Query 019031
Match_columns 347
No_of_seqs 165 out of 2010
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 1.4E-21 3.1E-26 164.5 1.9 260 19-321 97-375 (419)
2 KOG4341 F-box protein containi 99.7 4.1E-19 9E-24 156.0 -6.5 179 16-229 67-255 (483)
3 PLN00113 leucine-rich repeat r 99.2 1.4E-10 3.1E-15 120.0 11.1 179 161-341 109-319 (968)
4 PLN00113 leucine-rich repeat r 99.1 3.6E-10 7.9E-15 117.0 10.0 104 237-341 259-367 (968)
5 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.3E-15 104.1 1.7 172 168-339 120-310 (505)
6 PLN03210 Resistant to P. syrin 99.0 3.6E-09 7.7E-14 110.8 11.8 155 188-345 654-840 (1153)
7 PF12937 F-box-like: F-box-lik 99.0 5.4E-10 1.2E-14 70.1 3.3 36 20-55 1-36 (47)
8 PLN03210 Resistant to P. syrin 98.9 5.3E-09 1.1E-13 109.5 11.9 124 216-345 778-908 (1153)
9 cd00116 LRR_RI Leucine-rich re 98.9 1.9E-09 4.2E-14 97.2 6.7 171 169-339 108-316 (319)
10 KOG2120 SCF ubiquitin ligase, 98.9 1.4E-10 3E-15 98.7 -1.2 202 136-341 153-374 (419)
11 KOG4341 F-box protein containi 98.8 3.2E-10 7E-15 100.6 -1.4 200 143-344 139-360 (483)
12 cd00116 LRR_RI Leucine-rich re 98.8 2.7E-09 5.8E-14 96.2 3.8 206 134-342 14-262 (319)
13 KOG4194 Membrane glycoprotein 98.7 1.5E-09 3.3E-14 100.2 -0.6 178 166-346 266-455 (873)
14 KOG1909 Ran GTPase-activating 98.7 2.1E-08 4.5E-13 87.4 5.3 153 188-340 89-280 (382)
15 KOG3207 Beta-tubulin folding c 98.7 4.2E-09 9.1E-14 94.1 0.6 153 167-319 170-336 (505)
16 KOG4194 Membrane glycoprotein 98.6 1.3E-08 2.9E-13 94.2 1.0 151 142-297 149-330 (873)
17 PF00646 F-box: F-box domain; 98.6 3E-08 6.5E-13 62.5 2.1 39 19-57 2-40 (48)
18 KOG1947 Leucine rich repeat pr 98.4 1.2E-07 2.6E-12 90.4 3.8 168 142-311 188-389 (482)
19 smart00256 FBOX A Receptor for 98.4 2.1E-07 4.5E-12 56.4 2.3 34 23-56 1-34 (41)
20 PF14580 LRR_9: Leucine-rich r 98.3 6.5E-07 1.4E-11 72.7 4.4 105 215-319 41-150 (175)
21 KOG3665 ZYG-1-like serine/thre 98.3 7.3E-07 1.6E-11 87.6 4.7 151 169-319 122-285 (699)
22 KOG0618 Serine/threonine phosp 98.2 1.9E-07 4.1E-12 90.9 -0.6 126 193-322 361-489 (1081)
23 PF14580 LRR_9: Leucine-rich r 98.2 5.5E-07 1.2E-11 73.1 1.2 124 213-338 16-148 (175)
24 KOG1909 Ran GTPase-activating 98.1 4.7E-06 1E-10 72.9 5.7 158 164-321 115-310 (382)
25 KOG0444 Cytoskeletal regulator 98.1 2.6E-08 5.7E-13 93.0 -8.6 186 155-343 159-375 (1255)
26 KOG0444 Cytoskeletal regulator 98.1 1.2E-07 2.6E-12 88.7 -5.0 174 143-324 198-377 (1255)
27 KOG2982 Uncharacterized conser 98.1 3.6E-06 7.8E-11 72.3 4.2 181 142-324 71-264 (418)
28 KOG1947 Leucine rich repeat pr 97.9 3.3E-06 7.1E-11 80.6 1.2 152 168-319 160-331 (482)
29 PRK15370 E3 ubiquitin-protein 97.9 3E-05 6.5E-10 77.2 7.7 31 217-248 263-293 (754)
30 PRK15387 E3 ubiquitin-protein 97.8 9.4E-05 2E-09 73.5 8.9 11 238-248 302-312 (788)
31 PRK15370 E3 ubiquitin-protein 97.6 0.00011 2.4E-09 73.2 6.6 180 142-341 178-378 (754)
32 KOG3665 ZYG-1-like serine/thre 97.5 5.8E-05 1.3E-09 74.4 3.5 102 142-248 122-230 (699)
33 KOG1859 Leucine-rich repeat pr 97.5 1.1E-05 2.3E-10 77.3 -1.8 199 106-319 50-264 (1096)
34 PRK15387 E3 ubiquitin-protein 97.5 0.00016 3.5E-09 71.9 5.8 32 169-202 242-273 (788)
35 KOG0617 Ras suppressor protein 97.3 5.3E-06 1.2E-10 65.7 -6.0 62 161-226 48-112 (264)
36 PRK15386 type III secretion pr 97.1 0.0013 2.9E-08 60.3 7.2 11 217-227 95-105 (426)
37 KOG4658 Apoptotic ATPase [Sign 97.1 0.00011 2.5E-09 74.3 0.3 19 279-297 712-730 (889)
38 COG5238 RNA1 Ran GTPase-activa 97.1 0.00092 2E-08 57.1 5.6 174 168-341 29-253 (388)
39 KOG1259 Nischarin, modulator o 97.1 7.4E-05 1.6E-09 64.5 -0.9 126 189-320 282-410 (490)
40 KOG4658 Apoptotic ATPase [Sign 97.1 0.0057 1.2E-07 62.3 12.2 148 169-318 523-677 (889)
41 KOG2982 Uncharacterized conser 97.1 0.00036 7.7E-09 60.3 2.9 149 170-319 46-209 (418)
42 COG5238 RNA1 Ran GTPase-activa 97.1 0.0015 3.3E-08 55.9 6.4 132 188-319 89-252 (388)
43 KOG0618 Serine/threonine phosp 97.1 0.00017 3.7E-09 71.0 0.7 58 168-227 358-418 (1081)
44 PF13855 LRR_8: Leucine rich r 97.0 0.00017 3.7E-09 47.7 0.1 38 281-319 22-59 (61)
45 PF13855 LRR_8: Leucine rich r 96.9 0.00075 1.6E-08 44.6 2.7 16 280-295 45-60 (61)
46 KOG2739 Leucine-rich acidic nu 96.9 0.00019 4E-09 60.8 -0.5 106 214-319 41-153 (260)
47 PRK15386 type III secretion pr 96.7 0.0067 1.5E-07 55.8 7.8 70 189-268 50-120 (426)
48 PF07723 LRR_2: Leucine Rich R 96.6 0.0038 8.2E-08 33.3 3.1 25 192-216 1-26 (26)
49 KOG2739 Leucine-rich acidic nu 96.5 0.00071 1.5E-08 57.4 0.4 103 166-268 40-151 (260)
50 KOG0281 Beta-TrCP (transducin 96.5 0.00087 1.9E-08 58.6 0.8 39 14-52 69-111 (499)
51 KOG2123 Uncharacterized conser 96.3 0.00041 8.8E-09 59.4 -2.2 96 237-336 18-123 (388)
52 COG4886 Leucine-rich repeat (L 96.2 0.0037 8E-08 58.2 3.4 79 169-249 116-197 (394)
53 KOG4237 Extracellular matrix p 96.2 0.001 2.2E-08 59.7 -0.6 57 143-203 68-128 (498)
54 KOG1259 Nischarin, modulator o 96.2 0.0072 1.6E-07 52.5 4.4 32 237-268 213-245 (490)
55 PLN03150 hypothetical protein; 96.1 0.013 2.9E-07 57.8 6.9 80 240-320 420-501 (623)
56 KOG0617 Ras suppressor protein 95.9 0.00031 6.7E-09 55.8 -4.6 123 142-268 56-181 (264)
57 PLN03150 hypothetical protein; 95.8 0.023 5E-07 56.2 6.8 103 218-320 420-526 (623)
58 KOG1644 U2-associated snRNP A' 95.8 0.012 2.5E-07 48.3 3.9 82 167-249 62-151 (233)
59 KOG2997 F-box protein FBX9 [Ge 95.8 0.0048 1E-07 53.7 1.7 35 18-52 105-144 (366)
60 KOG0472 Leucine-rich repeat pr 95.8 0.0001 2.2E-09 66.1 -8.7 81 212-296 224-309 (565)
61 PF12799 LRR_4: Leucine Rich r 95.7 0.013 2.9E-07 35.7 3.1 34 284-319 1-34 (44)
62 PF12799 LRR_4: Leucine Rich r 95.6 0.0073 1.6E-07 36.8 1.7 33 192-226 2-34 (44)
63 KOG3864 Uncharacterized conser 95.6 0.0027 5.8E-08 51.9 -0.4 80 170-249 102-187 (221)
64 KOG1859 Leucine-rich repeat pr 95.6 0.0014 3.1E-08 63.2 -2.5 157 169-338 84-262 (1096)
65 COG4886 Leucine-rich repeat (L 95.2 0.017 3.7E-07 53.7 3.3 167 142-319 116-287 (394)
66 KOG1644 U2-associated snRNP A' 95.1 0.041 8.8E-07 45.3 4.7 78 169-249 42-124 (233)
67 PLN03215 ascorbic acid mannose 95.0 0.015 3.2E-07 52.9 2.2 38 19-56 3-41 (373)
68 KOG0472 Leucine-rich repeat pr 94.9 0.00074 1.6E-08 60.8 -6.0 153 159-319 150-307 (565)
69 KOG2123 Uncharacterized conser 94.7 0.0017 3.7E-08 55.7 -4.1 98 143-246 20-125 (388)
70 KOG3864 Uncharacterized conser 94.7 0.012 2.6E-07 48.2 0.8 61 258-319 123-186 (221)
71 KOG0531 Protein phosphatase 1, 94.0 0.0059 1.3E-07 57.3 -2.7 79 167-249 93-173 (414)
72 PF13306 LRR_5: Leucine rich r 92.2 0.15 3.2E-06 38.9 3.2 13 212-224 31-43 (129)
73 smart00367 LRR_CC Leucine-rich 91.4 0.12 2.6E-06 27.3 1.3 17 329-345 1-17 (26)
74 KOG0274 Cdc4 and related F-box 91.4 0.081 1.8E-06 51.0 1.0 42 12-53 100-141 (537)
75 KOG0531 Protein phosphatase 1, 90.8 0.034 7.4E-07 52.2 -2.2 126 167-297 70-199 (414)
76 smart00367 LRR_CC Leucine-rich 90.1 0.25 5.5E-06 26.0 1.8 22 190-211 1-23 (26)
77 PF13516 LRR_6: Leucine Rich r 89.4 0.28 6.1E-06 25.2 1.6 22 190-211 1-22 (24)
78 PF13013 F-box-like_2: F-box-l 87.3 0.37 8E-06 35.7 1.7 30 19-48 21-50 (109)
79 PF13306 LRR_5: Leucine rich r 86.5 1.1 2.3E-05 34.1 4.0 78 167-246 10-89 (129)
80 KOG0532 Leucine-rich repeat (L 86.3 0.092 2E-06 49.8 -2.4 154 161-319 113-270 (722)
81 KOG4237 Extracellular matrix p 85.7 0.65 1.4E-05 42.4 2.6 35 258-292 320-354 (498)
82 KOG0532 Leucine-rich repeat (L 83.7 0.054 1.2E-06 51.3 -5.1 156 157-321 86-246 (722)
83 PF13504 LRR_7: Leucine rich r 83.3 0.76 1.6E-05 21.5 1.1 11 331-341 2-12 (17)
84 KOG4579 Leucine-rich repeat (L 80.1 0.23 5E-06 38.5 -2.0 98 218-318 29-132 (177)
85 KOG3926 F-box proteins [Amino 78.0 0.53 1.1E-05 40.3 -0.7 52 16-67 198-256 (332)
86 KOG3763 mRNA export factor TAP 77.9 1.7 3.8E-05 41.3 2.5 80 188-267 215-308 (585)
87 smart00368 LRR_RI Leucine rich 75.2 3 6.5E-05 22.3 2.0 23 191-213 2-24 (28)
88 KOG4308 LRR-containing protein 70.7 0.088 1.9E-06 50.0 -7.9 161 161-321 107-302 (478)
89 PF09372 PRANC: PRANC domain; 68.2 4.6 0.0001 29.2 2.4 25 18-42 70-94 (97)
90 PF00560 LRR_1: Leucine Rich R 67.6 3.1 6.8E-05 20.8 1.0 13 170-182 1-13 (22)
91 KOG4579 Leucine-rich repeat (L 63.9 1.8 3.9E-05 33.7 -0.6 58 169-228 53-112 (177)
92 KOG3763 mRNA export factor TAP 56.1 11 0.00025 36.1 3.1 80 237-316 217-308 (585)
93 KOG4408 Putative Mg2+ and Co2+ 35.6 12 0.00026 33.5 -0.1 39 21-59 9-47 (386)
94 KOG1665 AFH1-interacting prote 35.5 20 0.00043 30.2 1.2 13 22-34 30-42 (302)
95 KOG1665 AFH1-interacting prote 35.3 38 0.00082 28.5 2.7 40 189-228 169-208 (302)
96 smart00370 LRR Leucine-rich re 35.0 30 0.00066 17.7 1.5 14 284-297 2-15 (26)
97 smart00369 LRR_TYP Leucine-ric 35.0 30 0.00066 17.7 1.5 14 284-297 2-15 (26)
98 smart00365 LRR_SD22 Leucine-ri 23.2 65 0.0014 17.0 1.4 13 284-296 2-14 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-21 Score=164.51 Aligned_cols=260 Identities=23% Similarity=0.264 Sum_probs=178.7
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhccCce---EEeeCCCcCCCCCCCCCCccccccccchhhhhhHhH
Q 019031 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI---LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKF 95 (347)
Q Consensus 19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 95 (347)
-+..|||||++.||+.|+.+++++++.|||||.++.+.-.. +++..+.+.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------------------------- 150 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------------------------- 150 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------------------------
Confidence 37789999999999999999999999999999987544332 1222222211
Q ss_pred HHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHH--HHcCceEEEeeeecCCcccccccccccccccccE
Q 019031 96 MDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANSVTN 173 (347)
Q Consensus 96 ~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~--~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~ 173 (347)
+...+.+ ...+..|+ +... +... ++...++ ...++++++ +.......-.+...+..|..|+.
T Consensus 151 -~~l~~l~------~rgV~v~R--lar~-~~~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 151 -DVLGRLL------SRGVIVFR--LARS-FMDQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred -hHHHHHH------hCCeEEEE--cchh-hhcC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHhhhh
Confidence 2222223 12333343 3311 1111 1223332 335799999 65544555566656667999999
Q ss_pred EEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCcc---cccc-CCCceEEEcc
Q 019031 174 LRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIMEIR 246 (347)
Q Consensus 174 L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~-~~~L~~L~l~ 246 (347)
|+|.|..++++. ....=.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|...... .+.+ -++|+.|+++
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 999999987654 345567999999999988 99999999999999999999999764421 1111 2799999999
Q ss_pred ccc-----cchhhhhhcCCCccEEEeeeeCCCCC-ceeeccCCCCCcEEEeecc-ccCchHHHHHHccCCCCCEEeecCc
Q 019031 247 SFS-----EEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 247 ~~~-----~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
||. +.+..+...+|+|.+|+++++....+ ....+-+++.|++|.++-+ .+....+. .+...|.|.+|++.+|
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccc
Confidence 987 45555666899999999996554333 2334567899999999544 34433333 3466899999999998
Q ss_pred CC
Q 019031 320 CL 321 (347)
Q Consensus 320 ~~ 321 (347)
-.
T Consensus 374 vs 375 (419)
T KOG2120|consen 374 VS 375 (419)
T ss_pred cC
Confidence 43
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.68 E-value=4.1e-19 Score=156.02 Aligned_cols=179 Identities=20% Similarity=0.194 Sum_probs=109.2
Q ss_pred cccccc-CCchHHHHHHhcCCChhhhhhhcccchhhHhhhccCce-EEeeCCCcCCCCCCCCCCccccccccchhhhhhH
Q 019031 16 AMDRIS-ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVK 93 (347)
Q Consensus 16 ~~d~is-~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (347)
+.+.++ .||.|++..|||+|+.+.+++++++|+-|+.+.-.... -.++.-+|....+
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------------- 125 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------------- 125 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---------------------
Confidence 445565 69999999999999999999999999999976322111 0111111111100
Q ss_pred hHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHHHH--cCceEEEeeeecCCcccc-ccccccccccc
Q 019031 94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVY-TLPQAIFSANS 170 (347)
Q Consensus 94 ~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~--~~l~~L~~~l~~~~~~~~-~l~~~~~~~~~ 170 (347)
-..|..++ ...++.++.++++-. ...-++-+..+.. +++++|. +..+..-.. .+......|+.
T Consensus 126 --g~VV~~~~---~Rcgg~lk~LSlrG~-------r~v~~sslrt~~~~CpnIehL~--l~gc~~iTd~s~~sla~~C~~ 191 (483)
T KOG4341|consen 126 --GGVVENMI---SRCGGFLKELSLRGC-------RAVGDSSLRTFASNCPNIEHLA--LYGCKKITDSSLLSLARYCRK 191 (483)
T ss_pred --CcceehHh---hhhcccccccccccc-------ccCCcchhhHHhhhCCchhhhh--hhcceeccHHHHHHHHHhcch
Confidence 01222222 122467777776633 1122233333332 7888887 665543222 22222234788
Q ss_pred ccEEEEeeeeccCC-C---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC
Q 019031 171 VTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL 229 (347)
Q Consensus 171 L~~L~L~~~~l~~~-~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~ 229 (347)
|++|.|..|..... . ...+||+|++|+++++.- ++.+++.+..+|..++++.+++|...
T Consensus 192 l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 192 LRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred hhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 88888888652211 1 456788888888888876 66778888888888888888877653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=1.4e-10 Score=120.04 Aligned_cols=179 Identities=19% Similarity=0.176 Sum_probs=80.6
Q ss_pred cccccc-ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccc--
Q 019031 161 LPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVS-- 235 (347)
Q Consensus 161 l~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~-- 235 (347)
+|..++ .+++|++|+|++|.+........+++|++|+|+++.+... +...+.++++|+.|++.+|..... -.+.
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 444443 4555666666555543322233455555555555544211 111234455555555554432111 1122
Q ss_pred ----------------------cCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031 236 ----------------------KASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (347)
Q Consensus 236 ----------------------~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 291 (347)
.+++|+.|.+.++. ..+......+++|++|+++.+......+..++.+++|+.|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 34455555555443 011111124455555555533332223333455556666666
Q ss_pred eccccCchHHHHHHccCCCCCEEeecCcCCchhh---hccCcccceEeccccc
Q 019031 292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK 341 (347)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~ 341 (347)
.++.+.+. +...+..+++|+.|++++|.....+ ....++|+.|++.++.
T Consensus 268 ~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 268 YQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred cCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 55544432 1222344566666666665322221 2345567777766554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.09 E-value=3.6e-10 Score=116.99 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=50.8
Q ss_pred CCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEE
Q 019031 237 ASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (347)
Q Consensus 237 ~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 314 (347)
+++|+.|.+.++. .........+++|++|+++.+......+..+..+++|+.|++.++.+... ....+..+++|+.|
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 337 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-CChhHhcCCCCCEE
Confidence 4455555555443 01111112345555555553333222222344566666666665555432 22334556777777
Q ss_pred eecCcCCchhh---hccCcccceEeccccc
Q 019031 315 FVTRCCLPGKI---KISSNQLKNLLFRSCK 341 (347)
Q Consensus 315 ~l~~c~~~~~~---~~~~~~L~~L~l~~c~ 341 (347)
++.+|.....+ ....++|+.|+++++.
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 77666432222 2244667777776554
No 5
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-10 Score=104.08 Aligned_cols=172 Identities=20% Similarity=0.198 Sum_probs=123.2
Q ss_pred cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC---CccccccCCCc
Q 019031 168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKL 240 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~---~~~~~~~~~~L 240 (347)
.+.|+.+.|.++.+..++ ....||+++.|+|+++-+ ....+..++.-.|+||.|+++.+... .......+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 467888899888876655 567899999999999988 77888899999999999999876532 11112246789
Q ss_pred eEEEccccc---cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031 241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 317 (347)
|.|.+.+|. ..+..+...+|+|+.|.+..+............+..|+.|+|+++.+.+.........+|.|+.|.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999997 45566667899999999985421111122234567888888888887775555566778888888888
Q ss_pred CcCCch---------hhhccCcccceEeccc
Q 019031 318 RCCLPG---------KIKISSNQLKNLLFRS 339 (347)
Q Consensus 318 ~c~~~~---------~~~~~~~~L~~L~l~~ 339 (347)
.|..-+ .....+|+|+.|.+..
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeeccc
Confidence 772211 1234667888887654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.97 E-value=3.6e-09 Score=110.76 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=79.2
Q ss_pred CCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc-cCCCceEEEccccccchhhhhhcCCCccEEE
Q 019031 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEIRSFSEEIEIVEISVPSLQQLT 266 (347)
Q Consensus 188 ~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~ 266 (347)
..+++|++|+|.+|..- ..+..-+..+++|+.|++.+|..+..+... ++++|+.|.+.+|. .+..+....++|+.|.
T Consensus 654 s~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 654 SMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLD 731 (1153)
T ss_pred ccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeee
Confidence 34455555555544321 011122344555555555555544433221 34566666666664 3333333334555555
Q ss_pred eeeeCCCC-Ccee----------------------------eccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031 267 LLFYGARR-PRVV----------------------------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 267 l~~~~~~~-~~~~----------------------------~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 317 (347)
+..+.... +..+ ....+++|+.|++.++..... ++..+.++++|+.|++.
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECC
Confidence 54322110 0000 001134666666655432221 33445678889999999
Q ss_pred CcCCchhhhc--cCcccceEecccccCccc
Q 019031 318 RCCLPGKIKI--SSNQLKNLLFRSCKYLKL 345 (347)
Q Consensus 318 ~c~~~~~~~~--~~~~L~~L~l~~c~~l~~ 345 (347)
+|..++.+.. ..++|+.|++++|.+++.
T Consensus 811 ~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 811 NCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred CCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 8876665532 467888888888877653
No 7
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=5.4e-10 Score=70.15 Aligned_cols=36 Identities=31% Similarity=0.683 Sum_probs=31.4
Q ss_pred ccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhc
Q 019031 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV 55 (347)
Q Consensus 20 is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~ 55 (347)
|+.||+||+.+||++|+.+|+++++.|||+|+.+..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.94 E-value=5.3e-09 Score=109.48 Aligned_cols=124 Identities=24% Similarity=0.315 Sum_probs=76.3
Q ss_pred CCccEEEeeccCCCCcc--ccccCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031 216 PLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (347)
Q Consensus 216 p~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 291 (347)
++|+.|++.+|.....+ .+.++++|+.|++.+|. .+..+. ...++|++|.+++|...... ....++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~~L~sL~~L~Ls~c~~L~~~---p~~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGINLESLESLDLSGCSRLRTF---PDISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCC-CcCeeCCCCCccccCEEECCCCCccccc---cccccccCEeEC
Confidence 44555555554433322 13345666666666665 333322 14566666666643322111 122357888888
Q ss_pred eccccCchHHHHHHccCCCCCEEeecCcCCchhhhc---cCcccceEecccccCccc
Q 019031 292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKL 345 (347)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~l~~ 345 (347)
.++.+.. ++..+..+++|+.|++.+|..+..+.. ..++|+.+++.+|.+|++
T Consensus 854 s~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 854 SRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred CCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence 7777754 455677899999999999988776543 456788889999998874
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.9e-09 Score=97.19 Aligned_cols=171 Identities=19% Similarity=0.151 Sum_probs=95.0
Q ss_pred ccccEEEEeeeeccCCC------CcCCC-CCcCEEEeeeeeeChHH---HHHHHhcCCCccEEEeeccCCCCc----c--
Q 019031 169 NSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWGLKH----L-- 232 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~------~~~~~-~~L~~L~L~~~~~~~~~---l~~i~~~cp~Le~L~l~~c~~~~~----~-- 232 (347)
++|++|++++|.+.... ....+ ++|+.|+++++.++... +...+..+++|+.|++.+|..... +
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 44888888877655211 12344 77788888887774332 333455667788888877653211 1
Q ss_pred ccccCCCceEEEccccc---cc---hhhhhhcCCCccEEEeeeeCCCCCceeec-----cCCCCCcEEEeeccccCchHH
Q 019031 233 CVSKASKLKIMEIRSFS---EE---IEIVEISVPSLQQLTLLFYGARRPRVVEV-----ARSPHLKKLDLVSVYFADNEF 301 (347)
Q Consensus 233 ~~~~~~~L~~L~l~~~~---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~~ 301 (347)
.+..+++|+.|++++|. .. +......+|+|++|+++++...+.....+ ...+.|++|++.++.+++...
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 12234578888887775 11 11222356778888887544332111111 123678888887777764333
Q ss_pred ---HHHHccCCCCCEEeecCcCCch-------hhhccC-cccceEeccc
Q 019031 302 ---NHLISKFPSLEDLFVTRCCLPG-------KIKISS-NQLKNLLFRS 339 (347)
Q Consensus 302 ---~~~~~~~~~L~~L~l~~c~~~~-------~~~~~~-~~L~~L~l~~ 339 (347)
...+..+++|+.++++++.... ...... +.|+.|+|.+
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 3334455677788877764332 122233 5777776654
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-10 Score=98.70 Aligned_cols=202 Identities=23% Similarity=0.197 Sum_probs=135.9
Q ss_pred HHHHHHcCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHH
Q 019031 136 IRLAVENGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL 211 (347)
Q Consensus 136 i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i 211 (347)
......+++..+. +-........+...... -..|++|+|+...+.... ....|.+|+.|+|.+...++.....+
T Consensus 153 l~~l~~rgV~v~R--lar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i 230 (419)
T KOG2120|consen 153 LGRLLSRGVIVFR--LARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI 230 (419)
T ss_pred HHHHHhCCeEEEE--cchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH
Confidence 3444556777777 43221122222222211 246999999986655433 34678999999999999988877775
Q ss_pred HhcCCCccEEEeeccCCCCcc----ccccCCCceEEEccccccchhhhh----hcCCCccEEEeeeeCCCCC---ceeec
Q 019031 212 ASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRP---RVVEV 280 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~---~~~~~ 280 (347)
. .-..|+.|+|++|.+++.- .+++|..|.+|+++.|...-+.+. ---++|..|.++++..+-. .....
T Consensus 231 A-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 231 A-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred h-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence 4 4578999999999998753 346789999999999971111122 2458899999995433211 11224
Q ss_pred cCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecCcCCch--hh--hccCcccceEeccccc
Q 019031 281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPG--KI--KISSNQLKNLLFRSCK 341 (347)
Q Consensus 281 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~--~~~~~~L~~L~l~~c~ 341 (347)
..||+|.+|||+++. +++. ....+..++.|++|.++.|-.+. .+ ....|.|.+|++.+|-
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 679999999997554 5554 44555679999999999994432 22 2367899999988763
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=3.2e-10 Score=100.60 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=112.5
Q ss_pred CceEEEeeeecCCc-ccccccccccccccccEEEEeeeecc-CCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCC
Q 019031 143 GVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLE-QPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECP 216 (347)
Q Consensus 143 ~l~~L~~~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~-~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp 216 (347)
.+++|. +.++.. ....+......|+++++|.+.+|... ... ....|++|+.|.|..|.. ++..++.+..+||
T Consensus 139 ~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 455555 443322 22223333344666666666666521 111 334566666666666443 6666666666666
Q ss_pred CccEEEeeccCCCCc----cccccCCCceEEEccccc-cch---hhhhhcCCCccEEEeeeeCCC-CCceee-ccCCCCC
Q 019031 217 LLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEI---EIVEISVPSLQQLTLLFYGAR-RPRVVE-VARSPHL 286 (347)
Q Consensus 217 ~Le~L~l~~c~~~~~----~~~~~~~~L~~L~l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~-~~~~~~-~~~~~~L 286 (347)
+|++|+++.|+.+.. ...+++..++.+...+|. .+. ..+.-.++-+..+++..|... +...+. --.+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 666666666655443 222345556666555665 112 222223344444443322221 111111 1347788
Q ss_pred cEEEee-ccccCchHHHHHHccCCCCCEEeecCcCCch-----hhhccCcccceEecccccCcc
Q 019031 287 KKLDLV-SVYFADNEFNHLISKFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCKYLK 344 (347)
Q Consensus 287 ~~L~L~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-----~~~~~~~~L~~L~l~~c~~l~ 344 (347)
+.|+.+ ..++++..+..+..++++|+.|.+..|..+. .+..+++.|+.+++..|...+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 888884 3457777788888889999999999986554 345578899999988887654
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=2.7e-09 Score=96.24 Aligned_cols=206 Identities=17% Similarity=0.115 Sum_probs=134.7
Q ss_pred HHHHHHHH-cCceEEEeeeecCCcc---cccccccccccccccEEEEeeeeccC--CC------CcCCCCCcCEEEeeee
Q 019031 134 RWIRLAVE-NGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERV 201 (347)
Q Consensus 134 ~~i~~~~~-~~l~~L~~~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~l~~--~~------~~~~~~~L~~L~L~~~ 201 (347)
.|...+.. .+++.++ +..+... ...++..+...++|++|.++++.+.. .. ....+++|++|+++++
T Consensus 14 ~~~~~~~~l~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 14 RATELLPKLLCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred chHHHHHHHhhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 44443322 5699999 6554332 22344445556789999999887652 11 2345789999999999
Q ss_pred eeCh---HHHHHHHhcCCCccEEEeeccCCCCc------cccccC-CCceEEEccccc-c--chhhh---hhcCCCccEE
Q 019031 202 CLDE---QMVQKLASECPLLEDLCFSNCWGLKH------LCVSKA-SKLKIMEIRSFS-E--EIEIV---EISVPSLQQL 265 (347)
Q Consensus 202 ~~~~---~~l~~i~~~cp~Le~L~l~~c~~~~~------~~~~~~-~~L~~L~l~~~~-~--~~~~~---~~~~p~L~~L 265 (347)
.+.. ..+..+..+ ++|++|++.+|..... ..+..+ ++|+.|++.+|. . ....+ ...+++|++|
T Consensus 92 ~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 92 ALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170 (319)
T ss_pred CCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence 8843 334444444 6799999999864311 122345 899999999997 1 11122 2356789999
Q ss_pred EeeeeCCCCCc----eeeccCCCCCcEEEeeccccCchHH---HHHHccCCCCCEEeecCcCCch----hhhcc----Cc
Q 019031 266 TLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEF---NHLISKFPSLEDLFVTRCCLPG----KIKIS----SN 330 (347)
Q Consensus 266 ~l~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~~~~----~~~~~----~~ 330 (347)
+++++...... ...+...++|++|++.++.+.+... ...+..+++|+.|++++|.... .+... .+
T Consensus 171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~ 250 (319)
T cd00116 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI 250 (319)
T ss_pred ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence 99866554211 1123456799999999888876543 3456678999999999985432 22222 37
Q ss_pred ccceEecccccC
Q 019031 331 QLKNLLFRSCKY 342 (347)
Q Consensus 331 ~L~~L~l~~c~~ 342 (347)
+|++|++.+|..
T Consensus 251 ~L~~L~l~~n~i 262 (319)
T cd00116 251 SLLTLSLSCNDI 262 (319)
T ss_pred CceEEEccCCCC
Confidence 999999999863
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.73 E-value=1.5e-09 Score=100.23 Aligned_cols=178 Identities=21% Similarity=0.195 Sum_probs=113.8
Q ss_pred cccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCC--CCccccccCCCce
Q 019031 166 FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLK 241 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~--~~~~~~~~~~~L~ 241 (347)
+.|.++++|+|..+++.... ...++..|+.|+|+++.+..-.... -+.|++|++|+|+++.. +..-++..+.+|+
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 44667777777777654332 4556777777888777652222222 34588888888887753 2233344567888
Q ss_pred EEEccccc-cchhhhh-hcCCCccEEEeeeeCC---CCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEee
Q 019031 242 IMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316 (347)
Q Consensus 242 ~L~l~~~~-~~~~~~~-~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 316 (347)
.|.++.+. +.+.... ..+.+|+.|+++.+.. .+.....+..++.|+.|.+.++++..- -...+.++++||+|++
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDL 423 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecC
Confidence 89888875 3333333 3678899999873222 122233456799999999999987643 3456788999999999
Q ss_pred cCcCCch---hhhccCcccceEecccccCcccc
Q 019031 317 TRCCLPG---KIKISSNQLKNLLFRSCKYLKLC 346 (347)
Q Consensus 317 ~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~ 346 (347)
.+..... ...... .|++|.+.....|=+|
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 9864322 112222 6777777666655554
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=2.1e-08 Score=87.37 Aligned_cols=153 Identities=25% Similarity=0.334 Sum_probs=103.0
Q ss_pred CCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeeccCCCC-----------cc----ccccCCCceEEEccccc
Q 019031 188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK-----------HL----CVSKASKLKIMEIRSFS 249 (347)
Q Consensus 188 ~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~c~~~~-----------~~----~~~~~~~L~~L~l~~~~ 249 (347)
.++|.|++|+|+.+.+ +...+..++++|..|++|.+.+|..-. .+ .+..-++|+.+....+.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4566777777777766 456788888999999999999995411 01 12234799999888776
Q ss_pred ------cchhhhhhcCCCccEEEeeeeCCCCCce----eeccCCCCCcEEEeeccccCch---HHHHHHccCCCCCEEee
Q 019031 250 ------EEIEIVEISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFV 316 (347)
Q Consensus 250 ------~~~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l 316 (347)
..+.......|.|+.+.+..++....-. ..+..||+|+.|||..+.++.. .+...++.+|+|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 1222223356899999998666543321 2357799999999988887753 34455677888999999
Q ss_pred cCcCCc--------hhhhccCcccceEecccc
Q 019031 317 TRCCLP--------GKIKISSNQLKNLLFRSC 340 (347)
Q Consensus 317 ~~c~~~--------~~~~~~~~~L~~L~l~~c 340 (347)
++|-.- ..+....|+|+.|.+.++
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 998211 122335677777776654
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.2e-09 Score=94.14 Aligned_cols=153 Identities=21% Similarity=0.176 Sum_probs=107.8
Q ss_pred ccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc--cccCCCce
Q 019031 167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLK 241 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~--~~~~~~L~ 241 (347)
..++|+.|+|+.+.+..+. ....++.|++|.|++|.++..++..++..||.|+.|.+.++..+.... ..-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 4688889999888765443 334688999999999999989999999999999999998885432211 11245899
Q ss_pred EEEccccc-c--chhhhhhcCCCccEEEeeeeCCCCCceee------ccCCCCCcEEEeeccccCchHHHHHHccCCCCC
Q 019031 242 IMEIRSFS-E--EIEIVEISVPSLQQLTLLFYGARRPRVVE------VARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (347)
Q Consensus 242 ~L~l~~~~-~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 312 (347)
.|++++++ - ........+|.|..|.++.++........ ...+|+|+.|++..+.+.+.....-+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 99999886 1 11122236788888888866653322111 256789999999888887655555556678888
Q ss_pred EEeecCc
Q 019031 313 DLFVTRC 319 (347)
Q Consensus 313 ~L~l~~c 319 (347)
.|.+...
T Consensus 330 ~l~~~~n 336 (505)
T KOG3207|consen 330 HLRITLN 336 (505)
T ss_pred hhhcccc
Confidence 8886643
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.58 E-value=1.3e-08 Score=94.18 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=87.6
Q ss_pred cCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
+.++.|+ +...... +++..-+. ..++++|+|+++++.... .+.++.+|.+|.|++++++.-.. ..+...|+|
T Consensus 149 ~alrslD--LSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L 223 (873)
T KOG4194|consen 149 PALRSLD--LSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKL 223 (873)
T ss_pred hhhhhhh--hhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchh
Confidence 4677777 4332222 22222222 367999999998866432 55677788999999988842222 336678889
Q ss_pred cEEEeeccCC--CCccccccCCCceEEEccccc-c---------------------chhhhh----hcCCCccEEEeeee
Q 019031 219 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFS-E---------------------EIEIVE----ISVPSLQQLTLLFY 270 (347)
Q Consensus 219 e~L~l~~c~~--~~~~~~~~~~~L~~L~l~~~~-~---------------------~~~~~~----~~~p~L~~L~l~~~ 270 (347)
+.|+|..+.. ...+.+.++++|+.|.+..+. . .+..+. ..+..|+.|+++++
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 9888877643 223334444444444444332 0 122221 24556666666643
Q ss_pred CCCCCceeeccCCCCCcEEEeeccccC
Q 019031 271 GARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 271 ~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
.......-.++.+++|+.|+|+++.++
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhheeecchhhhcccceeEeccccccc
Confidence 332223334677888888888877665
No 17
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=3e-08 Score=62.51 Aligned_cols=39 Identities=38% Similarity=0.686 Sum_probs=32.4
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhccC
Q 019031 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSF 57 (347)
Q Consensus 19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~ 57 (347)
.+++||+|++.+||++|+.+|+++++.|||+|+.+....
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 367899999999999999999999999999999876553
No 18
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.45 E-value=1.2e-07 Score=90.42 Aligned_cols=168 Identities=21% Similarity=0.275 Sum_probs=105.8
Q ss_pred cCceEEEeeeecCCcc-cccccccccccccccEEEEeee-ecc---C---CCCcCCCCCcCEEEeeeee-eChHHHHHHH
Q 019031 142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWC-RLE---Q---PFDSIMLCSLKKLTLERVC-LDEQMVQKLA 212 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~-~l~---~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~ 212 (347)
+.++.+. +..+... ...+......|+.|+.|++++| ... . ......+++|+.|++.++. +++..+..+.
T Consensus 188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5566666 4332211 1113344556888999998873 211 1 1144567889999998888 5888888888
Q ss_pred hcCCCccEEEeeccCCCCcccc----ccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC------------
Q 019031 213 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------ 272 (347)
Q Consensus 213 ~~cp~Le~L~l~~c~~~~~~~~----~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~------------ 272 (347)
..||.|+.|.+.+|..++...+ ..+++|++|++.+|. ..+..+...+|+|+.|.+.....
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 8899999999888876543222 347889999999887 23444445678777776542210
Q ss_pred -----CCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031 273 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (347)
Q Consensus 273 -----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L 311 (347)
..........+++|+.+.+..+...+......+.+||+|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 012223346778888888866555554445566667666
No 19
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.38 E-value=2.1e-07 Score=56.39 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=31.7
Q ss_pred CchHHHHHHhcCCChhhhhhhcccchhhHhhhcc
Q 019031 23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (347)
Q Consensus 23 LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~ 56 (347)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987644
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=6.5e-07 Score=72.66 Aligned_cols=105 Identities=23% Similarity=0.176 Sum_probs=38.1
Q ss_pred CCCccEEEeeccCCCCccccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeCCCCCc-eeeccCCCCCcEEEe
Q 019031 215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDL 291 (347)
Q Consensus 215 cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~L 291 (347)
+.+|+.|++++|....--.+..+++|+.|.++++. ..+. .+...+|+|++|.++.+...+.. ...+..+|+|+.|++
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp -TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 34444444444432111122234555555555543 1111 11124566666666533332211 123467888888888
Q ss_pred eccccCch--HHHHHHccCCCCCEEeecCc
Q 019031 292 VSVYFADN--EFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 292 ~~~~~~~~--~~~~~~~~~~~L~~L~l~~c 319 (347)
.++.+... --..++..+|+|+.|+-...
T Consensus 121 ~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 121 EGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 87766531 12345677899999988765
No 21
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.28 E-value=7.3e-07 Score=87.60 Aligned_cols=151 Identities=18% Similarity=0.252 Sum_probs=106.7
Q ss_pred ccccEEEEeeee-ccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 169 NSVTNLRLVWCR-LEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~-l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
.+|++|+++|.. +...+ .+.-||+|++|.+.+..+...++..+..++|+|..|+++++..-.-.-++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 578888888754 22222 45679999999999999966779999999999999999988532223356678888888
Q ss_pred ccccc-cchh--hhhhcCCCccEEEeeeeCCCCCcee------eccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031 245 IRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (347)
Q Consensus 245 l~~~~-~~~~--~~~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 315 (347)
+.+-. .... .-...+.+|+.|+++.........+ ....+|+|+.||.++..+....+..+...-|+|+...
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 77654 1111 1123788999999984333222111 1245899999999999998888888888778887776
Q ss_pred ecCc
Q 019031 316 VTRC 319 (347)
Q Consensus 316 l~~c 319 (347)
.-.|
T Consensus 282 ~~~~ 285 (699)
T KOG3665|consen 282 ALDC 285 (699)
T ss_pred hhhh
Confidence 5544
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.23 E-value=1.9e-07 Score=90.94 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred cCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC--CCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeee
Q 019031 193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW--GLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLF 269 (347)
Q Consensus 193 L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~--~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~ 269 (347)
|..|.+.++.+++..+.. +.+.++|+.|++.++. .+....+..++.|+.|.++|+. ..+......++.|+.|....
T Consensus 361 Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 444444444444444443 3455666666666652 2233334445666666666664 22232223556666666652
Q ss_pred eCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCc
Q 019031 270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 322 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 322 (347)
+.. ..++ .+.+++.|+.+|+++++++...+.+.... |+|++|++++...+
T Consensus 440 N~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 440 NQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred Cce-eech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 222 2222 45778899999999888877655554433 89999999987543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=5.5e-07 Score=73.07 Aligned_cols=124 Identities=18% Similarity=0.082 Sum_probs=46.7
Q ss_pred hcCCCccEEEeeccCCCCccccc-cCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031 213 SECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (347)
Q Consensus 213 ~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (347)
.++-.+++|+|.++....--.+. .+.+|+.|+++++. +..+. ..+++|+.|.++.+............+|+|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~--I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ--ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS----S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccccchhhhhcCCCEEECCCCC--CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45667889999887542211232 36799999999985 44443 267999999998544432211112468999999
Q ss_pred EeeccccCchHHHHHHccCCCCCEEeecCcCCch------hhhccCcccceEecc
Q 019031 290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLLFR 338 (347)
Q Consensus 290 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~ 338 (347)
.+.++.+.+..-...+..+|+|+.|++.+++... .+....|+|+.|+-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999888763333455679999999999875432 234578899998743
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=4.7e-06 Score=72.95 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=88.5
Q ss_pred cccccccccEEEEeeeeccCCC---------------CcCCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeec
Q 019031 164 AIFSANSVTNLRLVWCRLEQPF---------------DSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSN 225 (347)
Q Consensus 164 ~~~~~~~L~~L~L~~~~l~~~~---------------~~~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~ 225 (347)
.+.+|.+|++|.|.+|.+.+.. -...=|.|+++...++++ +...+...+..+|.|+++.+..
T Consensus 115 ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence 3445677777777777654332 112235677777777777 2333445566677777777776
Q ss_pred cCCCC-c-----cccccCCCceEEEccccc------cchhhhhhcCCCccEEEeeeeCCCCCceee-----ccCCCCCcE
Q 019031 226 CWGLK-H-----LCVSKASKLKIMEIRSFS------EEIEIVEISVPSLQQLTLLFYGARRPRVVE-----VARSPHLKK 288 (347)
Q Consensus 226 c~~~~-~-----~~~~~~~~L~~L~l~~~~------~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~ 288 (347)
+.... . ..+.+||+|+.|++.++. ..+.......|+|+.+.+++|.....-... -...|+|+.
T Consensus 195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~v 274 (382)
T KOG1909|consen 195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEV 274 (382)
T ss_pred ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCce
Confidence 54321 1 122356777777777765 122222234566777777755443221111 133677777
Q ss_pred EEeeccccCchHHHHH---HccCCCCCEEeecCcCC
Q 019031 289 LDLVSVYFADNEFNHL---ISKFPSLEDLFVTRCCL 321 (347)
Q Consensus 289 L~L~~~~~~~~~~~~~---~~~~~~L~~L~l~~c~~ 321 (347)
|.+.++.++-.+...+ ...-|.|+.|.+++|..
T Consensus 275 l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 275 LELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7777776654332222 23357777777777643
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.11 E-value=2.6e-08 Score=93.03 Aligned_cols=186 Identities=17% Similarity=0.070 Sum_probs=101.0
Q ss_pred CcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc-
Q 019031 155 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH- 231 (347)
Q Consensus 155 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~- 231 (347)
......+|+.+.+..+|+.|+|+++.+.... ....+.+|.+|++++..-+...+..-+.+..+|.+++++.+.....
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 4455667777777777888888877655432 2223445555566665544444444445566677777765432111
Q ss_pred cccccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH--------
Q 019031 232 LCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE-------- 300 (347)
Q Consensus 232 ~~~~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-------- 300 (347)
-.+-.+++|++|+++++. +..+. -.-.+|++|.++.+.. ...+-.+-.+++|+.|.+.++.++-++
T Consensus 239 ecly~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred HHHhhhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 112235788888888875 22222 1235677777763322 112222234455555544433332222
Q ss_pred ---------------HHHHHccCCCCCEEeecCcCCc--hhhhccCcccceEecccccCc
Q 019031 301 ---------------FNHLISKFPSLEDLFVTRCCLP--GKIKISSNQLKNLLFRSCKYL 343 (347)
Q Consensus 301 ---------------~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~~~L~~L~l~~c~~l 343 (347)
.++-+..|+.|+.|.++....+ .......+.|+.|+++..++|
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence 2334455667777777654332 234456678888888887775
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.08 E-value=1.2e-07 Score=88.73 Aligned_cols=174 Identities=18% Similarity=0.088 Sum_probs=122.4
Q ss_pred CceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++.|. +.....+...+|..+-..++|..++++.+.++..+ ....+++|++|+|+++.++.-.+. .....+||.|
T Consensus 198 sL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtL 273 (1255)
T KOG0444|consen 198 SLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETL 273 (1255)
T ss_pred hhhhhh--cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhh
Confidence 455555 55556667778888888889999999988876544 567889999999999988433322 3456778999
Q ss_pred EeeccCCCCcc--ccccCCCceEEEccccc---cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 222 CFSNCWGLKHL--CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 222 ~l~~c~~~~~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
+++.+.. ..+ .+..+++|++|...++. .++..-.-.+.+|+.|.... +..+-++-.+..|++|+.|.|..+.+
T Consensus 274 NlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 274 NLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccce
Confidence 9987753 322 23456889988888765 23333333556777777763 33334455667899999999988776
Q ss_pred CchHHHHHHccCCCCCEEeecCcCCchh
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 324 (347)
.. +++.+.-+|.|+.|++...+++..
T Consensus 352 iT--LPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 352 IT--LPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ee--chhhhhhcCCcceeeccCCcCccC
Confidence 44 567777789999999999876653
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=3.6e-06 Score=72.26 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=129.5
Q ss_pred cCceEEEeeeecCCccccc-ccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
..+++++ +.......+. +...+-+.|.|+.|+|+.+.+..+- .+....+|++|.|.+...+.......+...|.+
T Consensus 71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5788888 5443333332 2223334799999999999887654 224556999999999999888889999999999
Q ss_pred cEEEeeccCC----CCccccc-cCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC-CCCceeeccCCCCCcE
Q 019031 219 EDLCFSNCWG----LKHLCVS-KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK 288 (347)
Q Consensus 219 e~L~l~~c~~----~~~~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~ 288 (347)
++|+++.+.- +..-.+. --+.++.|....|. .+...+.-..||+.++.+..+.. ..........+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999987632 1111111 12688899999987 34455556789999999975433 2223334566788889
Q ss_pred EEeeccccCchHHHHHHccCCCCCEEeecCcCCchh
Q 019031 289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK 324 (347)
Q Consensus 289 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 324 (347)
|+|..+++.+.+-..-+.++|.|..|.+...+..+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 999888888777777788999999999998765554
No 28
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=3.3e-06 Score=80.56 Aligned_cols=152 Identities=24% Similarity=0.331 Sum_probs=97.3
Q ss_pred cccccEEEEeeeeccCCC-----CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeecc-CCCCc------ccc
Q 019031 168 ANSVTNLRLVWCRLEQPF-----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC-WGLKH------LCV 234 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c-~~~~~------~~~ 234 (347)
+..++.+++..+...... ....+|+|+.|.+.++.. .+..+..+...||+|++|++.+| ..... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 344555555554322111 234478888888888866 66667788888999999998873 22211 112
Q ss_pred ccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC-C-CCceeeccCCCCCcEEEeeccc-cCchHHHHHHcc
Q 019031 235 SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-R-RPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK 307 (347)
Q Consensus 235 ~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~ 307 (347)
..+++|+.|++..|. ..+..+...+|+|+.|.+..|.. . .........+++|++|+++++. +++..+..+..+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 346788888888776 34444455688888888664442 2 2223334678889999996544 456767777777
Q ss_pred CCCCCEEeecCc
Q 019031 308 FPSLEDLFVTRC 319 (347)
Q Consensus 308 ~~~L~~L~l~~c 319 (347)
+|+|+.|.+..+
T Consensus 320 c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 320 CPNLRELKLLSL 331 (482)
T ss_pred Ccchhhhhhhhc
Confidence 888777666543
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.90 E-value=3e-05 Score=77.15 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=13.6
Q ss_pred CccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031 217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (347)
Q Consensus 217 ~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~ 248 (347)
+|+.|+++++. +..+.-.-.++|+.|++++|
T Consensus 263 ~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 263 ALQSLDLFHNK-ISCLPENLPEELRYLSVYDN 293 (754)
T ss_pred CCCEEECcCCc-cCccccccCCCCcEEECCCC
Confidence 45555555332 22221111235666666655
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.79 E-value=9.4e-05 Score=73.55 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=6.6
Q ss_pred CCceEEEcccc
Q 019031 238 SKLKIMEIRSF 248 (347)
Q Consensus 238 ~~L~~L~l~~~ 248 (347)
++|+.|+++++
T Consensus 302 ~~L~~LdLS~N 312 (788)
T PRK15387 302 PGLQELSVSDN 312 (788)
T ss_pred cccceeECCCC
Confidence 45666666655
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.62 E-value=0.00011 Score=73.22 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=104.7
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+...|+ +... ....+|..+ .++|+.|+|++|.+...+ ...+++|++|+++++.+.. +...+ .+.|+.|
T Consensus 178 ~~~~~L~--L~~~--~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELR--LKIL--GLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM 246 (754)
T ss_pred cCceEEE--eCCC--CcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence 4566666 4322 222444433 257999999998876432 2335799999999987741 12111 2579999
Q ss_pred EeeccCCCCccccccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeec-------------------c
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEV-------------------A 281 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~-------------------~ 281 (347)
++++|.. ..+...-..+|+.|+++++. +..+.. -.++|+.|.++++..... +..+ .
T Consensus 247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCcc
Confidence 9998863 33322222589999999764 444433 235899999885443211 0000 1
Q ss_pred CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhh-ccCcccceEeccccc
Q 019031 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK 341 (347)
Q Consensus 282 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~ 341 (347)
..++|+.|++.++.++. +...+ .++|+.|++++|... .+. ...++|+.|+|.+|.
T Consensus 323 l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 323 LPPGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNA 378 (754)
T ss_pred ccccceeccccCCcccc--CChhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCc
Confidence 22456666666555443 22111 357888888876422 221 123578888888774
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=5.8e-05 Score=74.44 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=45.0
Q ss_pred cCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~ 217 (347)
.++++|+ +.+...-....+..++. +|+|++|.+.+..+.... ...+||||..|+++++.++.- .-++..++
T Consensus 122 ~nL~~Ld--I~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLD--ISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcC--ccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence 4555555 43322222233333332 355555555554433221 334555555555555555211 11344555
Q ss_pred ccEEEeeccCCCCc---cccccCCCceEEEcccc
Q 019031 218 LEDLCFSNCWGLKH---LCVSKASKLKIMEIRSF 248 (347)
Q Consensus 218 Le~L~l~~c~~~~~---~~~~~~~~L~~L~l~~~ 248 (347)
|+.|.+.+-+.... ..+-++.+|+.|+++..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55555544333221 12223455555555543
No 33
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=1.1e-05 Score=77.26 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=100.0
Q ss_pred hhccCcccceEEEEEecCCCCCChhHHHHHHHHHH--HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccC
Q 019031 106 FCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAV--ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183 (347)
Q Consensus 106 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~--~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 183 (347)
....+.+++.|+...... ++...+.. ++... -.....+. +.......++-|-.++..++|++|.+.+|.+..
T Consensus 50 lg~~g~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lk--l~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 50 LGLSGAPVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLK--LLPSPARDPTEPISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred hccCCCCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeee--ecccCCCCCCCCceeccccceeeEEecCcchhh
Confidence 344577888888665532 22222222 22211 13445555 433344444547788899999999999998764
Q ss_pred CCCcCCC-CCcCEEEeeeeeeChHHHHHHHhcCC-----CccEEEe--eccC--CCC--ccccccCCCceEEEccccccc
Q 019031 184 PFDSIML-CSLKKLTLERVCLDEQMVQKLASECP-----LLEDLCF--SNCW--GLK--HLCVSKASKLKIMEIRSFSEE 251 (347)
Q Consensus 184 ~~~~~~~-~~L~~L~L~~~~~~~~~l~~i~~~cp-----~Le~L~l--~~c~--~~~--~~~~~~~~~L~~L~l~~~~~~ 251 (347)
.-+...+ ..|++|-..+. -.+++.+++.|- ..+-..| .+|. .+. .-...-+|.|++|+++.+.
T Consensus 124 ~~GL~~lr~qLe~LIC~~S---l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-- 198 (1096)
T KOG1859|consen 124 AKGLQELRHQLEKLICHNS---LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-- 198 (1096)
T ss_pred hhhhHHHHHhhhhhhhhcc---HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--
Confidence 3222222 24555533222 345555555432 1111111 1110 011 0111124667777777664
Q ss_pred hhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 252 IEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 252 ~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+.++. ..+|.|++|+++++.......+...+|. |..|.+.++.++. +. -+.++.+|+.|+++++
T Consensus 199 ~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 199 FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hh-hHHhhhhhhccchhHh
Confidence 33322 2667777777775544443334444444 6666666655443 22 2345666666666653
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.49 E-value=0.00016 Score=71.88 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=16.1
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeee
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVC 202 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~ 202 (347)
++|++|++++|.+...+ ...++|++|++.++.
T Consensus 242 ~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 242 PELRTLEVSGNQLTSLP--VLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEecCCccCccc--CcccccceeeccCCc
Confidence 56677777666554321 123445555544443
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.26 E-value=5.3e-06 Score=65.66 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=32.3
Q ss_pred ccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeecc
Q 019031 161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC 226 (347)
Q Consensus 161 l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c 226 (347)
.|+.+-...+|+.|++.++.+..-+ ....+|.|+.|+++.++. ...+ ++.+|.||.|++.++
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltyn 112 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYN 112 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhcccc
Confidence 3444445556666666666544322 345566666666654443 1111 344566666666554
No 36
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.15 E-value=0.0013 Score=60.29 Aligned_cols=11 Identities=36% Similarity=0.458 Sum_probs=5.7
Q ss_pred CccEEEeeccC
Q 019031 217 LLEDLCFSNCW 227 (347)
Q Consensus 217 ~Le~L~l~~c~ 227 (347)
.|+.|.+.+|.
T Consensus 95 nLe~L~Ls~Cs 105 (426)
T PRK15386 95 GLEKLTVCHCP 105 (426)
T ss_pred hhhheEccCcc
Confidence 45555555553
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.14 E-value=0.00011 Score=74.31 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=13.4
Q ss_pred eccCCCCCcEEEeeccccC
Q 019031 279 EVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 279 ~~~~~~~L~~L~L~~~~~~ 297 (347)
.+..+++|+.|.+.++.+.
T Consensus 712 ~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ccccccCcceEEEEcCCCc
Confidence 4566788888888666554
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.14 E-value=0.00092 Score=57.11 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred cccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeeee---ChH------HHHHHHhcCCCccEEEeeccCCCCc-
Q 019031 168 ANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCL---DEQ------MVQKLASECPLLEDLCFSNCWGLKH- 231 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~~---~~~------~l~~i~~~cp~Le~L~l~~c~~~~~- 231 (347)
...++.++|+|+.+.... ...+-.+|+..+++.... -++ .+-..+..||+|+..+++++..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 578899999999876432 334456777777765522 111 2233356899999999998754221
Q ss_pred -----cccccCCCceEEEccccc------cchh----h-----hhhcCCCccEEEeeeeCCCCCce----eeccCCCCCc
Q 019031 232 -----LCVSKASKLKIMEIRSFS------EEIE----I-----VEISVPSLQQLTLLFYGARRPRV----VEVARSPHLK 287 (347)
Q Consensus 232 -----~~~~~~~~L~~L~l~~~~------~~~~----~-----~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~ 287 (347)
-.+++...|++|.+.+|- ..+. . -..+.|.|+++.+..+....... ..+..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 113344789999999885 1111 1 11256889988886433321111 1122335788
Q ss_pred EEEeeccccCchHHHHH----HccCCCCCEEeecCcC--C-----chhhhccCcccceEeccccc
Q 019031 288 KLDLVSVYFADNEFNHL----ISKFPSLEDLFVTRCC--L-----PGKIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 288 ~L~L~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~--~-----~~~~~~~~~~L~~L~l~~c~ 341 (347)
.+.+..+.|...++..+ +..+.+|+.|+++... . +......++.|+.|.+..|-
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 88888777766533322 3457888888888752 1 12223356677888777774
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=7.4e-05 Score=64.48 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=82.7
Q ss_pred CCCCcCEEEeeeeeeC--hHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEE
Q 019031 189 MLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQL 265 (347)
Q Consensus 189 ~~~~L~~L~L~~~~~~--~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L 265 (347)
.+..|++++|+++.++ +++ ..-.|.++.|+++.+.....-+...+++|..|+++++. +....+....-|.+.|
T Consensus 282 TWq~LtelDLS~N~I~~iDES----vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES----VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchhhhhhh----hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3667888888888772 333 33468889998888765433345567889999998875 3444455577788888
Q ss_pred EeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
.+..+.. .....++.+=+|..||+.++++..-.-..-++++|-|++|.+.+.+
T Consensus 358 ~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8873222 1111234556677788888877653333445678888888887764
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.13 E-value=0.0057 Score=62.28 Aligned_cols=148 Identities=21% Similarity=0.178 Sum_probs=80.2
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccc--cccCCCceEEEc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI 245 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~--~~~~~~L~~L~l 245 (347)
...+.+.+.++.+........+|+|++|-+.++.. -...-...+...|.|..|++++|.....+. |+.+-+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 45677777766655444566777888888877752 111122335667888888888877655442 445667777777
Q ss_pred cccccchhhhhh---cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecC
Q 019031 246 RSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 246 ~~~~~~~~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
.++. +..++. ....|.+|++...+...........+++|+.|.+.... -.+.....-+..+.+|+.|.+..
T Consensus 603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 7764 333333 33345555554332212222222336777777774443 12222222234445555554443
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00036 Score=60.31 Aligned_cols=149 Identities=16% Similarity=0.119 Sum_probs=94.7
Q ss_pred cccEEEEeeeeccCCC----CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCC---CCccccccCCCce
Q 019031 170 SVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG---LKHLCVSKASKLK 241 (347)
Q Consensus 170 ~L~~L~L~~~~l~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~---~~~~~~~~~~~L~ 241 (347)
.++-|.+-+|.++..+ ....+..++.++|.++.+ ..+.+..|+.+.|.|+.|+|+.+.. ++.+.. ...+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceE
Confidence 4556677777776554 345678899999999999 7778999999999999999986543 233332 246999
Q ss_pred EEEccccc---cchhhhhhcCCCccEEEeeeeCCC---CCceeeccCCCCCcEEEeeccccC-chHHHHHHccCCCCCEE
Q 019031 242 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGAR---RPRVVEVARSPHLKKLDLVSVYFA-DNEFNHLISKFPSLEDL 314 (347)
Q Consensus 242 ~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L 314 (347)
.|.+.+.. ..........|.++.|.++.+... ....-.-..-+.+++|+...|... ......+...|||+..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 99999875 222233346677777777633210 000001122346666766555432 22334555667888888
Q ss_pred eecCc
Q 019031 315 FVTRC 319 (347)
Q Consensus 315 ~l~~c 319 (347)
.+..|
T Consensus 205 ~v~e~ 209 (418)
T KOG2982|consen 205 FVCEG 209 (418)
T ss_pred eeecC
Confidence 88777
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.0015 Score=55.86 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeeccCCCC--c-------------cccccCCCceEEEccccc
Q 019031 188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK--H-------------LCVSKASKLKIMEIRSFS 249 (347)
Q Consensus 188 ~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~c~~~~--~-------------~~~~~~~~L~~L~l~~~~ 249 (347)
..||.|++.+|+.+.+ ..+.+..++++...|+.|.+.+|..-. . ..+..-|.|+......+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3455555555555555 345677888888999999999885311 0 112235889998888765
Q ss_pred --cchh----hhhhcCCCccEEEeeeeCCCCC-----ceeeccCCCCCcEEEeeccccCchHHH---HHHccCCCCCEEe
Q 019031 250 --EEIE----IVEISVPSLQQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADNEFN---HLISKFPSLEDLF 315 (347)
Q Consensus 250 --~~~~----~~~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~ 315 (347)
.+.. .....--+|+.+.+..++.... ....+..+++|+.|||..+.++..+.. ..+...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 1111 1112336899999987666432 111245689999999998888754433 3345567889999
Q ss_pred ecCc
Q 019031 316 VTRC 319 (347)
Q Consensus 316 l~~c 319 (347)
+..|
T Consensus 249 lnDC 252 (388)
T COG5238 249 LNDC 252 (388)
T ss_pred ccch
Confidence 9999
No 43
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.06 E-value=0.00017 Score=71.03 Aligned_cols=58 Identities=21% Similarity=0.099 Sum_probs=30.8
Q ss_pred cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeC-hHHHHHHHhcCCCccEEEeeccC
Q 019031 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCW 227 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~i~~~cp~Le~L~l~~c~ 227 (347)
.+.|+.|.+.++.+.... ...++++||.|+|+++++. -.+ +-+...+.||+|.++++.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNK 418 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH--HHHhchHHhHHHhcccch
Confidence 345666666666655433 3456666666666666552 111 113445556666666553
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.01 E-value=0.00017 Score=47.68 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=16.5
Q ss_pred cCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 281 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
..+++|++|+++++.++.- ....+..+++|++|++++|
T Consensus 22 ~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 3445555555544444321 1123344555555555443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.92 E-value=0.00075 Score=44.56 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=9.5
Q ss_pred ccCCCCCcEEEeeccc
Q 019031 280 VARSPHLKKLDLVSVY 295 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~ 295 (347)
+..+++|+.|+++++.
T Consensus 45 f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 45 FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTSTTESEEEETSSS
T ss_pred HcCCCCCCEEeCcCCc
Confidence 4556666666665543
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00019 Score=60.84 Aligned_cols=106 Identities=23% Similarity=0.167 Sum_probs=63.0
Q ss_pred cCCCccEEEeeccCCCCccccccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcE
Q 019031 214 ECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKK 288 (347)
Q Consensus 214 ~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~ 288 (347)
....|+.|++.++...+....+.+|+||+|.++.+. .++..+...+|+|+++.++.+....... -....+++|..
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344455555666654444455566788888888773 3455555567888888888544432111 12355677778
Q ss_pred EEeeccccCc--hHHHHHHccCCCCCEEeecCc
Q 019031 289 LDLVSVYFAD--NEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 289 L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~c 319 (347)
|++..+..+. .--..++..+|+|++|+-..+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8886554432 223345566788888776654
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.70 E-value=0.0067 Score=55.79 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCCCcCEEEeeeeeeChHHHHHHHhcCC-CccEEEeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEe
Q 019031 189 MLCSLKKLTLERVCLDEQMVQKLASECP-LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL 267 (347)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp-~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l 267 (347)
.++++++|++++|.+.. +. ..| +|+.|.+.+|..+..+.-.-.++|++|.+.+|. .+..+ .++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEe
Confidence 35777777777764411 11 122 477777777766543321111467777777764 23221 235666666
Q ss_pred e
Q 019031 268 L 268 (347)
Q Consensus 268 ~ 268 (347)
.
T Consensus 120 ~ 120 (426)
T PRK15386 120 K 120 (426)
T ss_pred C
Confidence 4
No 48
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.55 E-value=0.0038 Score=33.25 Aligned_cols=25 Identities=48% Similarity=0.832 Sum_probs=22.4
Q ss_pred CcCEEEeeeeee-ChHHHHHHHhcCC
Q 019031 192 SLKKLTLERVCL-DEQMVQKLASECP 216 (347)
Q Consensus 192 ~L~~L~L~~~~~-~~~~l~~i~~~cp 216 (347)
+||+|+|..+.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.00071 Score=57.39 Aligned_cols=103 Identities=23% Similarity=0.125 Sum_probs=65.9
Q ss_pred cccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC--Cccc-cccCCCce
Q 019031 166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL--KHLC-VSKASKLK 241 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~--~~~~-~~~~~~L~ 241 (347)
-....|+.|++.++.+........+|+|++|.++.+.. ....+..++..||+|.+|.++++..- ..+. ...+++|+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 33456777777777766544556677888998888844 33456666777899999988877532 1111 22356778
Q ss_pred EEEccccc-----cchhhhhhcCCCccEEEee
Q 019031 242 IMEIRSFS-----EEIEIVEISVPSLQQLTLL 268 (347)
Q Consensus 242 ~L~l~~~~-----~~~~~~~~~~p~L~~L~l~ 268 (347)
+|.+.+|. .+-..+..-+|+|+.|+-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 88888776 2333444456777766654
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.51 E-value=0.00087 Score=58.63 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=36.2
Q ss_pred ccccccccCCc----hHHHHHHhcCCChhhhhhhcccchhhHh
Q 019031 14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ 52 (347)
Q Consensus 14 ~~~~d~is~LP----ddiL~~Ils~L~~~~~~~~s~vskrW~~ 52 (347)
+-+.|.|..|| |+|.+.||+||+..+++.+-+|||+|++
T Consensus 69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 34579999999 9999999999999999999999999985
No 51
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00041 Score=59.41 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEE
Q 019031 237 ASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL 314 (347)
Q Consensus 237 ~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 314 (347)
+.+.++|+.++|. +..+. ..+|-||.|.++-+.. .....+..|.+|+.|.|..+.|.+-.-.+.+.++|+|++|
T Consensus 18 l~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC--ccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3467778888874 54444 4788888888872211 1122356788899988887888776566677888999998
Q ss_pred eecCcCCch--------hhhccCcccceEe
Q 019031 315 FVTRCCLPG--------KIKISSNQLKNLL 336 (347)
Q Consensus 315 ~l~~c~~~~--------~~~~~~~~L~~L~ 336 (347)
-|..++... .+....|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888753322 2344678888876
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.24 E-value=0.0037 Score=58.19 Aligned_cols=79 Identities=19% Similarity=0.081 Sum_probs=37.6
Q ss_pred ccccEEEEeeeeccCCCCcCCC--CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc-cCCCceEEEc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIML--CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEI 245 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~--~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l 245 (347)
+.++.|.+.++.+......... ++|+.|+++++.+..-. .-+..+|.|+.|.+.++....-.... ..+.|+.|.+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4456666655554433222222 25666666666542110 12445666666666665432211111 3356666666
Q ss_pred cccc
Q 019031 246 RSFS 249 (347)
Q Consensus 246 ~~~~ 249 (347)
+++.
T Consensus 194 s~N~ 197 (394)
T COG4886 194 SGNK 197 (394)
T ss_pred cCCc
Confidence 6553
No 53
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.17 E-value=0.001 Score=59.66 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=37.3
Q ss_pred CceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCC--CCcCCCCCcCEEEeee-eee
Q 019031 143 GVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLER-VCL 203 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~-~~~ 203 (347)
...++. ++ ......+|..+|. .++|+.|+|+.+.++.. ..+.++++|.+|.+.+ +.+
T Consensus 68 ~tveir--Ld--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIR--LD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEE--ec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 444455 33 3344556666665 68899999999875533 2467788888888777 554
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.16 E-value=0.0072 Score=52.54 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=13.6
Q ss_pred CCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031 237 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (347)
Q Consensus 237 ~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~ 268 (347)
+.+|+.+.++.|. ..+..+...-|-|.++...
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVH 245 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeee
Confidence 3445555555544 2223333334444444443
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.13 E-value=0.013 Score=57.78 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=42.1
Q ss_pred ceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031 240 LKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 240 L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 317 (347)
++.|.+.++. ..+......+++|+.|+++.+......+..++.+++|+.|+|+++.+++. +...+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 5556666553 11111222456666666664444333333455666666666666665543 23344556666666666
Q ss_pred CcC
Q 019031 318 RCC 320 (347)
Q Consensus 318 ~c~ 320 (347)
++.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 653
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.89 E-value=0.00031 Score=55.84 Aligned_cols=123 Identities=19% Similarity=0.099 Sum_probs=76.8
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~ 220 (347)
.+++.|. + ......++|..+.+.+.|+.|+++.+++...+ +++.||.|+.|+|.++..++..+..-+-....|..
T Consensus 56 ~nlevln--~--~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 56 KNLEVLN--L--SNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhh--c--ccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 4566555 3 23456788989989999999999988866544 68899999999999998755544332333344555
Q ss_pred EEeeccCCC-CccccccCCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031 221 LCFSNCWGL-KHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (347)
Q Consensus 221 L~l~~c~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~ 268 (347)
|.+.++..- -.-.+..+.+|+.|.+.++. -.+.+-.-....|++|.+.
T Consensus 132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred HHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 666555431 11233445677777777664 1111111244556666665
No 57
>PLN03150 hypothetical protein; Provisional
Probab=95.79 E-value=0.023 Score=56.17 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=70.2
Q ss_pred ccEEEeeccCCCCc--cccccCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 218 Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
++.|+|.++..... ..+..+++|+.|+++++. ..+......+++|+.|+++.+......+..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677766643222 234567899999999886 12333345789999999997666555556678899999999998
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcC
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+.++......+.....++..+++.++.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 887765444443334567778887654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.79 E-value=0.012 Score=48.34 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=58.8
Q ss_pred ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCC-----ccccccCC
Q 019031 167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-----HLCVSKAS 238 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~-----~~~~~~~~ 238 (347)
..+.|..|.|.++++.... ....+|+|++|.|.++++ .-++++. +..||+|++|.+-+++... ...+..+|
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence 4578999999988754322 445688999999999888 5566666 4569999999998775422 12334578
Q ss_pred CceEEEccccc
Q 019031 239 KLKIMEIRSFS 249 (347)
Q Consensus 239 ~L~~L~l~~~~ 249 (347)
+|+.|++....
T Consensus 141 ~l~~LDF~kVt 151 (233)
T KOG1644|consen 141 SLRTLDFQKVT 151 (233)
T ss_pred cceEeehhhhh
Confidence 88888888654
No 59
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.78 E-value=0.0048 Score=53.69 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=30.6
Q ss_pred ccccCCchHHHHHHhc-----CCChhhhhhhcccchhhHh
Q 019031 18 DRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ 52 (347)
Q Consensus 18 d~is~LPddiL~~Ils-----~L~~~~~~~~s~vskrW~~ 52 (347)
+.|..||||||..||. .++.+++.++|+|||.|..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 5578999999999996 4567999999999999984
No 60
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.76 E-value=0.0001 Score=66.09 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=38.5
Q ss_pred HhcCCCccEEEeeccCC--CCccccccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCC
Q 019031 212 ASECPLLEDLCFSNCWG--LKHLCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHL 286 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L 286 (347)
+.+|..|.+|++..+.. +...+..+++++..|++.++. +..+. ....+|++|+++.+.. ...+..++++ +|
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk--lke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK--LKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HL 299 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc--cccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-ee
Confidence 34455555555544321 111122245666666666654 22222 2344566666663222 2334445555 66
Q ss_pred cEEEeecccc
Q 019031 287 KKLDLVSVYF 296 (347)
Q Consensus 287 ~~L~L~~~~~ 296 (347)
+.|.+.|+.+
T Consensus 300 ~~L~leGNPl 309 (565)
T KOG0472|consen 300 KFLALEGNPL 309 (565)
T ss_pred eehhhcCCch
Confidence 6666665543
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.75 E-value=0.013 Score=35.68 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++|+.|++.++.+++ +...+..+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467777777777765 4444667777777777776
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.64 E-value=0.0073 Score=36.84 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=15.9
Q ss_pred CcCEEEeeeeeeChHHHHHHHhcCCCccEEEeecc
Q 019031 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 226 (347)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c 226 (347)
+|++|+++++.+++ +...+..+|+|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45555555555531 2222455666666666555
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0027 Score=51.95 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=59.0
Q ss_pred cccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEE
Q 019031 170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM 243 (347)
Q Consensus 170 ~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L 243 (347)
.++.++-+++.+...+ ...+++.+++|.+..|.. ++..++.+-...|+|+.|+|++|..++.-- +..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566666666544333 456788888999998877 888888888888999999999998776532 3346788888
Q ss_pred Eccccc
Q 019031 244 EIRSFS 249 (347)
Q Consensus 244 ~l~~~~ 249 (347)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 877644
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.55 E-value=0.0014 Score=63.23 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=88.5
Q ss_pred ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEee-----------ccCCCCccc
Q 019031 169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFS-----------NCWGLKHLC 233 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~-----------~c~~~~~~~ 233 (347)
++++.|++....-..+. ...-|.+|+.|.|.+|.+ ...++..+- .+||.|.=. .|.+ .
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascgg----d 156 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGG----D 156 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcc----c
Confidence 56777777665533322 456788999999999988 544554443 234544321 2211 1
Q ss_pred cccCC---CceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHcc
Q 019031 234 VSKAS---KLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISK 307 (347)
Q Consensus 234 ~~~~~---~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 307 (347)
+.+-+ +|...+++.+ .+..+. .-+|.|++|+++.+...... .+..+++|++|||+++.++. +..+-..
T Consensus 157 ~~ns~~Wn~L~~a~fsyN--~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~ 230 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYN--RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMV 230 (1096)
T ss_pred cccchhhhhHhhhhcchh--hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc--ccccchh
Confidence 11111 3443344433 232222 25689999999844333222 55789999999999888764 2222222
Q ss_pred CCCCCEEeecCcCCchhh-hccCcccceEecc
Q 019031 308 FPSLEDLFVTRCCLPGKI-KISSNQLKNLLFR 338 (347)
Q Consensus 308 ~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~ 338 (347)
--.|..|.++++..-+-- .....+|+.|+++
T Consensus 231 gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred hhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 223889999885221111 2245567777664
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.16 E-value=0.017 Score=53.70 Aligned_cols=167 Identities=20% Similarity=0.137 Sum_probs=102.4
Q ss_pred cCceEEEeeeecCCcccccccccccccc-cccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
..+..++ +. ......++......+ +|+.|+++++.+.... ....+++|+.|.++.+.+.+- .......+.|+
T Consensus 116 ~~l~~L~--l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLD--LD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLN 189 (394)
T ss_pred cceeEEe--cC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhh--hhhhhhhhhhh
Confidence 3466666 43 234445555555554 8999999998877642 568899999999999987422 23233688899
Q ss_pred EEEeeccCCCCccccc--cCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 220 DLCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 220 ~L~l~~c~~~~~~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
.|++.++.. ..+... ....|+.|.+.++. ...........++..+.+..... ....-.++.+++++.|++.++.+
T Consensus 190 ~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 190 NLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred heeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceeccccccc
Confidence 999988753 333321 22348888888773 11222223455555555431111 11123446677788888887777
Q ss_pred CchHHHHHHccCCCCCEEeecCc
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++..- +....+++.|++++.
T Consensus 268 ~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 268 SSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc---ccccCccCEEeccCc
Confidence 65322 566778888888763
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.05 E-value=0.041 Score=45.25 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=52.6
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeC--hHHHHHHHhcCCCccEEEeeccCCCC--c-cccccCCCceEE
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGLK--H-LCVSKASKLKIM 243 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~i~~~cp~Le~L~l~~c~~~~--~-~~~~~~~~L~~L 243 (347)
.....++|+.+.+........++.|.+|.|+.++++ +..+. .-.|+|..|.+.++.... . .....||+|+.|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345667788877665556778889999999999882 33333 346888888888764321 1 123457888888
Q ss_pred Eccccc
Q 019031 244 EIRSFS 249 (347)
Q Consensus 244 ~l~~~~ 249 (347)
.+-++.
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 887765
No 67
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.96 E-value=0.015 Score=52.86 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.8
Q ss_pred cccCCchHHHHHHhcCCC-hhhhhhhcccchhhHhhhcc
Q 019031 19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS 56 (347)
Q Consensus 19 ~is~LPddiL~~Ils~L~-~~~~~~~s~vskrW~~l~~~ 56 (347)
.+++||+|+|..|..+|+ .-|+++.+.|||.||.-...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478999999999999997 78999999999999975443
No 68
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.94 E-value=0.00074 Score=60.76 Aligned_cols=153 Identities=19% Similarity=0.125 Sum_probs=65.8
Q ss_pred ccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccC
Q 019031 159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA 237 (347)
Q Consensus 159 ~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~ 237 (347)
..+|..+.+|.+|..+.+.++.+...+ ...++..|++|++.++-.+ .+..-+++..+|+-|++..+....--.+.+|
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc 227 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFPGC 227 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence 344555555555555555555433222 1223555555555444331 1111133444455555544432222234445
Q ss_pred CCceEEEccccccchhhhh----hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCE
Q 019031 238 SKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED 313 (347)
Q Consensus 238 ~~L~~L~l~~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 313 (347)
..|++|++..+. ++.+. .+.+++..|++..+.. ...+..+-.+++|+.||++++.++. +..-++++ +|+.
T Consensus 228 s~L~Elh~g~N~--i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 228 SLLKELHVGENQ--IEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKF 301 (565)
T ss_pred HHHHHHHhcccH--HHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeee
Confidence 555555555442 22221 1445555555542211 1222222334555555555555543 23333334 4555
Q ss_pred EeecCc
Q 019031 314 LFVTRC 319 (347)
Q Consensus 314 L~l~~c 319 (347)
|.+.+.
T Consensus 302 L~leGN 307 (565)
T KOG0472|consen 302 LALEGN 307 (565)
T ss_pred hhhcCC
Confidence 555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0017 Score=55.68 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=63.3
Q ss_pred CceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEE
Q 019031 143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDL 221 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L 221 (347)
+++.|. ..++...+..+. ..++.|++|.|+-+.+..-.....|.+|+.|.|..+.+ +-..+.. +.+.|+|..|
T Consensus 20 ~vkKLN--cwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLN--CWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTL 93 (388)
T ss_pred Hhhhhc--ccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhH
Confidence 555555 443333333222 34678888888888877655667888888888888888 4444554 5678888888
Q ss_pred EeeccCCCC-------ccccccCCCceEEEcc
Q 019031 222 CFSNCWGLK-------HLCVSKASKLKIMEIR 246 (347)
Q Consensus 222 ~l~~c~~~~-------~~~~~~~~~L~~L~l~ 246 (347)
+|..++... ...++.+|+|++|+=.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 887654322 1223457888887544
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.012 Score=48.20 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred cCCCccEEEeeeeCCCCC--ceeeccCCCCCcEEEee-ccccCchHHHHHHccCCCCCEEeecCc
Q 019031 258 SVPSLQQLTLLFYGARRP--RVVEVARSPHLKKLDLV-SVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~L~-~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
.++.++.|.+..|...+. .....+-.++|+.|+|+ +..|++.++.. +..++||+.|.+.+-
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence 345555555553332221 11112345677777775 33466555543 345677777776664
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.02 E-value=0.0059 Score=57.27 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccccccEEEEeeeeccCCCC-cCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 167 SANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
.+++|..|++..+.+..... ...+++|+.|+++++.+ .-..+ ..++.|+.|++.++.....-....+++|+.+.
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhccc
Confidence 34566666666665554433 45566666666666665 22222 23344666666665432222222345666666
Q ss_pred ccccc
Q 019031 245 IRSFS 249 (347)
Q Consensus 245 l~~~~ 249 (347)
+.++.
T Consensus 169 l~~n~ 173 (414)
T KOG0531|consen 169 LSYNR 173 (414)
T ss_pred CCcch
Confidence 66554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.25 E-value=0.15 Score=38.92 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=5.5
Q ss_pred HhcCCCccEEEee
Q 019031 212 ASECPLLEDLCFS 224 (347)
Q Consensus 212 ~~~cp~Le~L~l~ 224 (347)
+.+|++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3445555555554
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.41 E-value=0.12 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=12.0
Q ss_pred CcccceEecccccCccc
Q 019031 329 SNQLKNLLFRSCKYLKL 345 (347)
Q Consensus 329 ~~~L~~L~l~~c~~l~~ 345 (347)
+++|++|+|++|.++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777777763
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.38 E-value=0.081 Score=51.03 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=38.2
Q ss_pred hcccccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031 12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (347)
Q Consensus 12 ~~~~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l 53 (347)
.+..+.|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 445678999999999999999999999999999999999854
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.78 E-value=0.034 Score=52.18 Aligned_cols=126 Identities=22% Similarity=0.092 Sum_probs=82.8
Q ss_pred ccccccEEEEeeeeccC-CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031 167 SANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l 245 (347)
.+..++.+.+..+.+.. ......+.+|+.|++.++.+. .+..++..+++|+.|+++++....-..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34566666666666554 224678899999999998872 122325679999999999886444444555677999999
Q ss_pred cccccchhhhhh--cCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccC
Q 019031 246 RSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 246 ~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~ 297 (347)
.++. +..+.. ..++|+.+++.++....... . ...+.+++.+.+.++.+.
T Consensus 148 ~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNL--ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCc--chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 9885 433332 26778888887544322111 1 366788888888766544
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.05 E-value=0.25 Score=26.04 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=11.0
Q ss_pred CCCcCEEEeeeeee-ChHHHHHH
Q 019031 190 LCSLKKLTLERVCL-DEQMVQKL 211 (347)
Q Consensus 190 ~~~L~~L~L~~~~~-~~~~l~~i 211 (347)
||+|++|+|++|.. ++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555543 55555443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.36 E-value=0.28 Score=25.22 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=13.9
Q ss_pred CCCcCEEEeeeeeeChHHHHHH
Q 019031 190 LCSLKKLTLERVCLDEQMVQKL 211 (347)
Q Consensus 190 ~~~L~~L~L~~~~~~~~~l~~i 211 (347)
+++|++|+|+++.+++.++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4677888888887777766654
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=87.32 E-value=0.37 Score=35.70 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=27.0
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhcccch
Q 019031 19 RISELPTFIIHHLMSYLSAKEVARTSVLSK 48 (347)
Q Consensus 19 ~is~LPddiL~~Ils~L~~~~~~~~s~vsk 48 (347)
.+.+||+|++..||.+-+..+.......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988887776
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.55 E-value=1.1 Score=34.06 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=33.9
Q ss_pred ccccccEEEEeee-eccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC-CCCccccccCCCceEEE
Q 019031 167 SANSVTNLRLVWC-RLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW-GLKHLCVSKASKLKIME 244 (347)
Q Consensus 167 ~~~~L~~L~L~~~-~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~-~~~~~~~~~~~~L~~L~ 244 (347)
.|.+|+.+.+... .--......++++|+.+++......-. ...+.+|+.|+.+.+.+.. .+..-....+++|+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeecccccccccccccccccccccccccccccccc
Confidence 3567777776532 111111356677788887765311111 1235667778888875421 12222233356666666
Q ss_pred cc
Q 019031 245 IR 246 (347)
Q Consensus 245 l~ 246 (347)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 64
No 80
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=86.31 E-value=0.092 Score=49.81 Aligned_cols=154 Identities=19% Similarity=0.112 Sum_probs=85.2
Q ss_pred ccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc-cccccCCC
Q 019031 161 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASK 239 (347)
Q Consensus 161 l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~ 239 (347)
+|..+.+...|+.|+|+.+.+...+...++=-|+.|.++++.++.-..+ +...+.|..|+.+.|....- -.+..+.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 3444455566677777766655444344445577777776665211111 23456677777776653221 11234566
Q ss_pred ceEEEccccccchhhhhh--cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH-HHHHccCCCCCEEee
Q 019031 240 LKIMEIRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF-NHLISKFPSLEDLFV 316 (347)
Q Consensus 240 L~~L~l~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l 316 (347)
|+.|.+..+. +..+.. ..-.|..|+++ |+.....++.+..+..|++|-|.++.+...-- ...-+...=.|+|++
T Consensus 191 lr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 191 LRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred HHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 7777777664 333321 23346777777 45545566777888888888888777654211 111122334566777
Q ss_pred cCc
Q 019031 317 TRC 319 (347)
Q Consensus 317 ~~c 319 (347)
+-|
T Consensus 268 qA~ 270 (722)
T KOG0532|consen 268 QAC 270 (722)
T ss_pred hhc
Confidence 766
No 81
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=85.69 E-value=0.65 Score=42.35 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=16.0
Q ss_pred cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEee
Q 019031 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (347)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 292 (347)
...+|+.|++.++......+..+.....|..|.+-
T Consensus 320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred ccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 34445555554333333333344445555555553
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=83.74 E-value=0.054 Score=51.32 Aligned_cols=156 Identities=19% Similarity=0.069 Sum_probs=97.9
Q ss_pred ccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCC-Ccccc
Q 019031 157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL-KHLCV 234 (347)
Q Consensus 157 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~-~~~~~ 234 (347)
..-++|.....|..|+.+.|+.+.+.... ...++..|+.|+|+.+.++.-... +-.|| |+.|.+.++... ....+
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccc
Confidence 44456655556677888888775433222 456788899999998877322222 33466 888888876532 12334
Q ss_pred ccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031 235 SKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (347)
Q Consensus 235 ~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L 311 (347)
...++|..|+.+.|. +..+. .....|+.|.+..+.. ..++-.+. .-.|..||++++.+.. ++--+..+..|
T Consensus 163 g~~~tl~~ld~s~ne--i~slpsql~~l~slr~l~vrRn~l-~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~L 236 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNE--IQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHL 236 (722)
T ss_pred ccchhHHHhhhhhhh--hhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh-CCceeeeecccCceee--cchhhhhhhhh
Confidence 456889999999885 33333 3455666666653222 11222222 3457888999888765 45556778999
Q ss_pred CEEeecCcCC
Q 019031 312 EDLFVTRCCL 321 (347)
Q Consensus 312 ~~L~l~~c~~ 321 (347)
++|.|.+++.
T Consensus 237 q~l~LenNPL 246 (722)
T KOG0532|consen 237 QVLQLENNPL 246 (722)
T ss_pred eeeeeccCCC
Confidence 9999998754
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.32 E-value=0.76 Score=21.52 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.4
Q ss_pred ccceEeccccc
Q 019031 331 QLKNLLFRSCK 341 (347)
Q Consensus 331 ~L~~L~l~~c~ 341 (347)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45666666655
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=80.07 E-value=0.23 Score=38.45 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=55.7
Q ss_pred ccEEEeeccCCCC----ccccccCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031 218 LEDLCFSNCWGLK----HLCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (347)
Q Consensus 218 Le~L~l~~c~~~~----~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 291 (347)
+-.++|++|.... ...+...-.|+..+++++. +-.+++.+..|-++.|.+..+... ..+..+..+|.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 3456667775421 0122233577778888774 222355666777777777633332 23334677888888888
Q ss_pred eccccCchHHHHHHccCCCCCEEeecC
Q 019031 292 VSVYFADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
..+.+.. ....+..+.++-.|+..+
T Consensus 108 ~~N~l~~--~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPLNA--EPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCcccc--chHHHHHHHhHHHhcCCC
Confidence 7777654 233333355555555554
No 85
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=78.03 E-value=0.53 Score=40.33 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=40.4
Q ss_pred ccccccCCchHHHHHHhcCCC-hhhhhhhcccchhh------HhhhccCceEEeeCCCc
Q 019031 16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKW------NQLYVSFPILDFDQNYF 67 (347)
Q Consensus 16 ~~d~is~LPddiL~~Ils~L~-~~~~~~~s~vskrW------~~l~~~~~~l~~~~~~~ 67 (347)
.+-.+.+||.+++..|+.+++ -+|+..++.|--.- +.+|+.+-..+|+...+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355788999999999999999 79999999873332 36788877766766554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.90 E-value=1.7 Score=41.31 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCC--CCccccc--cCCCceEEEccccc---------cchh
Q 019031 188 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLCVS--KASKLKIMEIRSFS---------EEIE 253 (347)
Q Consensus 188 ~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~--~~~~~~~--~~~~L~~L~l~~~~---------~~~~ 253 (347)
.++|.+.+++|+++++ .-+.+..+....|+|..|+|+++.. -....+. ....|++|.+.+++ ..+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4566677777777766 5566666666677777777766521 1111111 22456666666654 2223
Q ss_pred hhhhcCCCccEEEe
Q 019031 254 IVEISVPSLQQLTL 267 (347)
Q Consensus 254 ~~~~~~p~L~~L~l 267 (347)
.+....|.|..|+=
T Consensus 295 ~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 295 AIRELFPKLLRLDG 308 (585)
T ss_pred HHHHhcchheeecC
Confidence 33335566655543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.22 E-value=3 Score=22.35 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=17.2
Q ss_pred CCcCEEEeeeeeeChHHHHHHHh
Q 019031 191 CSLKKLTLERVCLDEQMVQKLAS 213 (347)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~i~~ 213 (347)
++|++|+|+++.+++++...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57888888888887777766543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=70.74 E-value=0.088 Score=50.05 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=85.8
Q ss_pred ccccccccccccEEEEeeeeccCCC------CcCCC-CCcCEEEeeeeeeChHH---HHHHHhcCCCccEEEeeccCCCC
Q 019031 161 LPQAIFSANSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWGLK 230 (347)
Q Consensus 161 l~~~~~~~~~L~~L~L~~~~l~~~~------~~~~~-~~L~~L~L~~~~~~~~~---l~~i~~~cp~Le~L~l~~c~~~~ 230 (347)
+...+....+|+.|+++++.+.+.+ ....- ..|++|.+..+..+..+ +.+.+..++.++.+++..|....
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 3333344678888888888766443 11111 35667777777763333 33334447778888887776521
Q ss_pred c--------cc--cccCCCceEEEccccc---cchhhhh---hcCCC-ccEEEeeeeCCCCC-c---eeeccCC-CCCcE
Q 019031 231 H--------LC--VSKASKLKIMEIRSFS---EEIEIVE---ISVPS-LQQLTLLFYGARRP-R---VVEVARS-PHLKK 288 (347)
Q Consensus 231 ~--------~~--~~~~~~L~~L~l~~~~---~~~~~~~---~~~p~-L~~L~l~~~~~~~~-~---~~~~~~~-~~L~~ 288 (347)
. +. +....+++.|.+.+|. .....+. -..+. +..|++..+...+. + ...+..+ +.+++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 1 01 0113467778887776 1111111 12233 44466553222211 0 0112333 56778
Q ss_pred EEeeccccCch---HHHHHHccCCCCCEEeecCcCC
Q 019031 289 LDLVSVYFADN---EFNHLISKFPSLEDLFVTRCCL 321 (347)
Q Consensus 289 L~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~ 321 (347)
+++..+.+++. .+.+.+..++.++.|.+...+.
T Consensus 267 l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 267 LDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 88877777653 3445556677788888877644
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=68.19 E-value=4.6 Score=29.18 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.6
Q ss_pred ccccCCchHHHHHHhcCCChhhhhh
Q 019031 18 DRISELPTFIIHHLMSYLSAKEVAR 42 (347)
Q Consensus 18 d~is~LPddiL~~Ils~L~~~~~~~ 42 (347)
..++.||.||-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999998753
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=67.62 E-value=3.1 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.163 Sum_probs=8.7
Q ss_pred cccEEEEeeeecc
Q 019031 170 SVTNLRLVWCRLE 182 (347)
Q Consensus 170 ~L~~L~L~~~~l~ 182 (347)
+|++|++++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777655
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=63.88 E-value=1.8 Score=33.70 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=34.7
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCC
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG 228 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~ 228 (347)
..|+..+|+++.+...+ ....||.++.|+|..+.+.+-..+ +...|.|+.|+++.+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 34555566666554332 345667777777777766444333 55667777777776654
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.08 E-value=11 Score=36.05 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=44.8
Q ss_pred CCCceEEEccccc----cchhhhhhcCCCccEEEeeee--CCCCCceeeccCCCCCcEEEeeccccCc------hHHHHH
Q 019031 237 ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFY--GARRPRVVEVARSPHLKKLDLVSVYFAD------NEFNHL 304 (347)
Q Consensus 237 ~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~------~~~~~~ 304 (347)
.|.+.++.++++. +.+..+...+|+|+.|+++.+ -......+.--+...|++|-+.|+.+.. .-+.++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 4666666666655 456666778888888888732 0101111111124567777777765432 223445
Q ss_pred HccCCCCCEEee
Q 019031 305 ISKFPSLEDLFV 316 (347)
Q Consensus 305 ~~~~~~L~~L~l 316 (347)
-..||.|..|+=
T Consensus 297 ~~~FPKL~~LDG 308 (585)
T KOG3763|consen 297 RELFPKLLRLDG 308 (585)
T ss_pred HHhcchheeecC
Confidence 556777766653
No 93
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=35.60 E-value=12 Score=33.48 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.2
Q ss_pred cCCchHHHHHHhcCCChhhhhhhcccchhhHhhhccCce
Q 019031 21 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI 59 (347)
Q Consensus 21 s~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~~~ 59 (347)
..+|++++..|++++..+++.++|.|++|-..+.+..|.
T Consensus 9 e~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 468999999999999999999999999999876655554
No 94
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=35.50 E-value=20 Score=30.15 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=8.4
Q ss_pred CCchHHHHHHhcC
Q 019031 22 ELPTFIIHHLMSY 34 (347)
Q Consensus 22 ~LPddiL~~Ils~ 34 (347)
.=||..|.+.|+-
T Consensus 30 rEPDSMLa~MF~~ 42 (302)
T KOG1665|consen 30 REPDSMLAAMFSG 42 (302)
T ss_pred cCchHHHHHHHcc
Confidence 3577777776654
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=35.27 E-value=38 Score=28.55 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCC
Q 019031 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG 228 (347)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~ 228 (347)
+|.+|+.-++++..++...+..+-.-|.++|--.|..|..
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNf 208 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNF 208 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcCC
Confidence 4566777777776666666666666677777777777754
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=34.99 E-value=30 Score=17.68 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=7.2
Q ss_pred CCCcEEEeeccccC
Q 019031 284 PHLKKLDLVSVYFA 297 (347)
Q Consensus 284 ~~L~~L~L~~~~~~ 297 (347)
++|+.|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555443
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=34.99 E-value=30 Score=17.68 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=7.2
Q ss_pred CCCcEEEeeccccC
Q 019031 284 PHLKKLDLVSVYFA 297 (347)
Q Consensus 284 ~~L~~L~L~~~~~~ 297 (347)
++|+.|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=23.17 E-value=65 Score=16.95 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=7.0
Q ss_pred CCCcEEEeecccc
Q 019031 284 PHLKKLDLVSVYF 296 (347)
Q Consensus 284 ~~L~~L~L~~~~~ 296 (347)
.+|+.|+++.+.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455566655544
Done!