Query 019032
Match_columns 347
No_of_seqs 125 out of 372
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 2.4E-59 8.2E-64 450.2 24.7 265 1-294 3-284 (299)
2 3zyl_A Phosphatidylinositol-bi 100.0 3.6E-59 1.2E-63 443.2 23.6 246 14-280 13-263 (271)
3 3zym_A Phosphatidylinositol-bi 100.0 3.6E-58 1.2E-62 443.9 24.7 261 13-294 12-277 (310)
4 1eyh_A Epsin; superhelix of he 99.5 1.5E-13 5.1E-18 118.7 8.7 119 30-155 2-121 (144)
5 1inz_A EPS15-interacting porte 99.4 2.4E-13 8.3E-18 117.9 7.9 117 32-155 22-139 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.1 1.2E-10 4.1E-15 101.1 8.1 118 30-155 8-128 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.1 3.3E-10 1.1E-14 100.7 9.9 117 31-155 32-151 (176)
8 1vdy_A Hypothetical protein (R 98.4 1.5E-06 5.3E-11 74.4 10.0 115 35-155 13-129 (140)
9 1elk_A Target of MYB1; superhe 96.3 0.011 3.8E-07 51.0 7.9 79 32-111 15-93 (157)
10 3ldz_A STAM-1, signal transduc 96.1 0.022 7.6E-07 48.2 8.4 77 33-111 5-81 (140)
11 3g2s_A C-terminal fragment of 95.9 0.028 9.4E-07 48.2 8.5 79 31-111 9-87 (149)
12 3rru_A TOM1L1 protein; structu 95.8 0.023 8E-07 48.9 7.4 79 32-111 15-93 (152)
13 1x5b_A Signal transducing adap 95.7 0.026 9E-07 49.0 7.7 77 33-111 15-91 (163)
14 3zyq_A Hepatocyte growth facto 95.5 0.031 1.1E-06 50.9 7.7 79 31-111 6-84 (226)
15 1juq_A ADP-ribosylation factor 95.2 0.036 1.2E-06 48.5 6.5 78 32-111 12-89 (171)
16 1mhq_A ADP-ribosylation factor 95.1 0.039 1.3E-06 47.2 6.4 76 34-111 2-77 (148)
17 1dvp_A HRS, hepatocyte growth 94.9 0.057 1.9E-06 48.7 7.4 77 33-111 5-81 (220)
18 3bej_E Nuclear receptor coacti 39.8 12 0.00041 22.3 1.3 12 94-105 13-24 (26)
19 3ci9_A Heat shock factor-bindi 23.5 1.8E+02 0.0061 19.9 5.2 28 225-252 19-46 (48)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=2.4e-59 Score=450.19 Aligned_cols=265 Identities=16% Similarity=0.165 Sum_probs=216.2
Q ss_pred CcchhHHHHHHhhhc-cccchhhhcccCCCCchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHh
Q 019032 1 MGRLKQLRIFNGVLK-DKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDR 79 (347)
Q Consensus 1 m~~~~~lr~~~G~lK-D~asi~~A~v~~~~~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~R 79 (347)
|+ +++||+++|++| |+++. ++++||+|||+|++ +|||+|||++||.+|+++++++++++++|.+|
T Consensus 3 ~~-~~~~~~~~~a~k~~~~~~------------~l~kaV~KAT~~~~-~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R 68 (299)
T 1hx8_A 3 MA-GQTINDRLLAARHSLAGQ------------GLAKSVCKATTEEC-IGPKKKHLDYLVHCANEPNVSIPHLANLLIER 68 (299)
T ss_dssp --------------------C------------HHHHHHHHHSCSSS-SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHHhhccchh------------HHHHHHHhccCCCC-CCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 45 578999999999 88872 58889999999996 99999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHhhcCCcchHHHHhhcccCCCCcceecCCCCCCCC-----------CCcchhhHHHHHHHH
Q 019032 80 LHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSD-----------PESWELSAWIRWYAT 148 (347)
Q Consensus 80 L~~T~~w~ValK~LIviH~lireG~~~f~d~l~~y~s~~g~~~L~Ls~F~d~ss-----------~~~~~~s~~VR~Ya~ 148 (347)
. .|+||+|||||||++|+|||+|+|.|.+++. + ++++|+|++|+|.++ +.+|+|++|||+|++
T Consensus 69 ~-~~~~w~va~K~LivlH~llreG~~~~~~~l~---~--~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~ 142 (299)
T 1hx8_A 69 S-QNANWVVVYKSLITTHHLMAYGNERFMQYLA---S--SNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAK 142 (299)
T ss_dssp H-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---H--TTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHH
T ss_pred c-cCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---h--CCcccchhhhhcccccccccccccccccccchhHHHHHHHH
Confidence 6 5789999999999999999999999988884 2 346899999999765 467899999999999
Q ss_pred HHHHHhHhhhhhccccccCCCCCCCchhhhHHhhcChHHHHHHHHHHHHHHHH-hhcCCCcccccccHHHHHHHHHHHHH
Q 019032 149 VLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIFALLSSDLLIEIDALVGFVQE-ISNVPNSLHLQRNNLVYEIVRLVSED 227 (347)
Q Consensus 149 YL~eRl~~~r~l~~d~~~~~s~~~~~~~~~~l~~L~~~~LL~~l~~LQ~li~~-l~~~p~~~~l~~N~li~~a~~Ll~ed 227 (347)
||++|+.+|+.+++|+++.+ .++ .++++++|+.+.||++++.||+||++ ++|.|.+.+ .+|.++++|+.+|+.|
T Consensus 143 yL~~r~~~f~~~~~d~~~~~--~~~--~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~-~~n~~~~~Al~llv~D 217 (299)
T 1hx8_A 143 YLNEKSLSYRAMAFDFCKVK--RGK--EEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSND-LSNGVINMSFMLLFRD 217 (299)
T ss_dssp HHHHHHHHHHHHSSCGGGC---------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGG-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccc--cCc--cccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCccc-ccchHHHHHHHHHHHH
Confidence 99999999999999987542 122 23567889988999999999999995 599998877 4999999999988666
Q ss_pred ----HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcCcccccchhhhhh
Q 019032 228 ----YRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMK 294 (347)
Q Consensus 228 ----Y~~~negIi~lLe~~fEr~~~ms~~da~~aL~iyKrf~~q~E~L~~~f~~r~~~~~~w~~~~~~k~~ 294 (347)
|..+|+||+|+||+||| |++.||.+||+|||||.+|+++|++||.+|+.-.-+=..||+++..
T Consensus 218 s~~lY~~i~~gi~~lLe~~fe----m~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~~~iP~L~~~ 284 (299)
T 1hx8_A 218 LIRLFACYNDGIINLLEKYFD----MNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKA 284 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCCCCC
Confidence 88999999999999995 9999999999999999999999999999977654444668888854
No 2
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=3.6e-59 Score=443.25 Aligned_cols=246 Identities=19% Similarity=0.269 Sum_probs=218.1
Q ss_pred hccccchhhhcccCCCCchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHH
Q 019032 14 LKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCL 93 (347)
Q Consensus 14 lKD~asi~~A~v~~~~~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~L 93 (347)
+.|+-...+-.+.+ +++++||+|||+|++ +|||+|||++||.+|+++++++++++++|.+|++ ++||+||||||
T Consensus 13 ~~~~~~~~~~~~~~----s~l~~aV~KATs~~~-~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~~~w~v~~KaL 86 (271)
T 3zyl_A 13 LTDRITAAQHSVTG----SAVSKTVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSL 86 (271)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHTCSSS-SCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-SSCHHHHHHHH
T ss_pred HHHHHHHHHhcccc----hHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 44544444444533 589999999999997 9999999999999999999999999999999999 79999999999
Q ss_pred HHHHHHhhcCCcchHHHHhhcccCCCCcceecCCCCCCCCCCcchhhHHHHHHHHHHHHHhHhhhhhccccccCCCCCCC
Q 019032 94 YTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNH 173 (347)
Q Consensus 94 IviH~lireG~~~f~d~l~~y~s~~g~~~L~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~~~r~l~~d~~~~~s~~~~ 173 (347)
|++|+|||+|+|.+.+++. +++ ++|+|++|.|.+++.+|++++|||+|++||++|+.+|+.++.|+++.+
T Consensus 87 ivlH~llreG~~~~l~~~~----~~~-~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~k----- 156 (271)
T 3zyl_A 87 ITTHHLMVYGNERFIQYLA----SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVK----- 156 (271)
T ss_dssp HHHHHHHHHSCHHHHHHHH----HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTSC-----
T ss_pred HHHHHHHhcCCHHHHHHHH----hCC-CeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccccC-----
Confidence 9999999999998877663 234 589999999988788899999999999999999999999999987642
Q ss_pred chhhhHHhhcChHHHHHHHHHHHHHHHH-hhcCCCcccccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccC
Q 019032 174 KDKEEKIFALLSSDLLIEIDALVGFVQE-ISNVPNSLHLQRNNLVYEIVRLVSED----YRLIQREISLRVVELDERMTS 248 (347)
Q Consensus 174 ~~~~~~l~~L~~~~LL~~l~~LQ~li~~-l~~~p~~~~l~~N~li~~a~~Ll~ed----Y~~~negIi~lLe~~fEr~~~ 248 (347)
+..+.++++|+.+.||++++.||+||++ ++|+|.+.++ +|+++++||.+|+.| |..+|+||||+||+|||
T Consensus 157 ~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~-~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffe---- 231 (271)
T 3zyl_A 157 RGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNEL-TNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFD---- 231 (271)
T ss_dssp CSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG----
T ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 1124578899988999999999999995 5999999885 999999999988655 99999999999999996
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 019032 249 LSVDQLTLFMSALKKFEDCKERLSLLFVNRKK 280 (347)
Q Consensus 249 ms~~da~~aL~iyKrf~~q~E~L~~~f~~r~~ 280 (347)
|++.||++||+|||||.+|+|+|++||.+||.
T Consensus 232 m~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~ 263 (271)
T 3zyl_A 232 MKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQ 263 (271)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999874
No 3
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-58 Score=443.93 Aligned_cols=261 Identities=18% Similarity=0.228 Sum_probs=220.0
Q ss_pred hhccccchhhhcccCCCCchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHH
Q 019032 13 VLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKC 92 (347)
Q Consensus 13 ~lKD~asi~~A~v~~~~~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~ 92 (347)
.+.|+-...+-.+.+ +++++||+|||+|++ +|||+|||++|+.+|+++++++++++++|.+|++ ++||+|||||
T Consensus 12 ~~~~~~~~~~~~~~~----s~l~~aV~KATs~~~-~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~-~~~w~vv~Ka 85 (310)
T 3zym_A 12 SLTDRITAAQHSVTG----SAVSKTVCKATTHEI-MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKS 85 (310)
T ss_dssp CHHHHHHHHHHCCHH----HHHHHHHHHHTCSSS-SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-SSCHHHHHHH
T ss_pred cHHHHHHHHHhcccc----cHHHHHHHhcCcCCC-CCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-CCchHHHHHH
Confidence 355555544445533 589999999999997 9999999999999999999989999999999999 7999999999
Q ss_pred HHHHHHHhhcCCcchHHHHhhcccCCCCcceecCCCCCCCCCCcchhhHHHHHHHHHHHHHhHhhhhhccccccCCCCCC
Q 019032 93 LYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKN 172 (347)
Q Consensus 93 LIviH~lireG~~~f~d~l~~y~s~~g~~~L~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~~~r~l~~d~~~~~s~~~ 172 (347)
||++|+|||+|+|.|.+.+. +++ ++|+|++|.|.+++.+|+|++|||+|++||++|+.+|+.++.|+++.+.
T Consensus 86 LivlH~llreG~~~~l~~~~----~~~-~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~~~--- 157 (310)
T 3zym_A 86 LITTHHLMVYGNERFIQYLA----SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKR--- 157 (310)
T ss_dssp HHHHHHHHHHSCHHHHHHHH----HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSCC---
T ss_pred HHHHHHHHhcCCHHHHHHHH----hCC-CeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcccccC---
Confidence 99999999999998877663 233 5899999999887788999999999999999999999999999875421
Q ss_pred CchhhhHHhhcChHHHHHHHHHHHHHHHH-hhcCCCcccccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc
Q 019032 173 HKDKEEKIFALLSSDLLIEIDALVGFVQE-ISNVPNSLHLQRNNLVYEIVRLVSED----YRLIQREISLRVVELDERMT 247 (347)
Q Consensus 173 ~~~~~~~l~~L~~~~LL~~l~~LQ~li~~-l~~~p~~~~l~~N~li~~a~~Ll~ed----Y~~~negIi~lLe~~fEr~~ 247 (347)
..++++++|+.+.||++++.||+||++ ++|+|.+.++ +|+++++||.+|+.| |+.+|+||||+||+|||
T Consensus 158 --~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~-~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffe--- 231 (310)
T 3zym_A 158 --GADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNEL-TNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFD--- 231 (310)
T ss_dssp --STTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG---
T ss_pred --CCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 124578899988999999999999995 5999999885 999999999988655 99999999999999996
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcCcccccchhhhhh
Q 019032 248 SLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMK 294 (347)
Q Consensus 248 ~ms~~da~~aL~iyKrf~~q~E~L~~~f~~r~~~~~~w~~~~~~k~~ 294 (347)
|++.||++||+|||||.+|+|+|++||.+|+.-..--.-||+++..
T Consensus 232 -m~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~ 277 (310)
T 3zym_A 232 -MKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSG 277 (310)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcc
Confidence 9999999999999999999999999999977663222258888754
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.45 E-value=1.5e-13 Score=118.72 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=96.6
Q ss_pred CchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHhhcCCcchH
Q 019032 30 QTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGT-RDTFVALKCLYTIHNIITKDSFILK 108 (347)
Q Consensus 30 ~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T-~~w~ValK~LIviH~lireG~~~f~ 108 (347)
|-++.++.|..||+.++ .+|+.+++..|..+|++. ...+.++..|-+||++. ++|.++||||+++|.||++|++.+.
T Consensus 2 ~ys~~E~~VreAT~~d~-wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv 79 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDP-WGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVS 79 (144)
T ss_dssp CCCHHHHHHHHHTCSSS-SCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHH
Confidence 34689999999999996 999999999999999975 55689999999999853 5899999999999999999999776
Q ss_pred HHHhhcccCCCCcceecCCCCCCCCCCcchhhHHHHHHHHHHHHHhH
Q 019032 109 DQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLT 155 (347)
Q Consensus 109 d~l~~y~s~~g~~~L~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~ 155 (347)
+.+... -..+..|..|.-. ++.+.|.+..||.+|.+|-+-|.
T Consensus 80 ~~~~~~----~~~i~~L~~F~y~-d~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 80 QQCKEN----MYAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHT----HHHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHh----hHHHhhhccceee-CCCccchHHHHHHHHHHHHHHHC
Confidence 666321 1124467777421 12456788999999999988877
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.42 E-value=2.4e-13 Score=117.88 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=95.3
Q ss_pred hhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHhhcCCcchHHH
Q 019032 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGT-RDTFVALKCLYTIHNIITKDSFILKDQ 110 (347)
Q Consensus 32 ~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T-~~w~ValK~LIviH~lireG~~~f~d~ 110 (347)
++.++.|..||+.++ .+|+.+++..|..+|++. ...+.++..|-+||++. ++|.++||||+++|.||++|++.+.+.
T Consensus 22 s~~E~~VreAT~~d~-wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~ 99 (148)
T 1inz_A 22 SEAEIKVREATSNDP-WGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQ 99 (148)
T ss_dssp CCHHHHHHHHSCCCS-CCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhCCCC-CCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHH
Confidence 679999999999996 999999999999999985 55689999999999953 589999999999999999999877666
Q ss_pred HhhcccCCCCcceecCCCCCCCCCCcchhhHHHHHHHHHHHHHhH
Q 019032 111 LSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLT 155 (347)
Q Consensus 111 l~~y~s~~g~~~L~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~ 155 (347)
+... -..+..|..|.-. ++.+.|.+..||.+|.+|-+-+.
T Consensus 100 ~r~~----~~~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 100 CKEN----MYAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHT----HHHHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHh----HHHHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 6321 1123457776432 12456788999999999999887
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.12 E-value=1.2e-10 Score=101.08 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=94.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHhhcCCcch
Q 019032 30 QTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGT--RDTFVALKCLYTIHNIITKDSFIL 107 (347)
Q Consensus 30 ~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T--~~w~ValK~LIviH~lireG~~~f 107 (347)
+-++.++.|..||+.|+ .+|..+++..|..+|++. .....++..|-+||.+. ++|.++||||++++.|+++|++.+
T Consensus 8 ~ys~~E~kVreAT~nd~-wGp~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~v 85 (150)
T 3onk_A 8 NYTEMEGKVREATNNEP-WGASSTLMDQISQGTYNF-REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERF 85 (150)
T ss_dssp CCCHHHHHHHHHTSSCS-SCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHH
Confidence 34689999999999886 999999999999999976 44589999999999853 489999999999999999999988
Q ss_pred HHHHhhcccCCCCccee-cCCCCCCCCCCcchhhHHHHHHHHHHHHHhH
Q 019032 108 KDQLSIFPTLGGRNFLN-LSEFHDDSDPESWELSAWIRWYATVLEQNLT 155 (347)
Q Consensus 108 ~d~l~~y~s~~g~~~L~-Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~ 155 (347)
.+.+.. +...+. |..|.-. ++.+-|.+..||..|..|-+-+.
T Consensus 86 v~~~r~-----~~~~i~~L~~F~~~-d~~G~D~G~~VR~kak~l~~LL~ 128 (150)
T 3onk_A 86 IDDTRN-----SINLIRILETFHYI-DSQGRDQGINVRTRVKALIELLS 128 (150)
T ss_dssp HHHHHT-----THHHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-----HHHHHHhhhccccc-CCCCCchHHHHHHHHHHHHHHHc
Confidence 777742 222343 6776432 12345678899999999988776
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.09 E-value=3.3e-10 Score=100.70 Aligned_cols=117 Identities=16% Similarity=0.057 Sum_probs=93.9
Q ss_pred chhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhc-CC-CCChHHHHHHHHHHHHHhhcCCcchH
Q 019032 31 TSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRL-HG-TRDTFVALKCLYTIHNIITKDSFILK 108 (347)
Q Consensus 31 ~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL-~~-T~~w~ValK~LIviH~lireG~~~f~ 108 (347)
-++.++.|..||+.|+ .+|..+++..|..+|++.. ..+.++..|-+|+ ++ .++|.++||||++++.||+.|++.+.
T Consensus 32 ys~~E~kVreATnnd~-wGPs~~~m~eIa~~T~~~~-~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv 109 (176)
T 1xgw_A 32 YSEIESKVREATNDDP-WGPSGQLMGEIAKATFMYE-QFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVV 109 (176)
T ss_dssp CCHHHHHHHHHTCSCS-SCCCHHHHHHHHHHTTCTT-THHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHH
Confidence 3589999999999996 8999999999999999874 4589999999996 53 47999999999999999999998777
Q ss_pred HHHhhcccCCCCcce-ecCCCCCCCCCCcchhhHHHHHHHHHHHHHhH
Q 019032 109 DQLSIFPTLGGRNFL-NLSEFHDDSDPESWELSAWIRWYATVLEQNLT 155 (347)
Q Consensus 109 d~l~~y~s~~g~~~L-~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~ 155 (347)
+.+.. ....+ .|..|.-- ++.+.|.+..||..|..|-+-|.
T Consensus 110 ~~~r~-----~i~~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 110 TSARE-----HIYDLRSLENYHFV-DEHGKDQGINIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHH-----THHHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHH-----hHHHHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHHC
Confidence 76632 11111 26666432 12456788999999999988777
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.39 E-value=1.5e-06 Score=74.36 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=90.8
Q ss_pred HHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCcc-HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHHhh
Q 019032 35 RRAILRATTHGSSSPPSINRIDAVISSGNGSRPR-ACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSI 113 (347)
Q Consensus 35 ~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~-~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l~~ 113 (347)
++.|.+||+-++ .||.--=+++|-..|..++.. +.+++..|.+||++ ++|-|++|||-+|=.|+.+|++.|.+.+..
T Consensus 13 ~~~V~~ATs~d~-~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDED-KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCS-SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 456889999986 656555568899999887544 47999999999997 689999999999999999999999999864
Q ss_pred cccCCCCcceecCCCCCCCCC-CcchhhHHHHHHHHHHHHHhH
Q 019032 114 FPTLGGRNFLNLSEFHDDSDP-ESWELSAWIRWYATVLEQNLT 155 (347)
Q Consensus 114 y~s~~g~~~L~Ls~F~d~ss~-~~~~~s~~VR~Ya~YL~eRl~ 155 (347)
+.. -+-.+.+|+...+| .+.+....||.-|+=|-+-+.
T Consensus 91 ~~~----~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 91 NSV----AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp TTH----HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred hHH----HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 322 12347888776554 567889999999887777665
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=96.30 E-value=0.011 Score=50.96 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=67.7
Q ss_pred hhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 32 ~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
+.++..|.|||+... .-|+--.+-.|....+..+....+++++|.+||+..+|.-|++-||.++--++..+.+.|..++
T Consensus 15 s~~~~~IekATs~~l-~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSL-QSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTC-SSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCC-CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 479999999999885 6788888888777776666667899999999997447899999999999999999988887777
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=96.05 E-value=0.022 Score=48.16 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=68.3
Q ss_pred hHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 33 FIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 33 dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
.++..|.|||+..- ..|+--++-.|--..+..+....+++++|.+||.. +|.-|++-+|.++--++..+.+.|..++
T Consensus 5 p~d~~iekAT~~~l-~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 5 PFDQDVEKATSEMN-TAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp TTHHHHHHHTCTTS-SSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHcCCCC-CCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 58899999999984 77999999888888887777778999999999985 7899999999999999999998888777
No 11
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.94 E-value=0.028 Score=48.24 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=69.7
Q ss_pred chhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHH
Q 019032 31 TSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQ 110 (347)
Q Consensus 31 ~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~ 110 (347)
.+.++..|.|||+..- .-|+--.+-.|--..+..+....+++++|.+||+ .+|.-|++-+|.++.-++..+.+.|..+
T Consensus 9 ~~~~~~~IekATs~~l-~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 9 PETLEARINRATNPLN-KELDWASINGFCEQLNEDFEGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCCHHHHHHHHSCTTC-SSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCcHHHHHHHHcCCCC-CCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3469999999999985 7788888888888887766666899999999998 5899999999999999999999988877
Q ss_pred H
Q 019032 111 L 111 (347)
Q Consensus 111 l 111 (347)
+
T Consensus 87 i 87 (149)
T 3g2s_A 87 V 87 (149)
T ss_dssp H
T ss_pred H
Confidence 7
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.79 E-value=0.023 Score=48.86 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=68.2
Q ss_pred hhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 32 ~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
+.++..|.|||+... ..|+--.+-.|--..+..+....+++++|.+||+..+|..|++-+|.++--++..+...|..++
T Consensus 15 t~~~~~IekATs~~l-~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGV-QTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSC-CSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCC-CCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 479999999999985 7788888887777776666667899999999998546888899999999999999999998888
No 13
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.75 E-value=0.026 Score=48.96 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=66.9
Q ss_pred hHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 33 FIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 33 dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
.++..|.|||+..- .-|+--.+-.|....+..+....+++++|.+||.. +|.-|++-||.++--++..+.+.|..++
T Consensus 15 p~~~~IekATs~~~-~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 15 PFEQDVEKATNEYN-TTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp TTHHHHHHHTCTTC-SSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHcCCCC-CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 58899999999884 77888888888888776666678999999999985 7888999999999999999888887776
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.54 E-value=0.031 Score=50.92 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=68.9
Q ss_pred chhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHH
Q 019032 31 TSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQ 110 (347)
Q Consensus 31 ~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~ 110 (347)
.+.++..|.|||+..- ..|+--.+-.|--..+..+....+++++|.+||+ .+|.-|++-+|.++--++..+.+.|..+
T Consensus 6 ~~~~~~~i~kAT~~~~-~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 6 SGTFERLLDKATSQLL-LETDWESILQICDLIRQGDTQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp -CHHHHHHHHHTCTTC-SSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CchHHHHHHHHcCCCC-CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 3579999999999984 7799888888888877766777899999999999 4899999999999999999998888777
Q ss_pred H
Q 019032 111 L 111 (347)
Q Consensus 111 l 111 (347)
+
T Consensus 84 i 84 (226)
T 3zyq_A 84 V 84 (226)
T ss_dssp H
T ss_pred h
Confidence 7
No 15
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.15 E-value=0.036 Score=48.52 Aligned_cols=78 Identities=10% Similarity=0.113 Sum_probs=67.9
Q ss_pred hhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 32 SFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 32 ~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
+.++..|.|||+... .-|+--.+-.|....+.......+++++|.+||+. +|.-|++-+|.++--++..+.+.|..++
T Consensus 12 s~~~~~IekATs~~l-~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 12 ESLESWLNKATNPSN-RQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS-PQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp CCHHHHHHHHTCTTC-SSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CcHHHHHHHHcCCCC-CCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 369999999999985 77898888888888776666668999999999984 7999999999999999999888887776
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.07 E-value=0.039 Score=47.16 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 34 IRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 34 l~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
++..|.|||+... .-|+--.+-.|.-..+..+....+++++|.+||+ .+|.-|++-||.++--++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l-~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSM-SEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTC-SSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCC-CCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6778999999885 6788888888888777666666799999999998 58999999999999999999888887777
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.91 E-value=0.057 Score=48.75 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=67.8
Q ss_pred hHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHH
Q 019032 33 FIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQL 111 (347)
Q Consensus 33 dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l 111 (347)
.++..|.|||+... ..|+-..+-.|-......+....+++++|.+||+. +|..|++-+|.++--++..+.+.|..++
T Consensus 5 ~~~~~ie~AT~~~~-~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLR-LEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTC-SSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCC-CCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 38899999999985 77898888888888877777778999999999985 7999999999999999999888787666
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=39.80 E-value=12 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHhhcCCc
Q 019032 94 YTIHNIITKDSF 105 (347)
Q Consensus 94 IviH~lireG~~ 105 (347)
-.+|+++++|+|
T Consensus 13 kILHrLLQ~~sP 24 (26)
T 3bej_E 13 KILHRLLQEGSP 24 (26)
T ss_pred HHHHHHHHcCCC
Confidence 367999999976
No 19
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.54 E-value=1.8e+02 Score=19.87 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHH
Q 019032 225 SEDYRLIQREISLRVVELDERMTSLSVD 252 (347)
Q Consensus 225 ~edY~~~negIi~lLe~~fEr~~~ms~~ 252 (347)
.+-|..+.+.|+.+++....|+.+|.+.
T Consensus 19 q~kFq~mS~~I~~riDdM~~RIDdLE~s 46 (48)
T 3ci9_A 19 QDKFQTISDQIIGRIDDMSSRIDDLEKN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 3339999999999999999999888753
Done!