299-325 36-63 (64)
21 4hc9_A Trans-acting T-cell-spe 57.1 3.2 0.00011 34.3 0.9 72 2-73 4-87 (115)
22 3ddt_A E3 ubiquitin-protein li 54.9 6.4 0.00022 26.6 2.1 32 5-36 8-40 (48)
23 2d8v_A Zinc finger FYVE domain 52.5 6 0.00021 29.9 1.7 49 44-94 6-55 (67)
24 2csv_A Tripartite motif protei 51.3 4.9 0.00017 29.6 1.1 42 47-95 19-60 (72)
25 2egm_A Tripartite motif-contai 49.1 5.2 0.00018 28.4 0.9 32 3-35 18-50 (57)
26 2csv_A Tripartite motif protei 46.7 8.3 0.00028 28.3 1.7 43 3-52 18-60 (72)
27 2k0a_A PRE-mRNA-splicing facto 43.9 7.5 0.00026 31.8 1.1 51 23-73 22-79 (109)
28 2yqq_A Zinc finger HIT domain- 42.5 12 0.00043 27.1 2.0 27 45-72 11-38 (56)
29 2fc7_A ZZZ3 protein; structure 41.8 41 0.0014 25.8 5.1 51 42-93 18-75 (82)
30 1z60_A TFIIH basal transcripti 40.5 6.9 0.00024 28.7 0.4 31 5-35 17-50 (59)
31 2lri_C Autoimmune regulator; Z 40.0 15 0.00051 27.1 2.2 43 4-54 13-58 (66)
32 1f62_A Transcription factor WS 34.9 22 0.00076 24.2 2.3 45 5-54 2-49 (51)
33 1mm2_A MI2-beta; PHD, zinc fin 30.7 37 0.0013 24.3 3.0 43 4-54 10-55 (61)
34 1zbd_B Rabphilin-3A; G protein 30.2 23 0.00077 29.8 2.0 47 3-54 55-106 (134)
35 1weo_A Cellulose synthase, cat 28.9 19 0.00065 28.7 1.2 33 41-73 11-50 (93)
36 2zet_C Melanophilin; complex, 28.2 24 0.00081 30.3 1.8 45 3-55 68-117 (153)
37 1v6g_A Actin binding LIM prote 23.1 31 0.0011 25.3 1.4 59 15-74 3-71 (81)
38 2yql_A PHD finger protein 21A; 23.0 32 0.0011 24.0 1.4 43 3-53 9-54 (56)
39 3qc1_A Immunoglobulin-binding 21.2 47 0.0016 30.5 2.5 19 279-297 173-191 (243)
40 2jrp_A Putative cytoplasmic pr 20.7 40 0.0014 26.2 1.6 58 2-75 1-60 (81)
41 2ro1_A Transcription intermedi 20.4 66 0.0023 28.1 3.2 44 4-55 3-49 (189)
42 1hji_B NUN-protein; bacterioph 20.2 13 0.00043 22.6 -1.0 14 293-306 10-23 (26)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.09 E-value=1.7e-06 Score=69.21 Aligned_cols=84 Identities=20% Similarity=0.429 Sum_probs=66.0
Q ss_pred CccccccCC---CCceEEeeCCCcccccccccccccccccccccccc-ccc------ccccCC---CceeeccCcccccc
Q 019028 3 SKLCDSCKS---ATATVFCRADSAFLCVNCDTKIHAANKLASRHARV-WVC------EVCEQA---PAHVTCKADAAALC 69 (347)
Q Consensus 3 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv-~LC------e~C~~~---PA~v~C~~d~a~LC 69 (347)
...|+.|.. .+|+.+|..+.+.||..|...+|..+....+|..+ ++- ..|..+ +-.+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 357999984 68999999999999999999999888777888876 221 135544 46889999999999
Q ss_pred ccccC-CCCCCCCcCCCccccccc
Q 019028 70 VTCDR-DIHSANPLARRHERVPVT 92 (347)
Q Consensus 70 ~~CD~-~~Hsan~la~rH~Rvpv~ 92 (347)
..|.. +.|. .|..+||.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99984 6664 46666664
No 2
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=95.50 E-value=0.0067 Score=36.13 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhhcc.....
Q 019028 279 AADREARVLRYREKRKNRK..... 297 (347)
Q Consensus 279 ~~~R~~~~~ry~eKr~~r~..... 297 (347)
+..|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4589999999999999873
No 3
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.05 E-value=0.016 Score=45.75 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=36.9
Q ss_pred cccccccC---CCceeeccCccccccccccCCCCCCCCcCCCcccc
Q 019028 47 WVCEVCEQ---APAHVTCKADAAALCVTCDRDIHSANPLARRHERV 89 (347)
Q Consensus 47 ~LCe~C~~---~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rv 89 (347)
..|++|.. .+|..+|..|...+|..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 46899974 58999999999999999998888877767888877
No 4
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=93.75 E-value=0.019 Score=34.58 Aligned_cols=19 Identities=47% Similarity=0.630 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhccccc
Q 019028 282 REARVLRYREKRKNRKFEK 300 (347)
Q Consensus 282 R~~~~~ry~eKr~~r~f~k 300 (347)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5788999999999987654
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=91.11 E-value=0.065 Score=41.24 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=37.4
Q ss_pred ccccccccC---CCceeeccCccccccccccCCCCCCCCcCCCccccc
Q 019028 46 VWVCEVCEQ---APAHVTCKADAAALCVTCDRDIHSANPLARRHERVP 90 (347)
Q Consensus 46 v~LCe~C~~---~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvp 90 (347)
...|++|.. .+|..+|..|.+++|..|-...|...+...+|+.+.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~~ 77 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIE 77 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcccC
Confidence 467999975 568999999999999999887788777778888764
No 6
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.43 E-value=0.17 Score=36.66 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=37.3
Q ss_pred ccccccccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCcccccccCCCCC
Q 019028 42 RHARVWVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVTPFYDS 97 (347)
Q Consensus 42 RH~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~~~~~~ 97 (347)
+..+..+|..-...+-.+||..|...+|..|. .+.|. .|..+||..++..
T Consensus 4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 34455667666556778999999999999997 55663 5888888877643
No 7
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=88.17 E-value=0.19 Score=34.75 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=33.1
Q ss_pred ccccccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccccCCC
Q 019028 44 ARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFY 95 (347)
Q Consensus 44 ~Rv~LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv~~~~ 95 (347)
.+..+|+.-...+-.+||..|...+|..|..+.| +.|..+||..++
T Consensus 4 ~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea~ 49 (50)
T 2yvr_A 4 ERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDAV 49 (50)
T ss_dssp CCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC--
T ss_pred cCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHHh
Confidence 4455666664556789999999999999976555 368888887653
No 8
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=85.74 E-value=0.49 Score=33.07 Aligned_cols=42 Identities=26% Similarity=0.524 Sum_probs=31.7
Q ss_pred cccccccCCCceeeccCccccccccccC-CCCCCCCcCCCcccccccCCC
Q 019028 47 WVCEVCEQAPAHVTCKADAAALCVTCDR-DIHSANPLARRHERVPVTPFY 95 (347)
Q Consensus 47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD~-~~Hsan~la~rH~Rvpv~~~~ 95 (347)
.+|+.-. .+-.+||..|...+|..|.. +-| +.|..+||..++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~ 51 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS 51 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence 3455554 46788999999999999974 555 468888887765
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=80.33 E-value=0.94 Score=34.36 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=33.7
Q ss_pred ccccccccCCCceeeccCccccccccccC-CCCCCCCcCCCcccccccCCCCC
Q 019028 46 VWVCEVCEQAPAHVTCKADAAALCVTCDR-DIHSANPLARRHERVPVTPFYDS 97 (347)
Q Consensus 46 v~LCe~C~~~PA~v~C~~d~a~LC~~CD~-~~Hsan~la~rH~Rvpv~~~~~~ 97 (347)
..+|+.-+..+-.+||..|...+|..|.. +-| +.|..+||..++..
T Consensus 18 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~~ 64 (84)
T 2dja_A 18 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFEK 64 (84)
T ss_dssp CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCCC
T ss_pred CCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHHH
Confidence 34555544456789999999999999974 655 46888888877643
No 10
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=79.71 E-value=0.72 Score=35.24 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=34.4
Q ss_pred CccccccCC---CCceEEeeCCCcccccccccccccccccccccc
Q 019028 3 SKLCDSCKS---ATATVFCRADSAFLCVNCDTKIHAANKLASRHA 44 (347)
Q Consensus 3 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~ 44 (347)
...|++|.. .+|+-.|....+.||..|=...|.......+|.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~ 74 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR 74 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence 468999975 679999999999999999665687666666775
No 11
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=76.72 E-value=1.1 Score=30.70 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=27.9
Q ss_pred cccccccCCCceeeccCcccccccccc-CCCCCCCCcCCCccccccc
Q 019028 47 WVCEVCEQAPAHVTCKADAAALCVTCD-RDIHSANPLARRHERVPVT 92 (347)
Q Consensus 47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD-~~~Hsan~la~rH~Rvpv~ 92 (347)
.+|+.-...+-.+||..|...+|..|. .+.|. .|..+||.
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence 344443334567999999999999996 55554 46667664
No 12
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=75.06 E-value=2 Score=29.77 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=32.1
Q ss_pred CccccccCCCCceEEeeCCCccccccccc-cccccccccccccccccccc
Q 019028 3 SKLCDSCKSATATVFCRADSAFLCVNCDT-KIHAANKLASRHARVWVCEV 51 (347)
Q Consensus 3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~AN~La~RH~Rv~LCe~ 51 (347)
.+.|..-+ .+-.+||..|...+|..|-. .-|. .|..++|.++
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea 50 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGP 50 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHH
Confidence 45787777 67899999999999999976 5564 3666666554
No 13
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.86 E-value=2.2 Score=30.59 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=31.1
Q ss_pred cccccccCCCceeeccCccccccccccC-CCCCCCCcCCCcccccccCCC
Q 019028 47 WVCEVCEQAPAHVTCKADAAALCVTCDR-DIHSANPLARRHERVPVTPFY 95 (347)
Q Consensus 47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD~-~~Hsan~la~rH~Rvpv~~~~ 95 (347)
.+|.... .+-.+||..|...+|..|.. +-| +.|..+||..++
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea~ 57 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGPS 57 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSSC
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHHh
Confidence 4455544 46788999999999999975 544 468888887654
No 14
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=71.56 E-value=2.7 Score=27.65 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=21.0
Q ss_pred cccccCCCceeeccCccccccccccC-CCC
Q 019028 49 CEVCEQAPAHVTCKADAAALCVTCDR-DIH 77 (347)
Q Consensus 49 Ce~C~~~PA~v~C~~d~a~LC~~CD~-~~H 77 (347)
|+.-+ .+-.+||..|...+|..|.. +-|
T Consensus 6 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 6 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred chhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 44433 45688999999999999975 554
No 15
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.04 E-value=2.8 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=30.7
Q ss_pred ccccccCCCCceEEeeCCCccccccccc-cccccccccccccccccccc
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDT-KIHAANKLASRHARVWVCEV 51 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~AN~La~RH~Rv~LCe~ 51 (347)
++|..-+ .+-.+||..|...+|..|-. .-|.. |..+++.++
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~~------H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHRG------HHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTTT------CCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCCC------CcEeeHHHH
Confidence 5677776 57889999999999999976 55642 666666543
No 16
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=65.98 E-value=2.7 Score=27.65 Aligned_cols=31 Identities=26% Similarity=0.679 Sum_probs=25.0
Q ss_pred ccccccCCCCceEEeeCCCccccccccc-cccc
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDT-KIHA 35 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~ 35 (347)
++|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4677776 57889999999999999976 5554
No 17
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=61.00 E-value=5.6 Score=29.91 Aligned_cols=46 Identities=17% Similarity=0.425 Sum_probs=34.6
Q ss_pred ccccccCCCCceEEeeCCCccccccccc-ccccccccccccccccccccccCC
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDT-KIHAANKLASRHARVWVCEVCEQA 55 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~AN~La~RH~Rv~LCe~C~~~ 55 (347)
..|..-...+-.+||..|...+|..|-. .-|. .|.-+++-++.+..
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~~ 65 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEKL 65 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHHH
Confidence 4677775567899999999999999976 5664 37777777665543
No 18
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=60.70 E-value=4.7 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.550 Sum_probs=31.1
Q ss_pred CccccccCCCCceEEeeCCCcccccccccccccccccccccccccccc
Q 019028 3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCE 50 (347)
Q Consensus 3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe 50 (347)
...|..-...+-.+||..|...+|..|-..-|. .|.-++|-+
T Consensus 6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~e 47 (50)
T 2yvr_A 6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLED 47 (50)
T ss_dssp SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC
T ss_pred CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHH
Confidence 356777755678999999999999999765564 366666543
No 19
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=60.58 E-value=5.2 Score=28.50 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=34.9
Q ss_pred ccccccCCCCceEEeeCCCccccccccc-ccccccccccccccccccccccCC
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDT-KIHAANKLASRHARVWVCEVCEQA 55 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~AN~La~RH~Rv~LCe~C~~~ 55 (347)
..|..-...+-.+||..|...+|..|-. .-|. .|.-++|-++.+..
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~~ 55 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQGQ 55 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSSC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHHH
Confidence 4677775567889999999999999964 4664 37778887766543
No 20
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=57.66 E-value=11 Score=28.19 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.4
Q ss_pred cccccchhhhhhhhhCCC-CCceeecCC
Q 019028 299 EKTIRYASRKAYAEMRPR-IKGRFAKRT 325 (347)
Q Consensus 299 ~k~irY~~Rk~~A~~r~R-~kGrf~k~~ 325 (347)
.|+.-++||-..|-.|+| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466779999999999999 789998765
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=57.09 E-value=3.2 Score=34.29 Aligned_cols=72 Identities=18% Similarity=0.535 Sum_probs=46.3
Q ss_pred CCccccccCCCCceEEeeCCC-cccccccc--ccccccccccccc-cc-------ccccccccCCCceeeccC-cccccc
Q 019028 2 ASKLCDSCKSATATVFCRADS-AFLCVNCD--TKIHAANKLASRH-AR-------VWVCEVCEQAPAHVTCKA-DAAALC 69 (347)
Q Consensus 2 ~~~~Cd~C~~~~A~vyC~aD~-A~LC~~CD--a~vH~AN~La~RH-~R-------v~LCe~C~~~PA~v~C~~-d~a~LC 69 (347)
+++.|..|+.....+|=+.+. -+||..|. .+.|+.|.-.... .| ...|..|.......+=.. +...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 468899999887777777765 48999998 4556655532211 11 345788887666555332 335789
Q ss_pred cccc
Q 019028 70 VTCD 73 (347)
Q Consensus 70 ~~CD 73 (347)
-.|-
T Consensus 84 NaCg 87 (115)
T 4hc9_A 84 NACG 87 (115)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9995
No 22
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=54.90 E-value=6.4 Score=26.64 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=24.0
Q ss_pred cccccCCCCceEEeeCCCcccccccc-cccccc
Q 019028 5 LCDSCKSATATVFCRADSAFLCVNCD-TKIHAA 36 (347)
Q Consensus 5 ~Cd~C~~~~A~vyC~aD~A~LC~~CD-a~vH~A 36 (347)
.|..=...+-.+||..|...+|..|- ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 45554445678999999999999996 445654
No 23
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.48 E-value=6 Score=29.86 Aligned_cols=49 Identities=24% Similarity=0.501 Sum_probs=38.4
Q ss_pred ccccccccccCCCceeeccCc-cccccccccCCCCCCCCcCCCcccccccCC
Q 019028 44 ARVWVCEVCEQAPAHVTCKAD-AAALCVTCDRDIHSANPLARRHERVPVTPF 94 (347)
Q Consensus 44 ~Rv~LCe~C~~~PA~v~C~~d-~a~LC~~CD~~~Hsan~la~rH~Rvpv~~~ 94 (347)
+-.+-|-+|... |++.|..| .-..|+.|-+..|- ..--+.|+.++...-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 446778899865 99999998 55679999999995 344789999987544
No 24
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=51.34 E-value=4.9 Score=29.57 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=30.0
Q ss_pred cccccccCCCceeeccCccccccccccCCCCCCCCcCCCcccccccCCC
Q 019028 47 WVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFY 95 (347)
Q Consensus 47 ~LCe~C~~~PA~v~C~~d~a~LC~~CD~~~Hsan~la~rH~Rvpv~~~~ 95 (347)
.+|+.-+ .+-.+||..|...+|..|..+-| +.|..+||..++
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~ 60 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK 60 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence 3455553 56788999999999999976544 357777766543
No 25
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.14 E-value=5.2 Score=28.41 Aligned_cols=32 Identities=25% Similarity=0.719 Sum_probs=25.3
Q ss_pred CccccccCCCCceEEeeCCCccccccccc-cccc
Q 019028 3 SKLCDSCKSATATVFCRADSAFLCVNCDT-KIHA 35 (347)
Q Consensus 3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa-~vH~ 35 (347)
.++|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 35677775 67899999999999999975 4453
No 26
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=46.75 E-value=8.3 Score=28.31 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=32.5
Q ss_pred CccccccCCCCceEEeeCCCcccccccccccccccccccccccccccccc
Q 019028 3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVC 52 (347)
Q Consensus 3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C 52 (347)
.+.|..-+ .+-.+||..|...+|..|-..-|. .|.-+++-++.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~ 60 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAK 60 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHH
Confidence 35677775 688999999999999999765564 36666666554
No 27
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.94 E-value=7.5 Score=31.82 Aligned_cols=51 Identities=27% Similarity=0.549 Sum_probs=27.1
Q ss_pred cccccccccccccccccccccccccccccccCCCceeeccCcc-------cccccccc
Q 019028 23 AFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADA-------AALCVTCD 73 (347)
Q Consensus 23 A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C~~~PA~v~C~~d~-------a~LC~~CD 73 (347)
..||..||.+--.-+...+-...|.+|+-|....-.-.|.-|. |..|..|-
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4555555544333333333346678888886544333344433 45677774
No 28
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.54 E-value=12 Score=27.10 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=22.5
Q ss_pred cccccccccCCCceeeccCccccccc-cc
Q 019028 45 RVWVCEVCEQAPAHVTCKADAAALCV-TC 72 (347)
Q Consensus 45 Rv~LCe~C~~~PA~v~C~~d~a~LC~-~C 72 (347)
+..+|.+|+. ++.+.|..|.+..|. .|
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESSHHH
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeCHHH
Confidence 3457999999 999999999998875 45
No 29
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=41.77 E-value=41 Score=25.82 Aligned_cols=51 Identities=20% Similarity=0.518 Sum_probs=30.8
Q ss_pred ccccccccccccCCCc---eeeccCccc----cccccccCCCCCCCCcCCCcccccccC
Q 019028 42 RHARVWVCEVCEQAPA---HVTCKADAA----ALCVTCDRDIHSANPLARRHERVPVTP 93 (347)
Q Consensus 42 RH~Rv~LCe~C~~~PA---~v~C~~d~a----~LC~~CD~~~Hsan~la~rH~Rvpv~~ 93 (347)
.|..+ .|+.|+..|- .+.|..|.- -||..|-...+..+.-...|.-++|..
T Consensus 18 ~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 18 QHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR 75 (82)
T ss_dssp EESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred eeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence 34433 7999987663 466888875 599999754332222123565555543
No 30
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.47 E-value=6.9 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.757 Sum_probs=24.1
Q ss_pred cccccCCCCc---eEEeeCCCccccccccccccc
Q 019028 5 LCDSCKSATA---TVFCRADSAFLCVNCDTKIHA 35 (347)
Q Consensus 5 ~Cd~C~~~~A---~vyC~aD~A~LC~~CDa~vH~ 35 (347)
.|-.|...-. ++-|......+|..||.-||.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 4777765432 355999999999999999994
No 31
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.97 E-value=15 Score=27.13 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=27.3
Q ss_pred ccccccCCCCceEEeeCCCcccccccccccccc---cccccccccccccccccC
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAA---NKLASRHARVWVCEVCEQ 54 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~A---N~La~RH~Rv~LCe~C~~ 54 (347)
..|..|+.. +...+|..|++..|.. -.|...-...|.|..|..
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 468888853 4567778888888852 134444445677777753
No 32
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.95 E-value=22 Score=24.23 Aligned_cols=45 Identities=24% Similarity=0.660 Sum_probs=27.0
Q ss_pred cccccCCCCceEEeeCCCcccccccccccccc--c-ccccccccccccccccC
Q 019028 5 LCDSCKSATATVFCRADSAFLCVNCDTKIHAA--N-KLASRHARVWVCEVCEQ 54 (347)
Q Consensus 5 ~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~A--N-~La~RH~Rv~LCe~C~~ 54 (347)
.|..|+... ..+.--+|..|+.-.|.. + .|...-...|.|..|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 478887643 234567788999888852 1 23333344566666643
No 33
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=30.73 E-value=37 Score=24.28 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=24.7
Q ss_pred ccccccCCCCceEEeeCCCcccccccccccccc--c-ccccccccccccccccC
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAA--N-KLASRHARVWVCEVCEQ 54 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~A--N-~La~RH~Rv~LCe~C~~ 54 (347)
..|..|+.. +.-.+|..|+...|.. + .|...-.-.|.|..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 467888753 4567788898888852 1 12222233455555543
No 34
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.22 E-value=23 Score=29.78 Aligned_cols=47 Identities=26% Similarity=0.693 Sum_probs=36.4
Q ss_pred CccccccCCCC-----ceEEeeCCCcccccccccccccccccccccccccccccccC
Q 019028 3 SKLCDSCKSAT-----ATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQ 54 (347)
Q Consensus 3 ~~~Cd~C~~~~-----A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C~~ 54 (347)
...|..|...- ....|....-..|..|...+... +.+..|+|.+|..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~-----~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-----RPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-----SSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCC-----CCccceechhhHH
Confidence 45788887654 45789999999999998877532 4678899999974
No 35
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.94 E-value=19 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=25.5
Q ss_pred cccccccccccccCC-------CceeeccCcccccccccc
Q 019028 41 SRHARVWVCEVCEQA-------PAHVTCKADAAALCVTCD 73 (347)
Q Consensus 41 ~RH~Rv~LCe~C~~~-------PA~v~C~~d~a~LC~~CD 73 (347)
.+|.-.++|.+|+.. ..+|-|..|+-+||..|-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy 50 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCY 50 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHH
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHH
Confidence 345556899999854 246679999999999994
No 36
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.15 E-value=24 Score=30.34 Aligned_cols=45 Identities=24% Similarity=0.686 Sum_probs=34.7
Q ss_pred CccccccCCC-----CceEEeeCCCcccccccccccccccccccccccccccccccCC
Q 019028 3 SKLCDSCKSA-----TATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQA 55 (347)
Q Consensus 3 ~~~Cd~C~~~-----~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C~~~ 55 (347)
.+.|..|... .....|.......|..|... .+....|+|.+|...
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~--------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA--------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC--------CSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc--------cCCCCcEeeHHHHHH
Confidence 4678889875 56788999999999999742 235678999999743
No 37
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.11 E-value=31 Score=25.26 Aligned_cols=59 Identities=20% Similarity=0.432 Sum_probs=33.2
Q ss_pred eEEeeCCC----ccccccccccccccccccc----ccccccccccccCCC--ceeeccCccccccccccC
Q 019028 15 TVFCRADS----AFLCVNCDTKIHAANKLAS----RHARVWVCEVCEQAP--AHVTCKADAAALCVTCDR 74 (347)
Q Consensus 15 ~vyC~aD~----A~LC~~CDa~vH~AN~La~----RH~Rv~LCe~C~~~P--A~v~C~~d~a~LC~~CD~ 74 (347)
.+||+.|= +..|..|+..|. ...|.. -|..-..|..|...- ...+-......+|..|-.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~ 71 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSL 71 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHS
T ss_pred CCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhc
Confidence 46888873 458999999887 333322 244444566666432 122222333346777754
No 38
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.98 E-value=32 Score=24.05 Aligned_cols=43 Identities=21% Similarity=0.743 Sum_probs=24.5
Q ss_pred CccccccCCCCceEEeeCCCcccccccccccccc---ccccccccccccccccc
Q 019028 3 SKLCDSCKSATATVFCRADSAFLCVNCDTKIHAA---NKLASRHARVWVCEVCE 53 (347)
Q Consensus 3 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~A---N~La~RH~Rv~LCe~C~ 53 (347)
...|..|+.. +.-.+|..|+...|.. -+|...-...|.|..|.
T Consensus 9 ~~~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 9 EDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCSCSSSCCS--------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCccCCCC--------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3568888864 3566677888877752 11333333345555553
No 39
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=21.18 E-value=47 Score=30.53 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 019028 279 AADREARVLRYREKRKNRK 297 (347)
Q Consensus 279 ~~~R~~~~~ry~eKr~~r~ 297 (347)
...|+++|.|||++|.-+.
T Consensus 173 a~rR~~KI~rfK~eKeLe~ 191 (243)
T 3qc1_A 173 ASQRQAKIERYKQKKEVEH 191 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3589999999999987654
No 40
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.65 E-value=40 Score=26.22 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCccccccCCCCceEEeeCCCcccccccccccccccccccccccccccccccCCCceeeccCccc--cccccccCC
Q 019028 2 ASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAA--ALCVTCDRD 75 (347)
Q Consensus 2 ~~~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~AN~La~RH~Rv~LCe~C~~~PA~v~C~~d~a--~LC~~CD~~ 75 (347)
|...|-.|...... ...-+-|..|+..+- ...+|.-|++.-.. |.+|.+ .+|..|..-
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~----------~~afCPeCgq~Le~--lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFS----------LQALCPDCRQPLQV--LKACGAVDYFCQNGHGL 60 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEE----------EEEECSSSCSCCCE--EEETTEEEECCTTTTCC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCC----------CcccCcchhhHHHH--HHhcCCcCeeeccCCCE
Confidence 44677777754332 233445777766332 23366666643222 455543 467777543
No 41
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.35 E-value=66 Score=28.06 Aligned_cols=44 Identities=20% Similarity=0.653 Sum_probs=27.6
Q ss_pred ccccccCCCCceEEeeCCCcccccccccccccc--c-ccccccccccccccccCC
Q 019028 4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAA--N-KLASRHARVWVCEVCEQA 55 (347)
Q Consensus 4 ~~Cd~C~~~~A~vyC~aD~A~LC~~CDa~vH~A--N-~La~RH~Rv~LCe~C~~~ 55 (347)
..|..|+.. +.-.+|..|++..|.. + .|...-.-.|.|..|...
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC--------CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 468888854 3567788999888852 1 233333445667777644
No 42
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=20.22 E-value=13 Score=22.60 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=8.8
Q ss_pred hhhccccccccchh
Q 019028 293 RKNRKFEKTIRYAS 306 (347)
Q Consensus 293 r~~r~f~k~irY~~ 306 (347)
|+--.|+|+|-|+-
T Consensus 10 rriarwekriayal 23 (26)
T 1hji_B 10 RRIARWEKRIAYAL 23 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33345778887764
Done!