Query 019034
Match_columns 347
No_of_seqs 145 out of 762
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1518 Coproporphyrinogen III 100.0 6E-130 1E-134 929.7 28.2 328 9-347 2-333 (382)
2 PRK05330 coproporphyrinogen II 100.0 1E-122 3E-127 883.0 29.3 249 88-347 5-253 (300)
3 PF01218 Coprogen_oxidas: Copr 100.0 4E-123 8E-128 885.2 14.5 247 91-346 1-247 (296)
4 COG0408 HemF Coproporphyrinoge 100.0 8E-120 2E-124 851.0 26.1 252 86-346 3-255 (303)
5 PLN02873 coproporphyrinogen-II 100.0 3E-113 7E-118 809.4 24.9 223 125-347 1-226 (274)
6 cd02901 Macro_Poa1p_like Macro 36.9 24 0.00053 29.7 2.0 16 249-265 39-54 (140)
7 PF04681 Bys1: Blastomyces yea 36.3 1.1E+02 0.0024 28.1 6.1 23 173-197 96-118 (155)
8 COG1949 Orn Oligoribonuclease 31.3 12 0.00027 35.0 -0.7 21 241-261 135-155 (184)
9 PHA02087 hypothetical protein 30.1 39 0.00085 27.6 2.0 23 272-300 60-82 (83)
10 PF12268 DUF3612: Protein of u 29.2 38 0.00083 31.4 2.1 42 210-253 84-126 (178)
11 PF05936 DUF876: Bacterial pro 29.1 1E+02 0.0022 31.4 5.3 111 93-206 276-391 (425)
12 TIGR03807 RR_fam_repeat putati 28.9 30 0.00065 23.2 1.0 10 333-342 9-18 (27)
13 PF03288 Pox_D5: Poxvirus D5 p 28.1 30 0.00066 26.9 1.1 14 252-265 25-38 (86)
14 PF12138 Spherulin4: Spherulat 26.5 54 0.0012 31.6 2.7 51 252-304 80-132 (253)
15 PF14226 DIOX_N: non-haem diox 26.2 29 0.00062 28.0 0.7 60 224-286 4-81 (116)
16 COG4820 EutJ Ethanolamine util 25.1 2.6E+02 0.0057 27.5 6.9 87 88-187 70-159 (277)
17 PF08121 Toxin_33: Waglerin fa 23.8 43 0.00093 21.3 0.9 11 221-231 1-11 (22)
18 PF06319 DUF1052: Protein of u 20.4 30 0.00064 31.9 -0.4 20 253-272 78-97 (157)
No 1
>KOG1518 consensus Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.8e-130 Score=929.71 Aligned_cols=328 Identities=60% Similarity=1.029 Sum_probs=298.1
Q ss_pred ccccceeeeecCcc---cccccCCCccccccCccccCCCCCcccceeeeccccccccCCCCCCCCcccccCCCccCCCCC
Q 019034 9 ASSSFTLFRVPSSW---STKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSS 85 (347)
Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~t~l~~~~~~~~~~~~ 85 (347)
++||++|..+|.-+ ++++.-+++. + .-++. .-+.+++++.++.+ |+++++..++|.++.+..++. .+..+
T Consensus 2 ~rh~~~l~s~gtfq~~~~~rg~~srg~-~---lgtgl-~~~~~~~~ah~~~a-i~pkv~gt~~~fm~~~~sD~~-~l~~~ 74 (382)
T KOG1518|consen 2 ARHSSTLLSSGTFQPFSSHRGHYSRGS-T---LGTGL-PIRNKPNLAHRCSA-IEPKVPGTERPFMAPPDSDDV-TLPSS 74 (382)
T ss_pred CccccCCcCCCcccccccccCCCCCCc-c---cccCc-ccccccchhhhhhh-hcCCCCCcccccccCCCCCcc-cCCCC
Confidence 56788887776655 5566555552 1 12333 44456788888886 999999999999988877544 35667
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHccc
Q 019034 86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKA 165 (347)
Q Consensus 86 ~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~ 165 (347)
+++||++||.+|++.|++||++||++||+.+|++|.|+|++||||||||||||+||||||||||||+|.|||+|+++|++
T Consensus 75 ~~~ir~~mE~lI~~~Qaevc~aleaidgg~kF~~D~W~r~eGGgGiscVlQDG~vFEKaGVnvSVV~G~l~p~Av~~mra 154 (382)
T KOG1518|consen 75 SSSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGVNVSVVYGVLPPEAVQAMRA 154 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeecCCCCCceEEEEccCCeeecCCceEEEEeccCCHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-CCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHH
Q 019034 166 AASDEKP-GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK 244 (347)
Q Consensus 166 ~~~~~~~-~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K 244 (347)
+++..+. +.+||||+|||+||||+|||+||+|+||||||++ +.+|. ++||||||+||||+|++|||++|||+++|
T Consensus 155 ~~k~lk~~~~lpFfA~GvS~ViHP~NPhaPT~HfNYRYFE~~---~~dg~-kqWWFGGG~DlTPsyl~eeD~~hFH~~~K 230 (382)
T KOG1518|consen 155 RHKNLKPTGPLPFFAAGVSSVIHPKNPHAPTTHFNYRYFETE---NADGV-KQWWFGGGADLTPSYLFEEDGKHFHQLHK 230 (382)
T ss_pred cccCCCCCCCCceeeccceeeeccCCCCCCceeeeeeEEEEe---cCCCc-EEEEecCCccCChhhhhhhhHHHHHHHHH
Confidence 9886554 7899999999999999999999999999999994 45565 78999999999999999999999999999
Q ss_pred HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 019034 245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH 324 (347)
Q Consensus 245 ~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e 324 (347)
+|||+|||++||+||||||+||||+||+|+|||||||||||++.|+|+.|+|+++|+++|+|||+|||+|||+++||++|
T Consensus 231 ~AcD~hdp~~YPrFKKWcDdYF~IkHR~E~RGiGGIFFDDld~~d~ee~f~fv~~Ca~avvPsYipiv~krkdmeft~~e 310 (382)
T KOG1518|consen 231 EACDKHDPTFYPRFKKWCDDYFYIKHRKERRGIGGIFFDDLDEPDPEELFSFVTDCARAVVPSYIPIVEKRKDMEFTEQE 310 (382)
T ss_pred HHhhccCCccchhHHhhhhhheeeeeccccccccceecccCCCCCHHHHHHHHHHHHHhhccccchhhhhhcCCCcChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccceeeeEeeecCCCC
Q 019034 325 KAWQQLRRGRYVEFNLVSNSPED 347 (347)
Q Consensus 325 r~wQl~RRGRYVEFNLvyDRGT~ 347 (347)
|+||||||||||||||+|||||.
T Consensus 311 k~wQ~lRRGrYvEFNliYDRGT~ 333 (382)
T KOG1518|consen 311 KQWQQLRRGRYVEFNLIYDRGTK 333 (382)
T ss_pred HHHHHHhccceEEEEEEEecCce
Confidence 99999999999999999999994
No 2
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=100.00 E-value=1.2e-122 Score=882.99 Aligned_cols=249 Identities=51% Similarity=0.980 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHccccc
Q 019034 88 SVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAA 167 (347)
Q Consensus 88 ~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~ 167 (347)
++++++++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|||+++|+++++++...
T Consensus 5 ~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~~~vl~~G~VfEK~gVN~S~V~G~~~p~~~~~~~~~~ 84 (300)
T PRK05330 5 PDKARVKAWLLGLQDRICAALEALDGEARFVEDSWQRPEGGGGRSRVLENGRVFEKAGVNFSHVHGEFLPPSATAHRPEL 84 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEeccccCCCCCceEEEEeCCcEEEecceEEEEEecCCCHHHHHHhccCC
Confidence 57899999999999999999999998889999999999999999999999999999999999999999999999888754
Q ss_pred cCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHHHhh
Q 019034 168 SDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSAC 247 (347)
Q Consensus 168 ~~~~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K~aC 247 (347)
.+.+|+||||||||||+||||||+|||||||++. .+|. .||||||+||||+|+++||++|||+++|++|
T Consensus 85 -----~g~~f~A~GiSlViHP~NP~vPtvH~N~R~f~~~----~~g~--~wWFGGG~DLTP~y~~~eD~~~FH~~~K~~C 153 (300)
T PRK05330 85 -----AGRSFEATGVSLVAHPRNPYVPTVHMNVRFFIAT----KPGP--VWWFGGGFDLTPYYPFEEDAVHFHRTAKDAC 153 (300)
T ss_pred -----CCCCeEEEeeeEEEecCCCCCCceeeEEEEEEEc----cCCC--ceeecCCccCCCCCCChHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999983 2333 6999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHH
Q 019034 248 DKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAW 327 (347)
Q Consensus 248 D~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~w 327 (347)
|+|++++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||+||+++|||++||+|
T Consensus 154 d~~~~~~Y~~fK~wCD~YFyi~HR~E~RGvGGiFfD~l~~~~~e~~f~F~~~vg~~fl~aY~pIv~rr~~~~~te~er~~ 233 (300)
T PRK05330 154 DPFGPEYYPRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNSPGFERDFAFTQAVGDAFLDAYLPIVERRKDTPYGEREREF 233 (300)
T ss_pred hccChhhhHHHHHHHHHhcChhhcCCCCCCCeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccceeeeEeeecCCCC
Q 019034 328 QQLRRGRYVEFNLVSNSPED 347 (347)
Q Consensus 328 Ql~RRGRYVEFNLvyDRGT~ 347 (347)
||+||||||||||||||||.
T Consensus 234 Ql~rRGRYvEFNLvyDRGT~ 253 (300)
T PRK05330 234 QLYRRGRYVEFNLVYDRGTL 253 (300)
T ss_pred HHhhccceEEEEeeeecCcH
Confidence 99999999999999999993
No 3
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=100.00 E-value=3.8e-123 Score=885.24 Aligned_cols=247 Identities=59% Similarity=1.132 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHccccccCC
Q 019034 91 ARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDE 170 (347)
Q Consensus 91 ~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~~~ 170 (347)
++|++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|||+++|+++++|+++.
T Consensus 1 ~~~~~~~~~lQ~~I~~~lE~~d~~~~F~~d~W~R~~gGgG~s~vl~~G~VfEKagVN~S~V~G~~~p~~a~~~~~~~--- 77 (296)
T PF01218_consen 1 QRVEAWFRDLQDRICAALEALDGKAKFKEDEWERPEGGGGRSRVLEDGNVFEKAGVNVSVVHGDLPPAAAKAMRPRL--- 77 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSEEEEEEEEETTSEEEEEEEEES-SSEEEEEEEEEEEEEEC-HHHHHHCHSTT---
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCceEEcccccCCCCCceEEEEeCCeEEEecceEEEEEeccCCHHHHHHhhccc---
Confidence 57999999999999999999999899999999999999999999999999999999999999999999999999866
Q ss_pred CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHHHhhhcC
Q 019034 171 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKF 250 (347)
Q Consensus 171 ~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K~aCD~h 250 (347)
.+.+|+||||||||||+||||||+|||||||.+ +.++....||||||+||||+|+++||++|||+++|++||+|
T Consensus 78 --~~~~f~A~GiSlViHP~NP~vPt~H~N~R~f~~----~~~~~~~~~WFGGG~DLTP~y~~~eD~~~FH~~~K~~cd~~ 151 (296)
T PF01218_consen 78 --AGQPFFATGISLVIHPRNPMVPTVHMNYRYFIA----EKEGKTGQWWFGGGADLTPYYLFEEDAKHFHQTLKEACDPH 151 (296)
T ss_dssp --TTSEEEEEEEEEEEEESSTTS-EEEEEEEEEEE----ECTTSEEEEEEEEEEEEE-SS--HHHHHHHHHHHHHHHGGG
T ss_pred --CCCceEEeccceEeecCCCCCCceeceeeEEee----ccccCccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999999999966 33456678999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHHHHH
Q 019034 251 DPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQL 330 (347)
Q Consensus 251 ~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~wQl~ 330 (347)
++++||+||+|||+|||||||+|+||||||||||||+.|+|++|+|+++||++||++|+|||+||+++|||++||+|||+
T Consensus 152 ~~~~Yp~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~~~~e~~f~f~~~vg~~fl~aY~pIv~rr~~~~~t~~er~~Ql~ 231 (296)
T PF01218_consen 152 DPSYYPRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNTGDFEKDFAFVKDVGEAFLPAYLPIVERRKDEPYTEEEREWQLY 231 (296)
T ss_dssp -TTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEE-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHH
T ss_pred ChHHHHHHHhhchhhcchhhcCCCcCCceeeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEeeecCCC
Q 019034 331 RRGRYVEFNLVSNSPE 346 (347)
Q Consensus 331 RRGRYVEFNLvyDRGT 346 (347)
||||||||||||||||
T Consensus 232 RRGRYvEFNLvyDRGT 247 (296)
T PF01218_consen 232 RRGRYVEFNLVYDRGT 247 (296)
T ss_dssp HHHHHHHHHHHT-HHH
T ss_pred hccceEEEEEEeccCc
Confidence 9999999999999998
No 4
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism]
Probab=100.00 E-value=7.7e-120 Score=851.01 Aligned_cols=252 Identities=52% Similarity=1.005 Sum_probs=243.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCC-CCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHcc
Q 019034 86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGG-GGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAK 164 (347)
Q Consensus 86 ~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~G-GGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~ 164 (347)
.++.++++++||++|||+||++||++|++.+|.+|.|+|++| |||+||||++|+||||+|||+|+|+|+++|+++++|+
T Consensus 3 ~~~~~~~~~~~~~~Lqd~Ic~~le~~dg~~~F~~d~W~r~~g~GgG~~~vl~~G~vFEk~GVn~S~V~G~~~P~~~~~~r 82 (303)
T COG0408 3 IEPDKQAVKAWLLNLQDEICAALEALDGEAKFVEDSWQREEGGGGGRSRVLMDGAVFEKGGVNFSTVFGEFSPESATAMR 82 (303)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhccceEEecccccccCCCCCCeeEEEecCceeeecCceeEEEecccChHHHhhCC
Confidence 457789999999999999999999999989999999999866 9999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHH
Q 019034 165 AAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK 244 (347)
Q Consensus 165 ~~~~~~~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K 244 (347)
++.+ +..|||||||||+||+||+|||+|||||||++. .+|...+||||||+||||+|+++||++|||+++|
T Consensus 83 p~~~-----g~~F~A~GiSlV~HP~NP~vPt~H~N~R~f~a~----~~~~~~vwWFGGGaDLTP~y~~~eD~~hfH~~~k 153 (303)
T COG0408 83 PELA-----GRRFFATGISLVAHPKNPYVPTVHLNVRYFEAE----KPGAEPVWWFGGGADLTPYYGFEEDAVHFHRAAK 153 (303)
T ss_pred chhc-----CCceEeeeeeEEEecCCCCCCceeeeEEEEEEe----cCCCCcceeecCCccCcccccchhHHHHHHHHHH
Confidence 8664 789999999999999999999999999999994 3456678999999999999999999999999999
Q ss_pred HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 019034 245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH 324 (347)
Q Consensus 245 ~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e 324 (347)
++||+|++++||+||+|||+|||||||+|+|||||||||||++.|+|.+|+|+++||++||++|+|||+||++++||++|
T Consensus 154 ~aC~~~~~~~YprfK~WCDeYFyLkHR~E~RGiGGiFfD~l~~~~~~~~Faf~qdvG~afl~aY~pIV~~r~~~~~te~e 233 (303)
T COG0408 154 DACDPHGPEDYPRFKKWCDEYFYLKHRNEPRGIGGIFFDDLNEPDFERDFAFTQDVGKAFLPAYLPIVERRKNMPWTERE 233 (303)
T ss_pred HHhcccChhhhhHHHHhhhhheeecccCCCCCcceeecccccCCCHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccceeeeEeeecCCC
Q 019034 325 KAWQQLRRGRYVEFNLVSNSPE 346 (347)
Q Consensus 325 r~wQl~RRGRYVEFNLvyDRGT 346 (347)
|+||||||||||||||||||||
T Consensus 234 r~fQl~RRGRYVEFNLvyDRGT 255 (303)
T COG0408 234 REFQLYRRGRYVEFNLVYDRGT 255 (303)
T ss_pred HHHHHHhccceEEEEEEEeccc
Confidence 9999999999999999999999
No 5
>PLN02873 coproporphyrinogen-III oxidase
Probab=100.00 E-value=3e-113 Score=809.42 Aligned_cols=223 Identities=79% Similarity=1.419 Sum_probs=209.8
Q ss_pred CCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHcccccc---CCCCCCCCeeEeeeEEEecCCCCCCCceeceee
Q 019034 125 PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAAS---DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYR 201 (347)
Q Consensus 125 ~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~---~~~~~~~~f~AtGiSlViHP~NP~vPTvH~N~R 201 (347)
++||||+||||+||+||||||||||+|||+++|+++++|+++.. ....++.+|+||||||||||+||||||+|||||
T Consensus 1 ~~gGGG~t~vl~~G~VfEK~gVN~S~V~G~~~p~~~~~~~~~~~~~~~~~~~~~~f~A~GiSlViHP~NP~vPtvH~N~R 80 (274)
T PLN02873 1 PGGGGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFFAAGLSSVMHPKNPMAPTFHFNYR 80 (274)
T ss_pred CCCCCCeEEEEECCeEEEecceEEEEEecCCCHHHHHhhCcccccccccccCCCCeEEEEeeEEEecCCCCCCceeeEEE
Confidence 46899999999999999999999999999999999999988752 112357899999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceee
Q 019034 202 YFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLF 281 (347)
Q Consensus 202 yfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIF 281 (347)
|||+.++.+..|....||||||+||||+|+++||++|||+++|++||+|++++||+||+|||+|||||||+|+|||||||
T Consensus 81 ~fe~~~~~~~~g~~~~wWFGGG~DLTP~y~~~eD~~~FH~~~K~aCd~~~~~~Y~~fK~wCD~YFyi~HR~E~RGvGGiF 160 (274)
T PLN02873 81 YFETDAPKDVPGAPRQWWFGGGTDLTPSYLFEEDVKHFHGTYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIF 160 (274)
T ss_pred EEEEeccccccCCCCCceecCcccCCCCCCChHHHHHHHHHHHHHHhccCchhhHHHHHHHHHhcchhhcCCCCCCceee
Confidence 99995544445666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHHHHHcccceeeeEeeecCCCC
Q 019034 282 FDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED 347 (347)
Q Consensus 282 FDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGT~ 347 (347)
|||||+.++|++|+|+++||++||++|+|||+||++++||++||+|||+||||||||||||||||.
T Consensus 161 fDdln~~~~e~~f~f~~~vg~afl~aY~pIv~rr~~~~~te~er~~Ql~RRGRYvEFNLvyDRGT~ 226 (274)
T PLN02873 161 FDDLNDRDQEDLLAFATDVANSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLVYDRGTT 226 (274)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHhCCCCCCHHHHHHHHHhCcceEEEEeeeecCch
Confidence 999999999999999999999999999999999999999999999999999999999999999993
No 6
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=36.94 E-value=24 Score=29.71 Aligned_cols=16 Identities=31% Similarity=0.785 Sum_probs=11.9
Q ss_pred cCCCCchHHHHHHhhhh
Q 019034 249 KFDPTFYPRFKKWCDDY 265 (347)
Q Consensus 249 ~h~~~~Y~~fKkwCD~Y 265 (347)
+| |..+..++++|.++
T Consensus 39 ~~-p~~~~~~~~~~~~~ 54 (140)
T cd02901 39 KF-PEFVEEYRAACKKK 54 (140)
T ss_pred HC-cHHHHHHHHHHHhc
Confidence 44 66788888888874
No 7
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=36.26 E-value=1.1e+02 Score=28.11 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred CCCCeeEeeeEEEecCCCCCCCcee
Q 019034 173 GPIPFFAAGISSVLHPKNPFAPTLH 197 (347)
Q Consensus 173 ~~~~f~AtGiSlViHP~NP~vPTvH 197 (347)
.|.|| .|=.|+++|.+|.+|.|+
T Consensus 96 fGdPF--~G~~v~v~ps~~~Cp~I~ 118 (155)
T PF04681_consen 96 FGDPF--AGHKVTVNPSDPSCPSIV 118 (155)
T ss_pred cCCCc--CCCEEEEecCCCCCCceE
Confidence 46788 455566799999999998
No 8
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]
Probab=31.28 E-value=12 Score=34.96 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.9
Q ss_pred HHHHHhhhcCCCCchHHHHHH
Q 019034 241 STQKSACDKFDPTFYPRFKKW 261 (347)
Q Consensus 241 ~~~K~aCD~h~~~~Y~~fKkw 261 (347)
.++|++|.++.|+.|..|||-
T Consensus 135 STlKELa~RW~P~i~~~~~K~ 155 (184)
T COG1949 135 STLKELARRWNPEILAGFKKG 155 (184)
T ss_pred HHHHHHHHhhCcHhhhccccc
Confidence 589999999999999999973
No 9
>PHA02087 hypothetical protein
Probab=30.13 E-value=39 Score=27.64 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=17.7
Q ss_pred CCcCccceeeccCCCCcChhHHHHHHHHH
Q 019034 272 GERRGLGGLFFDDLNDYDQEMLLSFATEC 300 (347)
Q Consensus 272 ~E~RGIGGIFFDdLn~~d~e~~faF~~~v 300 (347)
-|.-|=|||-||| |..|.|...+
T Consensus 60 pe~~ggggi~fdd------eem~~f~d~v 82 (83)
T PHA02087 60 PESEGGGGITFDD------EEMFHFFDEV 82 (83)
T ss_pred CcccCCCceeecc------HHHHHHHHhh
Confidence 3677889999998 7777776543
No 10
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=29.22 E-value=38 Score=31.36 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCCCCcceeccccCCCCCCCC-hhhHHHHHHHHHHhhhcCCCC
Q 019034 210 DTPGAPRQWWFGGGTDLTPAYIF-EEDVKHFHSTQKSACDKFDPT 253 (347)
Q Consensus 210 ~~~g~~~~wWFGGG~DLTP~Y~~-eeDa~hFH~~~K~aCD~h~~~ 253 (347)
|..|+..+ .=-|+||+|.+.- --|+...-+.||++|-..+.+
T Consensus 84 D~Agn~hV--LCaGIDLNPAi~aQG~da~~iA~~lK~~Cv~~gG~ 126 (178)
T PF12268_consen 84 DLAGNNHV--LCAGIDLNPAIDAQGGDALSIAEELKQACVSNGGS 126 (178)
T ss_pred cCCCCcee--EEecccCCHhHhhcCCCHHHHHHHHHHHHHhCCCC
Confidence 44455433 4459999999854 459999999999999988643
No 11
>PF05936 DUF876: Bacterial protein of unknown function (DUF876); InterPro: IPR010263 This family consists of a series of hypothetical bacterial sequences of unknown function. They are associated with a type VI secretion locus suggesting a possible virulence role [].
Probab=29.15 E-value=1e+02 Score=31.43 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHH-ccccccCCC
Q 019034 93 FEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRA-AKAAASDEK 171 (347)
Q Consensus 93 ~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~-~~~~~~~~~ 171 (347)
...-|..|.+.|.+.|+.+- ..+...-.+++. +.|=..+.+.|-.+++++-.=+.+ +++++++-..+ .....+...
T Consensus 276 l~~~F~~l~~~lr~~L~~v~-~~~~~~l~l~~~-~~g~~~~~~~d~~l~~~~~f~LaV-~a~~~~~~l~~~~p~~~Kigs 352 (425)
T PF05936_consen 276 LGPCFSPLFDLLRQLLSEVI-EQPAISLPLEQR-SDGIYVAQLPDSSLLEGARFYLAV-RADMPAEELREQFPQQAKIGS 352 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCCcEEEEEEEC-CCCEEEEEcCChhhccCceEEEEE-eCCCCHHHHHHHHHhhcEECC
Confidence 34455677777778887773 234555566644 345667788888888887776655 88888874332 222111000
Q ss_pred CC----CCCeeEeeeEEEecCCCCCCCceeceeeEEEec
Q 019034 172 PG----PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206 (347)
Q Consensus 172 ~~----~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~ 206 (347)
.+ =..----||-+.-=|+-|-.=.+|.++.||+++
T Consensus 353 ~~~i~~Lv~~aLpGi~L~~l~~~P~~lp~~~g~~YF~ld 391 (425)
T PF05936_consen 353 PEQIRELVNRALPGIPLQHLPRPPRQLPYRSGYVYFELD 391 (425)
T ss_pred HHHHHHHHHHhCCCCcccccCCCCccCccCCCCEEEEEc
Confidence 00 001124588888889999888899999999994
No 12
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=28.89 E-value=30 Score=23.25 Aligned_cols=10 Identities=50% Similarity=0.926 Sum_probs=8.4
Q ss_pred cceeeeEeee
Q 019034 333 GRYVEFNLVS 342 (347)
Q Consensus 333 GRYVEFNLvy 342 (347)
|+|+|||.+-
T Consensus 9 G~y~~~d~~v 18 (27)
T TIGR03807 9 GIYLEFDAVV 18 (27)
T ss_pred EEEEeeeeEE
Confidence 8999999764
No 13
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=28.06 E-value=30 Score=26.92 Aligned_cols=14 Identities=29% Similarity=1.120 Sum_probs=12.3
Q ss_pred CCchHHHHHHhhhh
Q 019034 252 PTFYPRFKKWCDDY 265 (347)
Q Consensus 252 ~~~Y~~fKkwCD~Y 265 (347)
..+|..||.||++.
T Consensus 25 ~~lY~~Y~~wc~~n 38 (86)
T PF03288_consen 25 KDLYDAYKEWCEEN 38 (86)
T ss_dssp TBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 36899999999986
No 14
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=26.54 E-value=54 Score=31.58 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCchHHHHHHhhhhcCcCCCCCc--CccceeeccCCCCcChhHHHHHHHHHHhhh
Q 019034 252 PTFYPRFKKWCDDYFYIKHRGER--RGLGGLFFDDLNDYDQEMLLSFATECANSV 304 (347)
Q Consensus 252 ~~~Y~~fKkwCD~YFyIpHR~E~--RGIGGIFFDdLn~~d~e~~faF~~~vg~af 304 (347)
.---..=++.-|+|.--.-..+. =+|.|||||...... +...+.+++.+.+
T Consensus 80 ~R~~~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE~p~~~--~~~~y~~~l~~~v 132 (253)
T PF12138_consen 80 SRPLSEVKADIDTYASWYGQSEDYGYRVDGIFFDEAPNDY--ANLPYYQNLYNYV 132 (253)
T ss_pred CCCHHHHHHHHHHHhhccccccCCCcccceEEEecCCCcH--HHHHHHHHHHHHH
Confidence 33345556777777666544332 589999999875432 4445555554443
No 15
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=26.23 E-value=29 Score=27.96 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=43.7
Q ss_pred cCCCCCCCChhhHHHHHHHHHHhhhcCC----------CCchHHHHHHhhhhcCcC--------CCCCcCccceeeccCC
Q 019034 224 TDLTPAYIFEEDVKHFHSTQKSACDKFD----------PTFYPRFKKWCDDYFYIK--------HRGERRGLGGLFFDDL 285 (347)
Q Consensus 224 ~DLTP~Y~~eeDa~hFH~~~K~aCD~h~----------~~~Y~~fKkwCD~YFyIp--------HR~E~RGIGGIFFDdL 285 (347)
+||.+ ..++....-+.+.+||..+| .+...+..++|.++|-+| .-+..||-++..-..+
T Consensus 4 IDls~---~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~~~~~~ 80 (116)
T PF14226_consen 4 IDLSP---DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSPPGSEST 80 (116)
T ss_dssp EEHGG---CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEESEEECC
T ss_pred EECCC---CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcccccCCcccc
Confidence 36666 56777888888999997664 245788899999999887 3345688777665555
Q ss_pred C
Q 019034 286 N 286 (347)
Q Consensus 286 n 286 (347)
.
T Consensus 81 ~ 81 (116)
T PF14226_consen 81 D 81 (116)
T ss_dssp T
T ss_pred C
Confidence 3
No 16
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=25.07 E-value=2.6e+02 Score=27.54 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCC-CCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHcccc
Q 019034 88 SVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGG-GGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAA 166 (347)
Q Consensus 88 ~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~G-GGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~ 166 (347)
+.++.++ .++.|-++.-+.| +-+|.+-.=.-|.| -+|--|+.- ||+|-||..+|.|--+- -+++.-+...
T Consensus 70 df~eave-iVrrlkd~lEk~l-----Gi~~tha~taiPPGt~~~~~ri~i--NViESAGlevl~vlDEP-TAaa~vL~l~ 140 (277)
T COG4820 70 DFFEAVE-IVRRLKDTLEKQL-----GIRFTHAATAIPPGTEQGDPRISI--NVIESAGLEVLHVLDEP-TAAADVLQLD 140 (277)
T ss_pred ehhhHHH-HHHHHHHHHHHhh-----CeEeeeccccCCCCccCCCceEEE--EeecccCceeeeecCCc-hhHHHHhccC
Confidence 3444443 3455554443333 34566554444555 345556654 79999999999985432 2222222222
Q ss_pred cc--CCCCCCCCeeEeeeEEEec
Q 019034 167 AS--DEKPGPIPFFAAGISSVLH 187 (347)
Q Consensus 167 ~~--~~~~~~~~f~AtGiSlViH 187 (347)
.. -+-.+| .||||+|=.
T Consensus 141 dg~VVDiGGG----TTGIsi~kk 159 (277)
T COG4820 141 DGGVVDIGGG----TTGISIVKK 159 (277)
T ss_pred CCcEEEeCCC----cceeEEEEc
Confidence 11 011233 789998754
No 17
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=23.81 E-value=43 Score=21.35 Aligned_cols=11 Identities=55% Similarity=1.029 Sum_probs=9.4
Q ss_pred ccccCCCCCCC
Q 019034 221 GGGTDLTPAYI 231 (347)
Q Consensus 221 GGG~DLTP~Y~ 231 (347)
||--||-|+|+
T Consensus 1 ggkpdlrpcyp 11 (22)
T PF08121_consen 1 GGKPDLRPCYP 11 (22)
T ss_pred CCCCccccCCC
Confidence 67789999986
No 18
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=20.35 E-value=30 Score=31.86 Aligned_cols=20 Identities=20% Similarity=0.873 Sum_probs=14.2
Q ss_pred CchHHHHHHhhhhcCcCCCC
Q 019034 253 TFYPRFKKWCDDYFYIKHRG 272 (347)
Q Consensus 253 ~~Y~~fKkwCD~YFyIpHR~ 272 (347)
.-++.|..|||++||--|-.
T Consensus 78 ~KW~dY~~~CDRfyfAv~~~ 97 (157)
T PF06319_consen 78 RKWPDYLDWCDRFYFAVPPD 97 (157)
T ss_dssp TTGGGGGGG-SEEEEEE-TT
T ss_pred CcchHHHHhhceeEEecCCC
Confidence 45788999999999866643
Done!