BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019032
(347 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis
thaliana GN=At4g40080 PE=2 SV=2
Length = 365
Score = 244 bits (624), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 207/361 (57%), Gaps = 18/361 (4%)
Query: 1 MGRLKQLRIFNGVLKDKASLIKTTL---STKRQTSFIRRAILRATTHGSSSPPSINRIDA 57
MGR+ G +KDKAS K L +TK +T ++LRATTH S+PP +
Sbjct: 1 MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60
Query: 58 VISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTL 117
++S+G GSR A + ++++M+RLH T D VALK L IH+I+ FIL+DQLS+FP
Sbjct: 61 ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120
Query: 118 GGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKE 177
GGRN+L LS F D+ P WELS+W+RWYA LE L+ SR++G+ +SS+ S + ++ E
Sbjct: 121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180
Query: 178 EKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISL 237
E + +L +SDLL EIDALVG ++E +P+ +L +I +LV EDY E+
Sbjct: 181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240
Query: 238 RVVELDERMTSLSVDQLTLFMSALKKFEDCKERLS-LLFVNRKKN--DGLWHLIGETKMK 294
R E ER +LS + ALK+ E CKERLS + N K+ DG W L+ E K
Sbjct: 241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300
Query: 295 IETMMNKKAE-EMALVRIMKRDETREWSR----------QPFRFTSDGSWLGLDRVSLTV 343
I + + + E ++V KRD+ E +R P RF+S G + +DR + V
Sbjct: 301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSS-GRFSNVDRFNFPV 359
Query: 344 S 344
S
Sbjct: 360 S 360
>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410 OS=Arabidopsis
thaliana GN=At5g10410 PE=2 SV=2
Length = 338
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 158/316 (50%), Gaps = 20/316 (6%)
Query: 12 GVLKDKASLIKTTLSTKRQTS---FIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPR 68
G KDKAS+ K L ++ +I A+L++TT + PP+ + + AVIS N
Sbjct: 10 GKFKDKASIGKARLVHSFGSTAVKYIHLALLKSTTRTPNKPPNSDYVSAVISYSNSRY-- 67
Query: 69 ACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLG-GRNFLNLSE 127
A A A + RL T++ VA K L IH +I K F LG GRN L L+E
Sbjct: 68 APAAFSAALWRLRVTKNAIVATKSLIVIHKLI-------KSSRDKFEGLGHGRNNLKLNE 120
Query: 128 FHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIFALLSSD 187
F D S + ELS WIRWY L++ V +VLG + + K+ ++++++ + +
Sbjct: 121 FSDKSSNLTLELSQWIRWYGQYLDRLSWVPKVLGSFPNLLVNPKDKVEEKDRVSSYQTGY 180
Query: 188 LLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMT 247
++ + D+LV F + I P + +N +V EI LV EDY I R + +R+ L ER+
Sbjct: 181 IIRQTDSLVSFFEHICTRPEIPPMFQNKIVDEIRELVIEDYFKIVRLVMVRLQVLFERLI 240
Query: 248 SLSVDQ-----LTLFMSALKKFEDCKERLSLLFVN-RKKNDGLWHLIGETKMKIETMMNK 301
V L F L + +CKE LS LF R+ D W L+ K + E NK
Sbjct: 241 KPGVKPIGDLGLNDFSLLLVRLVECKESLSGLFWRCRRLADDFWCLVEMLKAETEKKNNK 300
Query: 302 KAEEMA-LVRIMKRDE 316
+ E+A LV+ +D+
Sbjct: 301 QMIELAGLVQTTVKDD 316
>sp|Q9FKQ2|CAP18_ARATH Putative clathrin assembly protein At5g65370 OS=Arabidopsis
thaliana GN=At5g65370 PE=3 SV=1
Length = 295
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 157/308 (50%), Gaps = 31/308 (10%)
Query: 1 MGRLKQLRIFNGVLKDKASLIKTT---LSTKRQTSFIRRAILRATTHGSSSPPS---INR 54
MG+L L NG+LKD+AS +K L + I A+L+AT+H S++PPS +
Sbjct: 1 MGKLATL---NGILKDEASQMKLNVVHLCSSVNAKTIDLALLKATSHTSNNPPSDKYVTF 57
Query: 55 IDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDS-FILKDQL-- 111
+ + I + G + A++ RL T D VA KCL +H ++ +S + +D L
Sbjct: 58 LQSTIDTCYGPDT-----VDAILHRLRVTTDVCVAAKCLILLHKMVKSESGYNGEDSLRN 112
Query: 112 -----SIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSS 166
++ T GG N L L++ + +S + EL+ W++WY L+ L+++ VLG +
Sbjct: 113 NINHRTLIYTQGGSN-LKLNDLNVNSSRFTRELTPWVQWYKQYLDCYLSIAEVLGITPNI 171
Query: 167 SDSKKNHKDKEEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSE 226
+ ++ + + +++ + +L +ID LV + IS+ P + + N +V E+ L+ +
Sbjct: 172 KEKNEDKRLETQRVSSYPMDCILKQIDFLVELFEHISDRPKAPQSKLNKIVIEMTELMVQ 231
Query: 227 DYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKN--DGL 284
DY R + +R EL+ R V + + L+K E+CKE LS F R K
Sbjct: 232 DYFSAIRLMRIRFEELNVR-----VAKPNELVPVLEKLENCKEGLS-EFSWRSKYLIADF 285
Query: 285 WHLIGETK 292
W+L+ + K
Sbjct: 286 WYLVSKLK 293
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis
thaliana GN=At2g01600 PE=2 SV=2
Length = 571
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 1 MGRLKQLRIFNGVLKD--KASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAV 58
MG L+ R G LKD K L++ + + + AI++AT H PP + +
Sbjct: 1 MGTLQSWRKAYGALKDSTKVGLVRV----NSEYADLDVAIVKATNH-VECPPKDRHLRKI 55
Query: 59 ISSGNGSRPRA--CACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPT 116
++ + +R RA CI AL RLH TR+ VALK L IH ++ + +++L F
Sbjct: 56 FAATSVTRARADVAYCIHALSRRLHKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQ 115
Query: 117 LGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGY 162
G L LS F DDS P +W+ SAW+R YA LE+ L RVL Y
Sbjct: 116 RG--RILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKY 159
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis
thaliana GN=At5g57200 PE=3 SV=1
Length = 591
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 25/207 (12%)
Query: 1 MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRR---AILRATTHGSSSPPSINRIDA 57
MG R G LKD TT+ + S + AI++AT H SPP +
Sbjct: 1 MGTFTSFRKAYGALKDT-----TTVGLAKVNSEFKDLDIAIVKATNH-VESPPKERHVRK 54
Query: 58 VISSGNGSRPRA--CACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFP 115
+ S+ + +PRA CI AL RL TR+ VA+K L IH + + +++L +
Sbjct: 55 IFSATSVIQPRADVAYCIHALSKRLSKTRNWVVAMKVLIVIHRTLREGDPTFREELLNYS 114
Query: 116 TLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHL-------SSSD 168
R+ L +S F DD+ P +W+ SAW+R YA LE+ L RVL Y + +S
Sbjct: 115 HR--RHILRISNFKDDTSPLAWDCSAWVRTYALFLEERLECYRVLKYDIEAERLPKASGA 172
Query: 169 SKKNHKDKEEKIFALLSSDLLIEIDAL 195
+ K H+ + L DLL ++ AL
Sbjct: 173 ASKTHRTR-----MLSGEDLLEQLPAL 194
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis
thaliana GN=At1g14910 PE=2 SV=2
Length = 692
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 89/182 (48%), Gaps = 11/182 (6%)
Query: 1 MGRLKQLRIFNGVLKD--KASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAV 58
MG L+ R G LKD K L++ + AI++AT H PP + +
Sbjct: 1 MGTLQSWRRAYGALKDTTKVGLVRVNSDYAE----LDVAIVKATNH-VECPPKDRHLRKI 55
Query: 59 ISSGNGSRPRA--CACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPT 116
+ + RPRA CI AL RLH TR+ VALK L IH ++ +++L F +
Sbjct: 56 FLATSAIRPRADVAYCIHALSRRLHKTRNWTVALKALLVIHRLLRDGDPTFREELLNF-S 114
Query: 117 LGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDK 176
GR + +S F DDS P +W+ S W+R YA LE+ L RVL Y + + K +
Sbjct: 115 QKGR-IMQISNFKDDSSPVAWDCSGWVRTYALFLEERLECFRVLKYDIEAERLPKVSPGQ 173
Query: 177 EE 178
E+
Sbjct: 174 EK 175
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis
thaliana GN=At5g35200 PE=1 SV=1
Length = 544
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 7 LRIFNGVLKDKASLIKTTLSTKRQTSFIRR---AILRATTHGSSSPPSINR-IDAVISSG 62
LR + G +KD TT+S + S + AI++AT H PS R I A+ +
Sbjct: 11 LRRYLGAIKDT-----TTVSLAKVNSDYKELDIAIVKATNHVER--PSKERYIRAIFMAI 63
Query: 63 NGSRPRA--CACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGR 120
+ +RPRA CI AL RL T + VALK L IH + + +++ + +
Sbjct: 64 SATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRALREVDQTFHEEVINY-SRSRS 122
Query: 121 NFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKI 180
+ LN+S F DDS P +W SAW+R+YA LE+ L RVL Y + + D
Sbjct: 123 HMLNMSHFKDDSGPNAWAYSAWVRFYALFLEERLECFRVLKYDVEVDPPRTKDLD----- 177
Query: 181 FALLSSDLLIEIDAL 195
+ DLL ++ AL
Sbjct: 178 ----TPDLLEQLPAL 188
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis
thaliana GN=At4g25940 PE=2 SV=1
Length = 601
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 1 MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRR---AILRATTHGSSSPPSINRIDA 57
M R G +KD TT+S + S + AI++AT H S+P I
Sbjct: 1 MATFNSFRKAVGAIKDS-----TTVSIAKVNSEFKDLDVAIVKATNHVESAPKE-RHIRR 54
Query: 58 VISSGNGSRPRA--CACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFP 115
+ S+ + +PRA CI AL RL TR+ VA+K L IH + + +++L +
Sbjct: 55 IFSATSVVQPRADVAYCIHALAKRLSKTRNWVVAIKVLIVIHRTLREGDPTFREELLNYS 114
Query: 116 TLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSS 166
G + L +S F DD+ P +W+ SAWIR YA LE+ L RVL Y + +
Sbjct: 115 HRG--HILRISNFKDDTSPLAWDCSAWIRTYALFLEERLECYRVLKYDIEA 163
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis
thaliana GN=At2g25430 PE=1 SV=2
Length = 653
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 12 GVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACA 71
G +KD+ S+ +++ + AI++AT+H P S I +++ + SR A
Sbjct: 10 GAVKDQTSIGIAKVASNMAPD-LEVAIVKATSH-DDDPASEKYIREILNLTSLSRGYILA 67
Query: 72 CIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDD 131
C+ ++ RL TRD VALK L +H ++ + I ++++ ++ T G LN+S+F D+
Sbjct: 68 CVTSVSRRLSKTRDWVVALKALMLVHRLLNEGDPIFQEEI-LYSTRRGTRMLNMSDFRDE 126
Query: 132 SDPESWELSAWIRWYATVLEQNLTVS---RVLGYHLSSSDSKKNHKDKEEK 179
+ SW+ SA++R YA L+Q L ++ R G ++S + +H + +++
Sbjct: 127 AHSSSWDHSAFVRTYAGYLDQRLELALFERKSGVSVNSGGNSSHHSNNDDR 177
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis
thaliana GN=At4g32285 PE=1 SV=2
Length = 635
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 12 GVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACA 71
GV+KD+ S+ +++ + AI++AT+H S I ++S + SR A
Sbjct: 10 GVVKDQTSIGIAKVASNMAPD-LEVAIVKATSHDDDQS-SDKYIREILSLTSLSRGYVHA 67
Query: 72 CIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDD 131
C+ ++ RL TRD VALK L +H ++ + + ++++ ++ T G LN+S+F D+
Sbjct: 68 CVTSVSRRLKKTRDWIVALKALMLVHRLLNEGDPLFQEEI-LYATRRGTRILNMSDFRDE 126
Query: 132 SDPESWELSAWIRWYATVLEQNLTVS 157
+ SW+ SA++R YA+ L+Q L ++
Sbjct: 127 AHSSSWDHSAFVRTYASYLDQRLELA 152
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis
thaliana GN=At4g02650 PE=2 SV=2
Length = 611
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 1 MGRLKQLRIFNGVLKDKASLIKTTLSTKRQT-SFIRRAILRATTHGSSSPPSINRIDAVI 59
MG K R G +KD+ S+ + + + + + A+++AT H P I ++
Sbjct: 1 MGSSKLKRAI-GAVKDQTSVGLAKVGGRSSSLTELEIAVVKATRH-DDYPAEDKYIREIL 58
Query: 60 SSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGG 119
+ SR AC+ L RL+ T++ VALK L I ++T D +Q F T G
Sbjct: 59 CLTSYSRNYVSACVATLSRRLNKTKNWSVALKTLILIQRLLT-DGDRAYEQEIFFATRRG 117
Query: 120 RNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNL 154
LN+S+F D S +SW+ SA++R YA L++ L
Sbjct: 118 TRLLNMSDFRDASQSDSWDYSAFVRTYALYLDERL 152
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis
thaliana GN=At1g03050 PE=2 SV=1
Length = 599
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 12 GVLKDKASLIKTTLSTKRQT-SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRAC 70
G +KD+ S+ ++ + + S + AI++AT H P I ++S + SR
Sbjct: 11 GAVKDQTSVGLAKVNGRSASLSELDVAIVKATRH-EEFPAEEKYIREILSLTSYSRSYIN 69
Query: 71 ACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHD 130
AC+ L RL+ T+ VALK L I ++ + + ++ F T G LN+S+F D
Sbjct: 70 ACVSTLSRRLNKTKCWTVALKTLILIQRLLGEGDQAYEQEI-FFATRRGTRLLNMSDFRD 128
Query: 131 DSDPESWELSAWIRWYATVLEQNL 154
S SW+ SA++R YA L++ L
Sbjct: 129 VSRSNSWDYSAFVRTYALYLDERL 152
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana
GN=AP180 PE=1 SV=1
Length = 653
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 12 GVLKDKASL----IKTTLSTKRQTSFIRRAILRATTHGSSSPPS---INRIDAVISSGNG 64
G +KD+ S+ + + + + AIL+AT+H P + I +ISS
Sbjct: 10 GAVKDQTSISLAKVANGATGGGDLTTLEVAILKATSHDEEVPIDDRLVTEILGIISS--- 66
Query: 65 SRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITK-DSFILKDQLSIFPTLGGRNFL 123
+ A +C A+ R+ TR+ VALK L + I D + ++ L G L
Sbjct: 67 KKSHAASCAAAIGRRIGRTRNWIVALKSLVLVLRIFQDGDPYFPREVLHAMKR--GAKIL 124
Query: 124 NLSEFHDDSDPESWELSAWIRWYATVLEQNL 154
NLS F DDS+ W+ +A++R +A L++ L
Sbjct: 125 NLSSFRDDSNSCPWDFTAFVRTFALYLDERL 155
>sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240 OS=Arabidopsis
thaliana GN=At1g25240 PE=3 SV=1
Length = 376
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 23/151 (15%)
Query: 11 NGVLKDKASLIKTTLSTKRQTSF----IRRAILRATTHGSSSPPSIN--RIDAVISSGNG 64
+G LKD+ +L T+ R+TSF + AI+ AT+H SS N R+ I S
Sbjct: 8 SGALKDRKTLF--TIGFSRKTSFRNPDLDSAIIHATSHDDSSVDYHNAHRVYKWIRSSPA 65
Query: 65 S-RPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFL 123
+ +P + AL R++ TR VALK L +H ++ L+ ++ P
Sbjct: 66 NLKP----LVHALSSRVNRTRSWIVALKALMLVHGVLCCKVTSLQ-EIRRLP-------F 113
Query: 124 NLSEFHD-DSDP-ESWELSAWIRWYATVLEQ 152
+LS+F D S P ++W +A+IR Y + L+Q
Sbjct: 114 DLSDFSDGHSRPSKTWGFNAFIRAYFSFLDQ 144
>sp|Q9SHV5|CAP14_ARATH Putative clathrin assembly protein At2g01920 OS=Arabidopsis
thaliana GN=At2g01920 PE=2 SV=3
Length = 312
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 3 RLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSP--PSINRIDAVIS 60
++K R +G +KDK SLI T + ++ T+ A+++AT+H S ++ I I
Sbjct: 4 KMKLWRRVSGAIKDKLSLI--TATDEKFTA----AVIKATSHNDVSMDIENVQFIYRYIQ 57
Query: 61 SGNGS-RPRACACIQALMDRLHGTRDTFVALKCLYTIH-----NIITKDS 104
S S +P I+A+ R+ TR+ VALKCL +H I+T DS
Sbjct: 58 SNPSSFKP----IIRAVSLRVEHTRNWTVALKCLMLLHGLFFSGIMTVDS 103
>sp|Q9C9X5|CAP12_ARATH Putative clathrin assembly protein At1g68110 OS=Arabidopsis
thaliana GN=At1g68110 PE=2 SV=1
Length = 379
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 12 GVLKDKASLIKTTLSTKRQTSF----IRRAILRATTHGSSSPPSIN--RIDAVISSGNGS 65
+KD+ SL+ S +R +S+ + AI++AT+H SS N R+ I S S
Sbjct: 9 AAIKDRKSLLAVGFS-RRNSSYRNADLEAAIIKATSHDDSSVDYSNAHRVYKWIRS---S 64
Query: 66 RPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGG---RNF 122
+ A+ R++ TR VALK L +H ++ P++ G R
Sbjct: 65 PLNLKTLVYAISSRVNHTRSWIVALKSLMLLHGVLC----------CKVPSVVGEFRRLP 114
Query: 123 LNLSEFHDDSD--PESWELSAWIRWYATVLEQ 152
+LS+F D ++W + ++R Y L
Sbjct: 115 FDLSDFSDGHSCLSKTWGFNVFVRTYFAFLHH 146
>sp|Q6AV21|Y3982_ORYSJ B3 domain-containing protein Os03g0619800 OS=Oryza sativa subsp.
japonica GN=Os03g0619800 PE=2 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 59 ISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFI 106
++ GN R ++CAC + ++ L G F+ ++H++I D F+
Sbjct: 1 MAGGNTHRKKSCACCKEYLEHLGGKMRCFLRRMAADSMHSMIMPDRFV 48
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 OS=Homo sapiens GN=SNAP91 PE=1
SV=2
Length = 907
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVAL- 90
S + RA+ +ATTH P +D +I + N + L +R T ++V +
Sbjct: 20 SAVARAVCKATTHEVMG-PKKKHLDYLIQATNETNVNIPQMADTLFER--ATNSSWVVVF 76
Query: 91 KCLYTIHNIIT--KDSFILKDQLSIFPTLGGRNFL-NLSEFHDDSDPESWELSAWIRWYA 147
K L T H+++ + FI L RN L NLS F D S +++S +IR Y+
Sbjct: 77 KALVTTHHLMVHGNERFIQY--------LASRNTLFNLSNFLDKSGSHGYDMSTFIRRYS 128
Query: 148 TVLEQNLTVSRVLGYHLS 165
L + R + + +
Sbjct: 129 RYLNEKAFSYRQMAFDFA 146
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 OS=Rattus norvegicus GN=Snap91
PE=1 SV=1
Length = 915
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVAL- 90
S + RA+ +ATTH P +D +I + N + L +R T ++V +
Sbjct: 20 SAVARAVCKATTHEVMG-PKKKHLDYLIQATNETNVNIPQMADTLFER--ATNSSWVVVF 76
Query: 91 KCLYTIHNIIT--KDSFILKDQLSIFPTLGGRNFL-NLSEFHDDSDPESWELSAWIRWYA 147
K L T H+++ + FI L RN L NLS F D S +++S +IR Y+
Sbjct: 77 KALVTTHHLMVHGNERFIQY--------LASRNTLFNLSNFLDKSGSHGYDMSTFIRRYS 128
Query: 148 TVLEQNLTVSRVLGYHLS 165
L + R + + +
Sbjct: 129 RYLNEKAFSYRQMAFDFA 146
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 OS=Mus musculus GN=Snap91 PE=1
SV=1
Length = 901
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 15/138 (10%)
Query: 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVAL- 90
S + RA+ +ATTH P +D +I + N + L +R T ++V +
Sbjct: 20 SAVARAVCKATTHEVMG-PKKKHLDYLIQATNETNVNIPQMADTLFER--ATNSSWVVVF 76
Query: 91 KCLYTIHNIIT--KDSFILKDQLSIFPTLGGRNFL-NLSEFHDDSDPESWELSAWIRWYA 147
K L T H+++ + FI L RN L NLS F D S +++S +IR Y+
Sbjct: 77 KALVTTHHLMVHGNERFIQY--------LASRNTLFNLSNFLDKSGSHGYDMSTFIRRYS 128
Query: 148 TVLEQNLTVSRVLGYHLS 165
L + R + + +
Sbjct: 129 RYLNEKAFSYRQMAFDFA 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,861,032
Number of Sequences: 539616
Number of extensions: 4409396
Number of successful extensions: 12617
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12584
Number of HSP's gapped (non-prelim): 36
length of query: 347
length of database: 191,569,459
effective HSP length: 118
effective length of query: 229
effective length of database: 127,894,771
effective search space: 29287902559
effective search space used: 29287902559
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)