Query 019030
Match_columns 347
No_of_seqs 322 out of 1915
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0730 Predicted permeases [G 99.8 8.4E-19 1.8E-23 163.5 19.8 199 4-314 48-249 (258)
2 PRK10621 hypothetical protein; 99.8 1E-18 2.2E-23 163.8 17.9 196 4-314 52-249 (266)
3 PF01925 TauE: Sulfite exporte 99.8 1.2E-17 2.5E-22 153.6 15.2 177 21-312 56-237 (240)
4 PRK10621 hypothetical protein; 99.6 1.1E-13 2.4E-18 129.8 15.7 109 205-314 12-120 (266)
5 COG0730 Predicted permeases [G 99.5 4E-13 8.6E-18 125.3 15.7 110 205-314 7-116 (258)
6 PF01925 TauE: Sulfite exporte 99.3 2.7E-11 5.8E-16 111.3 12.4 105 209-314 2-106 (240)
7 PF11169 DUF2956: Protein of u 79.8 8.5 0.00018 30.6 6.5 17 127-146 83-99 (103)
8 PF05145 AmoA: Putative ammoni 77.3 71 0.0015 30.8 19.7 79 204-304 156-234 (318)
9 PF12794 MscS_TM: Mechanosensi 72.4 89 0.0019 30.4 13.0 51 28-78 200-252 (340)
10 PF02673 BacA: Bacitracin resi 72.4 85 0.0019 29.4 14.4 94 219-312 157-256 (259)
11 KOG2881 Predicted membrane pro 68.8 28 0.00061 32.6 8.0 62 23-84 98-159 (294)
12 TIGR02840 spore_YtaF putative 65.7 1E+02 0.0022 27.7 16.5 53 26-78 32-84 (206)
13 PF05052 MerE: MerE protein; 63.7 17 0.00037 27.0 4.5 57 14-73 3-70 (75)
14 PF04018 DUF368: Domain of unk 61.0 1.5E+02 0.0032 27.8 20.9 83 206-308 143-225 (257)
15 PF01169 UPF0016: Uncharacteri 59.7 33 0.00072 25.9 5.7 38 273-310 39-76 (78)
16 PRK00281 undecaprenyl pyrophos 59.1 1.6E+02 0.0035 27.7 20.8 90 223-312 165-259 (268)
17 PF02652 Lactate_perm: L-lacta 59.0 1.3E+02 0.0028 31.2 11.7 43 210-252 106-149 (522)
18 PF01988 VIT1: VIT family; In 57.7 1.4E+02 0.0031 26.7 12.5 23 128-150 129-151 (213)
19 PF11044 TMEMspv1-c74-12: Plec 57.7 55 0.0012 22.0 5.6 15 68-82 21-35 (49)
20 COG4280 Predicted membrane pro 56.9 15 0.00033 33.0 3.9 47 30-81 44-90 (236)
21 COG2119 Predicted membrane pro 54.1 35 0.00076 30.3 5.7 50 25-74 35-84 (190)
22 PRK11469 hypothetical protein; 53.9 25 0.00055 31.2 4.9 50 27-77 40-89 (188)
23 PRK10420 L-lactate permease; P 51.9 1.5E+02 0.0031 31.1 10.8 45 209-253 120-165 (551)
24 TIGR00795 lctP L-lactate trans 48.7 2.7E+02 0.0058 29.0 12.1 46 208-253 110-156 (530)
25 PF01169 UPF0016: Uncharacteri 47.1 80 0.0017 23.8 6.0 42 26-67 35-76 (78)
26 TIGR00892 2A0113 monocarboxyla 44.6 56 0.0012 32.6 6.4 12 38-49 382-393 (455)
27 PF11368 DUF3169: Protein of u 44.6 2.5E+02 0.0055 25.7 16.7 25 28-52 9-33 (248)
28 COG3619 Predicted membrane pro 44.4 66 0.0014 29.5 6.2 58 6-63 148-206 (226)
29 PRK09695 glycolate transporter 42.0 2.4E+02 0.0052 29.6 10.6 45 209-253 120-165 (560)
30 PF03741 TerC: Integral membra 41.3 90 0.002 27.6 6.4 58 15-75 22-80 (183)
31 COG2119 Predicted membrane pro 39.8 1.9E+02 0.0042 25.7 8.1 67 5-75 118-184 (190)
32 COG3366 Uncharacterized protei 39.4 3.6E+02 0.0078 26.0 12.3 52 229-280 42-94 (311)
33 PF04066 MrpF_PhaF: Multiple r 39.3 1.3E+02 0.0028 20.9 6.7 52 242-293 3-54 (55)
34 COG5336 Uncharacterized protei 37.9 1.5E+02 0.0033 24.0 6.5 49 27-75 45-95 (116)
35 COG3180 AbrB Putative ammonia 36.3 4.3E+02 0.0093 26.0 11.8 81 205-308 190-271 (352)
36 PF14316 DUF4381: Domain of un 35.8 98 0.0021 26.0 5.6 15 53-67 21-35 (146)
37 COG1971 Predicted membrane pro 35.4 1.2E+02 0.0026 27.1 6.2 47 31-78 44-90 (190)
38 COG3180 AbrB Putative ammonia 35.3 3.4E+02 0.0073 26.7 9.7 75 205-301 11-85 (352)
39 PRK13747 putative mercury resi 34.1 1.2E+02 0.0027 22.7 5.0 37 14-50 3-50 (78)
40 PF09605 Trep_Strep: Hypotheti 32.4 3.5E+02 0.0075 23.8 12.2 32 270-301 154-185 (186)
41 COG2851 CitM H+/citrate sympor 32.3 3.7E+02 0.0081 26.8 9.4 20 209-229 291-310 (433)
42 PTZ00370 STEVOR; Provisional 30.8 98 0.0021 29.4 5.1 46 39-84 242-290 (296)
43 PRK01844 hypothetical protein; 30.7 1.4E+02 0.0031 22.3 4.9 26 276-301 9-34 (72)
44 PF04018 DUF368: Domain of unk 30.6 4.2E+02 0.0091 24.8 9.3 41 267-307 50-90 (257)
45 COG1620 LldP L-lactate permeas 30.4 1.4E+02 0.003 30.9 6.4 42 213-254 111-153 (522)
46 PRK12585 putative monovalent c 30.0 2.3E+02 0.0049 25.4 6.9 21 275-295 71-91 (197)
47 TIGR02185 Trep_Strep conserved 29.2 4E+02 0.0087 23.5 9.4 30 272-301 159-188 (189)
48 COG1968 BacA Undecaprenyl pyro 28.8 5E+02 0.011 24.5 16.8 91 221-311 164-259 (270)
49 TIGR00908 2A0305 ethanolamine 28.5 1.4E+02 0.0031 29.6 6.3 11 14-24 370-380 (442)
50 TIGR02230 ATPase_gene1 F0F1-AT 27.6 2.3E+02 0.0049 22.6 6.0 23 32-54 50-72 (100)
51 KOG3972 Predicted membrane pro 27.3 1.1E+02 0.0024 27.7 4.5 18 206-223 108-125 (252)
52 PF03169 OPT: OPT oligopeptide 26.6 7.7E+02 0.017 25.9 16.3 20 209-228 396-417 (624)
53 PRK02958 tatA twin arginine tr 25.8 1.2E+02 0.0026 22.8 3.8 28 56-83 9-42 (73)
54 PF00558 Vpu: Vpu protein; In 25.6 64 0.0014 24.7 2.4 6 70-75 27-32 (81)
55 PF13829 DUF4191: Domain of un 25.6 3.6E+02 0.0079 24.7 7.7 47 24-74 25-71 (224)
56 PRK00523 hypothetical protein; 24.9 2.1E+02 0.0045 21.4 4.9 25 277-301 11-35 (72)
57 COG0580 GlpF Glycerol uptake f 24.2 2.1E+02 0.0047 26.5 6.1 34 262-295 74-107 (241)
58 COG1968 BacA Undecaprenyl pyro 23.9 6.2E+02 0.013 23.9 11.3 27 28-54 84-110 (270)
59 PRK04598 tatA twin arginine tr 23.1 2.8E+02 0.006 21.2 5.4 27 57-83 10-42 (81)
60 PF07857 DUF1632: CEO family ( 23.0 2.8E+02 0.0061 25.9 6.7 35 156-190 216-250 (254)
61 PRK00191 tatA twin arginine tr 22.9 2.1E+02 0.0046 22.1 4.8 14 71-84 29-42 (84)
62 COG2966 Uncharacterized conser 22.9 5.1E+02 0.011 24.1 8.4 19 205-223 126-144 (250)
63 PRK11387 S-methylmethionine tr 22.1 1.8E+02 0.0039 29.3 5.6 13 63-75 445-457 (471)
64 PF11351 DUF3154: Protein of u 22.0 2.4E+02 0.0052 23.1 5.4 53 23-75 62-118 (123)
65 PF02416 MttA_Hcf106: mttA/Hcf 21.3 2.9E+02 0.0063 19.1 5.1 12 53-64 4-15 (53)
66 KOG4491 Predicted membrane pro 21.1 4.9E+02 0.011 24.3 7.5 27 140-166 20-46 (323)
67 TIGR01478 STEVOR variant surfa 20.8 1.2E+02 0.0027 28.7 3.7 43 39-81 246-291 (295)
68 PRK13453 F0F1 ATP synthase sub 20.7 2E+02 0.0043 24.9 5.0 44 39-82 9-52 (173)
69 COG2814 AraJ Arabinose efflux 20.5 4.3E+02 0.0093 26.4 7.8 26 275-300 254-279 (394)
70 PF11833 DUF3353: Protein of u 20.5 3.9E+02 0.0084 23.9 6.8 62 2-69 120-190 (194)
71 PRK10726 hypothetical protein; 20.3 2.2E+02 0.0049 22.7 4.5 34 37-70 61-94 (105)
72 PF00230 MIP: Major intrinsic 20.2 5.9E+02 0.013 22.6 8.2 36 263-298 81-116 (227)
No 1
>COG0730 Predicted permeases [General function prediction only]
Probab=99.82 E-value=8.4e-19 Score=163.54 Aligned_cols=199 Identities=22% Similarity=0.318 Sum_probs=161.4
Q ss_pred chhHHHHHHHh-hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019030 4 GAAGSTVYYNL-RLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 4 g~sla~~i~~~-~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
|+++....++. .....|++|..+||+.+..+.+..++|+.+|+.+...+|+..+...+.+++.+.+.+++++.++ .++
T Consensus 48 ~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~-~~~ 126 (258)
T COG0730 48 GTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL-AKA 126 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc-ccc
Confidence 45555555553 4555566777799999999999999999999999999999999999999999999999876221 000
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCccchhccchhHHHHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 019030 83 ETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYW 162 (347)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw 162 (347)
|. .+ ++ ..||.
T Consensus 127 ~~------------------~~---------------~~------~~~~~------------------------------ 137 (258)
T COG0730 127 ED------------------RA---------------AR------LRPLL------------------------------ 137 (258)
T ss_pred cc------------------cc---------------cc------cCcch------------------------------
Confidence 00 00 00 11111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhcccccccCccccchhhhHHHHHHHHHHHHHHHHhhccccchhhHHHHHH-hcCCCh
Q 019030 163 ILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPP 241 (347)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~ 241 (347)
.......|+++|+++|++|+|||...+|.+. ..+.|.
T Consensus 138 ------------------------------------------~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~ 175 (258)
T COG0730 138 ------------------------------------------FALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPL 175 (258)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCch
Confidence 0122467889999999999999999999996 568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019030 242 QVASATSTFAMTFSSSMSVVQYYL-LDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~-~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+.+++||.+..++++..+...|.. .|++||.....+.+++++|+++|++++++++++.+|..+..+++...+.
T Consensus 176 ~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~ 249 (258)
T COG0730 176 KLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIK 249 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 6999999988999999999999999999999999999998777766654
No 2
>PRK10621 hypothetical protein; Provisional
Probab=99.81 E-value=1e-18 Score=163.81 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=154.7
Q ss_pred chhHHHHHHHh-hhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019030 4 GAAGSTVYYNL-RLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 4 g~sla~~i~~~-~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
++++...+.+. .....|+++..+||+.++.+.+..++|+.+|+.+...+|+..+..++.+++.+.+.+++.|- ++
T Consensus 52 ~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~ 127 (266)
T PRK10621 52 ATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KL 127 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----cc
Confidence 45555544444 22223345567999999999999999999999999999999999999999998888776540 00
Q ss_pred HHHHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCccchhccchhHHHHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 019030 83 ETMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYW 162 (347)
Q Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw 162 (347)
++ ++ .+ + +.+ .
T Consensus 128 ~~---~~----------------------~~-------~------~~~-~------------------------------ 138 (266)
T PRK10621 128 GE---ED----------------------RQ-------R------RLY-G------------------------------ 138 (266)
T ss_pred cc---cc----------------------cc-------c------ccc-c------------------------------
Confidence 00 00 00 0 000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhcccccccCccccchhhhHHHHHHHHHHHHHHHHhhccccchhhHHHHHH-hcCCCh
Q 019030 163 ILNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLGLGGGFILGPLFL-ELGIPP 241 (347)
Q Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~ 241 (347)
.......|+++|+++|++|+|||.+.+|.++ .++.|+
T Consensus 139 ------------------------------------------~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~ 176 (266)
T PRK10621 139 ------------------------------------------LPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNL 176 (266)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCH
Confidence 0012346889999999999999999998774 679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019030 242 QVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
++|++|+.+..+++++.+...|...|++||..++.+.+++++|+++|+++.++++++.+|+.+..+++...+.
T Consensus 177 ~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~ 249 (266)
T PRK10621 177 AKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAK 249 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887765543
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.76 E-value=1.2e-17 Score=153.58 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=146.1
Q ss_pred CCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 019030 21 LDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKETMMKKEAAKVLESESKA 100 (347)
Q Consensus 21 ~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~~ 100 (347)
+++..+||+.+..+.+..++|+.+|+.+...+|+..+..++.+++.+.+.+++.|.++ ++.+
T Consensus 56 ~~~~~i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~---~~~~--------------- 117 (240)
T PF01925_consen 56 RKHGNIDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRR---KTPK--------------- 117 (240)
T ss_pred HHccccchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccc---cccc---------------
Confidence 3446799999999999999999999999999999999999999999999988765110 0000
Q ss_pred cccccccccCCCCCCCCCCCCccchhccchhHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHhhHHHHHHHHHHHH
Q 019030 101 ADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWILNALQVPIAVSVALFEA 180 (347)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw~~~~~~~~~~i~~~~~~~ 180 (347)
. +++ +.-+
T Consensus 118 ------------~------~~~----~~~~-------------------------------------------------- 125 (240)
T PF01925_consen 118 ------------S------RSS----PPKR-------------------------------------------------- 125 (240)
T ss_pred ------------c------ccc----ccch--------------------------------------------------
Confidence 0 000 0000
Q ss_pred HHHHhhcccccccCccccchhhhHHHHHHHHHHH-HHHHHhhccccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHH
Q 019030 181 ICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIV-AGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSM 258 (347)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~G~~sgl~GiGGG~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~ 258 (347)
......|++ +|+++|++|+|||.+.+|.+. ..+.|++++.+|+.++.++++..
T Consensus 126 -------------------------~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~ 180 (240)
T PF01925_consen 126 -------------------------WLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVA 180 (240)
T ss_pred -------------------------hhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111234445 999999999999999999997 47999999999999999999999
Q ss_pred HHHHHHHhCCccHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019030 259 SVVQYYLLDRFPVPYAAF---FTLVATFAAFAGQHVVRKIIAVLGRASIIVFILALT 312 (347)
Q Consensus 259 ~~~~~~~~g~v~~~~~l~---l~~~~~iGa~~Ga~l~~~l~~~~l~~~~~v~ll~~~ 312 (347)
+...|...|.+||+.... +.+++++|+++|.++.++++++..|+.+.++++...
T Consensus 181 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~ 237 (240)
T PF01925_consen 181 ALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSG 237 (240)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999997776 999999999999999999999999999888777654
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=129.76 Aligned_cols=109 Identities=17% Similarity=0.334 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 019030 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 284 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iG 284 (347)
.......|+++|+++|+.| |||.+.+|+|..+|+||++|++|+.+.++.+++++...|.+++++||+....+.+++++|
T Consensus 12 ~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~~g~~~~~Av~tsl~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~l~G 90 (266)
T PRK10621 12 LGVLFFVAMLAGFIDSIAG-GGGLLTIPALLAAGMSPAQALATNKLQACGGSFSASLYFIRRKVVNLADQKLNIAMTFVG 90 (266)
T ss_pred HHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3556678999999999999 999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019030 285 AFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 285 a~~Ga~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+++|++++..+|++.++..+.++++...+.
T Consensus 91 a~~G~~l~~~l~~~~l~~~~~~~ll~~~~~ 120 (266)
T PRK10621 91 SMSGALLVQYVQADILRQILPILVIGIGLY 120 (266)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877765544
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.51 E-value=4e-13 Score=125.31 Aligned_cols=110 Identities=30% Similarity=0.478 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 019030 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 284 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iG 284 (347)
.......|+++|+++|++|+|||.+.+|.|..+++||+.|.+|+.....+++..++..|+++|++||+.+..+.+++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019030 285 AFAGQHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 285 a~~Ga~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+.+|+.+...+|++.++..+.++++....+
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~ 116 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLLLLLALY 116 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888877665
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.30 E-value=2.7e-11 Score=111.28 Aligned_cols=105 Identities=25% Similarity=0.422 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Q 019030 209 CFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAG 288 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iGa~~G 288 (347)
.++++++|++.|..|.|+|.+.+|+|..+ +||++|++|+.....+++..++..|.+++++||+...++.+++++|+.+|
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~~-l~~~~a~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~iG 80 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILILF-LPPKQAVATSLFINLFTSLIAALRHRKHGNIDWKIVLPLIIGALIGVVIG 80 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhHhHHHHHHH
Confidence 46789999999999999999999999765 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019030 289 QHVVRKIIAVLGRASIIVFILALTIF 314 (347)
Q Consensus 289 a~l~~~l~~~~l~~~~~v~ll~~~~~ 314 (347)
+++...+|++.++..+.++++.....
T Consensus 81 ~~l~~~l~~~~l~~~~~~~ll~~~~~ 106 (240)
T PF01925_consen 81 AWLLSLLPDDILKLIFGLFLLLLAIY 106 (240)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888776655
No 7
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=79.84 E-value=8.5 Score=30.63 Aligned_cols=17 Identities=41% Similarity=1.056 Sum_probs=12.2
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 019030 127 KNIYWKELSLLLYVWLGFLA 146 (347)
Q Consensus 127 ~~~~~~~~~~l~~~~~~~~~ 146 (347)
...||. +|++.|+||.+
T Consensus 83 ~~LPW~---LL~lSW~gF~~ 99 (103)
T PF11169_consen 83 SWLPWG---LLVLSWIGFIA 99 (103)
T ss_pred cchhHH---HHHHHHHHHHH
Confidence 366776 78888988843
No 8
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=77.31 E-value=71 Score=30.76 Aligned_cols=79 Identities=15% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Q 019030 204 QIVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATF 283 (347)
Q Consensus 204 ~~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~i 283 (347)
.......++...|.+.-.+++=.+.++.|++.. +........+.+++..+....-.++
T Consensus 156 ~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~----------------------a~~~~~~~~~~~~P~~l~~~aqv~i 213 (318)
T PF05145_consen 156 WLALLALAALAGGLLARRLRIPAPWLLGPMLVS----------------------AILNLFGGPSFSLPPWLVNAAQVLI 213 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH----------------------HHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 344445556666666666666666555555531 1111111224556666666666777
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 019030 284 AAFAGQHVVRKIIAVLGRASI 304 (347)
Q Consensus 284 Ga~~Ga~l~~~l~~~~l~~~~ 304 (347)
|..+|.++.....++..|...
T Consensus 214 G~~iG~~f~~~~l~~~~~~~~ 234 (318)
T PF05145_consen 214 GASIGSRFTRETLRELRRLLP 234 (318)
T ss_pred HHHHHccccHHHHHHHHHHHH
Confidence 888888876655554444433
No 9
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=72.42 E-value=89 Score=30.38 Aligned_cols=51 Identities=8% Similarity=0.159 Sum_probs=35.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019030 28 YDLALLFQPMLMLGISIGVAF--NVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~l--n~~~P~~ll~~l~~vlL~~~~~~~~~k~~~ 78 (347)
+..+++..|..+++..+=.+. +..+-+.++..++.++.....+.+.+++..
T Consensus 200 ~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~l~~~~~l~~~l~~Rwl~ 252 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYYTALQLLERLILSLYLLLGWLLVYQLILRWLL 252 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778777776554444 445566667777777888888888887653
No 10
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=72.39 E-value=85 Score=29.36 Aligned_cols=94 Identities=11% Similarity=-0.075 Sum_probs=63.2
Q ss_pred HhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh-C-----CccHHHHHHHHHHHHHHHHHHHHHH
Q 019030 219 GGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLL-D-----RFPVPYAAFFTLVATFAAFAGQHVV 292 (347)
Q Consensus 219 sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~-g-----~v~~~~~l~l~~~~~iGa~~Ga~l~ 292 (347)
+-+-|+.=.-..+-..+..|++.++|.=-|-++.++..+.+...-..+ . ..++.....-.+.+++.+++.-+..
T Consensus 157 Al~PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~l 236 (259)
T PF02673_consen 157 ALIPGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWL 236 (259)
T ss_pred ccCCCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677776677777778899999999999999988877777644332 1 1344445555566666777777666
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 019030 293 RKIIAVLGRASIIVFILALT 312 (347)
Q Consensus 293 ~~l~~~~l~~~~~v~ll~~~ 312 (347)
.++-++..-..|..+.+.+.
T Consensus 237 l~~~~~~~~~~F~~Y~~~lg 256 (259)
T PF02673_consen 237 LRFLKRRKLRPFAIYRIILG 256 (259)
T ss_pred HHHHhhCCceeehhHHhhHH
Confidence 66666555555666655443
No 11
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=68.80 E-value=28 Score=32.62 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019030 23 MPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKET 84 (347)
Q Consensus 23 ~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~e~ 84 (347)
|-++=-.-..-+.-|+++++.+|=.--.++|..+-..+-.+++.+.++|+++-|++..+.|.
T Consensus 98 R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~ 159 (294)
T KOG2881|consen 98 RLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEG 159 (294)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 34555555666778899999999888889999999999999999999999999877765443
No 12
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=65.73 E-value=1e+02 Score=27.69 Aligned_cols=53 Identities=8% Similarity=0.213 Sum_probs=41.3
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019030 26 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 26 Id~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~ 78 (347)
...-+..+-.-++.+|..+|-.+..++|+++-..+=.++|.+.+.++++++.+
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667888999999999999998766677778888899999987653
No 13
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=63.70 E-value=17 Score=27.04 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=34.1
Q ss_pred hhhcCCCC-CCCccchhH---HHHHhhH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHH
Q 019030 14 LRLRHPTL-DMPLIDYDL---ALLFQPM-------LMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKAL 73 (347)
Q Consensus 14 ~~~~hp~~-~~plId~~l---~l~l~P~-------~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~ 73 (347)
.-+|-|+. ++|.=-|-. +.+..|+ ++.||-.|+++... |.+..+....|.+.+....
T Consensus 3 ~p~~~p~e~~k~i~gy~Wg~lA~lTCPCHLpil~~vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~~~ 70 (75)
T PF05052_consen 3 SPERLPPETRKPITGYLWGLLALLTCPCHLPILAPVLAGTAAGAFLGEH---WVIAALTLTGLFVLSLTRA 70 (75)
T ss_pred CcccCChhhcCcchhhhhHHHHHhhCcchHHHHHHHHccchHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 33555654 455555543 3344343 78899999998875 7666665555555554433
No 14
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=61.00 E-value=1.5e+02 Score=27.85 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Q 019030 206 VFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAA 285 (347)
Q Consensus 206 ~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iGa 285 (347)
+.+...|++++..-=+=|+.|..++ +.+|.=.....+-+.+.. -|+....++++|.++|-
T Consensus 143 ~~lf~~G~ia~~AMIlPGiSGS~iL----lilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~~Gi 202 (257)
T PF04018_consen 143 LYLFLAGAIAACAMILPGISGSFIL----LILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVVIGI 202 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH----HHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHHHHH
Confidence 4456677766666566677777653 334442222222222211 47788899999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 019030 286 FAGQHVVRKIIAVLGRASIIVFI 308 (347)
Q Consensus 286 ~~Ga~l~~~l~~~~l~~~~~v~l 308 (347)
..-+|+.+++-+++.+..+..++
T Consensus 203 ~~~skll~~ll~~~~~~t~~~i~ 225 (257)
T PF04018_consen 203 LLFSKLLSYLLKRYRSQTYAFII 225 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777665443
No 15
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=59.68 E-value=33 Score=25.90 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019030 273 YAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVFILA 310 (347)
Q Consensus 273 ~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~~~~~v~ll~ 310 (347)
..+.+.....++..+|.++.+++|+++.+..-+++.+.
T Consensus 39 ~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 39 ATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 34556777889999999999999999999876655443
No 16
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=59.08 E-value=1.6e+02 Score=27.71 Aligned_cols=90 Identities=17% Similarity=0.018 Sum_probs=49.0
Q ss_pred cccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-C----ccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019030 223 GLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLD-R----FPVPYAAFFTLVATFAAFAGQHVVRKIIA 297 (347)
Q Consensus 223 GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g-~----v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~ 297 (347)
|+.=.-..+-..+..|++.++|.=-|-++.++.-+.+...-..+. + .++...+.-.+.+++.+++.-+...++-+
T Consensus 165 GiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~~ 244 (268)
T PRK00281 165 GTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYIK 244 (268)
T ss_pred CCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444567999999999999988888776665332211 1 33322233344455555555555555444
Q ss_pred HHHHHHHHHHHHHHH
Q 019030 298 VLGRASIIVFILALT 312 (347)
Q Consensus 298 ~~l~~~~~v~ll~~~ 312 (347)
+.--..|+.+.+.+.
T Consensus 245 ~~~~~~F~~Yri~lG 259 (268)
T PRK00281 245 RHSFTPFAIYRIILG 259 (268)
T ss_pred hCCceehHHHHHHHH
Confidence 443334555544443
No 17
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=58.97 E-value=1.3e+02 Score=31.19 Aligned_cols=43 Identities=28% Similarity=0.446 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccccchh-hHHHHHHhcCCChHHHHHHHHHHH
Q 019030 210 FCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAM 252 (347)
Q Consensus 210 ~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~ 252 (347)
+.-.+.+++=|..|.|-.. +..|+|..+|+||.+|+..++...
T Consensus 106 i~~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n 149 (522)
T PF02652_consen 106 IAFGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGN 149 (522)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHc
Confidence 3344567899999988885 677888899999999999988753
No 18
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=57.70 E-value=1.4e+02 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh
Q 019030 128 NIYWKELSLLLYVWLGFLAVQLA 150 (347)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~~ 150 (347)
.-||+..+..++.+...-.+-++
T Consensus 129 ~~p~~~al~~~~sf~lg~liPll 151 (213)
T PF01988_consen 129 ESPWKAALATFLSFILGGLIPLL 151 (213)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 46888877777665555444443
No 19
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=57.68 E-value=55 Score=22.03 Aligned_cols=15 Identities=13% Similarity=-0.161 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 019030 68 TSTKALFKGIDTWKK 82 (347)
Q Consensus 68 ~~~~~~~k~~~~~~~ 82 (347)
.+.-.+.|-++.+.|
T Consensus 21 iGl~IyQkikqIrgK 35 (49)
T PF11044_consen 21 IGLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445555554444433
No 20
>COG4280 Predicted membrane protein [Function unknown]
Probab=56.89 E-value=15 Score=32.96 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019030 30 LALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWK 81 (347)
Q Consensus 30 l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~ 81 (347)
+++.+.|...+|.. -.++|--.+++.-.++|++.++|..||+.+.++
T Consensus 44 lalvl~l~lvlGk~-----L~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 44 LALVLILTLVLGKL-----LYLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred HHHHHHHHHHHccc-----eeeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566655553 257788899999999999999999999877666
No 21
>COG2119 Predicted membrane protein [Function unknown]
Probab=54.11 E-value=35 Score=30.31 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=39.3
Q ss_pred ccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 019030 25 LIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 74 (347)
Q Consensus 25 lId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~ 74 (347)
.|--.++.=+.-+..+...+|-.....+|+..+.....+..+..+.+++.
T Consensus 35 ~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ 84 (190)
T COG2119 35 PVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLI 84 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhc
Confidence 35566677777788888888888888888888888888888878877764
No 22
>PRK11469 hypothetical protein; Provisional
Probab=53.90 E-value=25 Score=31.20 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=38.3
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 019030 27 DYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGI 77 (347)
Q Consensus 27 d~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~ 77 (347)
+.-+...-.-+.++|...|..+..++|++- ..+=..+|.+.+.++++++.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444556667788899999999999999976 55555577888999988754
No 23
>PRK10420 L-lactate permease; Provisional
Probab=51.88 E-value=1.5e+02 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhccccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019030 209 CFCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
.+.-.+.+|+=|..|-|-.. +..|+|+.+|++|-.|+..++....
T Consensus 120 lI~~~Fg~FlEg~AGFGtpvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (551)
T PRK10420 120 IVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNT 165 (551)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 34445678999999988764 5566777899999999998877654
No 24
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=48.74 E-value=2.7e+02 Score=28.98 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhccccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019030 208 YCFCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 208 ~~~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
+.+.-.+.+|+=|..|.|-.. +..|+|..+|++|-.|+..++....
T Consensus 110 llI~~~Fg~flEg~aGFGtpvAI~aplLv~LGf~Pl~Aa~i~Li~ns 156 (530)
T TIGR00795 110 LLIGFCFGAFLEGAAGFGTPVAITAAILVGLGFKPLYAAGLCLIANT 156 (530)
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 334445678999999988864 5567778899999999998877554
No 25
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=47.06 E-value=80 Score=23.79 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=33.9
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019030 26 IDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIG 67 (347)
Q Consensus 26 Id~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~ 67 (347)
+=....+=+..++.++..+|..+...+|+..+..+-.+++..
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 455666777888999999999999999999988777766554
No 26
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=44.64 E-value=56 Score=32.63 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 019030 38 LMLGISIGVAFN 49 (347)
Q Consensus 38 ~l~G~~iGv~ln 49 (347)
..+|..++..+.
T Consensus 382 ~~igp~i~G~l~ 393 (455)
T TIGR00892 382 VLIGPPLAGRLV 393 (455)
T ss_pred HHccccceeeee
Confidence 344444444443
No 27
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=44.61 E-value=2.5e+02 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=17.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHh
Q 019030 28 YDLALLFQPMLMLGISIGVAFNVMF 52 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~ln~~~ 52 (347)
++....+.-+.++|.++|......-
T Consensus 9 ~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 9 LRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777778888887665444
No 28
>COG3619 Predicted membrane protein [Function unknown]
Probab=44.41 E-value=66 Score=29.52 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=42.2
Q ss_pred hHHHHHHHhhh-cCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 019030 6 AGSTVYYNLRL-RHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLII 63 (347)
Q Consensus 6 sla~~i~~~~~-~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~v 63 (347)
.+.++-.++-+ -.+.++..+.||-.-..+.+....|++.|+++...+-++.+......
T Consensus 148 nl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~ 206 (226)
T COG3619 148 NLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAAL 206 (226)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444444422 22223578899999999999999999999999999998876554443
No 29
>PRK09695 glycolate transporter; Provisional
Probab=42.02 E-value=2.4e+02 Score=29.57 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhccccchh-hHHHHHHhcCCChHHHHHHHHHHHH
Q 019030 209 CFCGIVAGMVGGLLGLGGGF-ILGPLFLELGIPPQVASATSTFAMT 253 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~-i~vP~L~~~g~~~~~A~ats~~~~~ 253 (347)
.+.-.+.+|+=|..|-|-.. +..|+|..+|++|-.|+..++....
T Consensus 120 lI~~~Fg~FlEg~aGFGtPvAI~aplLv~LGF~Pl~Aa~i~Li~ns 165 (560)
T PRK09695 120 LIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLCLIANT 165 (560)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 34445678999999988865 5566777899999999988876554
No 30
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=41.26 E-value=90 Score=27.55 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=38.1
Q ss_pred hhcCCCC-CCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 019030 15 RLRHPTL-DMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 15 ~~~hp~~-~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k 75 (347)
.++-|.+ ++..+.|.+..-+.-= ++=...|+.+-..+ +.+..+.+++|.++++|.++.
T Consensus 22 ~~~lp~~~r~kal~~Gi~~A~~lR-~~~i~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~ 80 (183)
T PF03741_consen 22 FRKLPPEQRRKALFWGIIGAIVLR-IIFIFLASWLLSIF--PWILLIGGLFLLYIAIKLLHE 80 (183)
T ss_pred HhCCCHHHhhhhHHHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3556665 5667888876543222 22233444554444 669999999999999999865
No 31
>COG2119 Predicted membrane protein [Function unknown]
Probab=39.79 E-value=1.9e+02 Score=25.70 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=50.8
Q ss_pred hhHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHH
Q 019030 5 AAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 5 ~sla~~i~~~~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k 75 (347)
+++|++....+..+| ..+=....+=+.++..++...|-+++..+|...+..+=.+++.+.+...+..
T Consensus 118 TQiATIaLaA~~~~~----~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 118 TQIATIALAADYHSP----WAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred HHHHHHHHhhcCCCc----eeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333 4566777888999999999999999999999999998888888887666543
No 32
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.39 E-value=3.6e+02 Score=26.02 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=25.3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHhCCccHHHHHHHHHH
Q 019030 229 ILGPLFLELGIPPQVASATSTFAMTFSSSMSVV-QYYLLDRFPVPYAAFFTLV 280 (347)
Q Consensus 229 i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~-~~~~~g~v~~~~~l~l~~~ 280 (347)
+.-|.+...++|+..+++......-+++..+.. .|+++|.+|-+.++.....
T Consensus 42 ~~~~i~~~~~l~~~c~sa~~~~f~sptag~smL~~~~keg~l~eREvi~~sll 94 (311)
T COG3366 42 LTKPILRYLNLPEECGSAFATFFVSPTAGNSMLSEFYKEGKLNEREVIVASLL 94 (311)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhChhhhHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 344555555666655555444433333333332 4555556655554444433
No 33
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=39.32 E-value=1.3e+02 Score=20.90 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 019030 242 QVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFAAFAGQHVVR 293 (347)
Q Consensus 242 ~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~ 293 (347)
...+|...+......+..............+.++.++..+++|+..-++..+
T Consensus 3 DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~ 54 (55)
T PF04066_consen 3 DRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLE 54 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456667777777777777777776677778888888888888887776543
No 34
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.89 E-value=1.5e+02 Score=24.00 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=33.9
Q ss_pred chhHHHHHhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhhHHHHHH
Q 019030 27 DYDLALLFQPMLMLGISIGVAFNVMFA--DWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 27 d~~l~l~l~P~~l~G~~iGv~ln~~~P--~~ll~~l~~vlL~~~~~~~~~k 75 (347)
-|.+..=+.-.+++|+.+|-++-.++- +|-+.+++.+=++.-.....+|
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888889999999999988774 5766655555454444444444
No 35
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=36.30 E-value=4.3e+02 Score=25.99 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Q 019030 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLD-RFPVPYAAFFTLVATF 283 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g-~v~~~~~l~l~~~~~i 283 (347)
......++++.|.++-....=.+.++.|+++. +..|...+ +.+.+..+....-.++
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~-----------------------a~v~~~~~~~~~lP~wl~~va~~~i 246 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLG-----------------------AIVHFGGGITIQLPAWLLAVAQALI 246 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------------------HHhhcccceeeeCCHHHHHHHHHHH
Confidence 34445566666666666666566665555531 11222111 4566777777778889
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019030 284 AAFAGQHVVRKIIAVLGRASIIVFI 308 (347)
Q Consensus 284 Ga~~Ga~l~~~l~~~~l~~~~~v~l 308 (347)
|..+|.++.+..-....|..+..++
T Consensus 247 G~~IG~~f~~~~l~~~~r~~~~~~v 271 (352)
T COG3180 247 GALIGSRFDRSILREAKRLLPAILV 271 (352)
T ss_pred HHHHcccccHHHHHHhHhhcchHHH
Confidence 9999999988776666665544433
No 36
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.82 E-value=98 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 019030 53 ADWMVTVLLIILFIG 67 (347)
Q Consensus 53 P~~ll~~l~~vlL~~ 67 (347)
|+|.+.++++++++.
T Consensus 21 ~GWwll~~lll~~~~ 35 (146)
T PF14316_consen 21 PGWWLLLALLLLLLI 35 (146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566665555444443
No 37
>COG1971 Predicted membrane protein [Function unknown]
Probab=35.37 E-value=1.2e+02 Score=27.05 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 019030 31 ALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGID 78 (347)
Q Consensus 31 ~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~ 78 (347)
.....-+.++|..+|-+++.+..+|-=.+-+ ++|...+.++++.+.+
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf-~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGF-VLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 3445566788888888888666565443444 4566677778776543
No 38
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=35.33 E-value=3.4e+02 Score=26.70 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH
Q 019030 205 IVFYCFCGIVAGMVGGLLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVVQYYLLDRFPVPYAAFFTLVATFA 284 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~~~~~~g~v~~~~~l~l~~~~~iG 284 (347)
.......++..|.+..+.|+..+.++.+.+. .... .-....++.++..+....-.++|
T Consensus 11 w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~---------------a~~v-------~~~~~~~l~~P~~l~~~~q~ilG 68 (352)
T COG3180 11 WFILLLLSLLGGWLLTLLHVPAAWMLGAPLL---------------AGIV-------AGLRGLTLPLPRGLFKAGQVILG 68 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHH-------HHhccccccCChHHHHHHHHHHH
Confidence 3445566667777777777766666652221 1111 11222345555555555566666
Q ss_pred HHHHHHHHHHhHHHHHH
Q 019030 285 AFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 285 a~~Ga~l~~~l~~~~l~ 301 (347)
..+|+.+....-+...+
T Consensus 69 ~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 69 IMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHhhhcCHHHHHHHHH
Confidence 66676666555444444
No 39
>PRK13747 putative mercury resistance protein; Provisional
Probab=34.06 E-value=1.2e+02 Score=22.72 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=21.0
Q ss_pred hhhcCCCC-CCCccch---hHHHHHhhH-------HHHHHHHHHHHHH
Q 019030 14 LRLRHPTL-DMPLIDY---DLALLFQPM-------LMLGISIGVAFNV 50 (347)
Q Consensus 14 ~~~~hp~~-~~plId~---~l~l~l~P~-------~l~G~~iGv~ln~ 50 (347)
.-+|.|.. ++|.--| .++++..|+ ++.||-.|+++..
T Consensus 3 ~~e~~p~e~~~~~~~YlWg~lAvLTCPCHLpiLa~lLAGTa~Gafl~e 50 (78)
T PRK13747 3 SPERLPSETHKPITGYLWGALAVLTCPCHLPILAAVLAGTTAGAFLGE 50 (78)
T ss_pred CcccCChhhcCcchhhhhHHHHHhcCcchHHHHHHHHccchHHHHHHH
Confidence 34566654 4554444 345555554 5577777777765
No 40
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=32.45 E-value=3.5e+02 Score=23.78 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019030 270 PVPYAAFFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 270 ~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~ 301 (347)
+.+....+.+.+++++.+|+.+.+++-+|..+
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44666677778888888888888887776653
No 41
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=32.26 E-value=3.7e+02 Score=26.83 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhccccchhh
Q 019030 209 CFCGIVAGMVGGLLGLGGGFI 229 (347)
Q Consensus 209 ~~~g~~~G~~sgl~GiGGG~i 229 (347)
...=+.+|.+.|.+. |.|++
T Consensus 291 vs~i~AAGif~Gil~-gtgMv 310 (433)
T COG2851 291 VSLIFAAGIFLGILS-GTGMV 310 (433)
T ss_pred HHHHHHHHHHhhhhC-CCchH
Confidence 334455666666666 55644
No 42
>PTZ00370 STEVOR; Provisional
Probab=30.81 E-value=98 Score=29.42 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 019030 39 MLGISIGVAFNVMFAD---WMVTVLLIILFIGTSTKALFKGIDTWKKET 84 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~---~ll~~l~~vlL~~~~~~~~~k~~~~~~~e~ 84 (347)
++|+..|...+.+.|= .++++++++.|+..=...++|-++.||-|.
T Consensus 242 lagtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~ 290 (296)
T PTZ00370 242 LAGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHEC 290 (296)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4566666666666663 334455555555444445566667776664
No 43
>PRK01844 hypothetical protein; Provisional
Probab=30.70 E-value=1.4e+02 Score=22.27 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019030 276 FFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 276 ~l~~~~~iGa~~Ga~l~~~l~~~~l~ 301 (347)
...++.++|...|-.++++.-+++++
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777776666655
No 44
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=30.60 E-value=4.2e+02 Score=24.78 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=30.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019030 267 DRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLGRASIIVF 307 (347)
Q Consensus 267 g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~~~~~v~ 307 (347)
.++|++..+++.+|..+|-...+++.+.+-+++-......|
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF 90 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFF 90 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 47888989999999999998888888877665554444333
No 45
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=30.38 E-value=1.4e+02 Score=30.88 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=33.1
Q ss_pred HHHHHHHhhccccc-hhhHHHHHHhcCCChHHHHHHHHHHHHH
Q 019030 213 IVAGMVGGLLGLGG-GFILGPLFLELGIPPQVASATSTFAMTF 254 (347)
Q Consensus 213 ~~~G~~sgl~GiGG-G~i~vP~L~~~g~~~~~A~ats~~~~~~ 254 (347)
.+..++=|-.|-|. ..+..|+|..+|++|-.|.+-++.+...
T Consensus 111 ~FgaflEGAaGFGtP~AI~ApLLVgLGF~PL~AA~l~LIaNta 153 (522)
T COG1620 111 CFGAFLEGAAGFGTPAAIAAPLLVGLGFNPLKAAGLCLIANTA 153 (522)
T ss_pred HHHHHHhhhcccCChHHHHHHHHHHcCCChHHHHHHHHHhcCC
Confidence 34567888888887 5678888899999999999887765543
No 46
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.02 E-value=2.3e+02 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 019030 275 AFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 275 l~l~~~~~iGa~~Ga~l~~~l 295 (347)
+...+.-++.+++++++..+.
T Consensus 71 LLiIvFllLTaPVaSHaIARA 91 (197)
T PRK12585 71 LLAVLFIFLTTPVASHLINRA 91 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888888776554
No 47
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=29.23 E-value=4e+02 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019030 272 PYAAFFTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 272 ~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l~ 301 (347)
.....+.+.+++++.+|+.+.+++-+|..+
T Consensus 159 ~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 159 IWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444556667778888888888777666543
No 48
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=28.80 E-value=5e+02 Score=24.51 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=51.6
Q ss_pred hccccchhhHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHhC----CccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 221 LLGLGGGFILGPLFLELGIPPQVASATSTFAMTFSSSMSVV-QYYLLD----RFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 221 l~GiGGG~i~vP~L~~~g~~~~~A~ats~~~~~~~s~~~~~-~~~~~g----~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
+=|+.-.--.+-..+++|++.++|.=-|-+...++.+.+.. .....+ ..|+.....-.+.+++-+++.-+...++
T Consensus 164 ~PG~SRSGaTI~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~ 243 (270)
T COG1968 164 IPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRF 243 (270)
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555433344444567999999999998888888776554 333332 2344445555555666666665554444
Q ss_pred HHHHHHHHHHHHHHHH
Q 019030 296 IAVLGRASIIVFILAL 311 (347)
Q Consensus 296 ~~~~l~~~~~v~ll~~ 311 (347)
-++.--..|+.+-+.+
T Consensus 244 i~~~~~~~F~~Yrivl 259 (270)
T COG1968 244 IKRHSFIPFAIYRIVL 259 (270)
T ss_pred HHhCCCeehHHHHHHH
Confidence 4433333444444433
No 49
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=28.55 E-value=1.4e+02 Score=29.58 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=8.4
Q ss_pred hhhcCCCCCCC
Q 019030 14 LRLRHPTLDMP 24 (347)
Q Consensus 14 ~~~~hp~~~~p 24 (347)
+|++||+.+||
T Consensus 370 lr~~~p~~~rp 380 (442)
T TIGR00908 370 LRIRRPDMERP 380 (442)
T ss_pred HHhcCCCCCCC
Confidence 47888887776
No 50
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.58 E-value=2.3e+02 Score=22.61 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhH
Q 019030 32 LLFQPMLMLGISIGVAFNVMFAD 54 (347)
Q Consensus 32 l~l~P~~l~G~~iGv~ln~~~P~ 54 (347)
.-+.-.+++|..+|.+|-..+|.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t 72 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPS 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Confidence 33455678888888888888875
No 51
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=27.25 E-value=1.1e+02 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 019030 206 VFYCFCGIVAGMVGGLLG 223 (347)
Q Consensus 206 ~~~~~~g~~~G~~sgl~G 223 (347)
......|+.-|++||++-
T Consensus 108 ~lAyVsGLgfGIiSgvFs 125 (252)
T KOG3972|consen 108 MLAYVSGLGFGIISGVFS 125 (252)
T ss_pred HHHHHhccchhHHHHHHH
Confidence 334556666688887764
No 52
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=26.58 E-value=7.7e+02 Score=25.91 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhccc--cchh
Q 019030 209 CFCGIVAGMVGGLLGL--GGGF 228 (347)
Q Consensus 209 ~~~g~~~G~~sgl~Gi--GGG~ 228 (347)
.+..+..|.+.|..|. ..|+
T Consensus 396 ~v~~~~~~~~~g~t~~~P~~~~ 417 (624)
T PF03169_consen 396 FVFSIPSGRITGETGINPVSGL 417 (624)
T ss_pred HHHHHHHHHHhhhcCCCcchhh
Confidence 3445555666666666 4444
No 53
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.75 E-value=1.2e+02 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhHHH------HHHHHHHHHHH
Q 019030 56 MVTVLLIILFIGTSTKA------LFKGIDTWKKE 83 (347)
Q Consensus 56 ll~~l~~vlL~~~~~~~------~~k~~~~~~~e 83 (347)
++.++++++|+|-+-|. +-|+.+..|++
T Consensus 9 lliIl~IvlllFG~kKLPelgr~lGkair~FK~~ 42 (73)
T PRK02958 9 WLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDG 42 (73)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Confidence 34445555555554333 44555555544
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.61 E-value=64 Score=24.69 Aligned_cols=6 Identities=17% Similarity=-0.219 Sum_probs=0.0
Q ss_pred HHHHHH
Q 019030 70 TKALFK 75 (347)
Q Consensus 70 ~~~~~k 75 (347)
++-++|
T Consensus 27 ~ieYrk 32 (81)
T PF00558_consen 27 YIEYRK 32 (81)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333444
No 55
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.57 E-value=3.6e+02 Score=24.71 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=27.9
Q ss_pred CccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHH
Q 019030 24 PLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALF 74 (347)
Q Consensus 24 plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~ 74 (347)
|.+-|=+...+.-.+.++.++|.+++ .|...+++.+++.+.+....+
T Consensus 25 p~l~~~ml~a~l~~~~v~v~ig~l~~----~~~~~~i~gi~~g~l~am~vl 71 (224)
T PF13829_consen 25 PKLPWLMLGAFLGPIAVFVLIGLLFG----SWWYWLIIGILLGLLAAMIVL 71 (224)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHc----cHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444555555555555 777777777777766655544
No 56
>PRK00523 hypothetical protein; Provisional
Probab=24.89 E-value=2.1e+02 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 019030 277 FTLVATFAAFAGQHVVRKIIAVLGR 301 (347)
Q Consensus 277 l~~~~~iGa~~Ga~l~~~l~~~~l~ 301 (347)
..++.++|...|-.++++.-+++++
T Consensus 11 ~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666777776666665
No 57
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=24.21 E-value=2.1e+02 Score=26.48 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 262 QYYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 262 ~~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
..+..|+++|+.+++..+.-++|+.+|+.++..+
T Consensus 74 ~la~~g~fp~~~v~~YivAQ~lGA~~ga~l~~~~ 107 (241)
T COG0580 74 ALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLL 107 (241)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999877653
No 58
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=23.88 E-value=6.2e+02 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=15.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHhhH
Q 019030 28 YDLALLFQPMLMLGISIGVAFNVMFAD 54 (347)
Q Consensus 28 ~~l~l~l~P~~l~G~~iGv~ln~~~P~ 54 (347)
|++.+...-.++.-.++|..+..+.-+
T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~ 110 (270)
T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKS 110 (270)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHH
Confidence 666665555555555566666554444
No 59
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=23.08 E-value=2.8e+02 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 019030 57 VTVLLIILFIGTSTK------ALFKGIDTWKKE 83 (347)
Q Consensus 57 l~~l~~vlL~~~~~~------~~~k~~~~~~~e 83 (347)
+.++++++|+|-+-| .+-|+.+.+|++
T Consensus 10 liIlvivlllFG~kKLPelg~~lGk~i~~FKk~ 42 (81)
T PRK04598 10 LIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKA 42 (81)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHh
Confidence 444445555555433 244555555544
No 60
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=23.00 E-value=2.8e+02 Score=25.89 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=18.9
Q ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHhhcccc
Q 019030 156 PCSITYWILNALQVPIAVSVALFEAICLYKGTRVI 190 (347)
Q Consensus 156 ~cs~~yw~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 190 (347)
+|....+++....=.++....+|.++.++++.|++
T Consensus 216 s~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~ 250 (254)
T PF07857_consen 216 SQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPK 250 (254)
T ss_pred CCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCC
Confidence 45566566655443333444455666666665544
No 61
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=22.89 E-value=2.1e+02 Score=22.05 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 019030 71 KALFKGIDTWKKET 84 (347)
Q Consensus 71 ~~~~k~~~~~~~e~ 84 (347)
+.+-|+.+..|++.
T Consensus 29 r~lGk~ir~FK~~~ 42 (84)
T PRK00191 29 RSIGRSMRIFKSEV 42 (84)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666665543
No 62
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=5.1e+02 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 019030 205 IVFYCFCGIVAGMVGGLLG 223 (347)
Q Consensus 205 ~~~~~~~g~~~G~~sgl~G 223 (347)
+......|+..|.++-++|
T Consensus 126 ~l~~~~~g~~~~~f~~l~g 144 (250)
T COG2966 126 WLVLLMAGLAAAAFALLFG 144 (250)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3556778899999999999
No 63
>PRK11387 S-methylmethionine transporter; Provisional
Probab=22.05 E-value=1.8e+02 Score=29.30 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHH
Q 019030 63 ILFIGTSTKALFK 75 (347)
Q Consensus 63 vlL~~~~~~~~~k 75 (347)
+...+..|+..+|
T Consensus 445 ~~~~~~~~~~~~~ 457 (471)
T PRK11387 445 VALCYGAYYLTQR 457 (471)
T ss_pred HHHHHHHHHHhcc
Confidence 3445555655544
No 64
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.98 E-value=2.4e+02 Score=23.11 Aligned_cols=53 Identities=13% Similarity=-0.036 Sum_probs=36.6
Q ss_pred CCccchhHHHHHhhH---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhHHHHHH
Q 019030 23 MPLIDYDLALLFQPM---LMLGISIGVAFNVM-FADWMVTVLLIILFIGTSTKALFK 75 (347)
Q Consensus 23 ~plId~~l~l~l~P~---~l~G~~iGv~ln~~-~P~~ll~~l~~vlL~~~~~~~~~k 75 (347)
||.+=|-.+..+.-. -+++......-... +|+.+-.++-..++.|.+.|++-|
T Consensus 62 RP~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~vpe~lw~Llg~~vlgy~~~Rs~eK 118 (123)
T PF11351_consen 62 RPALGWVCLLLFAWAFMLDPLWFWARMQAQALQVPEPLWWLLGAGVLGYFGARSQEK 118 (123)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCHHHHHHHHHHHhhhHHHhhHHH
Confidence 899999876555433 44444444444555 899877777688888888888765
No 65
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=21.34 E-value=2.9e+02 Score=19.11 Aligned_cols=12 Identities=8% Similarity=0.528 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 019030 53 ADWMVTVLLIIL 64 (347)
Q Consensus 53 P~~ll~~l~~vl 64 (347)
|++++..+.+++
T Consensus 4 ~El~iI~vvall 15 (53)
T PF02416_consen 4 PELLIILVVALL 15 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
No 66
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=21.10 E-value=4.9e+02 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHH
Q 019030 140 VWLGFLAVQLAKEYVVPCSITYWILNA 166 (347)
Q Consensus 140 ~~~~~~~~~~~~~~~~~cs~~yw~~~~ 166 (347)
-|++....+-.-+...+-.++.|++..
T Consensus 20 ~w~~~~~~s~~~~~~r~ipp~RwlFsv 46 (323)
T KOG4491|consen 20 FWIISMTASTYYGNLRPIPPWRWLFSV 46 (323)
T ss_pred HHHHHHHHHHHhccCccCCcHHHHHHH
Confidence 388777777766666677889999873
No 67
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.77 E-value=1.2e+02 Score=28.75 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 019030 39 MLGISIGVAFNVMFAD---WMVTVLLIILFIGTSTKALFKGIDTWK 81 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~---~ll~~l~~vlL~~~~~~~~~k~~~~~~ 81 (347)
++|+..|...+.+.|= .++++++++.|+..=...++|-++.||
T Consensus 246 lagtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 246 DAERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred ccchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4556666666666663 233444444444333334444444444
No 68
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.66 E-value=2e+02 Score=24.91 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019030 39 MLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKK 82 (347)
Q Consensus 39 l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~ 82 (347)
++|+-.|.-...++-..+-.+++.++|....|+-+.+.++.|+.
T Consensus 9 ~~~~~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~ 52 (173)
T PRK13453 9 VLGAAGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRER 52 (173)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555543444444444555555556666666666665553
No 69
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=20.52 E-value=4.3e+02 Score=26.38 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019030 275 AFFTLVATFAAFAGQHVVRKIIAVLG 300 (347)
Q Consensus 275 l~l~~~~~iGa~~Ga~l~~~l~~~~l 300 (347)
+.+++++++|..+|.+++++-+.+.+
T Consensus 254 l~~Gv~~~~Gn~~gGrl~dr~~~~~l 279 (394)
T COG2814 254 LAFGIAGFIGNLLGGRLADRGPRRAL 279 (394)
T ss_pred HHHHHHHHHHHHHHhhhccccchhHH
Confidence 44566777777777777777433333
No 70
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.51 E-value=3.9e+02 Score=23.86 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHhh
Q 019030 2 IMGAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFAD---------WMVTVLLIILFIGTS 69 (347)
Q Consensus 2 I~g~sla~~i~~~~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~---------~ll~~l~~vlL~~~~ 69 (347)
+...+++..++.+.+| ..=-++-+++-.-...+|.++|..+..++|. -.+..++..++++.+
T Consensus 120 ~Lal~~~~~iyfl~~K------~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 120 QLALGLGACIYFLNRK------ERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred HHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
No 71
>PRK10726 hypothetical protein; Provisional
Probab=20.31 E-value=2.2e+02 Score=22.73 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhH
Q 019030 37 MLMLGISIGVAFNVMFADWMVTVLLIILFIGTST 70 (347)
Q Consensus 37 ~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~ 70 (347)
.+.+..++|+.++.++++.++..+++..+...+.
T Consensus 61 LmPvsVlvGi~l~~Ll~g~l~~s~l~t~l~V~~l 94 (105)
T PRK10726 61 LMPVSVLVGIALHSLLRGKLLYSILFTLLTVGCL 94 (105)
T ss_pred HhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 3456678999999999999998888877776653
No 72
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=20.22 E-value=5.9e+02 Score=22.62 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAV 298 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~ 298 (347)
....|+++|...+...++-++|+.+|+.+.+.+-++
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~ 116 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPD 116 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTH
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccC
Confidence 345689999999999999999999999988765443
Done!