BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019034
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
Oxidase Reveals The Structural Basis Of Hereditary
Coproporphyria
Length = 346
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 164/255 (64%), Gaps = 6/255 (2%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNV 148
++ + E +I + Q VCQA+ + DGG F D W R GGGGIS VLQDG ++EKAGV++
Sbjct: 40 MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSI 99
Query: 149 SVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206
SVV+G + E K G +PF A G+SSV+HPKNP APT+HFNYRYFE +
Sbjct: 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE 159
Query: 207 APKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYF 266
+QWWFGGG DLTP Y+ +ED HFH T K ACD+ P YP+FKKWCDDYF
Sbjct: 160 EADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYF 215
Query: 267 YIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326
+I H FFDDL+ +E + F CA +V+P+YIP+++K D FT Q K
Sbjct: 216 FIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKL 275
Query: 327 WQQLRRGRYVEFNLV 341
WQQLRRGRYVEFNL+
Sbjct: 276 WQQLRRGRYVEFNLL 290
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TKL|B Chain B, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TLB|A Chain A, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|D Chain D, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|Q Chain Q, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|S Chain S, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|U Chain U, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|W Chain W, Yeast Coproporphyrinogen Oxidase
Length = 326
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 159/265 (60%), Gaps = 16/265 (6%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 10 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 68
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 69 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 128
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 129 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 185
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 186 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 245
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLV 341
D P+T + + WQ +RRGRYVEFNL+
Sbjct: 246 DMPYTKEEQQWQAIRRGRYVEFNLI 270
>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase
pdb|1TXN|B Chain B, Crystal Structure Of Coproporphyrinogen Iii Oxidase
Length = 328
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 160/265 (60%), Gaps = 16/265 (6%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 12 IRQQXEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSXVIQDGTTFEKGGVN 70
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 71 VSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVKFFACGLSXVIHPVNPHAPTT 130
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 131 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 187
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 188 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKXVEDCFDAFLPSYLTIVKRRK 247
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLV 341
D P+T + + WQ +RRGRYVEFNL+
Sbjct: 248 DXPYTKEEQQWQAIRRGRYVEFNLI 272
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
Length = 260
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 152/258 (58%), Gaps = 16/258 (6%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 7 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 65
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 66 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 125
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 126 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 182
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 183 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 242
Query: 317 DTPFTDQHKAWQQLRRGR 334
D P+T + + WQ +RRGR
Sbjct: 243 DMPYTKEEQQWQAIRRGR 260
>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
pdb|3EJO|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
Length = 310
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 134/241 (55%), Gaps = 9/241 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG P
Sbjct: 25 QDDICEALEAEDGQATFMEDKWTREGGGGGRTRVMVNGAVIEKGGVNFSHVYGKGLPGSS 84
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 85 TERHPDMTG-----CNFQAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 135
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED ++FH + C F Y RFK WCD+YF+I +
Sbjct: 136 GGGFDLTPYYAVEEDCRYFHQVAQDLCKPFGADVYTRFKVWCDEYFFIPYRNEARGIGGL 195
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F I AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 196 FFDDLNEWPFEKCFEFVQAVGKGYIDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 255
Query: 341 V 341
V
Sbjct: 256 V 256
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 136/244 (55%), Gaps = 15/244 (6%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLP--- 80
Query: 161 XXXXXXXSDEKPGPIP---FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ 217
S E+ I F A G+S V+HPKNP PT H N R F + P
Sbjct: 81 -----MSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----V 131
Query: 218 WWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXX 277
WWFGGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 132 WWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGI 191
Query: 278 XXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVE 337
FFDDLN++ E F + AYIPI+ +RK+TP+T+Q +Q+ RRGRY E
Sbjct: 192 GGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAE 251
Query: 338 FNLV 341
FNLV
Sbjct: 252 FNLV 255
>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
pdb|3E8J|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
Length = 306
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYG 153
++ + QD +C AIE D F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG
Sbjct: 14 KEFLLKLQDDICHAIEAEDEQATFMEDKWTREGGGGGRTRVIANGAVIEKGGVNFSHVYG 73
Query: 154 VMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPG 213
P + + A G+S V+HPKNP PT H N R F + P
Sbjct: 74 KGLPGSSTERHPDMAG-----CNYQAMGVSLVIHPKNPHVPTSHANVRLFVAEKEGKEP- 127
Query: 214 APRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXX 273
WWFGGG DLTP Y EED +FH + C F Y RFK WCD+YF+I H
Sbjct: 128 ---VWWFGGGFDLTPYYAVEEDCYYFHHVAQELCRPFGADVYERFKAWCDEYFFIPHRNE 184
Query: 274 XXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRG 333
FFDDLN++ E +F I AYIPI+ +RK+TP+T+Q +Q+ RRG
Sbjct: 185 ARGIGGLFFDDLNEWPFEKCFAFMQAVGKGFIDAYIPIVNRRKNTPYTEQQVEFQEFRRG 244
Query: 334 RYVEFNLV 341
RY EFNLV
Sbjct: 245 RYAEFNLV 252
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 131/241 (54%), Gaps = 9/241 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVXVDGAVIEKGGVNFSHVYGKGLPXSS 83
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 84 TERHPDIAG-----CNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 134
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 135 GGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGL 194
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 195 FFDDLNEWPFEKCFEFVQAVGKGYXDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 254
Query: 341 V 341
V
Sbjct: 255 V 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,784,508
Number of Sequences: 62578
Number of extensions: 451678
Number of successful extensions: 826
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 8
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)