BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019030
         (347 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
          Length = 267

 Score = 35.8 bits (81), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 211 CGIVAGMVGGLLGLGGGFILGP----LFLELGIPPQV--ASATSTFAMTFSSSMSVVQY 263
            G + G++G L G+GGGF++ P    +F   GIP  V  A  TS F +  +S +S+ ++
Sbjct: 19  VGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRH 77


>sp|P44054|Y806_HAEIN UPF0721 transmembrane protein HI_0806 OS=Haemophilus influenzae
           (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0806
           PE=3 SV=1
          Length = 268

 Score = 35.0 bits (79), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 211 CGIVAGMVGGLLGLGGGFILGPLFLEL--GIPPQVASATS 248
           CGI   MV  + G+GGG ++ P+   L   +P QV SATS
Sbjct: 12  CGICTNMVSAIFGIGGGVLMVPILRTLFPELPIQVISATS 51


>sp|O34430|YTNM_BACSU UPF0721 transmembrane protein YtnM OS=Bacillus subtilis (strain
           168) GN=ytnM PE=3 SV=1
          Length = 300

 Score = 34.3 bits (77), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 52/114 (45%)

Query: 202 IHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVV 261
           + +++ + F G+++ ++ G LG+  G     L L  GI P VASA+   A   +++ S V
Sbjct: 1   MKKLIVFAFIGLLSQLIDGSLGMAYGVTSTSLLLAFGITPAVASASVHLAEVVTTAASGV 60

Query: 262 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIFV 315
            +               +  +  AF G   + ++   + +  I +F+L L  +V
Sbjct: 61  SHIKFGNVDKQTVYQLVIPGSIGAFLGAAFLSQLPGDVAKPYISLFLLLLGGYV 114


>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
           168) GN=yrkJ PE=3 SV=1
          Length = 261

 Score = 33.9 bits (76), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 10/70 (14%)

Query: 192 SKGKEI--TNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLE-LGIPPQVASATS 248
           S+ KE+    W    + F      + G V G+LG GG FIL P+ L  L IP +V  A S
Sbjct: 136 SEDKEVIFNKWLASSLAF------IIGGVSGILGAGGAFILVPIMLSILNIPVRVTVA-S 188

Query: 249 TFAMTFSSSM 258
           + A+TF SS+
Sbjct: 189 SLAITFLSSI 198


>sp|Q9P429|AOX_VENIN Alternative oxidase, mitochondrial OS=Venturia inaequalis GN=AOX1
           PE=3 SV=1
          Length = 361

 Score = 33.1 bits (74), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 33  LFQPMLMLGISI----GVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKK 88
           L++P   + +++    GV FN MF  ++++      F+G   +   + + T+ +E +   
Sbjct: 213 LYEPGWFMRLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEE---EAVVTYTRE-LADL 268

Query: 89  EAAKVLESESKAADVDGQDYKQLPSGPSTVHD 120
           EA K+ E E+ AA     DY  LP G  T+ D
Sbjct: 269 EAGKLPEWETLAAPDIAVDYYNLPEGHRTMKD 300


>sp|Q75AQ8|ALG10_ASHGO Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol
           alpha-1,2-glucosyltransferase OS=Ashbya gossypii (strain
           ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
           GN=ALG10 PE=3 SV=2
          Length = 509

 Score = 31.6 bits (70), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 165 NALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYC 209
           N+L +P AV+ ALF    LY G+  +  K   +  + + Q+ FYC
Sbjct: 248 NSLVLPYAVNFALFLIFLLYNGSVTLGDKSSHVAGFHLVQM-FYC 291


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.141    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,250,084
Number of Sequences: 539616
Number of extensions: 4604156
Number of successful extensions: 16390
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 16373
Number of HSP's gapped (non-prelim): 44
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)