Query 019030
Match_columns 347
No_of_seqs 322 out of 1915
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 24.1 1.6E+02 0.0056 27.9 7.3 11 14-24 392-402 (511)
2 3c02_A Aquaglyceroporin; membr 17.0 2.2E+02 0.0076 25.1 6.0 33 263-295 77-109 (258)
3 2o9g_A Aquaporin Z; integral m 16.9 2E+02 0.0069 24.9 5.6 33 263-295 73-105 (234)
4 3gd8_A Aquaporin-4; proton exc 16.4 2.1E+02 0.0073 24.6 5.6 32 264-295 74-105 (223)
5 2w2e_A AQY1, aquaporin, aquapo 15.9 2.1E+02 0.0073 25.6 5.6 32 264-295 120-151 (279)
6 3llq_A Aquaporin Z 2; aquapori 15.9 2E+02 0.0068 25.5 5.4 32 264-295 99-130 (256)
7 1j4n_A Aquaporin 1; membrane p 15.9 2.2E+02 0.0074 25.4 5.6 33 263-295 85-117 (271)
8 3d9s_A Aquaporin-5, AQP-5; aqu 15.7 2.2E+02 0.0075 25.3 5.6 33 263-295 77-109 (266)
9 1ldf_A Glycerol uptake facilit 15.3 2.5E+02 0.0085 25.1 5.9 33 263-295 75-107 (281)
10 2f2b_A Aquaporin AQPM; protein 15.2 2.1E+02 0.0073 25.0 5.4 33 263-295 89-121 (246)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.08 E-value=1.6e+02 Score=27.93 Aligned_cols=11 Identities=45% Similarity=0.764 Sum_probs=7.3
Q ss_pred hhhcCCCCCCC
Q 019030 14 LRLRHPTLDMP 24 (347)
Q Consensus 14 ~~~~hp~~~~p 24 (347)
.|+|+|+.+||
T Consensus 392 ~r~~~~~~~~~ 402 (511)
T 4djk_A 392 LVLKHPDLKRT 402 (511)
T ss_dssp HHHHCCSCCCS
T ss_pred HHHhCCCCCCC
Confidence 36777776665
No 2
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=16.98 E-value=2.2e+02 Score=25.09 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=28.3
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|..+....+.-++|+.+|+.++..+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 109 (258)
T 3c02_A 77 LSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL 109 (258)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999887765
No 3
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=16.89 E-value=2e+02 Score=24.94 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=26.7
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|+.+....+.-++|+.+|+.++..+
T Consensus 73 ~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 73 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999998877643
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=16.42 E-value=2.1e+02 Score=24.60 Aligned_cols=32 Identities=9% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
...|+++|..+....+.-++|+.+|+.++..+
T Consensus 74 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 74 VCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34588999999999999999999999887643
No 5
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=15.95 E-value=2.1e+02 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=24.4
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
...|+++|..+....+.-++|+.+|+.++..+
T Consensus 120 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 120 VLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888776643
No 6
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=15.89 E-value=2e+02 Score=25.52 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.7
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 264 ~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
...|+++|..+....++-++|+.+|+.++..+
T Consensus 99 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 130 (256)
T 3llq_A 99 TVAGRFPASSLVPYVIAQVAGAIVAAAALYVI 130 (256)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588889888888899999999988877643
No 7
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=15.86 E-value=2.2e+02 Score=25.43 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|..+....+.-++|+.+|+.++..+
T Consensus 85 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999887654
No 8
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=15.68 E-value=2.2e+02 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|..+....+.-++|+.+|+.++..+
T Consensus 77 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 77 LLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688999999999999999999999887754
No 9
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=15.26 E-value=2.5e+02 Score=25.12 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|..+....+.-++|+.+|+.++..+
T Consensus 75 ~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 107 (281)
T 1ldf_A 75 LWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 107 (281)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999887654
No 10
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=15.17 E-value=2.1e+02 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
....|+++|+.+....+.-++|+.+|+.++..+
T Consensus 89 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 121 (246)
T 2f2b_A 89 LWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQC 121 (246)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999998887654
Done!