Query 019030
Match_columns 347
No_of_seqs 322 out of 1915
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 09:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 24.4 53 0.0038 26.5 5.6 33 263-295 70-102 (234)
2 d1cola_ f.1.1.1 (A:) Colicin A 20.8 27 0.002 27.9 2.8 22 278-299 174-195 (197)
3 d1fx8a_ f.19.1.1 (A:) Glycerol 17.7 1.1E+02 0.0081 24.6 6.4 33 263-295 70-102 (254)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 15.4 2.8E+02 0.02 22.5 10.0 16 229-244 46-61 (447)
5 d1rc2a_ f.19.1.1 (A:) Aquapori 14.4 86 0.0063 24.8 4.7 33 264-296 71-103 (231)
6 d1j4na_ f.19.1.1 (A:) Aquapori 14.0 1.2E+02 0.0089 24.3 5.6 34 263-296 85-118 (249)
7 d1q90r_ f.23.12.1 (R:) ISP sub 9.9 85 0.0062 18.1 2.1 25 199-223 6-30 (39)
8 d1q90g_ f.23.26.1 (G:) PetG su 7.1 1.9E+02 0.014 15.3 3.2 20 29-48 8-27 (30)
9 d2yvxa3 f.57.1.1 (A:276-448) M 7.0 2.6E+02 0.019 21.1 4.8 46 212-264 119-165 (173)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 5.5 6.6E+02 0.048 19.8 17.5 295 4-335 131-444 (447)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.36 E-value=53 Score=26.50 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=28.8
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
++..|+++|+..+...+.-++|+.+|+.++..+
T Consensus 70 ~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 70 FLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCChhheeeeeehHHHHHHHHHHHHHHH
Confidence 455789999999999999999999999888754
No 2
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=20.83 E-value=27 Score=27.91 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 019030 278 TLVATFAAFAGQHVVRKIIAVL 299 (347)
Q Consensus 278 ~~~~~iGa~~Ga~l~~~l~~~~ 299 (347)
.+.+++|+++....+..+++..
T Consensus 174 li~~~v~alIdd~~~~~iN~~l 195 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNEI 195 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4556667777776666666544
No 3
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=17.73 E-value=1.1e+02 Score=24.64 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.4
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKI 295 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l 295 (347)
.+..|+++|.......+.-++|+.+|+.+...+
T Consensus 70 ~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 70 LWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999987654
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.37 E-value=2.8e+02 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=10.3
Q ss_pred hHHHHHHhcCCChHHH
Q 019030 229 ILGPLFLELGIPPQVA 244 (347)
Q Consensus 229 i~vP~L~~~g~~~~~A 244 (347)
+..|.+...|++..+.
T Consensus 46 ~~~p~~~~~g~s~~~~ 61 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDL 61 (447)
T ss_dssp HHHHHTTSSTTCSSCH
T ss_pred HHHHHHHHhCcCHHHH
Confidence 4567766677776554
No 5
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=14.39 E-value=86 Score=24.84 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019030 264 YLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 296 (347)
Q Consensus 264 ~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~ 296 (347)
+..|+++|+......+.-++|+.+|+.+.+.+.
T Consensus 71 ~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 71 WAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999999999887654
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.03 E-value=1.2e+02 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=28.9
Q ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019030 263 YYLLDRFPVPYAAFFTLVATFAAFAGQHVVRKII 296 (347)
Q Consensus 263 ~~~~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~ 296 (347)
.+..|++++...+...+.-++|+.+|+.+.+.+-
T Consensus 85 ~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 4456899999999999999999999998877653
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.87 E-value=85 Score=18.11 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=15.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhcc
Q 019030 199 NWKIHQIVFYCFCGIVAGMVGGLLG 223 (347)
Q Consensus 199 ~~~~~~~~~~~~~g~~~G~~sgl~G 223 (347)
+...+++.-+...|.+.+-..|+.+
T Consensus 6 DMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 6 DMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccchhhhhhcc
Confidence 3445565656667777776666544
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.11 E-value=1.9e+02 Score=15.26 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=13.6
Q ss_pred hHHHHHhhHHHHHHHHHHHH
Q 019030 29 DLALLFQPMLMLGISIGVAF 48 (347)
Q Consensus 29 ~l~l~l~P~~l~G~~iGv~l 48 (347)
.+++-+.|.++.|-++-+++
T Consensus 8 GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 8 GIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHH
Confidence 45666777777777666655
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.05 E-value=2.6e+02 Score=21.14 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=27.6
Q ss_pred HHHHHHHHhhccccchhhHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 019030 212 GIVAGMVGGLLGLGGGFILGPLFL-ELGIPPQVASATSTFAMTFSSSMSVVQYY 264 (347)
Q Consensus 212 g~~~G~~sgl~GiGGG~i~vP~L~-~~g~~~~~A~ats~~~~~~~s~~~~~~~~ 264 (347)
-+..-.+++++| ..+|+++ .+|.||..+.+ -+....+-..+...|+
T Consensus 119 l~~~~~ia~~~G-----~~lPlll~klg~DPA~aS~--P~itti~Di~g~~iyf 165 (173)
T d2yvxa3 119 LVLIVFFANLVG-----AMLPFLLRRLGVDPALVSN--PLVATLSDVTGLLIYL 165 (173)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHTSCCGGGSCS--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhCCChhhhhh--hHHHHHHHHHHHHHHH
Confidence 334445566666 4688886 68999977643 3444445555555554
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.47 E-value=6.6e+02 Score=19.84 Aligned_cols=295 Identities=9% Similarity=-0.081 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhhcCCCCCCCccchhHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019030 4 GAAGSTVYYNLRLRHPTLDMPLIDYDLALLFQPMLMLGISIGVAFNVMFADWMVTVLLIILFIGTSTKALFKGIDTWKKE 83 (347)
Q Consensus 4 g~sla~~i~~~~~~hp~~~~plId~~l~l~l~P~~l~G~~iGv~ln~~~P~~ll~~l~~vlL~~~~~~~~~k~~~~~~~e 83 (347)
|...........+..|.++|+...=-......-...+|..++..+.....+|-........+.....-....-.+..+++
T Consensus 131 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
T d1pw4a_ 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS 210 (447)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhh
Q ss_pred HHHHHHHHHhhhhhccccccccccccCCCCCCCCCCCCccchhccchhHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHH
Q 019030 84 TMMKKEAAKVLESESKAADVDGQDYKQLPSGPSTVHDEEVPIIKNIYWKELSLLLYVWLGFLAVQLAKEYVVPCSITYWI 163 (347)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~cs~~yw~ 163 (347)
. .....++.+.......+++.++....++..+++ .......|.
T Consensus 211 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 253 (447)
T d1pw4a_ 211 C----------------GLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY---------------------VLPNKLLWY 253 (447)
T ss_dssp T----------------CCCSCTTTCCC-------------CCTHHHHHH---------------------TSSCHHHHH
T ss_pred c----------------ccchhhhhhhhcccchhhccccccchhhHHHHH---------------------HHcCchHHH
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhcccccccCccccchhhhHHHHHHHHHHHHHHHHhhcc--------ccchhhHHHHHH
Q 019030 164 LNALQVPIAVSVALFEAICLYKGTRVIASKGKEITNWKIHQIVFYCFCGIVAGMVGGLLG--------LGGGFILGPLFL 235 (347)
Q Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~G--------iGGG~i~vP~L~ 235 (347)
.....+-.......+..+....-.+.......+......-......+..++.|.++.-.+ +-...+....+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T d1pw4a_ 254 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 333 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHH
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHH----------hCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Q 019030 236 ELGIPPQVASATSTFAMTFSSSMSVVQYYL----------LDRFPVPYAAFFTLVATFAAFAGQHVVRKIIAVLG-RASI 304 (347)
Q Consensus 236 ~~g~~~~~A~ats~~~~~~~s~~~~~~~~~----------~g~v~~~~~l~l~~~~~iGa~~Ga~l~~~l~~~~l-~~~~ 304 (347)
.....+...........+.........+.. ........++.-..+.+.|+..|..+...+.+... +..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~ 413 (447)
T d1pw4a_ 334 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 413 (447)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhHhhhccC
Q 019030 305 IVFILALTIFVSAISLGGFGIENMVKKLKNQ 335 (347)
Q Consensus 305 ~v~ll~~~~~~s~~~~~~~g~~~~~~~~~~~ 335 (347)
.++.....+..-....-........++..+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 414 MVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHh
Done!