Query 019031
Match_columns 347
No_of_seqs 165 out of 2010
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 1.2E-24 4.1E-29 196.5 10.6 280 16-339 5-302 (336)
2 2p1m_B Transport inhibitor res 99.9 1.4E-23 4.9E-28 203.6 8.8 216 16-248 2-245 (594)
3 3ogk_B Coronatine-insensitive 99.9 1.4E-22 4.8E-27 196.6 13.9 40 17-56 6-50 (592)
4 4fcg_A Uncharacterized protein 99.6 7.1E-15 2.4E-19 132.0 12.5 180 160-343 95-290 (328)
5 2ast_B S-phase kinase-associat 99.5 2.4E-14 8.4E-19 128.7 11.8 201 134-340 62-282 (336)
6 3ogk_B Coronatine-insensitive 99.4 5.6E-13 1.9E-17 129.0 11.4 111 110-227 111-231 (592)
7 4fcg_A Uncharacterized protein 99.4 2.9E-13 9.8E-18 121.5 8.5 192 141-338 103-309 (328)
8 1h6u_A Internalin H; cell adhe 99.4 3E-12 1E-16 113.8 13.7 186 142-341 41-228 (308)
9 4fmz_A Internalin; leucine ric 99.4 4.9E-12 1.7E-16 114.1 14.3 173 165-341 151-344 (347)
10 2z80_A TOLL-like receptor 2, v 99.4 1.7E-12 5.8E-17 117.6 9.2 178 168-346 123-317 (353)
11 1ozn_A Reticulon 4 receptor; N 99.4 1.4E-12 4.8E-17 114.5 8.3 174 166-341 53-236 (285)
12 4fmz_A Internalin; leucine ric 99.3 1.1E-11 3.7E-16 111.8 14.1 186 142-341 88-276 (347)
13 2p1m_B Transport inhibitor res 99.3 7.7E-13 2.6E-17 128.0 6.9 85 257-342 429-518 (594)
14 3rfs_A Internalin B, repeat mo 99.3 3.6E-12 1.2E-16 111.2 9.1 173 141-320 40-216 (272)
15 1ogq_A PGIP-2, polygalacturona 99.3 4.9E-12 1.7E-16 112.6 9.6 67 160-227 92-160 (313)
16 1h6u_A Internalin H; cell adhe 99.3 1.1E-11 3.6E-16 110.2 11.7 166 167-341 39-206 (308)
17 3zyi_A Leucine-rich repeat-con 99.3 5.8E-12 2E-16 118.0 9.5 194 142-342 99-302 (452)
18 1o6v_A Internalin A; bacterial 99.3 3.3E-11 1.1E-15 113.3 14.5 144 167-319 197-341 (466)
19 1o6v_A Internalin A; bacterial 99.3 2.4E-11 8.3E-16 114.2 13.4 168 165-341 217-386 (466)
20 3t6q_A CD180 antigen; protein- 99.3 3.7E-12 1.3E-16 123.7 7.7 61 281-341 446-511 (606)
21 3zyj_A Leucine-rich repeat-con 99.3 6.4E-12 2.2E-16 117.3 9.0 193 142-342 88-291 (440)
22 2ca6_A RAN GTPase-activating p 99.3 8E-12 2.7E-16 114.6 9.1 176 166-341 91-314 (386)
23 3rgz_A Protein brassinosteroid 99.3 6.5E-12 2.2E-16 125.4 9.2 152 142-296 100-259 (768)
24 1h6t_A Internalin B; cell adhe 99.3 1.7E-11 5.7E-16 108.0 10.8 165 142-320 46-211 (291)
25 2z66_A Variable lymphocyte rec 99.3 2.9E-12 1E-16 113.6 5.8 198 142-342 52-260 (306)
26 2o6q_A Variable lymphocyte rec 99.3 1.9E-11 6.3E-16 106.5 10.5 153 165-319 57-215 (270)
27 3rfs_A Internalin B, repeat mo 99.3 3E-12 1E-16 111.7 5.3 59 167-226 83-143 (272)
28 1ozn_A Reticulon 4 receptor; N 99.3 1.3E-11 4.3E-16 108.4 8.8 172 168-341 31-212 (285)
29 1ogq_A PGIP-2, polygalacturona 99.3 1.2E-11 4.2E-16 110.0 8.9 194 143-341 51-279 (313)
30 1xku_A Decorin; proteoglycan, 99.2 3.9E-11 1.3E-15 107.5 12.0 170 142-319 76-250 (330)
31 2id5_A Lingo-1, leucine rich r 99.2 3.1E-11 1.1E-15 113.7 11.4 196 142-342 104-332 (477)
32 3bz5_A Internalin-J, INLJ; leu 99.2 4.5E-11 1.5E-15 112.0 12.3 180 142-341 64-244 (457)
33 2z80_A TOLL-like receptor 2, v 99.2 4.5E-11 1.5E-15 108.2 11.9 173 142-320 52-233 (353)
34 2z66_A Variable lymphocyte rec 99.2 5.5E-12 1.9E-16 111.8 5.2 193 142-341 28-234 (306)
35 4glp_A Monocyte differentiatio 99.2 1.5E-11 5.2E-16 109.3 7.9 205 130-342 79-306 (310)
36 3v47_A TOLL-like receptor 5B a 99.2 6E-11 2.1E-15 111.0 12.4 109 235-344 296-409 (455)
37 2z63_A TOLL-like receptor 4, v 99.2 8.4E-12 2.9E-16 120.1 6.5 174 168-342 324-530 (570)
38 3vq2_A TLR4, TOLL-like recepto 99.2 8.4E-12 2.9E-16 121.1 6.5 174 167-341 326-532 (606)
39 1z7x_W Ribonuclease inhibitor; 99.2 6.2E-12 2.1E-16 117.9 5.3 199 140-341 26-267 (461)
40 4ezg_A Putative uncharacterize 99.2 5.1E-11 1.7E-15 98.6 10.2 144 168-319 43-191 (197)
41 3vq2_A TLR4, TOLL-like recepto 99.2 1.3E-11 4.4E-16 119.8 7.6 184 162-346 369-561 (606)
42 1m9s_A Internalin B; cell inva 99.2 3.7E-11 1.3E-15 116.2 10.6 166 142-321 43-209 (605)
43 3zyi_A Leucine-rich repeat-con 99.2 2.8E-11 9.7E-16 113.3 9.5 192 142-341 75-277 (452)
44 1h6t_A Internalin B; cell adhe 99.2 1.1E-10 3.7E-15 102.8 12.4 164 168-340 45-210 (291)
45 3v47_A TOLL-like receptor 5B a 99.2 3.7E-11 1.3E-15 112.4 9.8 83 142-227 79-165 (455)
46 3oja_A Leucine-rich immune mol 99.2 2.9E-11 1E-15 114.2 9.2 168 165-343 76-250 (487)
47 3o6n_A APL1; leucine-rich repe 99.2 3E-11 1E-15 110.8 9.0 10 259-268 247-256 (390)
48 1z7x_W Ribonuclease inhibitor; 99.2 2.3E-11 7.7E-16 114.0 8.2 60 282-341 254-324 (461)
49 3rgz_A Protein brassinosteroid 99.2 4.4E-11 1.5E-15 119.4 10.3 154 166-320 197-354 (768)
50 2ca6_A RAN GTPase-activating p 99.2 3.4E-11 1.2E-15 110.4 8.7 198 142-341 32-285 (386)
51 3zyj_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 112.5 8.7 192 142-341 64-266 (440)
52 3o6n_A APL1; leucine-rich repe 99.2 8.6E-11 2.9E-15 107.8 11.1 106 234-342 244-351 (390)
53 3o53_A Protein LRIM1, AGAP0063 99.2 4.5E-11 1.5E-15 106.6 9.0 186 142-343 58-250 (317)
54 1m9s_A Internalin B; cell inva 99.2 5.3E-11 1.8E-15 115.1 9.9 127 165-297 83-210 (605)
55 3bz5_A Internalin-J, INLJ; leu 99.2 1.5E-10 5E-15 108.5 12.4 158 142-319 85-243 (457)
56 3t6q_A CD180 antigen; protein- 99.2 3.7E-11 1.3E-15 116.6 8.3 153 189-343 398-560 (606)
57 1wwl_A Monocyte differentiatio 99.2 1.6E-11 5.4E-16 109.3 4.9 192 142-341 95-307 (312)
58 2id5_A Lingo-1, leucine rich r 99.2 8E-11 2.7E-15 110.9 10.0 174 142-320 128-331 (477)
59 3oja_B Anopheles plasmodium-re 99.2 6.7E-11 2.3E-15 114.7 9.4 36 168-203 122-159 (597)
60 1xku_A Decorin; proteoglycan, 99.1 9.5E-11 3.3E-15 105.0 9.4 170 142-320 100-274 (330)
61 2z62_A TOLL-like receptor 4, v 99.1 4E-11 1.4E-15 104.6 6.4 172 165-339 48-233 (276)
62 3oja_B Anopheles plasmodium-re 99.1 2.2E-10 7.4E-15 111.1 12.2 189 142-341 123-356 (597)
63 4ezg_A Putative uncharacterize 99.1 1.3E-10 4.4E-15 96.2 9.0 148 142-298 44-195 (197)
64 2z81_A CD282 antigen, TOLL-lik 99.1 3.2E-10 1.1E-14 108.7 12.7 191 142-346 310-513 (549)
65 3oja_A Leucine-rich immune mol 99.1 3.4E-11 1.2E-15 113.8 5.8 187 142-341 34-225 (487)
66 1ziw_A TOLL-like receptor 3; i 99.1 1.1E-10 3.6E-15 115.0 9.2 132 212-346 476-625 (680)
67 2o6q_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 100.7 9.1 170 169-341 37-216 (270)
68 2xwt_C Thyrotropin receptor; s 99.1 8E-11 2.7E-15 100.5 6.9 194 143-343 32-239 (239)
69 1wwl_A Monocyte differentiatio 99.1 3.4E-11 1.2E-15 107.1 4.7 174 167-341 93-285 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.1 3.4E-11 1.2E-15 107.4 4.5 198 131-341 21-225 (317)
71 2z81_A CD282 antigen, TOLL-lik 99.1 4.7E-10 1.6E-14 107.4 12.4 174 142-320 26-207 (549)
72 4eco_A Uncharacterized protein 99.1 4.3E-10 1.5E-14 109.8 11.2 149 189-342 431-599 (636)
73 2z63_A TOLL-like receptor 4, v 99.1 2.7E-10 9.2E-15 109.6 9.6 127 214-341 345-481 (570)
74 1p9a_G Platelet glycoprotein I 99.1 1.9E-10 6.6E-15 101.1 7.7 145 170-319 32-182 (290)
75 4eco_A Uncharacterized protein 99.1 1.7E-10 5.7E-15 112.7 8.0 133 161-296 239-389 (636)
76 1p9a_G Platelet glycoprotein I 99.1 2.1E-10 7.1E-15 100.9 7.9 174 165-341 6-183 (290)
77 2ft3_A Biglycan; proteoglycan, 99.1 1.7E-10 5.9E-15 103.4 6.5 194 142-342 78-306 (332)
78 3goz_A Leucine-rich repeat-con 99.0 1.1E-10 3.9E-15 106.0 5.2 196 143-341 52-295 (362)
79 4ecn_A Leucine-rich repeat pro 99.0 3.9E-10 1.3E-14 113.1 9.4 151 142-297 448-632 (876)
80 2z7x_B TOLL-like receptor 1, v 99.0 5.1E-10 1.8E-14 106.5 9.6 151 188-343 321-481 (520)
81 3m19_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 97.2 7.7 149 169-319 35-189 (251)
82 4ecn_A Leucine-rich repeat pro 99.0 1.3E-09 4.3E-14 109.4 12.3 147 191-342 673-839 (876)
83 3m19_A Variable lymphocyte rec 99.0 6E-10 2.1E-14 95.7 8.3 171 169-342 14-191 (251)
84 2z7x_B TOLL-like receptor 1, v 99.0 3.8E-09 1.3E-13 100.5 13.8 170 142-320 302-479 (520)
85 3j0a_A TOLL-like receptor 5; m 99.0 7.6E-10 2.6E-14 111.5 9.3 37 167-203 121-160 (844)
86 2z62_A TOLL-like receptor 4, v 99.0 1.7E-09 5.7E-14 94.3 10.0 171 169-341 28-211 (276)
87 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 3E-10 1E-14 72.5 3.6 40 16-55 5-44 (53)
88 3goz_A Leucine-rich repeat-con 99.0 1.5E-09 5E-14 98.6 9.6 197 142-341 22-264 (362)
89 1xeu_A Internalin C; cellular 99.0 9.1E-10 3.1E-14 95.4 7.8 142 168-319 40-182 (263)
90 2ell_A Acidic leucine-rich nuc 99.0 4.7E-10 1.6E-14 90.2 5.4 129 169-320 24-158 (168)
91 2ft3_A Biglycan; proteoglycan, 99.0 4.3E-10 1.5E-14 100.8 5.6 193 142-341 102-331 (332)
92 2xwt_C Thyrotropin receptor; s 99.0 1.7E-09 5.7E-14 92.2 8.9 169 142-320 55-237 (239)
93 4glp_A Monocyte differentiatio 99.0 4E-10 1.4E-14 100.0 5.2 172 168-341 90-283 (310)
94 1xeu_A Internalin C; cellular 98.9 3.1E-10 1.1E-14 98.3 3.8 163 169-341 19-183 (263)
95 1ziw_A TOLL-like receptor 3; i 98.9 5.2E-09 1.8E-13 102.9 12.3 150 169-319 25-181 (680)
96 2o6s_A Variable lymphocyte rec 98.9 1.3E-09 4.4E-14 90.8 6.8 142 169-319 28-175 (208)
97 2je0_A Acidic leucine-rich nuc 98.9 3E-10 1E-14 89.4 2.7 38 280-317 109-148 (149)
98 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.2E-08 4.2E-13 98.0 14.5 13 328-340 471-483 (562)
99 3j0a_A TOLL-like receptor 5; m 98.9 9.5E-10 3.3E-14 110.8 6.9 57 284-341 266-325 (844)
100 1jl5_A Outer protein YOPM; leu 98.9 1.2E-08 4.2E-13 95.3 12.8 137 166-319 150-287 (454)
101 2ra8_A Uncharacterized protein 98.9 4.3E-09 1.5E-13 95.2 8.8 134 207-341 163-318 (362)
102 2ell_A Acidic leucine-rich nuc 98.9 1E-08 3.5E-13 82.2 9.8 125 142-269 24-156 (168)
103 3g06_A SSPH2 (leucine-rich rep 98.9 3.6E-08 1.2E-12 95.5 14.8 171 142-340 61-231 (622)
104 3cvr_A Invasion plasmid antige 98.8 8.9E-09 3E-13 98.6 9.8 114 169-297 80-193 (571)
105 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 6.7E-09 2.3E-13 99.8 8.9 166 171-342 333-509 (562)
106 2je0_A Acidic leucine-rich nuc 98.8 8.6E-09 2.9E-13 80.9 7.7 124 142-268 17-148 (149)
107 3g06_A SSPH2 (leucine-rich rep 98.8 3.5E-08 1.2E-12 95.6 13.4 171 142-340 81-251 (622)
108 3e4g_A ATP synthase subunit S, 98.8 5.4E-09 1.9E-13 83.8 6.2 82 168-249 60-150 (176)
109 2o6s_A Variable lymphocyte rec 98.8 3E-09 1E-13 88.6 4.1 145 172-320 10-159 (208)
110 3e6j_A Variable lymphocyte rec 98.7 2.2E-08 7.7E-13 84.6 8.1 135 159-297 32-172 (229)
111 2ra8_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 85.2 13.6 204 94-305 92-328 (362)
112 3un9_A NLR family member X1; l 98.7 3.3E-09 1.1E-13 96.5 2.5 134 169-303 101-258 (372)
113 2v70_A SLIT-2, SLIT homolog 2 98.7 1.3E-08 4.3E-13 85.6 5.6 128 169-297 32-166 (220)
114 2v9t_B SLIT homolog 2 protein 98.7 3.6E-08 1.2E-12 82.9 7.3 127 169-297 32-165 (220)
115 1jl5_A Outer protein YOPM; leu 98.6 2.3E-07 7.8E-12 86.7 12.6 156 169-340 173-347 (454)
116 3e4g_A ATP synthase subunit S, 98.6 6.5E-08 2.2E-12 77.5 6.2 82 239-322 62-152 (176)
117 2v9t_B SLIT homolog 2 protein 98.6 5.4E-08 1.8E-12 81.8 5.9 145 172-319 14-162 (220)
118 4g8a_A TOLL-like receptor 4; l 98.6 6.1E-08 2.1E-12 94.0 7.0 154 187-341 416-578 (635)
119 2xot_A Amphoterin-induced prot 98.6 7.3E-08 2.5E-12 87.3 7.0 148 169-319 39-199 (361)
120 2v70_A SLIT-2, SLIT homolog 2 98.6 7.6E-08 2.6E-12 80.8 6.5 145 172-319 14-163 (220)
121 1a9n_A U2A', U2A'; complex (nu 98.6 6.1E-08 2.1E-12 78.3 5.4 133 166-321 16-152 (176)
122 1ds9_A Outer arm dynein; leuci 98.5 1E-08 3.5E-13 84.7 0.1 131 161-315 40-180 (198)
123 1ds9_A Outer arm dynein; leuci 98.5 1.7E-08 5.9E-13 83.3 1.4 99 237-337 69-181 (198)
124 3un9_A NLR family member X1; l 98.5 6.8E-08 2.3E-12 87.8 5.0 155 168-322 71-252 (372)
125 1a9n_A U2A', U2A'; complex (nu 98.5 1.5E-07 5.2E-12 76.0 6.2 84 258-341 62-151 (176)
126 2xot_A Amphoterin-induced prot 98.5 8.8E-08 3E-12 86.8 5.3 166 172-341 21-200 (361)
127 4g8a_A TOLL-like receptor 4; l 98.5 4.7E-08 1.6E-12 94.9 3.7 149 169-319 52-211 (635)
128 3e6j_A Variable lymphocyte rec 98.5 3.8E-07 1.3E-11 77.0 8.9 145 171-320 21-170 (229)
129 3cvr_A Invasion plasmid antige 98.5 2.2E-07 7.5E-12 89.0 7.8 157 142-323 80-244 (571)
130 4ay9_X Follicle-stimulating ho 98.4 3.5E-07 1.2E-11 82.4 7.9 54 280-337 198-253 (350)
131 4ay9_X Follicle-stimulating ho 98.4 2.7E-07 9.3E-12 83.1 5.2 195 142-345 30-238 (350)
132 1w8a_A SLIT protein; signaling 98.3 7.4E-07 2.5E-11 73.0 4.8 107 192-298 30-140 (192)
133 1dce_A Protein (RAB geranylger 98.2 1.1E-06 3.6E-11 84.4 5.4 120 191-315 441-566 (567)
134 2e31_A FBS1, F-box only protei 98.2 7.2E-07 2.5E-11 77.2 3.7 38 17-54 48-86 (297)
135 2o6r_A Variable lymphocyte rec 98.2 2.8E-06 9.4E-11 68.5 6.7 106 191-298 28-138 (177)
136 3l2o_B F-box only protein 4; s 98.2 4.2E-07 1.5E-11 77.8 1.5 34 19-52 4-37 (312)
137 2wfh_A SLIT homolog 2 protein 98.1 3.2E-06 1.1E-10 69.3 6.3 123 172-297 13-139 (193)
138 1dce_A Protein (RAB geranylger 98.1 6.6E-06 2.3E-10 78.9 9.0 118 217-336 442-566 (567)
139 2o6r_A Variable lymphocyte rec 98.0 1.3E-05 4.5E-10 64.4 7.9 122 193-320 9-135 (177)
140 3v7d_B Cell division control p 98.0 2.1E-06 7.1E-11 79.9 2.5 42 15-56 10-51 (464)
141 4b8c_D Glucose-repressible alc 98.0 3.6E-06 1.2E-10 83.2 4.2 110 186-299 219-331 (727)
142 3sb4_A Hypothetical leucine ri 98.0 9.8E-06 3.3E-10 72.2 6.3 97 237-336 225-327 (329)
143 2wfh_A SLIT homolog 2 protein 97.9 2.5E-05 8.7E-10 63.8 8.2 120 194-319 13-136 (193)
144 3sb4_A Hypothetical leucine ri 97.9 1.3E-05 4.4E-10 71.4 6.8 76 258-337 224-304 (329)
145 1io0_A Tropomodulin; LRR prote 97.9 2.7E-05 9.3E-10 63.2 7.6 62 259-320 92-162 (185)
146 1w8a_A SLIT protein; signaling 97.9 1.8E-05 6.1E-10 64.6 6.4 103 216-319 29-136 (192)
147 4b8c_D Glucose-repressible alc 97.9 8E-06 2.7E-10 80.7 4.8 108 162-272 217-328 (727)
148 2ovr_B FBW7, F-BOX/WD repeat p 97.8 1E-05 3.5E-10 74.8 4.1 41 13-53 12-52 (445)
149 1p22_A F-BOX/WD-repeat protein 97.7 7.5E-06 2.5E-10 75.6 1.7 38 15-52 6-47 (435)
150 1io0_A Tropomodulin; LRR prote 97.6 6.2E-05 2.1E-09 61.0 4.8 37 190-226 64-103 (185)
151 4fdw_A Leucine rich hypothetic 97.5 0.00028 9.7E-09 64.5 8.9 55 280-339 296-354 (401)
152 3g39_A Variable lymphocyte rec 97.4 0.00015 5E-09 57.9 5.3 80 169-249 30-113 (170)
153 2r9u_A Variable lymphocyte rec 97.4 0.00018 6.2E-09 57.6 5.5 80 169-249 33-116 (174)
154 3g39_A Variable lymphocyte rec 97.4 0.0002 6.9E-09 57.1 5.3 100 218-319 11-112 (170)
155 2r9u_A Variable lymphocyte rec 97.3 0.00038 1.3E-08 55.7 5.9 100 219-320 15-116 (174)
156 4fdw_A Leucine rich hypothetic 97.3 0.00031 1.1E-08 64.2 5.9 37 280-319 319-355 (401)
157 2ifg_A High affinity nerve gro 96.5 0.0025 8.5E-08 56.8 4.9 88 158-249 21-114 (347)
158 3rw6_A Nuclear RNA export fact 96.4 0.0019 6.5E-08 55.3 3.4 37 190-226 169-206 (267)
159 3rw6_A Nuclear RNA export fact 96.2 0.0058 2E-07 52.3 5.6 32 285-316 221-258 (267)
160 2ifg_A High affinity nerve gro 96.2 0.0085 2.9E-07 53.2 6.8 73 174-248 13-90 (347)
161 4fs7_A Uncharacterized protein 95.4 0.027 9.2E-07 51.0 6.9 54 280-337 293-350 (394)
162 4fs7_A Uncharacterized protein 94.8 0.052 1.8E-06 49.1 6.9 146 165-318 226-375 (394)
163 4gt6_A Cell surface protein; l 94.6 0.065 2.2E-06 48.5 6.9 121 212-337 261-385 (394)
164 1pgv_A TMD-1, tropomodulin TMD 94.2 0.1 3.5E-06 42.2 6.5 114 206-319 31-167 (197)
165 4gt6_A Cell surface protein; l 93.9 0.16 5.6E-06 45.8 8.1 123 187-318 261-387 (394)
166 1pgv_A TMD-1, tropomodulin TMD 91.7 0.78 2.7E-05 37.0 8.2 16 281-296 154-169 (197)
167 4h09_A Hypothetical leucine ri 88.4 1.1 3.6E-05 40.0 7.2 102 212-317 236-341 (379)
168 4h09_A Hypothetical leucine ri 87.1 0.85 2.9E-05 40.6 5.7 101 235-337 237-340 (379)
169 3rfe_A Platelet glycoprotein I 64.9 2.9 9.8E-05 31.0 1.8 35 169-203 31-67 (130)
170 3rfe_A Platelet glycoprotein I 45.4 10 0.00035 27.9 2.0 48 261-308 32-83 (130)
171 2lz0_A Uncharacterized protein 35.5 23 0.0008 24.6 2.5 36 212-247 16-52 (100)
172 2kwv_A RAD30 homolog B, DNA po 28.2 36 0.0012 19.8 1.9 19 16-34 17-35 (48)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.2e-24 Score=196.46 Aligned_cols=280 Identities=20% Similarity=0.265 Sum_probs=182.2
Q ss_pred ccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhcc---CceEEeeCCCcCCCCCCCCCCccccccccchhhhhh
Q 019031 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV 92 (347)
Q Consensus 16 ~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (347)
+...++.||||++.+||+||+.+|+++++.|||+|+++... ...+++....+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------ 60 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------ 60 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence 35678999999999999999999999999999999998532 223344333221
Q ss_pred HhHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHHHHcCceEEEeeeecCCccccccccccccccccc
Q 019031 93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT 172 (347)
Q Consensus 93 ~~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~ 172 (347)
...+.... ...++.+.+...... ..... .....++++|+ +..+......++..+..+++|+
T Consensus 61 ---~~~~~~~~------~~~l~~L~l~~n~l~--~~~~~------~~~~~~L~~L~--L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 61 ---PDVTGRLL------SQGVIAFRCPRSFMD--QPLAE------HFSPFRVQHMD--LSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp ---HHHHHHHH------HTTCSEEECTTCEEC--SCCCS------CCCCBCCCEEE--CTTCEECHHHHHHHHTTBCCCS
T ss_pred ---HHHHHhhh------hccceEEEcCCcccc--ccchh------hccCCCCCEEE--ccCCCcCHHHHHHHHhhCCCCC
Confidence 11222222 124455543311100 00000 00125888888 6544322233555666789999
Q ss_pred EEEEeeeeccCCC--CcCCCCCcCEEEeeee-eeChHHHHHHHhcCCCccEEEeeccCCCCccc----cccCC-CceEEE
Q 019031 173 NLRLVWCRLEQPF--DSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----VSKAS-KLKIME 244 (347)
Q Consensus 173 ~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~----~~~~~-~L~~L~ 244 (347)
+|++++|.+.... ....+++|++|+++++ .+++..+..++.+||+|++|++.+|..+.... +..++ +|+.|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999998765322 3456899999999999 56877888888999999999999995555321 34578 999999
Q ss_pred ccccc-----cchhhhhhcCCCccEEEeeeeC-CCCCceeeccCCCCCcEEEeecc-ccCchHHHHHHccCCCCCEEeec
Q 019031 245 IRSFS-----EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~ 317 (347)
+++|. ..+......+|+|++|+++++. ........+..+++|+.|+++++ .+.+..+ ..+..+++|+.|+++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF 280 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence 99983 2333444578999999998665 33333345678899999999777 4555544 334679999999999
Q ss_pred CcCCchhhhccCcccceEeccc
Q 019031 318 RCCLPGKIKISSNQLKNLLFRS 339 (347)
Q Consensus 318 ~c~~~~~~~~~~~~L~~L~l~~ 339 (347)
+|-..+.+......+++|++.+
T Consensus 281 ~~i~~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 281 GIVPDGTLQLLKEALPHLQINC 302 (336)
T ss_dssp TSSCTTCHHHHHHHSTTSEESC
T ss_pred CccCHHHHHHHHhhCcceEEec
Confidence 9822112222223466666643
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.4e-23 Score=203.59 Aligned_cols=216 Identities=14% Similarity=0.174 Sum_probs=100.4
Q ss_pred ccccccCCchHHHHHHhcCCC-hhhhhhhcccchhhHhhhc-cCceEEeeCCCcCCCCC----CCCCCcccccc------
Q 019031 16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYV-SFPILDFDQNYFFPGAS----RLDYGSFCVRK------ 83 (347)
Q Consensus 16 ~~d~is~LPddiL~~Ils~L~-~~~~~~~s~vskrW~~l~~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~------ 83 (347)
+.|.++.|||||+.+||+||+ .+|++++++|||||+++.. ....+.+.......... .+.........
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 359999999999999999999 9999999999999998721 11222222211000000 00000000000
Q ss_pred ---ccchhhhhhHhHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHH--HHcCceEEEeeeecCC-cc
Q 019031 84 ---QNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDE-NT 157 (347)
Q Consensus 84 ---~~~~~~~~~~~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~--~~~~l~~L~~~l~~~~-~~ 157 (347)
...++... +...+.... .....++.+.+.... ... . .+... ..+++++|+ +..+. ..
T Consensus 82 ~~l~~~~~~~~---~~~~l~~l~----~~~~~L~~L~L~~~~----~~~-~---~~~~l~~~~~~L~~L~--L~~~~~~~ 144 (594)
T 2p1m_B 82 FNLVPDGWGGY---VYPWIEAMS----SSYTWLEEIRLKRMV----VTD-D---CLELIAKSFKNFKVLV--LSSCEGFS 144 (594)
T ss_dssp GTCSCTTSCCB---CHHHHHHHH----HHCTTCCEEEEESCB----CCH-H---HHHHHHHHCTTCCEEE--EESCEEEE
T ss_pred cccccccccch---hhHHHHHHH----HhCCCCCeEEeeCcE----EcH-H---HHHHHHHhCCCCcEEe--CCCcCCCC
Confidence 00000000 011111111 123445555544221 000 1 11111 124666666 43321 11
Q ss_pred cccccccccccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeee--eChHHHHHHHhcCCCccEEEeeccCCC
Q 019031 158 VYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGL 229 (347)
Q Consensus 158 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~cp~Le~L~l~~c~~~ 229 (347)
...++.....|++|++|++++|.+.... ....+++|++|+++++. ++...+..++.+||+|+.|++.+|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 1123333335677777777776644321 23356777777777775 466677777777777888777777443
Q ss_pred Cccc--cccCCCceEEEcccc
Q 019031 230 KHLC--VSKASKLKIMEIRSF 248 (347)
Q Consensus 230 ~~~~--~~~~~~L~~L~l~~~ 248 (347)
..+. +..+++|+.|.+..+
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHhcCCcceEcccccc
Confidence 3211 123456666654433
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.4e-22 Score=196.58 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=32.4
Q ss_pred ccccc----CCchHHHHHHhcCC-ChhhhhhhcccchhhHhhhcc
Q 019031 17 MDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVS 56 (347)
Q Consensus 17 ~d~is----~LPddiL~~Ils~L-~~~~~~~~s~vskrW~~l~~~ 56 (347)
.|+++ .||||++.+||+|| +.+|++++++|||||++++..
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence 45565 89999999999999 799999999999999988533
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=7.1e-15 Score=131.98 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=82.2
Q ss_pred cccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc-----
Q 019031 160 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----- 233 (347)
Q Consensus 160 ~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~----- 233 (347)
.+|..+..+++|++|+|+++.+...+ ....+++|++|+|+++.+. .+..-+..+++|+.|++.+|.....+.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 44444555555666666555544221 2345555666666555543 112224455556666665554333221
Q ss_pred ------cccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHc
Q 019031 234 ------VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS 306 (347)
Q Consensus 234 ------~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 306 (347)
+.++++|+.|+++++. ..+......+++|++|+++++.... ....+..+++|+.|+++++.+... +...+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTT
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhc
Confidence 1124555555555553 1111112245555555555333321 111244555555555555443322 122234
Q ss_pred cCCCCCEEeecCcCCchhh---hccCcccceEecccccCc
Q 019031 307 KFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYL 343 (347)
Q Consensus 307 ~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~l 343 (347)
.+++|+.|++++|.....+ ...+++|+.|+|++|..+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 4555555555555333322 123445555555555443
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=2.4e-14 Score=128.69 Aligned_cols=201 Identities=20% Similarity=0.204 Sum_probs=142.6
Q ss_pred HHHHHHHHcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC---CCcCCCCCcCEEEeeeeeeChHHHHH
Q 019031 134 RWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP---FDSIMLCSLKKLTLERVCLDEQMVQK 210 (347)
Q Consensus 134 ~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~ 210 (347)
..+......+++.++ +... .....+..++.+++|++|++++|.+... .....+++|++|+|+++.+++.....
T Consensus 62 ~~~~~~~~~~l~~L~--l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 137 (336)
T 2ast_B 62 DVTGRLLSQGVIAFR--CPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137 (336)
T ss_dssp HHHHHHHHTTCSEEE--CTTC--EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred HHHHhhhhccceEEE--cCCc--cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH
Confidence 445555567899998 5432 1222233456789999999999886532 14578899999999999887666665
Q ss_pred HHhcCCCccEEEeeccCCCCcc----ccccCCCceEEEcccc-c-c--chhhhhhcCC-CccEEEeeeeC--CC-CCcee
Q 019031 211 LASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRVV 278 (347)
Q Consensus 211 i~~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~-~-~--~~~~~~~~~p-~L~~L~l~~~~--~~-~~~~~ 278 (347)
+..+++|+.|++.+|..+... .+.++++|+.|++++| . . .+......+| +|++|+++++. .. .....
T Consensus 138 -l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 138 -LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp -HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred -HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 566999999999999655532 1345799999999998 4 1 2344455788 99999998552 22 12223
Q ss_pred eccCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcccceEecccc
Q 019031 279 EVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC 340 (347)
Q Consensus 279 ~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~c 340 (347)
.+..+++|+.|+++++. +++..+. .+..+++|+.|++++|..... ....+++|+.|++.+|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 45678999999998887 6655454 456789999999999853322 2346789999999988
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=5.6e-13 Score=128.99 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=75.9
Q ss_pred CcccceEEEEEecCCCCCChhHHHHHHHHHHHcCceEEEeeeecCCc-ccccccccccccccccEEEEeeeeccCCC---
Q 019031 110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLEQPF--- 185 (347)
Q Consensus 110 ~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~L~~~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--- 185 (347)
...++.+.+.... .......|+......++++|+ +..+.. ....++.....|++|++|+|++|.+....
T Consensus 111 ~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 111 LRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp CTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 4678888876331 122444555555445699999 654331 22233333346899999999999865432
Q ss_pred ---CcCCCCCcCEEEeeeeeeC---hHHHHHHHhcCCCccEEEeeccC
Q 019031 186 ---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCW 227 (347)
Q Consensus 186 ---~~~~~~~L~~L~L~~~~~~---~~~l~~i~~~cp~Le~L~l~~c~ 227 (347)
....+++|++|+++++.++ ...+..++.+||+|+.|++.+|.
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2346899999999888774 67788888899999999998874
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.42 E-value=2.9e-13 Score=121.49 Aligned_cols=192 Identities=17% Similarity=0.110 Sum_probs=139.1
Q ss_pred HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHH--------
Q 019031 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKL-------- 211 (347)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i-------- 211 (347)
..+++.|+ +..+... .+|..+..+++|++|++++|.+...+ ....+++|++|+++++......-..+
T Consensus 103 l~~L~~L~--L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 103 LSHLQHMT--IDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GTTCSEEE--EESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCCCEEE--CCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 36899999 6543332 67777888999999999999876433 46789999999999986522111111
Q ss_pred HhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcE
Q 019031 212 ASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKK 288 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 288 (347)
+.++++|+.|++.+|.. ..+ .+..+++|+.|++++|. ..+......+++|+.|+++++......+..++.+++|+.
T Consensus 179 ~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 23599999999999853 232 35568999999999986 333333347899999999966665555566788999999
Q ss_pred EEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhc---cCcccceEecc
Q 019031 289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFR 338 (347)
Q Consensus 289 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~ 338 (347)
|+++++.+... +...+..+++|+.|++++|.....+.. ..++|+.+.+.
T Consensus 258 L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 258 LILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EECCCCCchhh-cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99988766543 233467899999999999976665533 45667777654
No 8
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=3e-12 Score=113.78 Aligned_cols=186 Identities=13% Similarity=0.094 Sum_probs=111.4
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+... .++ .+..+++|++|++++|.+........+++|++|+++++.+..- . -+..+++|+.|
T Consensus 41 ~~L~~L~--l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLS--AFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred CCcCEEE--eeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence 4677777 5432221 222 3455677788888777765443456777788888877776322 1 25667778888
Q ss_pred EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
++.+|.......+..+++|+.|+++++. ..+.. ...+++|+.|+++++....... +..+++|+.|+++++.+++..
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 7777754332235556777777777775 12221 2356777777777544433222 567777777777777666532
Q ss_pred HHHHHccCCCCCEEeecCcCCchh-hhccCcccceEeccccc
Q 019031 301 FNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~c~~~~~-~~~~~~~L~~L~l~~c~ 341 (347)
. +..+++|+.|++++|..... ....+++|+.|++++++
T Consensus 190 ~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 P---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp G---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred h---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 1 55677777777777643221 12355677777776554
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=4.9e-12 Score=114.13 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=86.5
Q ss_pred ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeCh-HHHH------------------HHHhcCCCccEEEeec
Q 019031 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDE-QMVQ------------------KLASECPLLEDLCFSN 225 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-~~l~------------------~i~~~cp~Le~L~l~~ 225 (347)
+..+++|++|++++|.+........+++|++|+++++.+.. ..+. ..+..+++|+.|++.+
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 34455666666666554433234455555555555554421 1100 0034455555555555
Q ss_pred cCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHH
Q 019031 226 CWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL 304 (347)
Q Consensus 226 c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 304 (347)
|.......+..+++|+.|++++|. ..+ .....+++|++|+++++..... ..+..+++|+.|+++++.+.+... ..
T Consensus 231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~ 306 (347)
T 4fmz_A 231 NKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EV 306 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HH
T ss_pred CccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hH
Confidence 533222223445566666666554 111 1122456666666664433221 124556677777776666654332 34
Q ss_pred HccCCCCCEEeecCcCCchhh-hccCcccceEeccccc
Q 019031 305 ISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK 341 (347)
Q Consensus 305 ~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~ 341 (347)
+..+++|+.|++++|+..... ...+++|+.|+++++.
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred hhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 455677777777776432221 2355677777776664
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=117.59 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=85.6
Q ss_pred cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeee-eChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCce
Q 019031 168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLK 241 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~ 241 (347)
+++|++|+++++.+.... ....+++|++|+++++. ++.- ....+.++++|+.|++.+|..... ..+..+++|+
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 445555555554433211 13344555555555442 1110 011133445555555554432111 1223345555
Q ss_pred EEEccccc-cchhhh-hhcCCCccEEEeeeeCCCCCcee---eccCCCCCcEEEeeccccCchH---HHHHHccCCCCCE
Q 019031 242 IMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLED 313 (347)
Q Consensus 242 ~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~ 313 (347)
.|++.++. ..+... ...+++|+.|+++++........ .....+.++.+++....+.+.. +...+..+++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 55555553 111111 11355666666654333211100 1123455666666666555543 3344677899999
Q ss_pred EeecCcCCch---hhhccCcccceEecccccCcccc
Q 019031 314 LFVTRCCLPG---KIKISSNQLKNLLFRSCKYLKLC 346 (347)
Q Consensus 314 L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~ 346 (347)
|+++++.... .+...+++|+.|++++++....|
T Consensus 282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 9999874321 22346789999999888755443
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.35 E-value=1.4e-12 Score=114.50 Aligned_cols=174 Identities=15% Similarity=0.034 Sum_probs=78.9
Q ss_pred cccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeee-eChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCc
Q 019031 166 FSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL 240 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L 240 (347)
..+++|++|+++++.+... .....+++|++|+++++. +..-. ...+..+++|+.|++.+|..... ..+..+++|
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 3455666666665543321 133455666666666554 31110 11134456666666655542211 113344566
Q ss_pred eEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031 241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
+.|+++++. ..+.. ....+++|++|+++++.........+..+++|+.|++.++.+.... ...+..+++|+.|++++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCC
Confidence 666666553 11111 1124556666666533332111112344556666666555554321 22334455666666665
Q ss_pred cCCch---hhhccCcccceEeccccc
Q 019031 319 CCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 319 c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
+.... .....+++|+.|++++++
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcCCcCCHHHcccCcccCEEeccCCC
Confidence 52211 112344556666655544
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.34 E-value=1.1e-11 Score=111.82 Aligned_cols=186 Identities=16% Similarity=0.059 Sum_probs=118.8
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLED 220 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~ 220 (347)
.++++|+ +..+... .++ .+..+++|++|++++|.+........+++|++|+++++.. ... .. +..+++|+.
T Consensus 88 ~~L~~L~--L~~n~i~--~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~ 159 (347)
T 4fmz_A 88 VKLTNLY--IGTNKIT--DIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNY 159 (347)
T ss_dssp TTCCEEE--CCSSCCC--CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCE
T ss_pred CcCCEEE--ccCCccc--Cch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccc--cc-hhhCCCCcE
Confidence 5677777 4432221 122 3455677777777777655443456677777777777744 211 11 566777777
Q ss_pred EEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCch
Q 019031 221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (347)
Q Consensus 221 L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 299 (347)
|++.+|.......+..+++|+.|++++|. ..+.. ...+++|+.+.++.+....... +..+++|+.|+++++.++..
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence 77777754333335567788888888775 22222 3367788888887544433222 57788999999988887763
Q ss_pred HHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEeccccc
Q 019031 300 EFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 300 ~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~ 341 (347)
.. +..+++|+.|++++|.... .....+++|+.|++++|.
T Consensus 237 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 237 SP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp GG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence 22 6778999999999874322 223466789999988874
No 13
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.34 E-value=7.7e-13 Score=128.02 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred hcCCCccEEEeeeeCCCCCceeecc-CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcc
Q 019031 257 ISVPSLQQLTLLFYGARRPRVVEVA-RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQ 331 (347)
Q Consensus 257 ~~~p~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~ 331 (347)
..+++|++|++++ .........+. .+++|+.|+++++.+++..+..+...+++|+.|++++|..... +...+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3556666666652 11111111122 3788888888888888877777777889999999998865322 2345788
Q ss_pred cceEecccccC
Q 019031 332 LKNLLFRSCKY 342 (347)
Q Consensus 332 L~~L~l~~c~~ 342 (347)
|+.|++++|+.
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 99999988875
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=3.6e-12 Score=111.17 Aligned_cols=173 Identities=15% Similarity=0.088 Sum_probs=116.2
Q ss_pred HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccE
Q 019031 141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED 220 (347)
Q Consensus 141 ~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~ 220 (347)
..++++|. +...... . ...+..+++|++|++++|.+........+++|++|+++++.++.- ....+.++++|+.
T Consensus 40 l~~L~~L~--l~~~~i~--~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQII--ANNSDIK--S-VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEE--CTTSCCC--C-CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred ccceeeee--eCCCCcc--c-ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCE
Confidence 36788888 5433221 2 223556788999999998876554567888999999998877421 1223567899999
Q ss_pred EEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 221 LCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 221 L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
|++.+|..... -.+..+++|+.|++++|. ..+.. ....+++|+.|+++.+.........++.+++|+.|++.++.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99988864321 124567889999999885 22221 123678899999986555433333356788999999988877
Q ss_pred CchHHHHHHccCCCCCEEeecCcC
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+.. ....+..+++|+.|++++++
T Consensus 194 ~~~-~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 194 KSV-PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred Ccc-CHHHHhCCcCCCEEEccCCC
Confidence 652 22345678899999998763
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.31 E-value=4.9e-12 Score=112.64 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=33.0
Q ss_pred cccccccccccccEEEEeeeeccC--CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC
Q 019031 160 TLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW 227 (347)
Q Consensus 160 ~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~ 227 (347)
.+|..+..+++|++|+++++.+.. +.....+++|++|+++++.+... +...+..+++|+.|++.+|.
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSC
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCc
Confidence 344444555566666666655431 11344555666666665555211 11123455666666665554
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=1.1e-11 Score=110.21 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=126.6
Q ss_pred ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcc
Q 019031 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~ 246 (347)
.+++|++|++.++.+........+++|++|+|+++.+.+-. . +..+++|+.|++.+|....--.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 46789999999998765545678999999999999883322 2 78899999999999864333345668999999999
Q ss_pred ccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh-
Q 019031 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK- 324 (347)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~- 324 (347)
+|. ..+.. ...+++|++|.++++....... +..+++|+.|+++++.+++.. . +..+++|+.|+++++.....
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCcCh
Confidence 987 22222 3478999999999655543322 678999999999999887632 2 67899999999999843221
Q ss_pred hhccCcccceEeccccc
Q 019031 325 IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 325 ~~~~~~~L~~L~l~~c~ 341 (347)
.....++|+.|+++++.
T Consensus 190 ~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp GGGGCTTCCEEECTTSC
T ss_pred hhcCCCCCCEEEccCCc
Confidence 14567899999998875
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=5.8e-12 Score=118.00 Aligned_cols=194 Identities=16% Similarity=0.062 Sum_probs=117.9
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.+++.|+ +..+... ...+..+..+++|++|+|++|.+.... ....+++|++|+|+++.+..-. ...+..+++|+
T Consensus 99 ~~L~~L~--Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 174 (452)
T 3zyi_A 99 HHLEVLQ--LGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM 174 (452)
T ss_dssp TTCCEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEE--CCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence 4666666 4332111 111223344677777777777654332 2456777777777777663111 12355677788
Q ss_pred EEEeeccCCCCccc---cccCCCceEEEccccccchhhh--hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031 220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (347)
Q Consensus 220 ~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 294 (347)
.|++.+|..+..+. +.++++|+.|+++++. +..+ ...+++|+.|+++++.........+..+++|+.|++.++
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 88887766655433 3456788888888775 2222 225678888888755443333345677888888888877
Q ss_pred ccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031 295 YFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~ 342 (347)
.+.... ...+..+++|+.|+++++.... ......++|+.|+|.+++.
T Consensus 253 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 QVSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 766432 2345678888888888873322 2234567888888877653
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=3.3e-11 Score=113.27 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=60.3
Q ss_pred ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcc
Q 019031 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR 246 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~ 246 (347)
.+++|++|++++|.+........+++|++|+++++.+.+- ..+..+++|+.|++.+|.......+..+++|+.|+++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 3445555555554433322233455555555555544211 1134455555555555533222223344555555555
Q ss_pred ccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++. ..... ...+++|+.|+++++....... ++.+++|+.|+++++.+++... +..+++|+.|++++|
T Consensus 274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 274 ANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS
T ss_pred CCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC
Confidence 543 11111 1234455555554332221111 3344455555554444433211 234444444444444
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=2.4e-11 Score=114.19 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=126.0
Q ss_pred ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
+..+++|+.|++++|.+........+++|++|+++++.+..... +..+++|+.|++.+|.......+..+++|+.|+
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLE 293 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence 44578999999999987765456788999999999998832221 678999999999988654433466789999999
Q ss_pred ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (347)
Q Consensus 245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 323 (347)
+++|. ..+.. ...+|+|+.|+++++....... +..+++|+.|++.++.+++. ..+..+++|+.|++++|....
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCc
Confidence 99986 22222 3478999999998665544333 57889999999998888764 346678999999999885433
Q ss_pred hh-hccCcccceEeccccc
Q 019031 324 KI-KISSNQLKNLLFRSCK 341 (347)
Q Consensus 324 ~~-~~~~~~L~~L~l~~c~ 341 (347)
.. ...+++|+.|++.+|.
T Consensus 368 ~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 368 LTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CGGGTTCTTCCEEECCCEE
T ss_pred cchhhcCCCCCEEeccCCc
Confidence 22 3466889999988775
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.28 E-value=3.7e-12 Score=123.65 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=26.9
Q ss_pred cCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeecCcCCchh---hhccCcccceEeccccc
Q 019031 281 ARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 281 ~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~ 341 (347)
..+++|+.|+++++.+.+..+ ...+..+++|+.|++++|..... ....+++|+.|+++++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 344555555554444432111 01234455555555555532211 12234556666665543
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=6.4e-12 Score=117.28 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=127.4
Q ss_pred cCceEEEeeeecCCccccccc-ccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
.+++.|+ +..+.. ..++ ..+..+++|++|+|++|.+.... ....+++|++|+|+++.+..-. ...+..+++|
T Consensus 88 ~~L~~L~--Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L 162 (440)
T 3zyj_A 88 RHLEILQ--LSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSL 162 (440)
T ss_dssp SSCCEEE--CCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTC
T ss_pred CCCCEEE--CCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCccc
Confidence 4677777 543221 1222 33445788888888888765433 3567888899988888763211 1235678889
Q ss_pred cEEEeeccCCCCccc---cccCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 219 e~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
+.|++.+|..+..+. +.++++|+.|+++++. +..+. ..+++|+.|+++++.........+..+++|+.|++.+
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCc--CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 999988876655433 4467889999998885 22222 3677889999885544333333567788999999988
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~ 342 (347)
+.++... ...+..+++|+.|+++++.... ......++|+.|+|++.+.
T Consensus 241 n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 241 SQIQVIE-RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCCEEC-TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CceeEEC-hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 8776532 2345678899999998874322 2234567899999877654
No 22
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=8e-12 Score=114.56 Aligned_cols=176 Identities=14% Similarity=0.057 Sum_probs=96.0
Q ss_pred cccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeeeeChHHH---HHHHhcC---------CCccEEEeeccC
Q 019031 166 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMV---QKLASEC---------PLLEDLCFSNCW 227 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~~~~~~l---~~i~~~c---------p~Le~L~l~~c~ 227 (347)
..+++|++|+|++|.+.... ....+++|++|+|+++.+++... ...+..+ ++|+.|++.+|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 34667777777777665421 23456777777777776643332 2223333 677777777665
Q ss_pred CC-Ccc-----ccccCCCceEEEccccc-c--c---hhh-hhhcCCCccEEEeeeeCCC----CCceeeccCCCCCcEEE
Q 019031 228 GL-KHL-----CVSKASKLKIMEIRSFS-E--E---IEI-VEISVPSLQQLTLLFYGAR----RPRVVEVARSPHLKKLD 290 (347)
Q Consensus 228 ~~-~~~-----~~~~~~~L~~L~l~~~~-~--~---~~~-~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~ 290 (347)
.. ..+ .+..+++|+.|.+++|. . + +.. ....+++|+.|+++++... ......+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 32 111 12245677777777765 1 1 111 2235667777777644432 11222345667777777
Q ss_pred eeccccCchHHHH---HHc--cCCCCCEEeecCcCCch----hhh----ccCcccceEeccccc
Q 019031 291 LVSVYFADNEFNH---LIS--KFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCK 341 (347)
Q Consensus 291 L~~~~~~~~~~~~---~~~--~~~~L~~L~l~~c~~~~----~~~----~~~~~L~~L~l~~c~ 341 (347)
|+++.+++..... .+. .+++|+.|++++|.... .+. ..+++|+.|+++++.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 7777666543332 222 26777777777764333 121 235677777776665
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=6.5e-12 Score=125.37 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=88.6
Q ss_pred cCceEEEeeeecCCcccccccc--cccccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHH--HHHhc
Q 019031 142 NGVRELDFENITDENTVYTLPQ--AIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ--KLASE 214 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~--~i~~~ 214 (347)
.++++|+ +..+. -...+|. .+..+++|++|++++|.+.... ....+++|++|+|+++.+++.... ..+.+
T Consensus 100 ~~L~~L~--Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLD--LSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEE--CCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCEEE--CCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 4788888 54322 2223444 6677889999999988765332 226788899999988877322222 23567
Q ss_pred CCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 215 cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
+++|+.|++.+|..........+++|+.|++++|. .........+++|++|+++++.........+..+++|+.|++++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 88888888877754333334455666666666664 11111123456666666664444333333345555555555554
Q ss_pred ccc
Q 019031 294 VYF 296 (347)
Q Consensus 294 ~~~ 296 (347)
+.+
T Consensus 257 n~l 259 (768)
T 3rgz_A 257 NQF 259 (768)
T ss_dssp SCC
T ss_pred Ccc
Confidence 443
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=1.7e-11 Score=108.02 Aligned_cols=165 Identities=16% Similarity=0.063 Sum_probs=121.5
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+... .++ .+..+++|++|++++|.+........+++|++|+++++.+..- .. +..+++|+.|
T Consensus 46 ~~L~~L~--l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L 117 (291)
T 1h6t_A 46 NSIDQII--ANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSL 117 (291)
T ss_dssp HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEE
T ss_pred CcccEEE--ccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEE
Confidence 5789888 6443222 222 3566899999999999876554477899999999999988432 22 6789999999
Q ss_pred EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
++.+|....--.+..+++|+.|+++++. ..+ .....+++|+.|+++.+....... +..+++|+.|+++++.+++-
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l- 193 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 193 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence 9998864333345567899999999886 222 223478899999998665544332 67899999999998888763
Q ss_pred HHHHHccCCCCCEEeecCcC
Q 019031 301 FNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~c~ 320 (347)
. .+..+++|+.|++++++
T Consensus 194 -~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEE
T ss_pred -h-hhccCCCCCEEECcCCc
Confidence 2 26778999999999874
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=2.9e-12 Score=113.61 Aligned_cols=198 Identities=14% Similarity=0.035 Sum_probs=108.5
Q ss_pred cCceEEEeeeecCCccc-ccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.++++|+ +..+.... ...+.....+++|++|+++++.+.... ....+++|++|+++++.+........+..+++|+
T Consensus 52 ~~L~~L~--L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLS--LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEE--CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred ccCCEEE--CCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 4666776 43322111 112333445677777777776644222 2456777777777777662221112245677777
Q ss_pred EEEeeccCCCC--ccccccCCCceEEEccccc-c--chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-E--EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (347)
Q Consensus 220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 294 (347)
.|++.+|.... ...+..+++|+.|+++++. . ........+++|++|+++++.........+..+++|+.|+++++
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 77777764321 1123446777777777765 1 12222335677777777754443222233456777777777776
Q ss_pred ccCchHHHHHHccCCCCCEEeecCcCCchhh---hccC-cccceEecccccC
Q 019031 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISS-NQLKNLLFRSCKY 342 (347)
Q Consensus 295 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~-~~L~~L~l~~c~~ 342 (347)
.++.... ..+..+++|+.|+++++...... .... ++|+.|++++++.
T Consensus 210 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 210 NFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ccCccCh-hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 6654211 12456777777777776433221 1223 3777777776553
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.27 E-value=1.9e-11 Score=106.49 Aligned_cols=153 Identities=15% Similarity=0.026 Sum_probs=74.8
Q ss_pred ccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCc
Q 019031 165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL 240 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L 240 (347)
+..+++|++|+++++.+.... ....+++|++|+++++.+..-. ...+.++++|+.|++.++.... ...+..+++|
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 334566666666666544322 2245666666666666552111 1224456666666666554211 1113345666
Q ss_pred eEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031 241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
+.|+++++. ..+.. ....+++|++|.++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|++++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecC
Confidence 666666654 11111 112456666666654333222222244556666666665555431 112334556666666655
Q ss_pred c
Q 019031 319 C 319 (347)
Q Consensus 319 c 319 (347)
+
T Consensus 215 N 215 (270)
T 2o6q_A 215 N 215 (270)
T ss_dssp S
T ss_pred C
Confidence 3
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=3e-12 Score=111.70 Aligned_cols=59 Identities=20% Similarity=0.072 Sum_probs=24.1
Q ss_pred ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeecc
Q 019031 167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC 226 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c 226 (347)
.+++|++|++++|.+.... ....+++|++|+++++.+..- ....+..+++|+.|++.+|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCC
Confidence 3444555555544433221 123444555555544444211 0111334444555555444
No 28
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=1.3e-11 Score=108.37 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=125.0
Q ss_pred cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceE
Q 019031 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI 242 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~ 242 (347)
.++|++|+++++.+.... ....+++|++|+++++.++.-.. ..+.++++|+.|++.++..+..+ .+..+++|+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 368999999998865432 46789999999999997742211 23567999999999998644433 3556799999
Q ss_pred EEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
|++.++. ... ......+++|++|+++++.........++.+++|+.|+++++.++.. ....+..+++|+.|+++++.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc
Confidence 9999986 222 22234689999999996555433333467899999999998887752 12345678999999999985
Q ss_pred Cchh---hhccCcccceEeccccc
Q 019031 321 LPGK---IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 321 ~~~~---~~~~~~~L~~L~l~~c~ 341 (347)
.... ....+++|+.|+++++.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHhHccCcccccEeeCCCCc
Confidence 4332 23456899999998764
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=1.2e-11 Score=110.03 Aligned_cols=194 Identities=15% Similarity=0.047 Sum_probs=120.9
Q ss_pred CceEEEeeeecCCcc-cccccccccccccccEEEEee-eeccCC--CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 143 GVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVW-CRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
++++|+ +...... ...+|..+..+++|++|++++ +.+... .....+++|++|+|+++.+.... ...+..+++|
T Consensus 51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTL 127 (313)
T ss_dssp CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTC
T ss_pred eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCC
Confidence 678888 5443222 125677788899999999995 655422 24678999999999999874221 1236789999
Q ss_pred cEEEeeccCCCCc--cccccCCCceEEEccccc-c-chhhhhhcCC-CccEEEeeeeCCCC-------------------
Q 019031 219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARR------------------- 274 (347)
Q Consensus 219 e~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p-~L~~L~l~~~~~~~------------------- 274 (347)
+.|++.++..... ..+..+++|+.|+++++. . .+......++ +|+.|+++.+....
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N 207 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence 9999998864322 234567888888888876 1 2222223444 77777776332211
Q ss_pred ----CceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031 275 ----PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 275 ----~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
.....+..+++|+.|+++++.++... .. +..+++|+.|+++++.... ......++|+.|+++++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 11112345667777777666655321 11 4556777777777764332 223355678888877664
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=3.9e-11 Score=107.48 Aligned_cols=170 Identities=16% Similarity=0.100 Sum_probs=80.9
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+.. ....+..+..+++|++|+++++.+...+ ...+++|++|+++++.+.... ...+.++++|+.|
T Consensus 76 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 150 (330)
T 1xku_A 76 KNLHTLI--LINNKI-SKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVV 150 (330)
T ss_dssp TTCCEEE--CCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEE
T ss_pred CCCCEEE--CCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccC-HhHhcCCccccEE
Confidence 4666666 433211 1112334455677777777776654322 223367777777766663221 1234567777777
Q ss_pred EeeccCCC----CccccccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 222 CFSNCWGL----KHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 222 ~l~~c~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
++.++... ....+.++++|+.|+++++. +..+.. ..++|++|+++++.........+..+++|+.|+++++.+
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 77666431 11223345566666666553 211111 124555555553322211112234455555555555444
Q ss_pred CchHHHHHHccCCCCCEEeecCc
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+... ...+..+++|+.|++++|
T Consensus 229 ~~~~-~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 229 SAVD-NGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CEEC-TTTGGGSTTCCEEECCSS
T ss_pred ceeC-hhhccCCCCCCEEECCCC
Confidence 4311 112334455555555554
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=3.1e-11 Score=113.69 Aligned_cols=196 Identities=19% Similarity=0.093 Sum_probs=100.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.++++|+ +..+.. ....+..+..+++|++|+++++.+... ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus 104 ~~L~~L~--Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~ 179 (477)
T 2id5_A 104 SNLTKLD--ISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLI 179 (477)
T ss_dssp TTCCEEE--CTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCC
T ss_pred CCCCEEE--CCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCc
Confidence 4677777 433211 112233344567788888877764322 14567788888888887763221 23356778888
Q ss_pred EEEeeccCCCC--ccccccCCCceEEEccccc--cchhhh------------------------hhcCCCccEEEeeeeC
Q 019031 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS--EEIEIV------------------------EISVPSLQQLTLLFYG 271 (347)
Q Consensus 220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~--~~~~~~------------------------~~~~p~L~~L~l~~~~ 271 (347)
.|++.++.... ...+..+++|+.|++.+|. ..+... ...+++|+.|+++++.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 88887764311 1123345566666666543 111111 1234455555554322
Q ss_pred CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031 272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~ 342 (347)
........+..+++|+.|++.++.+.... ...+..+++|+.|+++++.... .....+++|+.|++.+++.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 22111112344556666666555544321 1234456667777776653211 1223456777777766543
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.24 E-value=4.5e-11 Score=112.02 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=113.9
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
++++.|+ +..+.-.. ++ +..+++|++|++++|.+... ....+++|++|+++++.++.- . +..+++|+.|
T Consensus 64 ~~L~~L~--Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L 132 (457)
T 3bz5_A 64 TGLTKLI--CTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYL 132 (457)
T ss_dssp TTCSEEE--CCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--ccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEE
Confidence 5677777 44332222 22 44567777777777766554 255677777777777766332 1 5667777777
Q ss_pred EeeccCCCCccccccCCCceEEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
++.+|. +..+.+..+++|+.|++.+|. ....+. ..+++|+.|+++++.... +.++.+++|+.|++.++.++...
T Consensus 133 ~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~---l~l~~l~~L~~L~l~~N~l~~~~ 207 (457)
T 3bz5_A 133 NCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLD 207 (457)
T ss_dssp ECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC---CCCTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce---eccccCCCCCEEECcCCcCCeec
Confidence 777764 333456667778888887774 222222 256788888887554433 22677888888888887776631
Q ss_pred HHHHHccCCCCCEEeecCcCCchhhhccCcccceEeccccc
Q 019031 301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~ 341 (347)
+..+++|+.|+++++.....-...+++|+.|+++++.
T Consensus 208 ----l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 208 ----LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP 244 (457)
T ss_dssp ----CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred ----cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence 5667888888888874322113356788888887654
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.5e-11 Score=108.17 Aligned_cols=173 Identities=14% Similarity=0.034 Sum_probs=119.7
Q ss_pred cCceEEEeeeecCCcccccccc-cccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
.++++|+ +..+.- ..++. .+..+++|++|+++++.+.... ...++++|++|+++++.++.-. ...+.++++|
T Consensus 52 ~~L~~L~--l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLD--LSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL 126 (353)
T ss_dssp TTCCEEE--CTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred ccCcEEE--CCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence 4788888 544322 23333 4566899999999998765432 4678899999999999884221 2336789999
Q ss_pred cEEEeeccCCCC--c-cccccCCCceEEEccccc--cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEee
Q 019031 219 EDLCFSNCWGLK--H-LCVSKASKLKIMEIRSFS--EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV 292 (347)
Q Consensus 219 e~L~l~~c~~~~--~-~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 292 (347)
+.|++.++.... . ..+..+++|+.|++.++. ..+ ......+++|++|+++++.........+..+++|+.|+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 999999885322 1 134567899999999874 222 1223367899999998665543333456778999999998
Q ss_pred ccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 293 SVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
++.+... ....+..+++|+.|+++++.
T Consensus 207 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 207 MKQHILL-LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred CCccccc-hhhhhhhcccccEEECCCCc
Confidence 8887542 23345568999999998873
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=5.5e-12 Score=111.83 Aligned_cols=193 Identities=16% Similarity=0.056 Sum_probs=126.8
Q ss_pred cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccCC----CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCC
Q 019031 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP 216 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp 216 (347)
.++++|+ +..+. ...++... ..+++|++|+++++.+... .....+++|++|+++++.+.. +..-+..++
T Consensus 28 ~~l~~L~--L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLE--LESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE 101 (306)
T ss_dssp TTCCEEE--CCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred CCCCEEE--CCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence 4788888 54332 22455443 4578888888888775422 123467888888888886621 111155688
Q ss_pred CccEEEeeccCCCCc---cccccCCCceEEEccccc-c-chhhhhhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEE
Q 019031 217 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLD 290 (347)
Q Consensus 217 ~Le~L~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ 290 (347)
+|+.|++.++..... ..+..+++|+.|+++++. . ........+++|++|.++++.... .....+..+++|+.|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 899998887743221 134567899999999886 1 112223367899999998544332 2334567889999999
Q ss_pred eeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031 291 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 291 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
++++.++... ...+..+++|+.|+++++.... ......++|+.|+++++.
T Consensus 182 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 182 LSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 9888877531 2345678999999999875322 123456899999998875
No 35
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=1.5e-11 Score=109.27 Aligned_cols=205 Identities=17% Similarity=0.118 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHcCceEEEeeeecCCcccccccccc--cccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeee
Q 019031 130 PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERV 201 (347)
Q Consensus 130 ~~~~~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~ 201 (347)
..+..........++++|+ +..+.. ....+..+ ...++|++|++++|.+.... ....+++|++|+|+++
T Consensus 79 ~~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 79 QLLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA 155 (310)
T ss_dssp HHHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred HHHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence 3455555555567899999 654322 22334444 56789999999999876432 2246899999999999
Q ss_pred eeChHHHHHHHhcCCCccEEEeeccCCCCc------cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEeeee
Q 019031 202 CLDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLFY 270 (347)
Q Consensus 202 ~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~------~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~~ 270 (347)
.+.... ...+.++++|+.|++++|..... ..+..+++|+.|++++|. ..+.. +...+++|++|+++++
T Consensus 156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 883222 12356899999999999974321 223467899999999986 22222 2236799999999965
Q ss_pred CCCCCceeeccCC---CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEecccccC
Q 019031 271 GARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 271 ~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~~ 342 (347)
......+..+..+ ++|+.|+++++.++. +...+ +++|+.|+++++.... ......++|+.|++++.+.
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 5544322223343 799999999988873 22211 4799999999985433 3345678999999987653
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.22 E-value=6e-11 Score=110.96 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=69.3
Q ss_pred ccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCC
Q 019031 235 SKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE 312 (347)
Q Consensus 235 ~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 312 (347)
..+++|+.|+++++. ... ......+++|++|+++++.........+..+++|+.|+++++.++... ...+..+++|+
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~ 374 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLK 374 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhcccccccc
Confidence 346778888887775 111 112235678888888755443332334577888888888887776431 23456688888
Q ss_pred EEeecCcCCch---hhhccCcccceEecccccCcc
Q 019031 313 DLFVTRCCLPG---KIKISSNQLKNLLFRSCKYLK 344 (347)
Q Consensus 313 ~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~ 344 (347)
.|+++++.... .....+++|+.|+|++++.--
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 88888874322 223456788888888766433
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.22 E-value=8.4e-12 Score=120.13 Aligned_cols=174 Identities=16% Similarity=0.064 Sum_probs=82.3
Q ss_pred cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHH-HHHHHhcCCCccEEEeeccCCCCc-cccccCCCceEEEc
Q 019031 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEI 245 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~L~~L~l 245 (347)
+++|+.|++.++.+........+++|++|+++++.++... ....+.++++|+.|++.+|..... ..+..+++|+.|++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence 3444555554444333222356777777777777652211 112245677777777776642110 01333455555555
Q ss_pred cccc-cc--------------------------hhhhhhcCCCccEEEeeeeCCC-CCceeeccCCCCCcEEEeeccccC
Q 019031 246 RSFS-EE--------------------------IEIVEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 246 ~~~~-~~--------------------------~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
.++. .. .......+++|+.|.++++... ...+..+..+++|+.|+++++.++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 5543 00 1111123444444444422211 111223445566666666555554
Q ss_pred chHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031 298 DNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~ 342 (347)
+. ....+..+++|+.|++++|.... .....+++|+.|++++++.
T Consensus 484 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 484 QL-SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EE-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 32 12234456666666666653221 1223456677777766543
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=8.4e-12 Score=121.13 Aligned_cols=174 Identities=16% Similarity=0.065 Sum_probs=85.6
Q ss_pred ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChH-HHHHHHhcCCCccEEEeeccCCCCc-cccccCCCceEEE
Q 019031 167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIME 244 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~L~~L~ 244 (347)
.+++|++|++++|..........+++|++|+++++.+... .....+..+++|+.|++.+|..... ..+.++++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 4556666666665322222345677777777777766211 1122356678888888877642110 1223345555555
Q ss_pred ccccc-cchh--hhhhcCCCccEEEeeeeCC------------------------CC-CceeeccCCCCCcEEEeecccc
Q 019031 245 IRSFS-EEIE--IVEISVPSLQQLTLLFYGA------------------------RR-PRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 245 l~~~~-~~~~--~~~~~~p~L~~L~l~~~~~------------------------~~-~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
+.++. .... .....+++|+.|+++++.. .. .....++.+++|+.|+++++.+
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 55553 1111 1112344455555443222 11 1122334556666666655555
Q ss_pred CchHHHHHHccCCCCCEEeecCcCCchh---hhccCcccceEeccccc
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~ 341 (347)
+.. ....+..+++|+.|++++|..... .....++|+.|+|+++.
T Consensus 486 ~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 486 EQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEE-CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred Ccc-ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 432 122344566666666666533221 22344567777776654
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=6.2e-12 Score=117.87 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=136.9
Q ss_pred HHcCceEEEeeeecCCcccc---cccccccccccccEEEEeeeeccCCC---CcCCCC----CcCEEEeeeeeeCh---H
Q 019031 140 VENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDE---Q 206 (347)
Q Consensus 140 ~~~~l~~L~~~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~----~L~~L~L~~~~~~~---~ 206 (347)
..++++.|+ +..+..... .++..+..+++|++|+++++.+.... ....++ +|++|+|+++.+++ .
T Consensus 26 ~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 347999999 655443322 44555666899999999998865421 123344 79999999999854 3
Q ss_pred HHHHHHhcCCCccEEEeeccCCCCccc--------cccCCCceEEEccccc-c--c---hhhhhhcCCCccEEEeeeeCC
Q 019031 207 MVQKLASECPLLEDLCFSNCWGLKHLC--------VSKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYGA 272 (347)
Q Consensus 207 ~l~~i~~~cp~Le~L~l~~c~~~~~~~--------~~~~~~L~~L~l~~~~-~--~---~~~~~~~~p~L~~L~l~~~~~ 272 (347)
.+...+..+++|++|++.+|.. .... ....++|++|++++|. . . +......+++|++|+++++..
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4566678899999999999863 2211 1124689999999986 1 1 122233679999999995544
Q ss_pred CCCceeec-----cCCCCCcEEEeeccccCchH---HHHHHccCCCCCEEeecCcCCchh----h----hccCcccceEe
Q 019031 273 RRPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I----KISSNQLKNLL 336 (347)
Q Consensus 273 ~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~----~~~~~~L~~L~ 336 (347)
.......+ ...++|+.|+++++.+++.. +...+..+++|+.|++++|..... + ....++|+.|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 22111111 23679999999999888754 455667899999999999853321 1 12468999999
Q ss_pred ccccc
Q 019031 337 FRSCK 341 (347)
Q Consensus 337 l~~c~ 341 (347)
+++|.
T Consensus 263 L~~n~ 267 (461)
T 1z7x_W 263 IWECG 267 (461)
T ss_dssp CTTSC
T ss_pred CcCCC
Confidence 99984
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=5.1e-11 Score=98.61 Aligned_cols=144 Identities=19% Similarity=0.204 Sum_probs=84.2
Q ss_pred cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEc
Q 019031 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEI 245 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l 245 (347)
+++|++|+++++.+........+++|++|+++++.+..- . .+..+++|+.|++.+|.... ...+..+++|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 466777777776655433455667777777777755221 1 25567777777777765322 223445677777777
Q ss_pred cccc-cc-hhhhhhcCCCccEEEeeeeC-CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 246 RSFS-EE-IEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 246 ~~~~-~~-~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++|. .. .......+++|++|+++++. ... .. .+..+++|+.|+++++.+++.. .+..+++|+.|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence 7765 11 11222356677777776543 222 12 3566777777777776666522 3456677777777664
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=1.3e-11 Score=119.81 Aligned_cols=184 Identities=14% Similarity=-0.005 Sum_probs=124.1
Q ss_pred cccccccccccEEEEeeeeccCC-CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCC
Q 019031 162 PQAIFSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKAS 238 (347)
Q Consensus 162 ~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~ 238 (347)
+..+..+++|++|++++|.+... .....+++|++|+++++.+........+..+++|+.|++.+|..... -.+.+++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 33444567777777777664432 24567888888888888773222212356788999999988864321 2345678
Q ss_pred CceEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031 239 KLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (347)
Q Consensus 239 ~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 315 (347)
+|+.|++++|. .. .......+++|+.|+++++.........+..+++|+.|+++++.+++. ....+..+++|+.|+
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLD 527 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEE
Confidence 99999999986 11 222334779999999986655433334467899999999999888763 234567789999999
Q ss_pred ecCcCCc--hhhhccCc-ccceEecccccCcccc
Q 019031 316 VTRCCLP--GKIKISSN-QLKNLLFRSCKYLKLC 346 (347)
Q Consensus 316 l~~c~~~--~~~~~~~~-~L~~L~l~~c~~l~~~ 346 (347)
+++|... .......+ +|+.|++++++..-.|
T Consensus 528 l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 9998532 11123444 6999999887654333
No 42
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.21 E-value=3.7e-11 Score=116.20 Aligned_cols=166 Identities=16% Similarity=0.054 Sum_probs=123.1
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+.. ..++ .+..+++|+.|+|++|.+........+++|+.|+|+++.+..- . -+..+++|+.|
T Consensus 43 ~~L~~L~--l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L 114 (605)
T 1m9s_A 43 NSIDQII--ANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL 114 (605)
T ss_dssp TTCCCCB--CTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred CCCCEEE--CcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence 6788888 543322 2233 4667899999999999876554577899999999999988432 1 26789999999
Q ss_pred EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
+|.+|....--.+..+++|+.|.+++|. ..+ .....+++|+.|+++.+....... +..+++|+.|+|+++.+.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 9998865433345678999999999986 222 223478999999998665544333 68899999999999888763
Q ss_pred HHHHHccCCCCCEEeecCcCC
Q 019031 301 FNHLISKFPSLEDLFVTRCCL 321 (347)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~c~~ 321 (347)
..+..+++|+.|++++|+.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEE
T ss_pred --hHHccCCCCCEEEccCCcC
Confidence 2367799999999998743
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.21 E-value=2.8e-11 Score=113.28 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=135.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.+++.|+ +..+... ...+..+..+++|++|+|+++.+.... ...++++|++|+|+++.+..-. ...+.++++|+
T Consensus 75 ~~l~~L~--L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLN--LMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred CCccEEE--CcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence 4788888 5443221 122344556899999999998765332 4678999999999999874211 12356799999
Q ss_pred EEEeeccCCCC--ccccccCCCceEEEccccccchhhh----hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
.|++.++.... ...+..+++|+.|++.+|. .+..+ ...+++|++|+++++..... ..+..+++|+.|++++
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG 227 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTT
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcC
Confidence 99999886421 1234567999999999876 33332 23679999999986555432 2457889999999999
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
+.++.. ....+..+++|+.|+++++.... .....+++|+.|+|+++.
T Consensus 228 N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 228 NHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp SCCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 888753 23456789999999999985332 223456899999998763
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=1.1e-10 Score=102.81 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=79.8
Q ss_pred cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccc
Q 019031 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~ 247 (347)
+++|+.|++++|.+........+++|++|+++++.+.+-. . +..+++|+.|++.+|....--.+..+++|+.|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence 4556666666655443333445566666666666552211 1 455666666666655432222234455666666665
Q ss_pred cc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hh
Q 019031 248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KI 325 (347)
Q Consensus 248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~ 325 (347)
|. ..+. ....+++|+.|+++.+..... ..+..+++|+.|+++++.+++... +..+++|+.|+++++..-. ..
T Consensus 122 n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 122 NGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp SCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh
Confidence 54 1111 112455666666654333222 234455666666665555544211 4455666666666552111 11
Q ss_pred hccCcccceEecccc
Q 019031 326 KISSNQLKNLLFRSC 340 (347)
Q Consensus 326 ~~~~~~L~~L~l~~c 340 (347)
....++|+.|+++++
T Consensus 196 l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCSEEEEEEE
T ss_pred hccCCCCCEEECcCC
Confidence 224455566655544
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=3.7e-11 Score=112.41 Aligned_cols=83 Identities=14% Similarity=0.006 Sum_probs=54.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC--C--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--F--DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~ 217 (347)
.++++|+ +..+.. ....+..+..+++|++|++++|.+... . ....+++|++|+|+++.+.......++.++++
T Consensus 79 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 79 SSLIILK--LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCCEEE--CTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccCCEEe--CCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 5788888 543221 122344555678888888888876531 1 25678888888888887743322334677888
Q ss_pred ccEEEeeccC
Q 019031 218 LEDLCFSNCW 227 (347)
Q Consensus 218 Le~L~l~~c~ 227 (347)
|+.|++.+|.
T Consensus 156 L~~L~L~~n~ 165 (455)
T 3v47_A 156 FHVLDLTFNK 165 (455)
T ss_dssp CCEEECTTCC
T ss_pred ccEEeCCCCc
Confidence 8888888774
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=2.9e-11 Score=114.25 Aligned_cols=168 Identities=15% Similarity=0.060 Sum_probs=105.1
Q ss_pred ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceE
Q 019031 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKI 242 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~ 242 (347)
+..+++|++|+|++|.+... ...++|++|+++++.++... ...+++|+.|++.+|.... ...+..+++|+.
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 148 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEE---EECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred cccCCCCCEEEecCCcCCCC---CCCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence 44566677777777665532 22367777777776663221 1246777888887775322 223445688888
Q ss_pred EEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 243 MEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 243 L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
|+++++. .. ...+...+++|+.|+++++..... .....+++|+.|+++++.+++. ...+..+++|+.|+++++
T Consensus 149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS
T ss_pred EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC
Confidence 8888876 11 122223578888888885544322 2234588999999988887752 222567889999999987
Q ss_pred CCch--hhhccCcccceEecccccCc
Q 019031 320 CLPG--KIKISSNQLKNLLFRSCKYL 343 (347)
Q Consensus 320 ~~~~--~~~~~~~~L~~L~l~~c~~l 343 (347)
.... .....+++|+.|++.++...
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cCcccchhhccCCCCCEEEcCCCCCc
Confidence 4322 22335578999999887643
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.20 E-value=3e-11 Score=110.83 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.6
Q ss_pred CCCccEEEee
Q 019031 259 VPSLQQLTLL 268 (347)
Q Consensus 259 ~p~L~~L~l~ 268 (347)
+|+|++|+++
T Consensus 247 l~~L~~L~Ls 256 (390)
T 3o6n_A 247 YPGLVEVDLS 256 (390)
T ss_dssp CTTCSEEECC
T ss_pred CCCccEEECC
Confidence 3444444444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=2.3e-11 Score=114.02 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=35.4
Q ss_pred CCCCCcEEEeeccccCchH---HHHHHccCCCCCEEeecCcCCchh----h----hccCcccceEeccccc
Q 019031 282 RSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I----KISSNQLKNLLFRSCK 341 (347)
Q Consensus 282 ~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~----~~~~~~L~~L~l~~c~ 341 (347)
.+++|+.|+++++.+++.. +...+..+++|++|+++++..... + ....++|+.|++++|.
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 4567777777666666544 334445567777777777643211 1 1123577777777775
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.19 E-value=4.4e-11 Score=119.39 Aligned_cols=154 Identities=15% Similarity=0.002 Sum_probs=100.8
Q ss_pred cccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
..+++|++|++++|.+.... ....+++|++|+++++.+.+... ..+..+++|+.|++.+|..........+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 45677888888887755322 35678888888888887753332 34677888888888888653333333567888888
Q ss_pred ccccc-c-chhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 245 IRSFS-E-EIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 245 l~~~~-~-~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+.+|. . .+.... ..+++|++|+++++......+..++.+++|+.|++.++.+.+......+..+++|+.|++++|.
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 88875 1 111111 2248888888875444333334467788888888877776543333446678888888888773
No 50
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.19 E-value=3.4e-11 Score=110.36 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=137.4
Q ss_pred cCceEEEeeeecCCccc---ccccccccccccccEEEEeeeeccCCC------------CcCCCCCcCEEEeeeeeeChH
Q 019031 142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF------------DSIMLCSLKKLTLERVCLDEQ 206 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~~------------~~~~~~~L~~L~L~~~~~~~~ 206 (347)
+++++|+ +..+.... ..+...+..+++|++|+|++|.+.... ....+++|++|+|+++.+++.
T Consensus 32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 6899999 65432221 123334556899999999997543110 125789999999999999553
Q ss_pred ---HHHHHHhcCCCccEEEeeccCCCCc--cc----cccC---------CCceEEEccccc---cchhh---hhhcCCCc
Q 019031 207 ---MVQKLASECPLLEDLCFSNCWGLKH--LC----VSKA---------SKLKIMEIRSFS---EEIEI---VEISVPSL 262 (347)
Q Consensus 207 ---~l~~i~~~cp~Le~L~l~~c~~~~~--~~----~~~~---------~~L~~L~l~~~~---~~~~~---~~~~~p~L 262 (347)
.+...+..+++|+.|++.+|..... .. +..+ ++|+.|.+++|. ..+.. ....+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3555578899999999999964211 11 1223 799999999986 12222 22378899
Q ss_pred cEEEeeeeCCCCC----cee-eccCCCCCcEEEeeccccCch---HHHHHHccCCCCCEEeecCcCCchh----hhc---
Q 019031 263 QQLTLLFYGARRP----RVV-EVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCCLPGK----IKI--- 327 (347)
Q Consensus 263 ~~L~l~~~~~~~~----~~~-~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~----~~~--- 327 (347)
++|.++++..... ... .+..+++|+.|+|+++.+++. .+...+..+++|+.|++++|..... +..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 9999996655321 111 456889999999999988753 3455667899999999999864332 111
Q ss_pred --cCcccceEeccccc
Q 019031 328 --SSNQLKNLLFRSCK 341 (347)
Q Consensus 328 --~~~~L~~L~l~~c~ 341 (347)
.+++|+.|+|++|.
T Consensus 270 ~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNE 285 (386)
T ss_dssp TCSSCCCCEEECCSSC
T ss_pred hccCCCeEEEECcCCc
Confidence 27899999999886
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=3.2e-11 Score=112.50 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=132.7
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.+++.|+ +..+.... ..+..+..+++|++|+|++|.+.... ...++++|++|+|+++.++.-. ...+..+++|+
T Consensus 64 ~~l~~L~--L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLN--LHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEE--CCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred CCCcEEE--ccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence 4678888 54432211 12234556899999999998765332 4577899999999999873211 12356789999
Q ss_pred EEEeeccCCCC--ccccccCCCceEEEccccccchhh----hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEI----VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
.|++.++.... ...+..+++|+.|++.++. .+.. ....+++|++|+++++...... .+..+++|+.|++++
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSG 216 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTT
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCC
Confidence 99999886321 2234567899999999876 2222 2236899999999865553221 357889999999998
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
+.++.. ....+..+++|+.|+++++.... .....+++|+.|+|+++.
T Consensus 217 N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 217 NHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp SCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred CccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 887753 23456789999999999874332 223466899999998763
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.19 E-value=8.6e-11 Score=107.77 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=73.9
Q ss_pred cccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031 234 VSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL 311 (347)
Q Consensus 234 ~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L 311 (347)
+..+++|+.|+++++. ... ......+++|++|.++++... .....+..+++|+.|+++++.+.. +...+..+++|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L 320 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRL 320 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTC
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee--cCccccccCcC
Confidence 3456788888888875 111 223346899999999855442 233344678999999999888764 22234568999
Q ss_pred CEEeecCcCCchhhhccCcccceEecccccC
Q 019031 312 EDLFVTRCCLPGKIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 312 ~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~ 342 (347)
+.|++++|.....-...+++|+.|++.+++.
T Consensus 321 ~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 9999999864433345678999999987653
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.19 E-value=4.5e-11 Score=106.56 Aligned_cols=186 Identities=14% Similarity=0.051 Sum_probs=117.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+... ..+. +..+++|++|++++|.+... ...++|++|+++++.+.... ...+++|+.|
T Consensus 58 ~~L~~L~--Ls~n~l~--~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L 125 (317)
T 3o53_A 58 TKLELLN--LSSNVLY--ETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS----CSRGQGKKNI 125 (317)
T ss_dssp TTCCEEE--CTTSCCE--EEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEECCSSCCSEEE----ECCCSSCEEE
T ss_pred CcCCEEE--CCCCcCC--cchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEECCCCccCCcC----ccccCCCCEE
Confidence 5677777 4332211 1111 44567777777777765532 23477777777777663221 2346778888
Q ss_pred EeeccCCCC--ccccccCCCceEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 222 CFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 222 ~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
++.++.... ...+..+++|+.|+++++. .. ...+...+++|+.|+++++..... .....+++|+.|+++++.+
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence 888775322 2234456889999999876 11 122223578999999985544322 2223588999999998888
Q ss_pred CchHHHHHHccCCCCCEEeecCcCCc--hhhhccCcccceEecccccCc
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCCLP--GKIKISSNQLKNLLFRSCKYL 343 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~~~L~~L~l~~c~~l 343 (347)
+.- ...+..+++|+.|+++++... .......++|+.|++++++..
T Consensus 204 ~~l--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 AFM--GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEE--CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred Ccc--hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 752 222567899999999987432 222345679999999887643
No 54
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=5.3e-11 Score=115.09 Aligned_cols=127 Identities=20% Similarity=0.122 Sum_probs=62.6
Q ss_pred ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
+..+++|+.|+|++|.+........+++|+.|+|+++.+..- . -+..+++|+.|+|.+|.....-.+..+++|+.|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEE
T ss_pred hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccCCchhhcccCCCCEEE
Confidence 344556666666665554433445556666666666555221 1 1445566666666555432222234455666666
Q ss_pred ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
+++|. ..+.. ...+++|+.|+++.+..... ..+..+++|+.|+|.++.+.
T Consensus 160 Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 160 LEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 66554 11111 22455666666654333221 12455566666666555443
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.18 E-value=1.5e-10 Score=108.52 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=98.7
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+.-.. ++ +..+++|++|+++++.+... ....+++|++|+++++.++.- . +..+++|+.|
T Consensus 85 ~~L~~L~--Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L 153 (457)
T 3bz5_A 85 TNLTYLA--CDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL 153 (457)
T ss_dssp TTCSEEE--CCSSCCSC--CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEE--CcCCCCce--ee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence 5788888 54432222 22 45678889999888877654 367788888888888877432 1 5678888888
Q ss_pred EeeccCCCCccccccCCCceEEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
++.+|.....+.+..+++|+.|+++++. +..+. ..+++|+.|.++.+..... .++.+++|+.|+++++.+++-
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i- 227 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI- 227 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-
T ss_pred ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-
Confidence 8888866665566666777777777764 22222 2456666666664333221 345566666666665555541
Q ss_pred HHHHHccCCCCCEEeecCc
Q 019031 301 FNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~c 319 (347)
. +..+++|+.|+++++
T Consensus 228 -p--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 228 -D--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -C--CTTCTTCSEEECCSS
T ss_pred -C--ccccCCCCEEEeeCC
Confidence 1 344556666665554
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.17 E-value=3.7e-11 Score=116.58 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=73.5
Q ss_pred CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc-cc--hh--hhhhcCCC
Q 019031 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IE--IVEISVPS 261 (347)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~~--~~--~~~~~~p~ 261 (347)
.+++|++|+++++.+........+.++++|+.|++.+|.... ...+..+++|+.|+++++. .. +. .....+++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 344455555544444211111223344555555555443211 1112335566666666554 00 00 11224566
Q ss_pred ccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecc
Q 019031 262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFR 338 (347)
Q Consensus 262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~ 338 (347)
|+.|+++++.........+..+++|+.|+++++.+++.. ...+..+++| .|+++++.... ......++|+.|+++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG-GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC-hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 666666644332222223456667777777666665432 2344556666 66666663322 112345677888887
Q ss_pred cccCc
Q 019031 339 SCKYL 343 (347)
Q Consensus 339 ~c~~l 343 (347)
+++..
T Consensus 556 ~N~~~ 560 (606)
T 3t6q_A 556 QNPLD 560 (606)
T ss_dssp TCCEE
T ss_pred CCCcc
Confidence 76643
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.17 E-value=1.6e-11 Score=109.29 Aligned_cols=192 Identities=19% Similarity=0.102 Sum_probs=97.9
Q ss_pred cCceEEEeeeecCCcccccccccc--cccccccEEEEeeeeccCCC-CcCC-----CCCcCEEEeeeeeeChHHHHHHHh
Q 019031 142 NGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF-DSIM-----LCSLKKLTLERVCLDEQMVQKLAS 213 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~-~~~~-----~~~L~~L~L~~~~~~~~~l~~i~~ 213 (347)
.++++|+ +..+.- ...+|..+ ..+++|++|+++++.+...+ .... .++|++|+|+++.+..... ..+.
T Consensus 95 ~~L~~L~--L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~ 170 (312)
T 1wwl_A 95 SGLQELT--LENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVR 170 (312)
T ss_dssp SCCCEEE--EEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCC
T ss_pred CCccEEE--ccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhc
Confidence 5666666 432211 11233333 34566777777776654322 1112 2667777777666622111 1244
Q ss_pred cCCCccEEEeeccCCCCc------cccccCCCceEEEccccc-cchhhh----hhcCCCccEEEeeeeCCCCCce-eecc
Q 019031 214 ECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYGARRPRV-VEVA 281 (347)
Q Consensus 214 ~cp~Le~L~l~~c~~~~~------~~~~~~~~L~~L~l~~~~-~~~~~~----~~~~p~L~~L~l~~~~~~~~~~-~~~~ 281 (347)
.+++|+.|++.++..... +....+++|+.|+++++. ..+..+ ...+++|+.|+++.+....... ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 567777777776653221 111445677777777665 111111 1245677777776444333221 2234
Q ss_pred CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEeccccc
Q 019031 282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 282 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~ 341 (347)
.+++|+.|+++++.++. +...+ .++|+.|+++++.... ......++|+.|++.+.+
T Consensus 251 ~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred hcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence 45677777777666652 22111 1577777777663211 113345677777776654
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.16 E-value=8e-11 Score=110.90 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=102.6
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.++++|+ +..+... ...+..+..+++|++|++++|.+.... ....+++|+.|+|.++.+.... ...+..+++|+
T Consensus 128 ~~L~~L~--l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~ 203 (477)
T 2id5_A 128 YNLKSLE--VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLK 203 (477)
T ss_dssp TTCCEEE--ECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCC
T ss_pred ccCCEEE--CCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccc
Confidence 4667776 4332111 111223344566777777766654332 2345666666666665542111 01134455555
Q ss_pred EEEeeccCC-----------------------CCcc---ccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeC
Q 019031 220 DLCFSNCWG-----------------------LKHL---CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYG 271 (347)
Q Consensus 220 ~L~l~~c~~-----------------------~~~~---~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~ 271 (347)
.|++.+|.. +..+ .+..+++|+.|+++++. ..+. .....+++|+.|.++++.
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 555555432 1111 23467899999999885 1221 122467999999999655
Q ss_pred CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCC-CGGGBSCGGGCCEEECCSSC
T ss_pred cceECHHHhcCcccCCEEECCCCcCcee-CHhHcCCCcccCEEEccCCC
Confidence 5433334567899999999999887652 22345678999999999864
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=6.7e-11 Score=114.70 Aligned_cols=36 Identities=19% Similarity=-0.038 Sum_probs=15.1
Q ss_pred cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee
Q 019031 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 203 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~ 203 (347)
+++|++|+|++|.+...+ ....+++|++|+|+++.+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 444444444444433221 123444444444444443
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.15 E-value=9.5e-11 Score=104.97 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=111.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeCh-HHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~cp~L 218 (347)
.++++|+ +..+. ...++..++ ++|++|+++++.+.... ....+++|++|+++++.+.. ......+.++++|
T Consensus 100 ~~L~~L~--Ls~n~--l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 100 VKLERLY--LSKNQ--LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCCEEE--CCSSC--CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCEEE--CCCCc--CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 5788888 54332 224444443 78999999998766443 35678999999999887742 2223346778999
Q ss_pred cEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 219 e~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
+.|++.++.. ..+.....++|+.|+++++. ... ......+++|++|+++++.........+..+++|+.|+++++.+
T Consensus 174 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 174 SYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred CEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 9999988753 33322223688888888875 111 12233678888888885444322222356778888888887776
Q ss_pred CchHHHHHHccCCCCCEEeecCcC
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+. +...+..+++|+.|+++++.
T Consensus 253 ~~--lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 253 VK--VPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp SS--CCTTTTTCSSCCEEECCSSC
T ss_pred cc--CChhhccCCCcCEEECCCCc
Confidence 63 33345667888888888763
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=4e-11 Score=104.64 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=84.2
Q ss_pred ccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCc
Q 019031 165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL 240 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L 240 (347)
+..+++|++|++++|.+.... ....+++|++|+|+++.+..... ..+.++++|+.|++.++.... ...+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 344566777777766543221 34556677777777665522111 124556777777776654321 1234455677
Q ss_pred eEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCc----EEEeeccccCchHHHHHHccCCCCCE
Q 019031 241 KIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KLDLVSVYFADNEFNHLISKFPSLED 313 (347)
Q Consensus 241 ~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~L~~ 313 (347)
+.|+++++. .. +......+++|++|+++++.........+..+++|+ .|+++++.+.... ......++|+.
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~ 204 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKE 204 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--TTSSCSCCEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--ccccCCCcccE
Confidence 777776664 11 122233556677777764433221111222233333 5555555544311 11112235666
Q ss_pred EeecCcCCch---hhhccCcccceEeccc
Q 019031 314 LFVTRCCLPG---KIKISSNQLKNLLFRS 339 (347)
Q Consensus 314 L~l~~c~~~~---~~~~~~~~L~~L~l~~ 339 (347)
|+++++.... .+....++|+.|++++
T Consensus 205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred EECCCCceeecCHhHhcccccccEEEccC
Confidence 6666653211 1223455666666663
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=2.2e-10 Score=111.09 Aligned_cols=189 Identities=19% Similarity=0.107 Sum_probs=100.0
Q ss_pred cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L 218 (347)
.+++.|+ +..+ ....+|..+ ..+++|++|+|++|.+.... ....+++|++|+|+++.++... +..+|.|
T Consensus 123 ~~L~~L~--L~~n--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L 194 (597)
T 3oja_B 123 PLLTVLV--LERN--DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSL 194 (597)
T ss_dssp TTCCEEE--CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTC
T ss_pred CCCCEEE--eeCC--CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhh
Confidence 4677777 5433 222455544 45788888888888765432 3567888888888888774322 3445666
Q ss_pred cEEEeeccCC----------------------------------------CCccccccCCCceEEEccccc-cch-hhhh
Q 019031 219 EDLCFSNCWG----------------------------------------LKHLCVSKASKLKIMEIRSFS-EEI-EIVE 256 (347)
Q Consensus 219 e~L~l~~c~~----------------------------------------~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~ 256 (347)
+.|++.++.. .....+..+++|+.|+++++. ... ....
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 6555554421 111112234555555555543 111 1112
Q ss_pred hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhccCcccceEe
Q 019031 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLL 336 (347)
Q Consensus 257 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~ 336 (347)
..+++|+.|.++++.... ....+..+++|+.|+|+++.+.. +...+..+++|+.|++++|.....-...+++|+.|+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ 351 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEE
Confidence 244555555555332211 22223446666666666665542 222234456667777766643332234556777777
Q ss_pred ccccc
Q 019031 337 FRSCK 341 (347)
Q Consensus 337 l~~c~ 341 (347)
|++++
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 76654
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.14 E-value=1.3e-10 Score=96.19 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=96.8
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+... .++ .+..+++|++|++++|.+........+++|++|+++++.++...... +..+++|+.|
T Consensus 44 ~~L~~L~--l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYIT--LANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HTCCEEE--EESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred CCccEEe--ccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 4777777 5433222 333 45567888888888886655445667888888888888775433333 5678888888
Q ss_pred EeeccCCCC--ccccccCCCceEEEccccccchhh--hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 222 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 222 ~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
++.+|.... .-.+..+++|+.|++++|. .+.. ....+|+|+.|+++++...... .+..+++|+.|++.++.+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 888875433 1234567888888888874 1222 2346788899988865543322 5677899999999888765
Q ss_pred c
Q 019031 298 D 298 (347)
Q Consensus 298 ~ 298 (347)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=3.2e-10 Score=108.66 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=132.7
Q ss_pred cCceEEEeeeecCCccccccccccc-ccccccEEEEeeeeccCC-----CCcCCCCCcCEEEeeeeeeChH-HHHHHHhc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQP-----FDSIMLCSLKKLTLERVCLDEQ-MVQKLASE 214 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~-----~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~ 214 (347)
.+++.|+ +..+. ...+|..++ .+++|++|++++|.+... .....+++|++|+++++.++.- .....+..
T Consensus 310 ~~L~~L~--l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 310 EKVKRIT--VENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp TTCCEEE--EESSC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred ccceEEE--eccCc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 4677777 44322 235565554 478999999999886531 1356789999999999988433 23455788
Q ss_pred CCCccEEEeeccCCCCccc--cccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031 215 CPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL 291 (347)
Q Consensus 215 cp~Le~L~l~~c~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 291 (347)
+++|+.|++++|.. ..+. +..+++|+.|++++|. +..+.. ..++|+.|+++.+..... ...+++|+.|++
T Consensus 386 l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~--l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~L 458 (549)
T 2z81_A 386 LKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG--IRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYI 458 (549)
T ss_dssp CTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSC--CSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred CCCCCEEECCCCCC-ccCChhhcccccccEEECCCCC--cccccchhcCCceEEECCCCChhhh----cccCChhcEEEC
Confidence 99999999998853 3322 3356899999999985 333332 236899999986544331 257899999999
Q ss_pred eccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccCcccc
Q 019031 292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKYLKLC 346 (347)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~ 346 (347)
+++.++. +.. ...+++|+.|+++++.... .....+++|+.|++++++..-.|
T Consensus 459 s~N~l~~--ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 459 SRNKLKT--LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CSSCCSS--CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCCccCc--CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 9888763 333 2468999999999984332 22346789999999888765443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=3.4e-11 Score=113.78 Aligned_cols=187 Identities=20% Similarity=0.128 Sum_probs=132.5
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
++++.|+ +..+... ...+..+..+++|++|+|++|.+........+++|++|+|+++.++. +...++|+.|
T Consensus 34 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp GGCCEEE--CCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred CCccEEE--eeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 4799999 6543222 12234556789999999999987643347789999999999998842 2245999999
Q ss_pred EeeccCCCCccccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeec-cCCCCCcEEEeeccccCc
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD 298 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~ 298 (347)
++.+|. +..+....+++|+.|+++++. ..+.. ....+++|+.|+++++.........+ ..+++|+.|+++++.+++
T Consensus 105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 999986 444444557899999999986 22222 22367999999998655543222233 368999999999998876
Q ss_pred hHHHHHHccCCCCCEEeecCcCCch--hhhccCcccceEeccccc
Q 019031 299 NEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~ 341 (347)
. . ....+++|+.|+++++.... ......++|+.|+++++.
T Consensus 184 ~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 184 V--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp E--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred c--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 3 1 12358999999999984322 223466899999998864
No 66
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.12 E-value=1.1e-10 Score=114.98 Aligned_cols=132 Identities=17% Similarity=0.072 Sum_probs=70.0
Q ss_pred HhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccccchhhh------------hhcCCCccEEEeeeeCCCCCce
Q 019031 212 ASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV------------EISVPSLQQLTLLFYGARRPRV 277 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~p~L~~L~l~~~~~~~~~~ 277 (347)
+.++++|+.|++.+|.... ...+.++++|+.|+++++. +..+ ...+++|+.|+++++.......
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 3445555555555543211 1113345666666666664 1111 1245667777776443332111
Q ss_pred eeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh---hhc-cCcccceEecccccCcccc
Q 019031 278 VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKI-SSNQLKNLLFRSCKYLKLC 346 (347)
Q Consensus 278 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~-~~~~L~~L~l~~c~~l~~~ 346 (347)
..++.+++|+.|+++++.++.- ....+..+++|+.|+++++..... ... .+++|+.|++++++..-.|
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred HHcccccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 2346677777777777666531 123345677788888877632221 111 4567888888766554433
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=1.5e-10 Score=100.73 Aligned_cols=170 Identities=18% Similarity=0.090 Sum_probs=88.8
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM 243 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L 243 (347)
++|++|+++++.+.... ....+++|++|+|+++.++.- ...++.++++|+.|++.++.. ..+ .+..+++|+.|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEE
Confidence 45677777766654332 345666777777766655211 112245566777777766542 221 22345667777
Q ss_pred Eccccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCC
Q 019031 244 EIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL 321 (347)
Q Consensus 244 ~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 321 (347)
.+.++. ..+. .....+++|++|+++++.........+..+++|+.|++.++.++... ...+..+++|+.|+++++..
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcC
Confidence 776664 1111 11235566777777644333222222455667777777666554321 12244566777777766532
Q ss_pred ch---hhhccCcccceEeccccc
Q 019031 322 PG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 322 ~~---~~~~~~~~L~~L~l~~c~ 341 (347)
.. ......++|+.|++.+++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCHHHhccccCCCEEEecCCC
Confidence 21 112345566677666544
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=8e-11 Score=100.46 Aligned_cols=194 Identities=16% Similarity=0.074 Sum_probs=114.3
Q ss_pred CceEEEeeeecCCcccccccc-cccccccccEEEEeeee-ccCCC--CcCCCCCcCEEEeee-eeeChHHHHHHHhcCCC
Q 019031 143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPL 217 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~cp~ 217 (347)
++++|+ +.... ...++. .+..+++|++|+++++. +.... ...++++|++|++++ +.+..-. ...+.++++
T Consensus 32 ~l~~L~--l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLK--LIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL 106 (239)
T ss_dssp TCCEEE--EESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred cccEEE--EeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence 677777 54322 223333 34457888888888885 53222 356788888888887 5553111 122557888
Q ss_pred ccEEEeeccCCCCccccccCCCce---EEEcccc-c-cchhh-hhhcCCCcc-EEEeeeeCCCCCceeeccCCCCCcEEE
Q 019031 218 LEDLCFSNCWGLKHLCVSKASKLK---IMEIRSF-S-EEIEI-VEISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKLD 290 (347)
Q Consensus 218 Le~L~l~~c~~~~~~~~~~~~~L~---~L~l~~~-~-~~~~~-~~~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~ 290 (347)
|+.|++.+|....--.+..+++|+ .|+++++ . ..+.. ....+++|+ .|+++++.........+.. ++|+.|+
T Consensus 107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 888888887532211234455666 8888887 3 22222 123578888 8888754442111112233 7888899
Q ss_pred eeccc-cCchHHHHHHccC-CCCCEEeecCcCCchhhhccCcccceEecccccCc
Q 019031 291 LVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYL 343 (347)
Q Consensus 291 L~~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~l 343 (347)
+.++. ++.- ....+..+ ++|+.|+++++.....-...+++|+.|.+.++..|
T Consensus 186 L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 186 LNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred cCCCCCcccC-CHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence 88773 6531 12345667 88999999886433211225778999988877653
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.11 E-value=3.4e-11 Score=107.07 Aligned_cols=174 Identities=18% Similarity=0.118 Sum_probs=117.2
Q ss_pred ccccccEEEEeeeeccCCC--Cc--CCCCCcCEEEeeeeeeChH--HHHHHHh-cCCCccEEEeeccCCCCc--cccccC
Q 019031 167 SANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKH--LCVSKA 237 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~~i~~-~cp~Le~L~l~~c~~~~~--~~~~~~ 237 (347)
.+++|++|++++|.+.... .. ..+++|++|+|+++.++.. .+..+.. ..++|+.|++.++..... -.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5789999999999876422 22 7889999999999988432 2333211 138999999998864322 235567
Q ss_pred CCceEEEccccc-cch----hhhh-hcCCCccEEEeeeeCCCCCce---eeccCCCCCcEEEeeccccCchHHHHHHccC
Q 019031 238 SKLKIMEIRSFS-EEI----EIVE-ISVPSLQQLTLLFYGARRPRV---VEVARSPHLKKLDLVSVYFADNEFNHLISKF 308 (347)
Q Consensus 238 ~~L~~L~l~~~~-~~~----~~~~-~~~p~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 308 (347)
++|+.|+++++. .+. ..+. ..+++|++|+++++....... ..+..+++|+.|+++++.+++......+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 899999999885 111 1111 467899999998655532111 1235679999999998888763311233457
Q ss_pred CCCCEEeecCcCCchhhhc-cCcccceEeccccc
Q 019031 309 PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK 341 (347)
Q Consensus 309 ~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~ 341 (347)
++|+.|+++++... .+.. ..++|+.|+++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNR 285 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSC
T ss_pred CCCCEEECCCCccC-hhhhhccCCceEEECCCCC
Confidence 89999999987533 3322 12689999998764
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.11 E-value=3.4e-11 Score=107.38 Aligned_cols=198 Identities=19% Similarity=0.113 Sum_probs=137.3
Q ss_pred HHHHHHHHHHH--cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHH
Q 019031 131 IVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMV 208 (347)
Q Consensus 131 ~~~~~i~~~~~--~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l 208 (347)
.+...+..... +++++|+ +..+... ...+..+..+++|++|++++|.+........+++|++|+++++.++.
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEE--CTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred chhhhHHHHhccCCCCCEEE--CcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence 45555544433 5899999 6543222 12233456689999999999887543346789999999999998742
Q ss_pred HHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceee-ccCCCC
Q 019031 209 QKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVE-VARSPH 285 (347)
Q Consensus 209 ~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~ 285 (347)
+..+++|+.|++.+|. +..+....+++|+.|+++++. ..+.. ....+++|+.|+++++......... ...+++
T Consensus 95 ---l~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---EEECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---ccCCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 2246999999999886 444455557899999999986 22222 2236799999999865543322222 246899
Q ss_pred CcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--hhhccCcccceEeccccc
Q 019031 286 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 286 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~ 341 (347)
|+.|+++++.++.. . ....+++|+.|+++++.... ......++|+.|+++++.
T Consensus 171 L~~L~L~~N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 171 LEHLNLQYNFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CCEEECTTSCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred CCEEECCCCcCccc--c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 99999999888753 1 12248999999999984322 224466899999998874
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.10 E-value=4.7e-10 Score=107.45 Aligned_cols=174 Identities=16% Similarity=0.069 Sum_probs=112.4
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE 219 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le 219 (347)
.++++|+ +..+.. ....+..+..+++|++|++++|.+.... ....+++|++|+|+++.+..... ..+.++++|+
T Consensus 26 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLD--LSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK 101 (549)
T ss_dssp TTCCEEE--CCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred CCccEEE--CcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence 4678888 544321 1222344566788999999988765332 45678899999999888743222 2357789999
Q ss_pred EEEeeccCCCC-c--cccccCCCceEEEccccc--cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031 220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS 293 (347)
Q Consensus 220 ~L~l~~c~~~~-~--~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 293 (347)
.|++.+|.... . -.+..+++|+.|+++++. ..+. .....+++|++|+++++.........++.+++|++|++..
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 99998885422 1 234567889999998875 1222 1223678889998886555433334456778888888877
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcC
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+..... ...++..+++|+.|+++++.
T Consensus 182 n~~~~~-~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 182 SESAFL-LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp SBSTTH-HHHHHHSTTTBSEEEEESCB
T ss_pred Cccccc-chhhHhhcccccEEEccCCc
Confidence 665432 22334567888888887763
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.08 E-value=4.3e-10 Score=109.77 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=86.7
Q ss_pred CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc----------cCCCceEEEccccc-cchhhhhh
Q 019031 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI 257 (347)
Q Consensus 189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~----------~~~~L~~L~l~~~~-~~~~~~~~ 257 (347)
.+++|++|+|+++.++ .....++..+++|+.|++.+|... .+... .+++|+.|+++++. ..+.....
T Consensus 431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 3456777777776663 111234456777777777776532 22211 11278888888775 22222222
Q ss_pred --cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec------cccCchHHHHHHccCCCCCEEeecCcCCchhhhc-c
Q 019031 258 --SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-S 328 (347)
Q Consensus 258 --~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~ 328 (347)
.+++|+.|+++++.... .+..+..+++|+.|++++ +.+... +...+..+++|+.|++++|.. ..+.. .
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 66788888887554443 444556778888888843 333322 233445678888888887754 33322 3
Q ss_pred CcccceEecccccC
Q 019031 329 SNQLKNLLFRSCKY 342 (347)
Q Consensus 329 ~~~L~~L~l~~c~~ 342 (347)
.++|+.|+|++++.
T Consensus 586 ~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 586 TPNISVLDIKDNPN 599 (636)
T ss_dssp CTTCCEEECCSCTT
T ss_pred hCcCCEEECcCCCC
Confidence 36788888877753
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.08 E-value=2.7e-10 Score=109.57 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=62.3
Q ss_pred cCCCccEEEeeccCCCCc----cccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCc-eeeccCCCCCc
Q 019031 214 ECPLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLK 287 (347)
Q Consensus 214 ~cp~Le~L~l~~c~~~~~----~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 287 (347)
.+|+|+.|++.+|..... ..+.++++|+.|++++|. ..+......+++|++|+++++...... ...+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 455555555554432111 112234555566555553 111111224556666666532221111 12245566777
Q ss_pred EEEeeccccCchHHHHHHccCCCCCEEeecCcCCc----hhhhccCcccceEeccccc
Q 019031 288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 288 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~----~~~~~~~~~L~~L~l~~c~ 341 (347)
.|+++++.+... ....+..+++|+.|++++|... ......+++|+.|++++|.
T Consensus 425 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 425 YLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp EEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 777766554432 2234456777777777776432 1223356778888777664
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.07 E-value=1.9e-10 Score=101.12 Aligned_cols=145 Identities=19% Similarity=0.156 Sum_probs=56.1
Q ss_pred cccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEc
Q 019031 170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEI 245 (347)
Q Consensus 170 ~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l 245 (347)
+++.|+++++.+.... ....+++|++|+|+++.++.-.. ...+++|+.|++.++.. ..+ .+..+++|+.|.+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEEC
Confidence 4455555544432211 23344555555555444421100 13444555555544432 111 1123445555555
Q ss_pred cccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 246 RSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 246 ~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+++. ..+. .....+++|+.|.++++.........+..+++|+.|+++++.++.- ....+..+++|+.|+++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCC
Confidence 5443 1111 1112344555555543322211111223445555555544444321 1122334455555555544
No 75
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.07 E-value=1.7e-10 Score=112.70 Aligned_cols=133 Identities=10% Similarity=0.024 Sum_probs=82.7
Q ss_pred cccccc--ccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeee-eChHHHHHHHh------cCCCccEEEeeccCCC
Q 019031 161 LPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLAS------ECPLLEDLCFSNCWGL 229 (347)
Q Consensus 161 l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~------~cp~Le~L~l~~c~~~ 229 (347)
+|..+. .+++|++|++++|.+... .....+++|++|+++++. +++..+..-+. .+++|+.|++.+|...
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 899999999999975432 256789999999999998 66523333233 3588999999888643
Q ss_pred Ccc----ccccCCCceEEEccccc-c-chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCC-CcEEEeecccc
Q 019031 230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYF 296 (347)
Q Consensus 230 ~~~----~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~ 296 (347)
.+ .+..+++|+.|+++++. . .+. ....+++|+.|.++++... ..+..+..+++ |+.|+++++.+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 32 34567788888888775 1 222 1124456666666532221 11112233444 55555544443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.07 E-value=2.1e-10 Score=100.92 Aligned_cols=174 Identities=14% Similarity=0.068 Sum_probs=121.3
Q ss_pred ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
+..+++++.+++.++.+...+ ..-.++++.|+|+++.++.-.. ..+.++++|+.|++.++....-.....+++|+.|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip-~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCC-CCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 345678999999988766432 2334789999999998843221 23678999999999988642222224679999999
Q ss_pred ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031 245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (347)
Q Consensus 245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 323 (347)
++++. ..+......+++|+.|.++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|+++++....
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCc
Confidence 99986 33333334789999999996655443334567899999999998887742 23445678999999999874321
Q ss_pred ---hhhccCcccceEeccccc
Q 019031 324 ---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 324 ---~~~~~~~~L~~L~l~~c~ 341 (347)
.+....++|+.|+++++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHhcCcCCCCEEECCCCc
Confidence 223345677777776543
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.05 E-value=1.7e-10 Score=103.38 Aligned_cols=194 Identities=10% Similarity=0.017 Sum_probs=101.4
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+.. ....+..+..+++|++|+++++.+...+ ...+++|++|+++++.+..-. ...+.++++|+.|
T Consensus 78 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L 152 (332)
T 2ft3_A 78 QHLYALV--LVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCI 152 (332)
T ss_dssp TTCCEEE--CCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCC-SSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEE
T ss_pred CCCcEEE--CCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccC-ccccccCCEEECCCCccCccC-HhHhCCCccCCEE
Confidence 3566666 433211 1112334445667777777776654322 122366777777766652111 1224566777777
Q ss_pred EeeccCCCC----cccccc--------------------CCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeCCCCC
Q 019031 222 CFSNCWGLK----HLCVSK--------------------ASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRP 275 (347)
Q Consensus 222 ~l~~c~~~~----~~~~~~--------------------~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~ 275 (347)
++.++.... ...+.. .++|+.|+++++. .... .....+++|+.|+++++.....
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 776654310 001111 1456666666654 1111 1122556777777765444332
Q ss_pred ceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hh-----ccCcccceEecccccC
Q 019031 276 RVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IK-----ISSNQLKNLLFRSCKY 342 (347)
Q Consensus 276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~-----~~~~~L~~L~l~~c~~ 342 (347)
....+..+++|+.|+++++.++. +...+..+++|+.|+++++..... +. ...+.|+.|++.+++.
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHhhCCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 22235667788888887777663 333356678888888877632211 10 1145677888777653
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.05 E-value=1.1e-10 Score=105.96 Aligned_cols=196 Identities=11% Similarity=0.043 Sum_probs=123.1
Q ss_pred CceEEEeeeecCCcccccccccccc-----cccccEEEEeeeeccCCC------CcCCC-CCcCEEEeeeeeeChHH---
Q 019031 143 GVRELDFENITDENTVYTLPQAIFS-----ANSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQM--- 207 (347)
Q Consensus 143 ~l~~L~~~l~~~~~~~~~l~~~~~~-----~~~L~~L~L~~~~l~~~~------~~~~~-~~L~~L~L~~~~~~~~~--- 207 (347)
++++|+ +..+.-... .+..+.. +++|++|+|++|.+.... ....+ ++|++|+|+++.+++..
T Consensus 52 ~L~~L~--Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLN--LSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEE--CCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEE--CcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 799999 654322221 1212222 288999999999876543 13344 79999999999884443
Q ss_pred HHHHHhc-CCCccEEEeeccCCCC----cc--ccccCC-CceEEEccccc-c--chh---hhhhcC-CCccEEEeeeeCC
Q 019031 208 VQKLASE-CPLLEDLCFSNCWGLK----HL--CVSKAS-KLKIMEIRSFS-E--EIE---IVEISV-PSLQQLTLLFYGA 272 (347)
Q Consensus 208 l~~i~~~-cp~Le~L~l~~c~~~~----~~--~~~~~~-~L~~L~l~~~~-~--~~~---~~~~~~-p~L~~L~l~~~~~ 272 (347)
+...+.. +++|++|++.+|.... .+ .+...+ +|+.|++++|. . ... ...... ++|++|+++++..
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 3343444 5699999999885321 11 112334 89999999986 1 111 112234 5999999986554
Q ss_pred CCCc----eeeccC-CCCCcEEEeeccccCch---HHHHHHccCCCCCEEeecCcC---C----chhhh---ccCcccce
Q 019031 273 RRPR----VVEVAR-SPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCC---L----PGKIK---ISSNQLKN 334 (347)
Q Consensus 273 ~~~~----~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~---~----~~~~~---~~~~~L~~ 334 (347)
.... ...+.. .++|+.|+++++.+++. .+..++..+++|+.|++++|. . ...+. ...++|+.
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~ 288 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence 3311 111223 46999999999988874 345556778999999999874 1 11222 24557778
Q ss_pred Eeccccc
Q 019031 335 LLFRSCK 341 (347)
Q Consensus 335 L~l~~c~ 341 (347)
|++++..
T Consensus 289 LdL~~N~ 295 (362)
T 3goz_A 289 VDKNGKE 295 (362)
T ss_dssp ECTTSCB
T ss_pred EecCCCc
Confidence 8887654
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=3.9e-10 Score=113.06 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=99.3
Q ss_pred cCceEEEeeeecCCcccc----------------ccccccc--ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeee
Q 019031 142 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERV 201 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~ 201 (347)
.+++.|+ +..+.-... .+|..+. .+++|++|+|++|.+.... ....+++|+.|+|+++
T Consensus 448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 5889999 554332221 2777776 8899999999998754322 4678999999999999
Q ss_pred e-eChHHHHHHH-------hcCCCccEEEeeccCCCCcc----ccccCCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031 202 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL 268 (347)
Q Consensus 202 ~-~~~~~l~~i~-------~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~ 268 (347)
. ++...+..-+ ..+|+|+.|++.+|... .+ .+..+++|+.|+++++. ..+. ....+++|+.|.++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 7 6652222222 34569999999988643 33 24567888899888875 2222 12356788888887
Q ss_pred eeCCCCCceeeccCCCC-CcEEEeeccccC
Q 019031 269 FYGARRPRVVEVARSPH-LKKLDLVSVYFA 297 (347)
Q Consensus 269 ~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~ 297 (347)
.+... ..+..+..+++ |+.|+++++.++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 54443 23333455666 777777666554
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=5.1e-10 Score=106.51 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=80.9
Q ss_pred CCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--cc--ccccCCCceEEEccccc-cc-hhh-hhhcCC
Q 019031 188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HL--CVSKASKLKIMEIRSFS-EE-IEI-VEISVP 260 (347)
Q Consensus 188 ~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~--~~~~~~~L~~L~l~~~~-~~-~~~-~~~~~p 260 (347)
..+++|++|+++++.+++.... .+..+++|+.|++.+|.... .+ .+..+++|+.|+++++. .. +.. ....++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5666777777777766432221 23566777777777665322 11 13456677777777665 11 111 122456
Q ss_pred CccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--h-hhccCcccceEec
Q 019031 261 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K-IKISSNQLKNLLF 337 (347)
Q Consensus 261 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~-~~~~~~~L~~L~l 337 (347)
+|++|+++++.........+ .++|+.|+++++.++. +...+..+++|+.|++++|.... . .....++|+.|++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhh--cccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 77777776443322111111 1577777777666652 33333367777777777763221 1 1234567777777
Q ss_pred ccccCc
Q 019031 338 RSCKYL 343 (347)
Q Consensus 338 ~~c~~l 343 (347)
++++.-
T Consensus 476 ~~N~~~ 481 (520)
T 2z7x_B 476 HTNPWD 481 (520)
T ss_dssp CSSCBC
T ss_pred cCCCCc
Confidence 766543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.04 E-value=3.6e-10 Score=97.18 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=77.9
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~ 244 (347)
++|+.|+++++.+.... ....+++|++|+|+++.+.... ...+..+++|+.|++.++..... -.+..+++|+.|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 45666777666654332 2455666777777666652211 12245566677777766543211 1223456677777
Q ss_pred ccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++++. ..+.. ....+++|+.|+++.+.........++.+++|+.|+++++.++.. ....+..+++|+.|+++++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCC
Confidence 76664 11111 112456677777664443322222345566677777766665532 1123445666777777654
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.3e-09 Score=109.39 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=90.6
Q ss_pred CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc----------cCCCceEEEccccc-cchhhhhh--
Q 019031 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI-- 257 (347)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~----------~~~~L~~L~l~~~~-~~~~~~~~-- 257 (347)
++|+.|+|+++.+. ..-..++..+++|+.|++.+|.. ..+... ++++|+.|++++|. ..+.....
T Consensus 673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 36777777776663 11223445678888888877743 222211 12378888888876 22222222
Q ss_pred cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec------cccCchHHHHHHccCCCCCEEeecCcCCchhhhc-cCc
Q 019031 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSN 330 (347)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~ 330 (347)
.+|+|+.|+++++.... .+..+..+++|+.|+|++ +.+... ++..+..+++|+.|++++|.. ..+.. .++
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~ 827 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTP 827 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCS
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcC
Confidence 67888888888555433 344566788888888855 333322 233456688888888888755 43332 346
Q ss_pred ccceEecccccC
Q 019031 331 QLKNLLFRSCKY 342 (347)
Q Consensus 331 ~L~~L~l~~c~~ 342 (347)
+|+.|+|++++.
T Consensus 828 ~L~~LdLs~N~l 839 (876)
T 4ecn_A 828 QLYILDIADNPN 839 (876)
T ss_dssp SSCEEECCSCTT
T ss_pred CCCEEECCCCCC
Confidence 888888888764
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.02 E-value=6e-10 Score=95.75 Aligned_cols=171 Identities=13% Similarity=0.002 Sum_probs=119.9
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEEcc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIR 246 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~ 246 (347)
.+.+.++++++.+...+ ..-.++|++|+|+++.+..... ..+.++++|+.|++.++..... -.+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccC-CCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 56788888887766433 2233789999999998832221 2367899999999999854321 224567999999999
Q ss_pred ccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-
Q 019031 247 SFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG- 323 (347)
Q Consensus 247 ~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~- 323 (347)
++. ..+. .....+++|++|+++++.........+..+++|+.|+++++.++.. ....+..+++|+.|+++++....
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCcCCcc
Confidence 986 2221 2224679999999996655433333357799999999999888742 12345678999999999984322
Q ss_pred --hhhccCcccceEecccccC
Q 019031 324 --KIKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 324 --~~~~~~~~L~~L~l~~c~~ 342 (347)
......++|+.|++.+++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 2344668999999987664
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=3.8e-09 Score=100.48 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=123.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccC--CCCcCCCCCcCEEEeeeeeeCh-HHHHHHHhcCCCc
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL 218 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~cp~L 218 (347)
.+++.|+ +..+....... ...+++|++|++++|.+.. +.....+++|++|+++++.+.. ..+...+..+++|
T Consensus 302 ~~L~~L~--l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 302 MNIKNFT--VSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp CCCSEEE--EESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred CceeEEE--cCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence 5688888 54432222111 1357899999999998765 2356789999999999999953 4555667899999
Q ss_pred cEEEeeccCCCCccc---cccCCCceEEEccccccchhhhhhcC-CCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031 219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV 294 (347)
Q Consensus 219 e~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 294 (347)
+.|++++|.....+. +..+++|+.|++++|. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence 999999987543233 3457899999999986 212233333 79999999966554 33333458999999999999
Q ss_pred ccCchHHHH-HHccCCCCCEEeecCcC
Q 019031 295 YFADNEFNH-LISKFPSLEDLFVTRCC 320 (347)
Q Consensus 295 ~~~~~~~~~-~~~~~~~L~~L~l~~c~ 320 (347)
.++. +.. .+..+++|+.|++++++
T Consensus 455 ~l~~--l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 455 QLKS--VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred cCCc--cCHHHhccCCcccEEECcCCC
Confidence 8874 222 46779999999999864
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.99 E-value=7.6e-10 Score=111.54 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=16.7
Q ss_pred ccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee
Q 019031 167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL 203 (347)
Q Consensus 167 ~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~ 203 (347)
.+++|++|+|++|.+.... ...++++|++|+|+++.+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 3445555555554433211 234455555555555443
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=1.7e-09 Score=94.26 Aligned_cols=171 Identities=16% Similarity=0.072 Sum_probs=117.1
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~ 244 (347)
++|++|+++++.+.... ....+++|++|+++++.+..-.. ..+.++++|+.|++.++..... -.+..+++|+.|.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 57999999998865432 46789999999999997732211 2356799999999998864221 2355679999999
Q ss_pred ccccc-cchhh-hhhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEEeeccccCch---HHHHHHccCCCCC-EEeec
Q 019031 245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLE-DLFVT 317 (347)
Q Consensus 245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~-~L~l~ 317 (347)
+.++. ..+.. ....+++|++|+++.+.... .....+..+++|+.|+++++.++.. .+. .+..++.|. .|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceeeecC
Confidence 99886 22222 12367999999999655533 2344567899999999998887652 222 233445554 78898
Q ss_pred CcCCchh--hhccCcccceEeccccc
Q 019031 318 RCCLPGK--IKISSNQLKNLLFRSCK 341 (347)
Q Consensus 318 ~c~~~~~--~~~~~~~L~~L~l~~c~ 341 (347)
++..... ......+|+.|+++++.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred CCcccccCccccCCCcccEEECCCCc
Confidence 8743221 12233479999988765
No 87
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.98 E-value=3e-10 Score=72.50 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=34.0
Q ss_pred ccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhc
Q 019031 16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV 55 (347)
Q Consensus 16 ~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~ 55 (347)
+.+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999997654
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.98 E-value=1.5e-09 Score=98.59 Aligned_cols=197 Identities=18% Similarity=0.138 Sum_probs=129.1
Q ss_pred cCceEEEeeeecCCccccc---ccccccccc-cccEEEEeeeeccCCC--CcCC-----CCCcCEEEeeeeeeC---hHH
Q 019031 142 NGVRELDFENITDENTVYT---LPQAIFSAN-SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLD---EQM 207 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~---l~~~~~~~~-~L~~L~L~~~~l~~~~--~~~~-----~~~L~~L~L~~~~~~---~~~ 207 (347)
.++++|+ +..+.-.... +...+..++ +|++|+|++|.+.... .... +++|++|+|+++.++ ...
T Consensus 22 ~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 4599999 6543322211 113334566 8999999999877543 1122 499999999999883 344
Q ss_pred HHHHHhcC-CCccEEEeeccCCCCccc-------ccc-CCCceEEEccccc-c--chhhh---hhcCC-CccEEEeeeeC
Q 019031 208 VQKLASEC-PLLEDLCFSNCWGLKHLC-------VSK-ASKLKIMEIRSFS-E--EIEIV---EISVP-SLQQLTLLFYG 271 (347)
Q Consensus 208 l~~i~~~c-p~Le~L~l~~c~~~~~~~-------~~~-~~~L~~L~l~~~~-~--~~~~~---~~~~p-~L~~L~l~~~~ 271 (347)
+...+..+ ++|+.|++.+|.. .... +.. .++|+.|++++|. . ....+ ....+ +|++|+++++.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 55556666 8999999999864 3222 112 2599999999986 1 11122 12444 99999999655
Q ss_pred CCCCcee----eccCC-CCCcEEEeeccccCchHH---HHHHcc-CCCCCEEeecCcCCch-------hhhccCcccceE
Q 019031 272 ARRPRVV----EVARS-PHLKKLDLVSVYFADNEF---NHLISK-FPSLEDLFVTRCCLPG-------KIKISSNQLKNL 335 (347)
Q Consensus 272 ~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~~---~~~~~~-~~~L~~L~l~~c~~~~-------~~~~~~~~L~~L 335 (347)
....... .+..+ ++|+.|+++++.+.+... ...+.. .++|+.|++++|.... ......++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 5332221 23445 599999999998876433 333333 4699999999984322 223456899999
Q ss_pred eccccc
Q 019031 336 LFRSCK 341 (347)
Q Consensus 336 ~l~~c~ 341 (347)
++++|.
T Consensus 259 ~L~~n~ 264 (362)
T 3goz_A 259 YLDYDI 264 (362)
T ss_dssp EEEHHH
T ss_pred EeccCC
Confidence 998875
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.97 E-value=9.1e-10 Score=95.37 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=70.2
Q ss_pred cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccc
Q 019031 168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~ 247 (347)
+++|++|++++|.+........+++|++|+|+++.+++-. . +..+++|+.|++.+|....--.+.. ++|+.|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccC
Confidence 4555555555555443323445556666666655552111 1 4555666666665553221111222 5566666665
Q ss_pred cc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+. ..+.. ...+++|+.|+++.+...... .+..+++|+.|+++++.+++. ..+..+++|+.|+++++
T Consensus 116 N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 116 NELRDTDS-LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SCCSBSGG-GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred CccCCChh-hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 54 11111 124556666666533332211 345566666666666665553 33445666666666654
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.97 E-value=4.7e-10 Score=90.17 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=67.0
Q ss_pred ccccEEEEeeeecc--CCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031 169 NSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (347)
Q Consensus 169 ~~L~~L~L~~~~l~--~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l 245 (347)
++|++|++++|.+. ... ....+++|++|+++++.+... ..+..+++|+.|++.+|....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~--------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFG--------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCch---------------
Confidence 45666666666554 111 224455555555555544221 223344444444444443211
Q ss_pred cccccchhhhhhcCCCccEEEeeeeCCCCC-ceeeccCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeecCcC
Q 019031 246 RSFSEEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 246 ~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~ 320 (347)
.+......+|+|+.|+++++..... ....+..+++|+.|+++++.++.... ...+..+|+|+.|++.+|.
T Consensus 86 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 86 -----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 0122222355666666654433221 11345677888888888777654321 2466778888888888764
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.97 E-value=4.3e-10 Score=100.77 Aligned_cols=193 Identities=13% Similarity=0.039 Sum_probs=109.6
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChH-HHHHHHhc----
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASE---- 214 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~---- 214 (347)
.++++|+ +..+. ...+|..++ ++|++|+++++.+.... ....+++|++|+++++.++.. .....+..
T Consensus 102 ~~L~~L~--L~~n~--l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~ 175 (332)
T 2ft3_A 102 RKLQKLY--ISKNH--LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175 (332)
T ss_dssp TTCCEEE--CCSSC--CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCS
T ss_pred CCCCEEE--CCCCc--CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccC
Confidence 4666666 43221 113333332 56666666666544322 234566666666666554211 10111111
Q ss_pred ----------------CCCccEEEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCC
Q 019031 215 ----------------CPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR 274 (347)
Q Consensus 215 ----------------cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~ 274 (347)
.++|++|++.++..... ..+..+++|+.|+++++. ..+.. ....+++|++|+++++...
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred EEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 24666666666542211 234567899999999986 22221 2347899999999965553
Q ss_pred CceeeccCCCCCcEEEeeccccCchHHHHHHc-----cCCCCCEEeecCcCCch-----hhhccCcccceEeccccc
Q 019031 275 PRVVEVARSPHLKKLDLVSVYFADNEFNHLIS-----KFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~~~-----~~~~~~~~L~~L~l~~c~ 341 (347)
..+..+..+++|+.|+++++.++......+.. ..++|+.|++.+++... .....+++|+.+++.+++
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 33334678999999999988887532222211 25789999999986431 223456788888888765
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.96 E-value=1.7e-09 Score=92.19 Aligned_cols=169 Identities=11% Similarity=0.005 Sum_probs=116.0
Q ss_pred cCceEEEeeeecCCcccccccc-cccccccccEEEEee-eeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031 142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~ 217 (347)
.+++.|+ +..+. ....++. .+..+++|++|++++ +.+.... ...++++|++|+++++.+.. +.. +..+++
T Consensus 55 ~~L~~L~--l~~n~-~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~ 128 (239)
T 2xwt_C 55 PNISRIY--VSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYS 128 (239)
T ss_dssp TTCCEEE--EECCS-SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCB
T ss_pred CCCcEEe--CCCCC-CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccc
Confidence 5889999 55432 0223333 345689999999998 6654322 45689999999999998843 223 677888
Q ss_pred cc---EEEeeccCCCCccc---cccCCCce-EEEccccc-cchhhhhhcCCCccEEEeeeeC-CCCCceeeccCC-CCCc
Q 019031 218 LE---DLCFSNCWGLKHLC---VSKASKLK-IMEIRSFS-EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARS-PHLK 287 (347)
Q Consensus 218 Le---~L~l~~c~~~~~~~---~~~~~~L~-~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~-~~L~ 287 (347)
|+ .|++.++..+..+. +.++++|+ .|+++++. ..+.......++|+.|.++++. ........+..+ ++|+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 98 99999984454433 45678999 99999875 2222222344789999998552 322222345677 9999
Q ss_pred EEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 288 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
.|+++++.++.- .. ..+++|+.|.+.++.
T Consensus 209 ~L~l~~N~l~~l--~~--~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQTSVTAL--PS--KGLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCCCCCC--CC--TTCTTCSEEECTTC-
T ss_pred EEECCCCccccC--Ch--hHhccCceeeccCcc
Confidence 999998887642 11 258999999998863
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.96 E-value=4e-10 Score=100.05 Aligned_cols=172 Identities=16% Similarity=0.115 Sum_probs=118.3
Q ss_pred cccccEEEEeeeeccCCC--Cc--CCCCCcCEEEeeeeeeChH--HHH-HHHhcCCCccEEEeeccCCCCc--cccccCC
Q 019031 168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQ-KLASECPLLEDLCFSNCWGLKH--LCVSKAS 238 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~-~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~ 238 (347)
.++|++|++++|.+.... .. ..+++|++|+|+++.++.. .+. .-+..+++|+.|++.+|..... ..+.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 467999999999876433 22 7799999999999998431 111 1234799999999999865322 2344679
Q ss_pred CceEEEccccc-cc---hhhh--hhcCCCccEEEeeeeCCCCCcee---eccCCCCCcEEEeeccccCchHHHHHHccC-
Q 019031 239 KLKIMEIRSFS-EE---IEIV--EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEFNHLISKF- 308 (347)
Q Consensus 239 ~L~~L~l~~~~-~~---~~~~--~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~- 308 (347)
+|+.|+++++. .. +... ...+|+|++|.++++........ .++.+++|++|+++++.+.+..... +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence 99999999985 11 1111 13679999999996655321111 2467899999999998887632111 2233
Q ss_pred --CCCCEEeecCcCCchhhhc-cCcccceEeccccc
Q 019031 309 --PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK 341 (347)
Q Consensus 309 --~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~ 341 (347)
++|++|+++++... .+.. .+++|+.|+++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc
Confidence 79999999987433 2322 24799999998764
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.95 E-value=3.1e-10 Score=98.34 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=118.1
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~ 248 (347)
+++..+++.++.+........+++|++|+++++.+..- . -+..+++|+.|++.+|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 44555666665554333456789999999999988322 1 26789999999999986433333677899999999998
Q ss_pred c-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhh
Q 019031 249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIK 326 (347)
Q Consensus 249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~ 326 (347)
. ..+..+.. ++|+.|+++++..... -.+..+++|+.|+++++.+++. ..+..+++|+.|+++++.... ...
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l 168 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGL 168 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTS
T ss_pred ccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHh
Confidence 6 22222222 8999999996655443 2467899999999999998874 246789999999999984322 233
Q ss_pred ccCcccceEeccccc
Q 019031 327 ISSNQLKNLLFRSCK 341 (347)
Q Consensus 327 ~~~~~L~~L~l~~c~ 341 (347)
..+++|+.|++++++
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 467889999987754
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.93 E-value=5.2e-09 Score=102.86 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=68.0
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~ 244 (347)
+++++|+++++.+.... ....+++|++|+|+++.+.... ...+.++++|+.|++.+|.... ...+.++++|+.|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 45566666655543322 2345556666666555542111 1123445666666665553211 11233455666666
Q ss_pred ccccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHH-HccCCCCCEEeecCc
Q 019031 245 IRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL-ISKFPSLEDLFVTRC 319 (347)
Q Consensus 245 l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~l~~c 319 (347)
+.++. ..+. .....+++|++|+++.+.........+..+++|+.|++.++.++......+ ...+++|+.|+++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 66553 1111 111245556666665433322222233455666666665555443222211 113455666666554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=1.3e-09 Score=90.83 Aligned_cols=142 Identities=18% Similarity=0.009 Sum_probs=88.9
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~ 244 (347)
++|++|+++++.+.... ....+++|++|+++++.+..- ....+..+++|+.|++.++..... ..+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 57888888888765433 245788888888888877321 122356788888888887753211 1234567888888
Q ss_pred ccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++++. ..+.. ....+++|++|+++.+.........+..+++|+.|++.++.+.. .+++|+.|.+..+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n 175 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWIN 175 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHH
Confidence 88775 11111 12356788888887544433222235667888888887775542 3566666666554
No 97
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=3e-10 Score=89.44 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=21.0
Q ss_pred ccCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeec
Q 019031 280 VARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVT 317 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~ 317 (347)
+..+++|+.|+++++.+++... ...+..+|+|+.|+++
T Consensus 109 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4556666666666665543211 2345556666666654
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.93 E-value=1.2e-08 Score=97.98 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=6.5
Q ss_pred cCcccceEecccc
Q 019031 328 SSNQLKNLLFRSC 340 (347)
Q Consensus 328 ~~~~L~~L~l~~c 340 (347)
..++|+.|+++++
T Consensus 471 ~l~~L~~L~L~~N 483 (562)
T 3a79_B 471 HLQALQELNVASN 483 (562)
T ss_dssp SSCCCSEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3445555555443
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.92 E-value=9.5e-10 Score=110.85 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.3
Q ss_pred CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031 284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK 341 (347)
Q Consensus 284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~ 341 (347)
++|+.|+++++.+... ....+..+++|+.|+++++.... ......++|+.|+++++.
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 5778888876666542 12345667888888888774322 223456788888887764
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.89 E-value=1.2e-08 Score=95.34 Aligned_cols=137 Identities=18% Similarity=0.075 Sum_probs=54.8
Q ss_pred cccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031 166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI 245 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l 245 (347)
..+++|++|+++++.+... ....++|++|+++++.+.. +.. +.++++|+.|++.+|... .+... .++|+.|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~l--p~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~-~l~~~-~~~L~~L~l 222 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLK-KLPDL-PLSLESIVA 222 (454)
T ss_dssp TTCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-SCCCC-CTTCCEEEC
T ss_pred CCCCCCCEEECCCCcCccc--CCCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCC-cCCCC-cCcccEEEC
Confidence 3344455555544443321 1122345555555444421 111 344455555555444321 11110 134555555
Q ss_pred cccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 246 ~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++|. ..+.. ...+++|++|+++++.... .. ..+++|+.|+++++.+.. +....++|+.|++++|
T Consensus 223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 223 GNNILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN 287 (454)
T ss_dssp CSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred cCCcCCcccc-cCCCCCCCEEECCCCcCCc-cc---ccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence 5543 11111 1144555555555322211 00 123455555555544432 1112355666666554
No 101
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=4.3e-09 Score=95.19 Aligned_cols=134 Identities=20% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc---cchhhhhh-cCCCccEEEeeeeCC---CCC-c--
Q 019031 207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFYGA---RRP-R-- 276 (347)
Q Consensus 207 ~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~-~~p~L~~L~l~~~~~---~~~-~-- 276 (347)
++..++..+|+|++|.|.+|.+..-..+. .++|++|.+..|. ..+..+.. .+|+|++|.++.+.. ... .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 35567788889999998877443222232 5789999888775 22223332 678999988862110 010 1
Q ss_pred ---eeeccCCCCCcEEEeeccccCchHHHHHH--ccCCCCCEEeecCcCCch----hhh---ccCcccceEeccccc
Q 019031 277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCK 341 (347)
Q Consensus 277 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~----~~~---~~~~~L~~L~l~~c~ 341 (347)
.+....+|+|+.|++.++.+.+.....++ ..+|+|++|+|+.+.... .+. ..+++|+.|+|++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 12224578999999988777765444444 257889999998764322 121 345788889888774
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=1e-08 Score=82.25 Aligned_cols=125 Identities=21% Similarity=0.061 Sum_probs=89.2
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+......++..+..+++|+.|++++|.+........+++|++|+++++.+... +...+..+++|+.|
T Consensus 24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 5788888 65543332466666677899999999999876555567899999999999998542 44566779999999
Q ss_pred EeeccCCCCc---cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEeee
Q 019031 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLF 269 (347)
Q Consensus 222 ~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~ 269 (347)
++.+|..... ..+..+++|+.|+++++. ..... ....+|+|++|++..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 9999864321 234567889999998886 22221 223566777776664
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.85 E-value=3.6e-08 Score=95.46 Aligned_cols=171 Identities=15% Similarity=0.063 Sum_probs=91.2
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+.. ..+|. .+++|++|+|++|.+...+ ..+++|++|+|+++.++.- -...++|+.|
T Consensus 61 ~~L~~L~--L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLV--IPDNNL--TSLPA---LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTHL-----PALPSGLCKL 126 (622)
T ss_dssp TTCSEEE--ECSCCC--SCCCC---CCTTCCEEEECSCCCSCCC--CCCTTCCEEEECSCCCCCC-----CCCCTTCCEE
T ss_pred CCCcEEE--ecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCC--CCCCCCCEEECcCCcCCCC-----CCCCCCcCEE
Confidence 4666666 433221 12332 3466777777776655322 2566777777776665210 1145667777
Q ss_pred EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 301 (347)
++.+|. +..+.. .+++|+.|++++|. +..+....++|+.|.++.+.... .+ ..+++|+.|+++++.++.
T Consensus 127 ~L~~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~--- 195 (622)
T 3g06_A 127 WIFGNQ-LTSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS--- 195 (622)
T ss_dssp ECCSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC---
T ss_pred ECCCCC-CCcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC---
Confidence 776664 332222 23677777777764 33333345667777776433322 11 446788888887776654
Q ss_pred HHHHccCCCCCEEeecCcCCchhhhccCcccceEecccc
Q 019031 302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSC 340 (347)
Q Consensus 302 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c 340 (347)
+....++|+.|++++|.. ..+....++|+.|+++++
T Consensus 196 --l~~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N 231 (622)
T 3g06_A 196 --LPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGN 231 (622)
T ss_dssp --CCCCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSS
T ss_pred --CCCccchhhEEECcCCcc-cccCCCCCCCCEEEccCC
Confidence 112346677777666521 122222345555555443
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.84 E-value=8.9e-09 Score=98.63 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=52.5
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~ 248 (347)
++|++|+|++|.+...+ ..+++|++|+|+++.++. +.. +. .+|+.|++.+|.. ..+.. .+++|+.|+++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQL-TMLPE-LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCC-SCCCC-CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCcC-CCCCC-cCccccEEeCCCC
Confidence 45666666665554322 445566666666655522 111 11 1566666655532 22222 3455556655555
Q ss_pred ccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 249 ~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
. +..+....++|+.|.++++.... .+. +. ++|+.|+++++.++
T Consensus 151 ~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 151 Q--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp C--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred c--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 3 22222244555555555333322 111 22 55555555555444
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.83 E-value=6.7e-09 Score=99.85 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=79.8
Q ss_pred ccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--c--cccccCCCceEEEcc
Q 019031 171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--H--LCVSKASKLKIMEIR 246 (347)
Q Consensus 171 L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~--~~~~~~~~L~~L~l~ 246 (347)
|++|+++++.+........+++|++|+++++.+++... ..+.++++|+.|++.++.... . ..+..+++|+.|+++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 55555555544332222456666666666666543211 123556666666666654221 1 113345666666666
Q ss_pred ccc-cc-hhh-hhhcCCCccEEEeeeeCCCCCceeeccCC-CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCc
Q 019031 247 SFS-EE-IEI-VEISVPSLQQLTLLFYGARRPRVVEVARS-PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP 322 (347)
Q Consensus 247 ~~~-~~-~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 322 (347)
++. .. +.. ....+++|+.|+++.+..... .+..+ ++|+.|+++++.++. +...+..+++|+.|+++++...
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG---GGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcc---hhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCC
Confidence 654 11 111 122446666666664333211 11222 466666666665542 2222225666666666665321
Q ss_pred h--h-hhccCcccceEecccccC
Q 019031 323 G--K-IKISSNQLKNLLFRSCKY 342 (347)
Q Consensus 323 ~--~-~~~~~~~L~~L~l~~c~~ 342 (347)
. . .....++|+.|++++++.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCHHHHhcCCCCCEEEecCCCc
Confidence 1 1 123445666666665543
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=8.6e-09 Score=80.92 Aligned_cols=124 Identities=21% Similarity=0.135 Sum_probs=79.2
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.++++|+ +..+......++..+..+++|+.|++++|.+........+++|++|+++++.++.. +...+..+++|+.|
T Consensus 17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence 4677777 54433322355655566788888888888766544566788888888888887432 44556678888888
Q ss_pred EeeccCCCCc---cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEee
Q 019031 222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLL 268 (347)
Q Consensus 222 ~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~ 268 (347)
++.+|..... ..+..+++|+.|++++|. ..... ....+|+|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888763221 234557788888888775 22211 22345666666543
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=3.5e-08 Score=95.55 Aligned_cols=171 Identities=19% Similarity=0.132 Sum_probs=111.5
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+.. ..+|. ..++|++|++++|.+.... ..+++|++|+++++.++. +-...++|+.|
T Consensus 81 ~~L~~L~--Ls~N~l--~~lp~---~l~~L~~L~Ls~N~l~~l~--~~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L 146 (622)
T 3g06_A 81 PELRTLE--VSGNQL--TSLPV---LPPGLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTS-----LPVLPPGLQEL 146 (622)
T ss_dssp TTCCEEE--ECSCCC--SCCCC---CCTTCCEEEECSCCCCCCC--CCCTTCCEEECCSSCCSC-----CCCCCTTCCEE
T ss_pred CCCCEEE--cCCCcC--CcCCC---CCCCCCEEECcCCcCCCCC--CCCCCcCEEECCCCCCCc-----CCCCCCCCCEE
Confidence 6899999 654332 23443 4689999999999876543 277899999999987732 11245899999
Q ss_pred EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF 301 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 301 (347)
++.+|. +..+.. ..++|+.|.+.++. +..+...+++|+.|+++.+.... .. ..+++|+.|++.++.++.
T Consensus 147 ~Ls~N~-l~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~--- 215 (622)
T 3g06_A 147 SVSDNQ-LASLPA-LPSELCKLWAYNNQ--LTSLPMLPSGLQELSVSDNQLAS-LP---TLPSELYKLWAYNNRLTS--- 215 (622)
T ss_dssp ECCSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSS---
T ss_pred ECcCCc-CCCcCC-ccCCCCEEECCCCC--CCCCcccCCCCcEEECCCCCCCC-CC---CccchhhEEECcCCcccc---
Confidence 999885 333322 24789999999885 44455667889999998554432 11 235778888887776653
Q ss_pred HHHHccCCCCCEEeecCcCCchhhhccCcccceEecccc
Q 019031 302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSC 340 (347)
Q Consensus 302 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c 340 (347)
+...+++|+.|++++|.. ..+...+++|+.|+++++
T Consensus 216 --l~~~~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 216 --LPALPSGLKELIVSGNRL-TSLPVLPSELKELMVSGN 251 (622)
T ss_dssp --CCCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS
T ss_pred --cCCCCCCCCEEEccCCcc-CcCCCCCCcCcEEECCCC
Confidence 123356777777776622 223334455666666554
No 108
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.81 E-value=5.4e-09 Score=83.78 Aligned_cols=82 Identities=9% Similarity=0.122 Sum_probs=68.3
Q ss_pred cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeee-eChHHHHHHHhc---CCCccEEEeeccCCCCc---cccccCC
Q 019031 168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH---LCVSKAS 238 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~---cp~Le~L~l~~c~~~~~---~~~~~~~ 238 (347)
.-.|++|++++|.+...+ ...+|++|++|+|++|. +++.++..+... |++|++|+|++|..++. ..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 457999999999876554 45789999999999996 599999998763 78999999999988764 2345689
Q ss_pred CceEEEccccc
Q 019031 239 KLKIMEIRSFS 249 (347)
Q Consensus 239 ~L~~L~l~~~~ 249 (347)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999997
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.78 E-value=3e-09 Score=88.59 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=98.6
Q ss_pred cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEEEcccc
Q 019031 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF 248 (347)
Q Consensus 172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~ 248 (347)
+.++..+..+...+ ....++|++|+++++.++.- ....+..+++|+.|++.++.. ..+. +..+++|+.|+++++
T Consensus 10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCC
Confidence 34555544433322 33457899999999988421 123357899999999998853 3322 356789999999988
Q ss_pred c-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 249 S-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 249 ~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
. ..+.. ....+++|++|+++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC
Confidence 6 22222 224679999999986555433233357889999999998887642 22345678999999999863
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.74 E-value=2.2e-08 Score=84.65 Aligned_cols=135 Identities=16% Similarity=0.015 Sum_probs=88.8
Q ss_pred ccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---c
Q 019031 159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---C 233 (347)
Q Consensus 159 ~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~ 233 (347)
..+|..+ .++|++|+|+++.+.... ....+++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+ .
T Consensus 32 ~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQL-TVLPSAV 107 (229)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcC-CccChhH
Confidence 3444433 278899999998866542 4567889999999988873111 12356788999999988753 322 2
Q ss_pred cccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 234 VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 234 ~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
+..+++|+.|+++++. ..+......+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 3457889999988875 222222246788888888755443322234567788888888777665
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=1.4e-07 Score=85.18 Aligned_cols=204 Identities=16% Similarity=0.100 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHhhhccCcccceEEEEEecCCCC-CC-hhHHHHHHHHHH-HcCceEEEeeeecCCcc--------ccccc
Q 019031 94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GS-APIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLP 162 (347)
Q Consensus 94 ~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~i~~~~-~~~l~~L~~~l~~~~~~--------~~~l~ 162 (347)
.+.+.+.+++. ......++.+.+..-. +. .. ...++.++..+. .++++.|. +...... ...+.
T Consensus 92 ~~~~~~~~fl~--~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~ 165 (362)
T 2ra8_A 92 EGVNLMDKILK--DKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLS 165 (362)
T ss_dssp TTCCHHHHHHH--CTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCH
T ss_pred cHHHHHHHHhc--CCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHH
Confidence 34455555552 1223456777666332 22 11 123444443332 37999998 5321111 11233
Q ss_pred ccccccccccEEEEeeee-ccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHh-cCCCccEEEeeccCC-------CCc--
Q 019031 163 QAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG-------LKH-- 231 (347)
Q Consensus 163 ~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~cp~Le~L~l~~c~~-------~~~-- 231 (347)
..+..+++|+.|.|+++. +... ....++|++|.|..+.++...+..+.. .+|+|+.|.|..+.. +..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~--~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIG--KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCC--SCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceec--cccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 444557999999999874 2222 134899999999998888888888764 699999999863211 111
Q ss_pred --cccccCCCceEEEcccccc---chhhhh--hcCCCccEEEeeeeCCCCC----ceeeccCCCCCcEEEeeccccCchH
Q 019031 232 --LCVSKASKLKIMEIRSFSE---EIEIVE--ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNE 300 (347)
Q Consensus 232 --~~~~~~~~L~~L~l~~~~~---~~~~~~--~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~ 300 (347)
+....+|+|+.|.+.+|.- ....+. ..+|+|++|+++.+...+. ....+..+++|+.|+++.+.+++..
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 1112367777777776650 011111 1345566666653222211 0001133456666666555555544
Q ss_pred HHHHH
Q 019031 301 FNHLI 305 (347)
Q Consensus 301 ~~~~~ 305 (347)
...+.
T Consensus 324 ~~~l~ 328 (362)
T 2ra8_A 324 KKELQ 328 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=3.3e-09 Score=96.52 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=64.8
Q ss_pred ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHH----hcCCCccEEEeeccCCCCc-----c--cc
Q 019031 169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLA----SECPLLEDLCFSNCWGLKH-----L--CV 234 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~----~~cp~Le~L~l~~c~~~~~-----~--~~ 234 (347)
++|++|+|++|.+.... ....+++|++|+|+++.+++.+...+. ..++.|+.|++.+|.. +. + .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHH
Confidence 56777777766654322 223445667777777766555544433 2356667777666642 11 1 01
Q ss_pred ccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCCCCce----eeccCCCCCcEEEeeccccCchHHHH
Q 019031 235 SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADNEFNH 303 (347)
Q Consensus 235 ~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~ 303 (347)
...++|+.|++++|. .+...+ ....++|++|+++++....... ..+...++|+.|+|+++.+++.....
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 234566666666664 111111 1233455555555433322110 11223455555555555555544443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=85.65 Aligned_cols=128 Identities=14% Similarity=0.044 Sum_probs=79.3
Q ss_pred ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEE
Q 019031 169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIM 243 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L 243 (347)
+.++.|+++++.+.... ....+++|++|+|+++.++.-. ...+.++++|+.|++.++..... -.+..+++|+.|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 45678888887755331 2467888888888888763211 12256678888888887754221 224557788888
Q ss_pred Eccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 244 EIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 244 ~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
+++++. ..+ ......+++|+.|+++.+.........+..+++|+.|++.++.+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888775 111 112235677888887754443332334566777888888766654
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.67 E-value=3.6e-08 Score=82.87 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=83.0
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM 243 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L 243 (347)
++|+.|+++++.+.... ....+++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+ .+.++++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence 57888998888765332 4567888999999888773221 12256788888888888753 222 23457888888
Q ss_pred Eccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 244 EIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 244 ~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
+++++. ..+ ......+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888875 111 112235678888888755443333334566788888888777654
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.64 E-value=2.3e-07 Score=86.72 Aligned_cols=156 Identities=17% Similarity=0.038 Sum_probs=70.9
Q ss_pred ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031 169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 248 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~ 248 (347)
++|++|++++|.+........+++|++|+++++.+.. +. ...++|+.|++.+|....--.+..+++|+.|+++++
T Consensus 173 ~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 3666666666665443334556666666666665521 00 112455566555553211111233455555555554
Q ss_pred c-c-----------------chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccC-C
Q 019031 249 S-E-----------------EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF-P 309 (347)
Q Consensus 249 ~-~-----------------~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~ 309 (347)
. . .+..+....++|+.|+++++.... + ....++|+.|+++++.++. +..+ +
T Consensus 248 ~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~---l-~~~~~~L~~L~l~~N~l~~------i~~~~~ 317 (454)
T 1jl5_A 248 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG---L-SELPPNLYYLNASSNEIRS------LCDLPP 317 (454)
T ss_dssp CCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE---E-SCCCTTCCEEECCSSCCSE------ECCCCT
T ss_pred cCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc---c-cCcCCcCCEEECcCCcCCc------ccCCcC
Confidence 3 0 111122223444444444222111 0 0112455566665555443 1123 3
Q ss_pred CCCEEeecCcCCchhhhccCcccceEecccc
Q 019031 310 SLEDLFVTRCCLPGKIKISSNQLKNLLFRSC 340 (347)
Q Consensus 310 ~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c 340 (347)
+|+.|+++++... .+....++|+.|+++++
T Consensus 318 ~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 318 SLEELNVSNNKLI-ELPALPPRLERLIASFN 347 (454)
T ss_dssp TCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred cCCEEECCCCccc-cccccCCcCCEEECCCC
Confidence 6677777665322 23333456666666655
No 116
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.59 E-value=6.5e-08 Score=77.51 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=36.6
Q ss_pred CceEEEccccc---cchhhhhhcCCCccEEEeeeeCC-CCCceeeccC----CCCCcEEEeecc-ccCchHHHHHHccCC
Q 019031 239 KLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVAR----SPHLKKLDLVSV-YFADNEFNHLISKFP 309 (347)
Q Consensus 239 ~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~----~~~L~~L~L~~~-~~~~~~~~~~~~~~~ 309 (347)
+|++|++++|. .++..+ ..+++|++|.+++|.. ++.....+.. +++|++|+|+++ .+++.++..+ ..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 45666666554 222222 2455555555554432 1111111222 234555555443 3555555443 2355
Q ss_pred CCCEEeecCcCCc
Q 019031 310 SLEDLFVTRCCLP 322 (347)
Q Consensus 310 ~L~~L~l~~c~~~ 322 (347)
+|++|++.+|+.+
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 5555555555433
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.58 E-value=5.4e-08 Score=81.76 Aligned_cols=145 Identities=14% Similarity=0.014 Sum_probs=100.3
Q ss_pred cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc
Q 019031 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS 249 (347)
Q Consensus 172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~ 249 (347)
+.++++++.+...+ ..-.++|+.|+|+++.+..-. ...+.++++|+.|++.++.... .-.+.++++|+.|+++++.
T Consensus 14 ~~v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCC-SSCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCC-CccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666665554332 122368999999999874221 1235678999999999886422 1245568999999999986
Q ss_pred -cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
..+.. +...+++|+.|+++++.........+..+++|+.|+|+++.++... ...+..+++|+.|+++++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence 22222 2236799999999966554433445678899999999988876532 234567899999999875
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.58 E-value=6.1e-08 Score=94.04 Aligned_cols=154 Identities=14% Similarity=0.016 Sum_probs=86.7
Q ss_pred cCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc--c-chhhhhhcCCC
Q 019031 187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS--E-EIEIVEISVPS 261 (347)
Q Consensus 187 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~--~-~~~~~~~~~p~ 261 (347)
...+++|+.+.+..+......-...+..+++++.+++..+.... ......+++|+.|.++++. . ........+++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 34566666666665544111111224456666666666553211 1123345788888888764 1 11222335678
Q ss_pred ccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh---hccC-cccceEec
Q 019031 262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISS-NQLKNLLF 337 (347)
Q Consensus 262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~-~~L~~L~l 337 (347)
|+.|+++++......+..++++++|+.|+|+++.++.-. ...+..+++|+.|+++++...... .... ++|+.|+|
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 888888755443333334567788888888877765421 233566788888888876432221 1222 57888888
Q ss_pred cccc
Q 019031 338 RSCK 341 (347)
Q Consensus 338 ~~c~ 341 (347)
++.+
T Consensus 575 ~~Np 578 (635)
T 4g8a_A 575 TQND 578 (635)
T ss_dssp TTCC
T ss_pred eCCC
Confidence 7544
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.58 E-value=7.3e-08 Score=87.30 Aligned_cols=148 Identities=20% Similarity=0.132 Sum_probs=94.3
Q ss_pred ccccEEEEeeeeccCCC--CcC-CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI 242 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~-~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~ 242 (347)
+.++.|+|+++.+.... ... .+++|++|+|+++.+..-.- ..+.++++|+.|+|.++.. ..+ .+.++++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence 45888888888765432 233 78889999998887732211 1256788899999988753 322 2456788999
Q ss_pred EEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeec---cCCCCCcEEEeeccccCchHHHHHHccCCC--CCEEe
Q 019031 243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEV---ARSPHLKKLDLVSVYFADNEFNHLISKFPS--LEDLF 315 (347)
Q Consensus 243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~--L~~L~ 315 (347)
|+++++. ..+ ......+++|+.|+++.+.........+ ..+++|+.|+|+++.++.-.. ..+..+++ ++.|+
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLY 195 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEE
Confidence 9998876 222 1223367889999888554433211122 468899999998888775322 33445665 47788
Q ss_pred ecCc
Q 019031 316 VTRC 319 (347)
Q Consensus 316 l~~c 319 (347)
++++
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 8764
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.57 E-value=7.6e-08 Score=80.83 Aligned_cols=145 Identities=15% Similarity=0.054 Sum_probs=99.4
Q ss_pred cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEcccc
Q 019031 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF 248 (347)
Q Consensus 172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~ 248 (347)
+.++++++.+...+ ..-.+.+++|+|+++.+..-.....+..+++|+.|++.++.. ..+ .+.++++|+.|+++++
T Consensus 14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCC
Confidence 57777777665432 223457889999998874332223357789999999988753 322 3556789999999988
Q ss_pred c-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 249 S-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 249 ~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
. ..+. .....+++|++|.++++.........+..+++|+.|+++++.++... ...+..+++|+.|+++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence 6 2222 22346789999999865554433445678899999999888876531 244567899999999875
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.56 E-value=6.1e-08 Score=78.34 Aligned_cols=133 Identities=15% Similarity=0.017 Sum_probs=68.3
Q ss_pred cccccccEEEEeeeeccCCCCcCC-CCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031 166 FSANSVTNLRLVWCRLEQPFDSIM-LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244 (347)
Q Consensus 166 ~~~~~L~~L~L~~~~l~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~ 244 (347)
..+.+|++|++++|.+........ +++|+.|+++++.++.- ..+..+++|+.|++.+|.. ..+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~----------- 80 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIG----------- 80 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEEC-----------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccC-----------
Confidence 345667777777766553222222 23666666666655321 1233444455555544421 1111
Q ss_pred ccccccchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccCch--HHHHHHccCCCCCEEeecCcCC
Q 019031 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRCCL 321 (347)
Q Consensus 245 l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~ 321 (347)
..+...+|+|+.|+++.+....... ..+..+++|+.|+++++.+... ....++..+|+|+.|+++.+..
T Consensus 81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 0111245555555555333322111 1346678888888877766531 1123466788888888887643
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=1e-08 Score=84.70 Aligned_cols=131 Identities=16% Similarity=0.121 Sum_probs=68.3
Q ss_pred ccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCc
Q 019031 161 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL 240 (347)
Q Consensus 161 l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L 240 (347)
++..+..+++|++|++++|.+........+++|++|+++++.+. .+...+..+|+|+.|++.+|....--.+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~----- 112 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIE----- 112 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHH-----
T ss_pred hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccc-----
Confidence 33344556677777777776554333445667777777776663 12233344566666666655321101111
Q ss_pred eEEEccccccchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccCch---------HHHHHHccCCC
Q 019031 241 KIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADN---------EFNHLISKFPS 310 (347)
Q Consensus 241 ~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~---------~~~~~~~~~~~ 310 (347)
.+++|+.|+++++....... ..+..+++|+.|++.++.+.+. ....++..+|+
T Consensus 113 -----------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 175 (198)
T 1ds9_A 113 -----------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175 (198)
T ss_dssp -----------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred -----------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence 23444444444333221111 1345677777777776655332 12334567788
Q ss_pred CCEEe
Q 019031 311 LEDLF 315 (347)
Q Consensus 311 L~~L~ 315 (347)
|+.|+
T Consensus 176 L~~Ld 180 (198)
T 1ds9_A 176 LKKLD 180 (198)
T ss_dssp CSEEC
T ss_pred cEEEC
Confidence 88776
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.53 E-value=1.7e-08 Score=83.31 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031 237 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF 315 (347)
Q Consensus 237 ~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~ 315 (347)
+++|+.|++++|. ..+......+|+|+.|+++++..... . .+..+++|+.|+++++.+++......+..+++|+.|+
T Consensus 69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 3445555554443 11222223457888888886555432 2 4567899999999999988744435677899999999
Q ss_pred ecCcCCchh-------------hhccCcccceEec
Q 019031 316 VTRCCLPGK-------------IKISSNQLKNLLF 337 (347)
Q Consensus 316 l~~c~~~~~-------------~~~~~~~L~~L~l 337 (347)
+++++.... +...+++|+.|+-
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 999843222 2346788998873
No 124
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=6.8e-08 Score=87.80 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=112.4
Q ss_pred cccccEEEEeeeeccCCC-------CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--ccc----
Q 019031 168 ANSVTNLRLVWCRLEQPF-------DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV---- 234 (347)
Q Consensus 168 ~~~L~~L~L~~~~l~~~~-------~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~---- 234 (347)
.++|++|+|++|.+.... .....++|++|+|+++.+++..+..+...+++|+.|++.+|..-.. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 367999999999865432 1124579999999999999888988888889999999999854211 111
Q ss_pred -ccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCCCCc----eeeccCCCCCcEEEeeccccCchHHHH
Q 019031 235 -SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEFNH 303 (347)
Q Consensus 235 -~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~ 303 (347)
...++|+.|++++|. .+...+ ....++|++|+++++...+.. ...+...++|+.|+|+++.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235789999999997 122222 236789999999965543211 123456789999999999998865444
Q ss_pred H---HccCCCCCEEeecCcCCc
Q 019031 304 L---ISKFPSLEDLFVTRCCLP 322 (347)
Q Consensus 304 ~---~~~~~~L~~L~l~~c~~~ 322 (347)
+ +...++|++|++++|...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4 456799999999998543
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=1.5e-07 Score=76.00 Aligned_cols=84 Identities=18% Similarity=0.089 Sum_probs=56.6
Q ss_pred cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--h----hhccCcc
Q 019031 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K----IKISSNQ 331 (347)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~----~~~~~~~ 331 (347)
.+++|+.|+++++.........+..+++|+.|+++++.+..-.....+..+++|+.|++++++... . +...+++
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 141 (176)
T ss_dssp CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence 456667777664433221111236789999999999988653222256789999999999985322 2 3457789
Q ss_pred cceEeccccc
Q 019031 332 LKNLLFRSCK 341 (347)
Q Consensus 332 L~~L~l~~c~ 341 (347)
|+.|++.++.
T Consensus 142 L~~Ld~~~n~ 151 (176)
T 1a9n_A 142 VRVLDFQKVK 151 (176)
T ss_dssp CSEETTEECC
T ss_pred cceeCCCcCC
Confidence 9999987764
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.50 E-value=8.8e-08 Score=86.75 Aligned_cols=166 Identities=15% Similarity=0.072 Sum_probs=109.1
Q ss_pred cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHh-cCCCccEEEeeccCCCCcc---ccccCCCceEEEccc
Q 019031 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS 247 (347)
Q Consensus 172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~ 247 (347)
+.++++++.+...+ ..-.+.++.|+|+++.++.-... .+. ++++|+.|++.++.. ..+ .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence 57777777665432 22345799999999988432222 233 799999999998853 332 355689999999999
Q ss_pred cc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHH---ccCCCCCEEeecCcCCc
Q 019031 248 FS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCCLP 322 (347)
Q Consensus 248 ~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~~ 322 (347)
+. ..+. .....+++|+.|+++++.........+..+++|+.|+|+++.++.-.. ..+ ..+++|+.|+++++...
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCC
Confidence 86 2222 223467999999999655533323356789999999999888765211 122 56899999999987432
Q ss_pred h---hhhccCcc--cceEeccccc
Q 019031 323 G---KIKISSNQ--LKNLLFRSCK 341 (347)
Q Consensus 323 ~---~~~~~~~~--L~~L~l~~c~ 341 (347)
. ......+. |+.|++.+.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ccCHHHhhhccHhhcceEEecCCC
Confidence 2 11223343 4778877644
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.50 E-value=4.7e-08 Score=94.89 Aligned_cols=149 Identities=17% Similarity=0.073 Sum_probs=100.5
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM 243 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L 243 (347)
+++++|+|+++.+.... ...++++|++|+|+++.+..-. ...+.++++|+.|+|.+|. +..+ .+.++++|+.|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 47999999998865332 4678999999999999773211 1236779999999999985 4433 34578999999
Q ss_pred Eccccc-cchhhh-hhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEEeeccccCc---hHHHHHHccCCCCCEEeec
Q 019031 244 EIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 244 ~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~~L~~L~l~ 317 (347)
++.++. ..+... ...+++|++|+++++.... .....++.+++|+.|+++++.++. ..+..+...-.....+++.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999986 222222 2367899999998554432 223445778999999998887654 2333332222334456666
Q ss_pred Cc
Q 019031 318 RC 319 (347)
Q Consensus 318 ~c 319 (347)
..
T Consensus 210 ~n 211 (635)
T 4g8a_A 210 LN 211 (635)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=3.8e-07 Score=76.98 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=101.1
Q ss_pred ccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEEEccc
Q 019031 171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS 247 (347)
Q Consensus 171 L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L~l~~ 247 (347)
-+.++.++..+...+ ..-.++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+. +..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 455666666554332 233489999999999884321 13367799999999999864 3332 35679999999999
Q ss_pred cc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 248 FS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 248 ~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+. ..+.. ....+++|+.|.++.+... ..+..+..+++|+.|+++++.++... ...+..+++|+.|++.+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCC
Confidence 86 22222 2236899999999865543 33344578899999999988877421 2456778999999998753
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.48 E-value=2.2e-07 Score=89.01 Aligned_cols=157 Identities=16% Similarity=0.072 Sum_probs=107.0
Q ss_pred cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031 142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL 221 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L 221 (347)
.+++.|+ +..+.-. .+| ..+++|++|++++|.+...+. -..+|++|+|+++.++. +.. .+++|+.|
T Consensus 80 ~~L~~L~--Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLE--ITQNALI--SLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI 145 (571)
T ss_dssp TTCSEEE--CCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred CCCCEEE--CcCCCCc--ccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence 5788888 6443222 444 236899999999998765322 22399999999998843 222 68999999
Q ss_pred EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCC-------cEEEeec
Q 019031 222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS 293 (347)
Q Consensus 222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~L~~ 293 (347)
++.+|.. ..+.. .+++|+.|++++|. ..+.. +. ++|+.|+++++.... .+. +.. +| +.|++++
T Consensus 146 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 146 NADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp ECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCS
T ss_pred eCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCC
Confidence 9998863 33333 46899999999986 22333 22 899999999655542 222 222 66 9999999
Q ss_pred cccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031 294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG 323 (347)
Q Consensus 294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 323 (347)
+.++. +...+..+++|+.|++++++...
T Consensus 217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 217 NRITH--IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence 88874 34434459999999999986544
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.44 E-value=3.5e-07 Score=82.36 Aligned_cols=54 Identities=11% Similarity=0.009 Sum_probs=26.7
Q ss_pred ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhh--ccCcccceEec
Q 019031 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLF 337 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l 337 (347)
+..+++|+.|+++++.++. +.. ..+.+|+.|.+..+..+..+. ..+++|+.+++
T Consensus 198 f~~l~~L~~LdLs~N~l~~--lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHS--LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTTEECCSEEECTTSCCCC--CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred hccCcccchhhcCCCCcCc--cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 3455666666666655543 111 234556666655554443332 23445555555
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.37 E-value=2.7e-07 Score=83.14 Aligned_cols=195 Identities=15% Similarity=0.044 Sum_probs=112.5
Q ss_pred cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccC---CCCcCCCCCcCEEE-eeeeeeChHHHHHHHhcCC
Q 019031 142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLT-LERVCLDEQMVQKLASECP 216 (347)
Q Consensus 142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~---~~~~~~~~~L~~L~-L~~~~~~~~~l~~i~~~cp 216 (347)
.++++|+ +.... -..++... ..+++|++|+|++|.+.. .....++++|+++. +..+.+..- ....+.+++
T Consensus 30 ~~l~~L~--Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELR--FVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLP 104 (350)
T ss_dssp TTCSEEE--EESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCT
T ss_pred CCCCEEE--ccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcc
Confidence 4788888 54332 23455443 457889999998887432 12345677766544 344433211 012356788
Q ss_pred CccEEEeeccCCCC--ccccccCCCceEEEccccccchhhhh----h-cCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031 217 LLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE----I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (347)
Q Consensus 217 ~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (347)
+|+.|++.++.... .....+..++..|.+.++. .+..+. . ....++.|.++.+.... .........+|+.|
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDEL 182 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEE
T ss_pred ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHH
Confidence 89999998875322 1222233577778777654 333222 1 23467888887544421 11112234678888
Q ss_pred Eeec-cccCchHHHHHHccCCCCCEEeecCcCCchhhh-ccCcccceEecccccCccc
Q 019031 290 DLVS-VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKL 345 (347)
Q Consensus 290 ~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~l~~ 345 (347)
++.+ +.++. .-...+..+++|+.|+++++. +..+. ..+.+|++|.+.++.++++
T Consensus 183 ~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 183 NLSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp ECTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred hhccCCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCc
Confidence 8854 33332 122456778999999999874 33332 3466888888888877764
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.25 E-value=7.4e-07 Score=73.01 Aligned_cols=107 Identities=18% Similarity=0.077 Sum_probs=51.9
Q ss_pred CcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEe
Q 019031 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL 267 (347)
Q Consensus 192 ~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l 267 (347)
+|++|+++++.++.-.....+..+++|+.|++.++..... -.+.++++|+.|+++++. ..+.. ....+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 4555555555442111111234455555555555432111 123344566666666554 11111 1124566666666
Q ss_pred eeeCCCCCceeeccCCCCCcEEEeeccccCc
Q 019031 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 298 (347)
+++.........+..+++|+.|++.++.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6443332222345677888888888777663
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.20 E-value=1.1e-06 Score=84.41 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=69.6
Q ss_pred CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCccEEEe
Q 019031 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL 267 (347)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l 267 (347)
..|+.|+|+++.++. +.. +..+++|+.|++++|.. ..+ .+..+++|+.|+++++. ..+. ....+++|+.|++
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 358899999888743 233 67889999999988753 232 34567788888888775 2222 1224566666666
Q ss_pred eeeCCCCCc-eeeccCCCCCcEEEeeccccCch--HHHHHHccCCCCCEEe
Q 019031 268 LFYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLF 315 (347)
Q Consensus 268 ~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~ 315 (347)
+.+...... +..++.+++|+.|+++++.++.. ....+...+|+|+.|+
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 543332221 33445566666666665554431 1223344456666554
No 134
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.20 E-value=7.2e-07 Score=77.24 Aligned_cols=38 Identities=21% Similarity=0.527 Sum_probs=34.9
Q ss_pred cccccCCchHHHHHHhcCCChhhhh-hhcccchhhHhhh
Q 019031 17 MDRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQLY 54 (347)
Q Consensus 17 ~d~is~LPddiL~~Ils~L~~~~~~-~~s~vskrW~~l~ 54 (347)
...+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999 9999999999763
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.18 E-value=2.8e-06 Score=68.47 Aligned_cols=106 Identities=20% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cchhh-hhhcCCCccEE
Q 019031 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQL 265 (347)
Q Consensus 191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L 265 (347)
++|++|+++++.+..- ....+..+++|+.|++.++.. ..+ .+..+++|+.|+++++. ..+.. ....+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 4555565555554211 111234456666666655532 211 12345666666666654 11111 11245667777
Q ss_pred EeeeeCCCCCceeeccCCCCCcEEEeeccccCc
Q 019031 266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD 298 (347)
Q Consensus 266 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 298 (347)
+++.+.........+..+++|+.|++.++.+..
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 766443332222224567888888888777654
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.16 E-value=4.2e-07 Score=77.85 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=32.2
Q ss_pred cccCCchHHHHHHhcCCChhhhhhhcccchhhHh
Q 019031 19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ 52 (347)
Q Consensus 19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~ 52 (347)
-|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999995
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.14 E-value=3.2e-06 Score=69.28 Aligned_cols=123 Identities=16% Similarity=-0.032 Sum_probs=70.2
Q ss_pred cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc
Q 019031 172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS 249 (347)
Q Consensus 172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~ 249 (347)
+.++++++.+...+ ..-.++|++|+|+++.++. +...+.++++|+.|++.++.... .-.+.++++|+.|+++++.
T Consensus 13 ~~l~~~~~~l~~ip-~~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCC-SCCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCC-CCCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 44555555444322 1223567777777776631 11235667777777777764321 1224456778888887765
Q ss_pred -cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031 250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA 297 (347)
Q Consensus 250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 297 (347)
..+.. ....+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 12211 1235677888888754443222223567888999999777654
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=6.6e-06 Score=78.88 Aligned_cols=118 Identities=12% Similarity=0.025 Sum_probs=72.6
Q ss_pred CccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc
Q 019031 217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (347)
Q Consensus 217 ~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 295 (347)
.|+.|+++++....--.+..+++|+.|+++++. ..+......+++|+.|+++.+.... .+ .++.+++|+.|+++++.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC
Confidence 577777777643221125556788888888775 2222223467788888887554433 22 56778888888887777
Q ss_pred cCchHHHHHHccCCCCCEEeecCcCCch------hhhccCcccceEe
Q 019031 296 FADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLL 336 (347)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~ 336 (347)
+++...+..+..+++|+.|++++++... .+...+|+|+.|+
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 7653213445678888888888763221 2233467777765
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.03 E-value=1.3e-05 Score=64.43 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=78.1
Q ss_pred cCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cchhh-hhhcCCCccEEEe
Q 019031 193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL 267 (347)
Q Consensus 193 L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l 267 (347)
.+.++++++.+..-. ....++|+.|++.++.. ..+ .+..+++|+.|+++++. ..+.. ....+++|+.|++
T Consensus 9 ~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP----TGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCSSCC----TTCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCccCC----CCCCCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 456666666552111 12347899999988753 222 23557899999999875 22221 1236788999999
Q ss_pred eeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031 268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+++.........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 86555433333356788999999988877642 22345668899999998764
No 140
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.98 E-value=2.1e-06 Score=79.85 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.8
Q ss_pred cccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhcc
Q 019031 15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS 56 (347)
Q Consensus 15 ~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~ 56 (347)
-..|.|+.||+|++.+||+||+.++++++++|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 356999999999999999999999999999999999975443
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.97 E-value=3.6e-06 Score=83.21 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=71.9
Q ss_pred CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCc
Q 019031 186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSL 262 (347)
Q Consensus 186 ~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L 262 (347)
....+++|+.|+|+++.+.. +..-+..+++|+.|+|.+|... .+ .+..+++|+.|+++++. ..+......+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 45677889999998887731 1111346888999998887532 32 24567888899888886 2222222467888
Q ss_pred cEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCch
Q 019031 263 QQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN 299 (347)
Q Consensus 263 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 299 (347)
++|.++.+... ..+..++.+++|+.|+|+++.++..
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence 88888855443 3333467888888888888887753
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=9.8e-06 Score=72.17 Aligned_cols=97 Identities=11% Similarity=-0.022 Sum_probs=58.2
Q ss_pred CCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCc-EEEeeccccCchHHHHHHccCCCCCE
Q 019031 237 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLED 313 (347)
Q Consensus 237 ~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~ 313 (347)
+++|+.|++.++. ..+.. ....+++|+++.+.. +...-..-.+.+|++|+ .+.+.. .++.- -...+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-NLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-ccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCE
Confidence 6889999998763 22322 223678899998873 22111222467788898 999865 33221 1245677899999
Q ss_pred EeecCcC--Cc-hhhhccCcccceEe
Q 019031 314 LFVTRCC--LP-GKIKISSNQLKNLL 336 (347)
Q Consensus 314 L~l~~c~--~~-~~~~~~~~~L~~L~ 336 (347)
+++.... .+ ......+++|+.+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 9986531 11 22344566777664
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.95 E-value=2.5e-05 Score=63.83 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=75.7
Q ss_pred CEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeee
Q 019031 194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLF 269 (347)
Q Consensus 194 ~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~ 269 (347)
+.++++++.+.. +.. .-.+.|+.|++.++.. ..+ .+.++++|+.|+++++. ..+. .....+++|++|++++
T Consensus 13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSS--CCS--CCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCc--CCC--CCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 456666655421 000 1236789999987753 222 34567889999998875 2222 1223678889998885
Q ss_pred eCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+.........+..+++|+.|+|.++.++.- ....+..+++|+.|+++++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence 554433333467788899999988877642 1234566888899988874
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=1.3e-05 Score=71.40 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=51.4
Q ss_pred cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCC-EEeecCcCCch----hhhccCccc
Q 019031 258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE-DLFVTRCCLPG----KIKISSNQL 332 (347)
Q Consensus 258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~~~----~~~~~~~~L 332 (347)
.+++|+++++..+....-....+.+|++|+.+++..+ +.. .-...+.+|++|+ .+.+.. .+. .....|++|
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 4889999999844343323334678999999999665 332 1124567899999 999976 333 234467788
Q ss_pred ceEec
Q 019031 333 KNLLF 337 (347)
Q Consensus 333 ~~L~l 337 (347)
+.+++
T Consensus 300 ~~l~l 304 (329)
T 3sb4_A 300 RYVLA 304 (329)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 88877
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=2.7e-05 Score=63.20 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=37.6
Q ss_pred CCCccEEEeeeeCCCCC----ceeeccCCCCCcEEEe--eccccCchHH---HHHHccCCCCCEEeecCcC
Q 019031 259 VPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDL--VSVYFADNEF---NHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 259 ~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L--~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~ 320 (347)
.++|++|+++++..... ....+...+.|++|+| .++.+.+... ...+...++|+.|++++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 34555555553333221 1112355677888888 7788887653 3445566889999988874
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=1.8e-05 Score=64.65 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=74.5
Q ss_pred CCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEE
Q 019031 216 PLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLD 290 (347)
Q Consensus 216 p~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 290 (347)
+.|+.|++.++...... .+..+++|+.|+++++. ..+ ......+++|+.|+++++.........+..+++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 48999999988542211 25568999999999986 222 22234679999999996555433333467889999999
Q ss_pred eeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 291 LVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 291 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++++.++.. ....+..+++|+.|+++++
T Consensus 109 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 109 LYDNQISCV-MPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred CCCCcCCee-CHHHhhcCCCCCEEEeCCC
Confidence 999988753 2334567899999999876
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.88 E-value=8e-06 Score=80.71 Aligned_cols=108 Identities=14% Similarity=-0.037 Sum_probs=67.7
Q ss_pred cccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCC
Q 019031 162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKAS 238 (347)
Q Consensus 162 ~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~ 238 (347)
+..+..+++|+.|+|+++.+.... ....+++|++|+|+++.++ .+..-+.++++|+.|+|++|.. ..+ .+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCC
Confidence 334455678888888887765332 3457788888888888774 2223356788888888887753 232 244567
Q ss_pred CceEEEccccc-cchhhhhhcCCCccEEEeeeeCC
Q 019031 239 KLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGA 272 (347)
Q Consensus 239 ~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~ 272 (347)
+|+.|+++++. ..+......+++|+.|+++++..
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 88888888775 22222223667888888875444
No 148
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.82 E-value=1e-05 Score=74.79 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=37.4
Q ss_pred cccccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031 13 TVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53 (347)
Q Consensus 13 ~~~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l 53 (347)
+....|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 34467999999999999999999999999999999999863
No 149
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.74 E-value=7.5e-06 Score=75.62 Aligned_cols=38 Identities=32% Similarity=0.628 Sum_probs=35.6
Q ss_pred cccccccCCchH----HHHHHhcCCChhhhhhhcccchhhHh
Q 019031 15 VAMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ 52 (347)
Q Consensus 15 ~~~d~is~LPdd----iL~~Ils~L~~~~~~~~s~vskrW~~ 52 (347)
-..|.|+.||+| |+.+||+||+.++++++++|||+|++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 356999999999 99999999999999999999999984
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.58 E-value=6.2e-05 Score=61.05 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=17.9
Q ss_pred CCCcCEEEeeeeeeChHHHHHH---HhcCCCccEEEeecc
Q 019031 190 LCSLKKLTLERVCLDEQMVQKL---ASECPLLEDLCFSNC 226 (347)
Q Consensus 190 ~~~L~~L~L~~~~~~~~~l~~i---~~~cp~Le~L~l~~c 226 (347)
.++|++|+|+++.+++.+...+ +..++.|++|+|.+|
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4455555555555544433322 233455555555554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.51 E-value=0.00028 Score=64.50 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=26.4
Q ss_pred ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcccceEeccc
Q 019031 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRS 339 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~ 339 (347)
+.+|++|+.+.+... +..- -...+.+|++|+.+.+.. .+.. ....+ +|+.+.+.+
T Consensus 296 F~~c~~L~~l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 296 LEGCPKLARFEIPES-IRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTCTTCCEECCCTT-CCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred hhCCccCCeEEeCCc-eEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence 455666666666421 2110 012345566666666644 2222 22344 677766654
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.45 E-value=0.00015 Score=57.91 Aligned_cols=80 Identities=13% Similarity=-0.007 Sum_probs=44.5
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~ 244 (347)
++|+.|+|+++.+.... ...++++|++|+|+++.+..- ....+.++++|+.|++.++.... .-.+..+++|+.|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 56777777777655432 345667777777777766311 11224556677777776664211 11233456666666
Q ss_pred ccccc
Q 019031 245 IRSFS 249 (347)
Q Consensus 245 l~~~~ 249 (347)
+.++.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 66553
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.41 E-value=0.00018 Score=57.60 Aligned_cols=80 Identities=11% Similarity=-0.014 Sum_probs=39.5
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME 244 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~ 244 (347)
++|+.|+|+++.+.... ....+++|++|+|+++.+..- ...++.++++|+.|++.++.... .-.+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 56666666666654332 344566666666666655211 01123455666666665553211 11123345555555
Q ss_pred ccccc
Q 019031 245 IRSFS 249 (347)
Q Consensus 245 l~~~~ 249 (347)
+.++.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55543
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.38 E-value=0.0002 Score=57.08 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=66.1
Q ss_pred ccEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc
Q 019031 218 LEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY 295 (347)
Q Consensus 218 Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 295 (347)
.+.+++.++. +..+...-.++|+.|+++++. ..+ ......+++|+.|+++.+.........+..+++|+.|+|+++.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4667766553 333332223789999999886 222 2223467899999998655543333335778999999998888
Q ss_pred cCchHHHHHHccCCCCCEEeecCc
Q 019031 296 FADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
++.- ....+..+++|+.|+++++
T Consensus 90 l~~~-~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSI-PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCC-CTTTTTTCTTCCEEECCSS
T ss_pred cCEe-CHHHhcCCCCCCEEEeCCC
Confidence 7642 1234667899999999875
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.27 E-value=0.00038 Score=55.69 Aligned_cols=100 Identities=13% Similarity=0.023 Sum_probs=64.8
Q ss_pred cEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031 219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF 296 (347)
Q Consensus 219 e~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 296 (347)
..+++.++. +..+...-.++|+.|+++++. ..+ ......+++|+.|+++.+.........+..+++|+.|+|+++.+
T Consensus 15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 455555543 333322223789999999886 222 22234678999999986555432222357789999999988887
Q ss_pred CchHHHHHHccCCCCCEEeecCcC
Q 019031 297 ADNEFNHLISKFPSLEDLFVTRCC 320 (347)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~c~ 320 (347)
+.- ....+..+++|+.|++++++
T Consensus 94 ~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 KSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCC-CTTTTTTCTTCSEEECCSSC
T ss_pred cee-CHHHhccccCCCEEEeCCCC
Confidence 642 12346678999999998763
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.26 E-value=0.00031 Score=64.21 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=16.6
Q ss_pred ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c 319 (347)
+.+|++|+.+.|..+ ++.- -...+.++ +|+.+.+...
T Consensus 319 F~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEECCS
T ss_pred hcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEcCC
Confidence 345566666666322 1110 01223445 5666666553
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.47 E-value=0.0025 Score=56.75 Aligned_cols=88 Identities=20% Similarity=0.110 Sum_probs=59.7
Q ss_pred cccccccccccccccEEEEee-eeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc-
Q 019031 158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC- 233 (347)
Q Consensus 158 ~~~l~~~~~~~~~L~~L~L~~-~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~- 233 (347)
...+|. +...++|+.|+|++ +.+.... ...++++|+.|+|+++.+..-. ...+.++++|+.|+|.++.. ..+.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL-ESLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence 345666 66778899999986 7655332 3567899999999998873221 22357789999999988753 3222
Q ss_pred --cccCCCceEEEccccc
Q 019031 234 --VSKASKLKIMEIRSFS 249 (347)
Q Consensus 234 --~~~~~~L~~L~l~~~~ 249 (347)
+..+ +|+.|.+.++.
T Consensus 98 ~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp TTTCSC-CCCEEECCSSC
T ss_pred HHcccC-CceEEEeeCCC
Confidence 2222 48889888764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.38 E-value=0.0019 Score=55.30 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=14.6
Q ss_pred CCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeecc
Q 019031 190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC 226 (347)
Q Consensus 190 ~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c 226 (347)
+|+|++|+|+++.+ +-..+...+..+|+|+.|+|+++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 34444444444444 21222223334444444444433
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.22 E-value=0.0058 Score=52.26 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=17.7
Q ss_pred CCcEEEeeccccCc------hHHHHHHccCCCCCEEee
Q 019031 285 HLKKLDLVSVYFAD------NEFNHLISKFPSLEDLFV 316 (347)
Q Consensus 285 ~L~~L~L~~~~~~~------~~~~~~~~~~~~L~~L~l 316 (347)
+|+.|+|.++.+.. .-...++..+|+|+.|+=
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 56666666555542 122345566677766653
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.19 E-value=0.0085 Score=53.23 Aligned_cols=73 Identities=15% Similarity=0.073 Sum_probs=35.3
Q ss_pred EEEeee-eccCCCCcCCCCCcCEEEeee-eeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEcccc
Q 019031 174 LRLVWC-RLEQPFDSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF 248 (347)
Q Consensus 174 L~L~~~-~l~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~ 248 (347)
+++++. .+...+....+++|++|+|++ +.+..-. ...+.++++|+.|+|.++. +..+ .+.++++|+.|+++++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence 455544 333221244556677777764 5542111 1124456666666666653 2221 2234555666655554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.45 E-value=0.027 Score=51.04 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=30.7
Q ss_pred ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh----hccCcccceEec
Q 019031 280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLF 337 (347)
Q Consensus 280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L~l 337 (347)
+..+.+|+.+.+... +..- -...+.+|.+|+.+.+.. .+..+ ...|.+|+.+.+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred ccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence 356778888887432 2110 012356788888888854 23222 335567777765
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.84 E-value=0.052 Score=49.11 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=80.3
Q ss_pred ccccccccEEEEeeeec-cCCCCcCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCce
Q 019031 165 IFSANSVTNLRLVWCRL-EQPFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLK 241 (347)
Q Consensus 165 ~~~~~~L~~L~L~~~~l-~~~~~~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~ 241 (347)
.+.+.+|+.+.+..... .......++.+|+.+.+..... ... .+..|+.++.+...... +.......+.+|+
T Consensus 226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLT 300 (394)
T ss_dssp TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCC
T ss_pred hcccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-ecccccccccccc
Confidence 34567788887765321 1112456778888887754422 222 24567777777664332 2223344567777
Q ss_pred EEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031 242 IMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 242 ~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
.+.+......+..-. ..+.+|+++.+.. ....-..-.+.+|.+|+.+.+..+ ++.- -...+.+|++|+.+.+..
T Consensus 301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 301 EVKLLDSVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPK 375 (394)
T ss_dssp EEEECTTCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEG
T ss_pred ccccccccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECC
Confidence 777764332222222 3567788877751 111111123567888888888533 2210 113456788888888865
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.57 E-value=0.065 Score=48.45 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=59.0
Q ss_pred HhcCCCccEEEeeccC-CCCccccccCCCceEEEccccccchhhh-hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031 212 ASECPLLEDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (347)
+.+|..|+.+.+.... .+..-...++++|+.+.+......+..- -..|++|+++.+.. +...-..-.+.+|.+|+.+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEE
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEE
Confidence 4567777777664321 1222333456777777775432122222 23567777777751 1111111235667788888
Q ss_pred Eeecc--ccCchHHHHHHccCCCCCEEeecCcCCchhhhccCcccceEec
Q 019031 290 DLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLF 337 (347)
Q Consensus 290 ~L~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l 337 (347)
.|..+ .+.. ..+.+|++|+.+++.+..........+.+|+.+.+
T Consensus 340 ~ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 340 AIPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp EECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred EECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 87422 1222 34567788888887763211112234456666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.24 E-value=0.1 Score=42.22 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCccEEEeeccCCCCcc-------ccccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCC
Q 019031 206 QMVQKLASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGA 272 (347)
Q Consensus 206 ~~l~~i~~~cp~Le~L~l~~c~~~~~~-------~~~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~ 272 (347)
+.+..++.+-+.|++|+|.++..+... .+..-.+|+.|.+++|. .+...+ ...-..|++|+++.+..
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 456666666677777777654222210 01112577888887775 111111 12234567777764333
Q ss_pred CCCcee----eccCCCCCcEEEeecc---ccCchH---HHHHHccCCCCCEEeecCc
Q 019031 273 RRPRVV----EVARSPHLKKLDLVSV---YFADNE---FNHLISKFPSLEDLFVTRC 319 (347)
Q Consensus 273 ~~~~~~----~~~~~~~L~~L~L~~~---~~~~~~---~~~~~~~~~~L~~L~l~~c 319 (347)
...... .+..-+.|+.|+|+++ .+.+.. +.+.+..-+.|+.|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 221111 1233455777777532 334322 3334444566666666653
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.91 E-value=0.16 Score=45.75 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=73.8
Q ss_pred cCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeecc-CCCCccccccCCCceEEEccccccchhhhh-hcCCCc
Q 019031 187 SIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSL 262 (347)
Q Consensus 187 ~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L 262 (347)
..+|.+|+++.+..... +... +.+|+.|+.+.+... ..+..-.+.+|.+|+.+.+......+..-. ..|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccceecCcc----cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 45678899998854322 3332 567999999998542 123334556788999999975432332222 378999
Q ss_pred cEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031 263 QQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR 318 (347)
Q Consensus 263 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 318 (347)
+++.+.. ....-..-.+.+|++|+.+++.++... ...+..+.+|+.+.+..
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence 9999962 222222335788999999999764321 23345678888887753
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.69 E-value=0.78 Score=36.99 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=11.6
Q ss_pred cCCCCCcEEEeecccc
Q 019031 281 ARSPHLKKLDLVSVYF 296 (347)
Q Consensus 281 ~~~~~L~~L~L~~~~~ 296 (347)
..-+.|+.|+++.+.+
T Consensus 154 ~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 154 EENESLLRVGISFASM 169 (197)
T ss_dssp HHCSSCCEEECCCCCH
T ss_pred HhCCCcCeEeccCCCc
Confidence 4457899999975543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.43 E-value=1.1 Score=40.00 Aligned_cols=102 Identities=7% Similarity=0.052 Sum_probs=50.6
Q ss_pred HhcCCCccEEEeecc-CCCCccccccCCCceEEEccccccchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031 212 ASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL 289 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 289 (347)
+.+|..|+.+.+... ..+......++.+|+.+.+......+.. ....+++|+++.+.......-..-.+.+|.+|+.+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 345677777766432 1122223344566777766543212211 22356777777775222211111234567777777
Q ss_pred Eeecc--ccCchHHHHHHccCCCCCEEeec
Q 019031 290 DLVSV--YFADNEFNHLISKFPSLEDLFVT 317 (347)
Q Consensus 290 ~L~~~--~~~~~~~~~~~~~~~~L~~L~l~ 317 (347)
.|... .+.. ..+.+|.+|+.+.+.
T Consensus 316 ~lp~~l~~I~~----~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTALKTIQV----YAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTTCCEECT----TTTTTCTTCCCCCCC
T ss_pred EcCccccEEHH----HHhhCCCCCCEEEEC
Confidence 77322 1222 234567777777664
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.12 E-value=0.85 Score=40.64 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=56.0
Q ss_pred ccCCCceEEEccccccchhhh-hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCE
Q 019031 235 SKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED 313 (347)
Q Consensus 235 ~~~~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 313 (347)
.++.+|+.+.+-.....+... ...+.+|+.+.+.. .........+..|++|+.+.+..+.++.- -...+.+|.+|+.
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCCccEeCccccceeehhccccccc-cceecccccccccccccccccccccccee-hhhhhcCCCCCCE
Confidence 345677777775432122222 23567788887751 11111112357789999999966544321 1134567899999
Q ss_pred EeecC-cCCc-hhhhccCcccceEec
Q 019031 314 LFVTR-CCLP-GKIKISSNQLKNLLF 337 (347)
Q Consensus 314 L~l~~-c~~~-~~~~~~~~~L~~L~l 337 (347)
+.+.. ...+ ......|.+|+.+.+
T Consensus 315 i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 315 VTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred EEcCccccEEHHHHhhCCCCCCEEEE
Confidence 99854 2211 122335566776665
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=64.86 E-value=2.9 Score=31.01 Aligned_cols=35 Identities=20% Similarity=-0.063 Sum_probs=23.6
Q ss_pred ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee
Q 019031 169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL 203 (347)
Q Consensus 169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~ 203 (347)
++|+.|+|+++.+.... ....+++|++|.|.++.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 35778888877765432 345677777777777766
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=45.40 E-value=10 Score=27.91 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=25.5
Q ss_pred CccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC----chHHHHHHccC
Q 019031 261 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA----DNEFNHLISKF 308 (347)
Q Consensus 261 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~ 308 (347)
+|+.|+++++.......-.+..+++|+.|+|.++.+. ..++..++...
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 4566666533332222223456777888888776553 24455555433
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.45 E-value=23 Score=24.62 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=15.9
Q ss_pred HhcCCCccEEEeecc-CCCCccccccCCCceEEEccc
Q 019031 212 ASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRS 247 (347)
Q Consensus 212 ~~~cp~Le~L~l~~c-~~~~~~~~~~~~~L~~L~l~~ 247 (347)
+.+|..|+++.|-.. ..+..-.+.+|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 344555555555321 222333344445555555544
No 172
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=28.18 E-value=36 Score=19.83 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=12.9
Q ss_pred ccccccCCchHHHHHHhcC
Q 019031 16 AMDRISELPTFIIHHLMSY 34 (347)
Q Consensus 16 ~~d~is~LPddiL~~Ils~ 34 (347)
|.+-|+.||.||=.+|++-
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 4566677777777777664
Done!