Query 019034
Match_columns 347
No_of_seqs 145 out of 762
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1txn_A Coproporphyrinogen III 100.0 1E-127 4E-132 923.0 21.4 263 81-347 4-278 (328)
2 2aex_A Coproporphyrinogen III 100.0 2E-127 6E-132 926.6 18.4 260 84-347 35-296 (346)
3 1vju_A Coproporphyrinogen III 100.0 2E-125 5E-130 902.2 15.3 251 87-346 10-260 (309)
4 2k4z_A DSRR; ISCA/SUFA/HESB li 46.6 56 0.0019 26.9 6.9 56 126-196 55-119 (125)
5 3bdk_A D-mannonate dehydratase 30.2 35 0.0012 33.3 3.6 49 252-301 267-322 (386)
6 2r7r_A RNA-dependent RNA polym 27.5 23 0.00079 38.6 1.9 53 94-150 645-697 (1095)
7 1q8d_A GDNF family receptor al 20.0 54 0.0018 27.4 2.3 10 223-232 56-65 (108)
8 2oa4_A SIR5; structure, struct 19.9 59 0.002 26.5 2.6 23 242-265 52-74 (101)
9 1pzr_A Erythronolide synthase; 19.7 25 0.00086 26.2 0.3 13 218-230 12-24 (60)
10 1f32_A Major pepsin inhibitor 16.6 18 0.00061 31.7 -1.3 40 277-333 88-127 (149)
No 1
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=100.00 E-value=1.3e-127 Score=922.99 Aligned_cols=263 Identities=49% Similarity=0.978 Sum_probs=241.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeccccc-CCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHH
Q 019034 81 SSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSR-PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEA 159 (347)
Q Consensus 81 ~~~~~~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R-~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a 159 (347)
+.++++++||++|++||+.||++||++||++|| ++|++|.|+| ++||||+||||+||+||||||||||+|||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg-~~F~~d~W~R~~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~ 82 (328)
T 1txn_A 4 PQDPRNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAA 82 (328)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEECCCCCSCCCSSSCEEEEESCSSEEEEEEEEEEEEEEECHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEecceecCCCCCCeEEEEeCCcEEEecceEEEEEeccCCHHH
Confidence 345667789999999999999999999999997 7999999999 99999999999999999999999999999999999
Q ss_pred HHHccccccCC-C----------CCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCC
Q 019034 160 YRAAKAAASDE-K----------PGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTP 228 (347)
Q Consensus 160 ~~~~~~~~~~~-~----------~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP 228 (347)
+++|+++++.. . ..+.+||||||||||||+||||||+|||||||++. +++|....||||||+||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~---~~~g~~~~wWFGGG~DLTP 159 (328)
T 1txn_A 83 VSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETW---NQDGTPQTWWFGGGADLTP 159 (328)
T ss_dssp HHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE---CTTSSEEEEEEEEEEEEEC
T ss_pred HHhhcccccccccccccccccccCCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEEe---cCCCCccceeecCCccCCC
Confidence 99998855432 1 45789999999999999999999999999999993 3457667899999999999
Q ss_pred CCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhc
Q 019034 229 AYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAY 308 (347)
Q Consensus 229 ~Y~~eeDa~hFH~~~K~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY 308 (347)
+|+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||+||
T Consensus 160 ~y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~~~~e~~faf~~~vg~afl~aY 239 (328)
T 1txn_A 160 SYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSY 239 (328)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHcccceeeeEeeecCCCC
Q 019034 309 IPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED 347 (347)
Q Consensus 309 ~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGT~ 347 (347)
+|||+||+++|||++||+|||+||||||||||||||||.
T Consensus 240 ~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~ 278 (328)
T 1txn_A 240 LTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQ 278 (328)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC--------
T ss_pred HHHHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCch
Confidence 999999999999999999999999999999999999993
No 2
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=100.00 E-value=1.7e-127 Score=926.60 Aligned_cols=260 Identities=53% Similarity=1.049 Sum_probs=248.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHc
Q 019034 84 SSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAA 163 (347)
Q Consensus 84 ~~~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~ 163 (347)
+++++||++|++||+.||++||++||++||+++|++|.|+|++||||+||||+||+||||||||||+|||+++|+++++|
T Consensus 35 ~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~~~~~ 114 (346)
T 2aex_A 35 RRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQM 114 (346)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEEEEEEECCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEEEEeccCChHHHHhc
Confidence 45678999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred cccccCC--CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHH
Q 019034 164 KAAASDE--KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHS 241 (347)
Q Consensus 164 ~~~~~~~--~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~ 241 (347)
+++++.. ..++.+|+||||||||||+||||||+|||||||++. .+|...+||||||+||||+|+++||++|||+
T Consensus 115 ~~~~~~l~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~----~~g~~~~wWFGGG~DLTP~Y~~~eD~~hFH~ 190 (346)
T 2aex_A 115 RSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE----EADGNKQWWFGGGCDLTPTYLNQEDAVHFHR 190 (346)
T ss_dssp HHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE----CSTTCEEEEEEEEEEEECSSCCHHHHHHHHH
T ss_pred CCcccccccccCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEee----cCCCCCceeecCCccCCCCCCCHHHHHHHHH
Confidence 9975432 346789999999999999999999999999999994 3466678999999999999999999999999
Q ss_pred HHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCC
Q 019034 242 TQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFT 321 (347)
Q Consensus 242 ~~K~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~t 321 (347)
++|++||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||+||+++|||
T Consensus 191 ~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGVGGIFfDdln~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~t 270 (346)
T 2aex_A 191 TLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFT 270 (346)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECCSCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhhcChHhHHHHHHHHHHhcChhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccceeeeEeeecCCCC
Q 019034 322 DQHKAWQQLRRGRYVEFNLVSNSPED 347 (347)
Q Consensus 322 e~er~wQl~RRGRYVEFNLvyDRGT~ 347 (347)
++||+|||+||||||||||||||||.
T Consensus 271 e~er~~Ql~RRGRYVEFNLvyDRGT~ 296 (346)
T 2aex_A 271 PQEKLWQQLRRGRYVEFNLLYDRGTK 296 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHhhCCeeeEEEEEeecCcc
Confidence 99999999999999999999999994
No 3
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=100.00 E-value=1.6e-125 Score=902.17 Aligned_cols=251 Identities=46% Similarity=0.870 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHcccc
Q 019034 87 SSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAA 166 (347)
Q Consensus 87 ~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~ 166 (347)
+-.++++++||+.||++||++||++||+++|++|.|+|++||||+||||+||+||||||||||+|+|+++|++++++++.
T Consensus 10 ~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~~~~~~p~ 89 (309)
T 1vju_A 10 SLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLPMSSTERHPD 89 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEEEEeCCCChHHHHHhccc
Confidence 35789999999999999999999999888999999999999999999999999999999999999998666666667664
Q ss_pred ccCCCCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHHHh
Q 019034 167 ASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246 (347)
Q Consensus 167 ~~~~~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K~a 246 (347)
. .+.+|+||||||||||+||||||+|||||||+++ ++|....||||||+||||+|+++||++|||+++|++
T Consensus 90 ~-----~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~----~~g~~~~wWFGGG~DLTP~y~~~eD~~hFH~~~k~a 160 (309)
T 1vju_A 90 I-----AGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAE----REGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDL 160 (309)
T ss_dssp C-----TTCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE----ETTEEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred c-----CCCCeEEEEEeEEEecCCCCCCceeeeEEEEEee----cCCCCcceeecCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 3 3569999999999999999999999999999993 346556799999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHH
Q 019034 247 CDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326 (347)
Q Consensus 247 CD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~ 326 (347)
||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||++|+|||+||+++|||++||+
T Consensus 161 Cd~~~~~~Yp~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~te~er~ 240 (309)
T 1vju_A 161 CKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVE 240 (309)
T ss_dssp HGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HhhcCchhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccceeeeEeeecCCC
Q 019034 327 WQQLRRGRYVEFNLVSNSPE 346 (347)
Q Consensus 327 wQl~RRGRYVEFNLvyDRGT 346 (347)
|||+||||||||||||||||
T Consensus 241 ~Ql~RRGRYVEFNLvyDRGT 260 (309)
T 1vju_A 241 FQEFRRGRYAEFNLVIDRGT 260 (309)
T ss_dssp HHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhccceEEEEeeeecCc
Confidence 99999999999999999998
No 4
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=46.55 E-value=56 Score=26.88 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCceEEEee------CCceEEeeeeEEEEEeccCCHHHHHHccccccCCCCCCCCeeE---eeeEEEecCCCCCCCce
Q 019034 126 GGGGGISRVLQ------DGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFA---AGISSVLHPKNPFAPTL 196 (347)
Q Consensus 126 ~GGGG~s~Vl~------~G~VfEKaGVNvS~V~G~lpp~a~~~~~~~~~~~~~~~~~f~A---tGiSlViHP~NP~vPTv 196 (347)
+|| |.+..|. +-.|+|..||.| -+.+..+.-+.+. -..|.- .|-..++ .||++.+.
T Consensus 55 ~gG-G~~Y~l~l~~~~~~D~v~e~~Gv~v-----~VD~~s~~~L~G~-------~IDy~~~~l~g~gF~~--~NPna~~~ 119 (125)
T 2k4z_A 55 PDG-SIDYRMGFDDLTEDDIRLTSEGVEI-----VIAPDYVSLLDQT-------TLDYVELEPGQFHFIF--LNPRDPTY 119 (125)
T ss_dssp TTS-CEEEEEEEECCCSSSCEEECSSCEE-----ECCTTTHHHHTTE-------EEEEEEEETTEEEEEE--ECSSSCSS
T ss_pred CCC-CEEEEEEecCCCCCceEEEECCEEE-----EEeHHHHHhhCCC-------EEEEEeCCCCcCeEEE--CCCCCCcc
Confidence 445 8888774 346999999877 3444444444432 123333 2445566 49988753
No 5
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=30.20 E-value=35 Score=33.26 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=34.3
Q ss_pred CCchHHHHHHh--hhhcCcCCCCCcCccceeeccCCC-----CcChhHHHHHHHHHH
Q 019034 252 PTFYPRFKKWC--DDYFYIKHRGERRGLGGLFFDDLN-----DYDQEMLLSFATECA 301 (347)
Q Consensus 252 ~~~Y~~fKkwC--D~YFyIpHR~E~RGIGGIFFDdLn-----~~d~e~~faF~~~vg 301 (347)
.+...-+++.. |+=.++.=|+-.|++.| |.+..- +-|+...++-.+++|
T Consensus 267 ~D~~~~i~~~~~~~RI~hvHlkDv~~~~~g-f~e~~~g~g~G~vD~~~i~~aL~~~g 322 (386)
T 3bdk_A 267 NDVLAMTEYALKRNRINFMHTRNVTAGAWG-FQETAHLSQAGDIDMNAVVKLLVDYD 322 (386)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCCEEEETTE-EEECCSSGGGSSCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCCcCeEEEEeecCCCCCCCC-ccccCCCcCCCCcCHHHHHHHHHHhC
Confidence 45567788888 88888877777777777 665432 236777777777766
No 6
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Probab=27.55 E-value=23 Score=38.59 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEE
Q 019034 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSV 150 (347)
Q Consensus 94 e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~ 150 (347)
++++..+|+.|.+.-..+.- +-+.=. .--|=.=--|-+.+|++|||||||+=.
T Consensus 645 ~q~i~~vs~~vk~~YsrmNa--kVKALa--S~tGlEmAKRyIagGkIFfRagIniln 697 (1095)
T 2r7r_A 645 KQMIQDVSNDVRETYARMNA--KVKALV--STVGIEIAKRYIAGGKIFFRAGINLLN 697 (1095)
T ss_dssp HHHHHHHHHHHHHHHHTTTC--CCEEEE--ESSCEECSSCEEETTEEECCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhH--HHHHHH--hhhhHHHHHHHhhcccceecccccccc
Confidence 46778899999888888763 222211 111211112455689999999999843
No 7
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=19.99 E-value=54 Score=27.36 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=6.7
Q ss_pred ccCCCCCCCC
Q 019034 223 GTDLTPAYIF 232 (347)
Q Consensus 223 G~DLTP~Y~~ 232 (347)
|+++||-|+.
T Consensus 56 Gt~mTPNYvd 65 (108)
T 1q8d_A 56 GTVMTPNYVD 65 (108)
T ss_dssp TSTTCCC---
T ss_pred ccccCccccc
Confidence 8999999976
No 8
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=19.95 E-value=59 Score=26.47 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHhhhcCCCCchHHHHHHhhhh
Q 019034 242 TQKSACDKFDPTFYPRFKKWCDDY 265 (347)
Q Consensus 242 ~~K~aCD~h~~~~Y~~fKkwCD~Y 265 (347)
++.+||.+|+= -...|.+|+..|
T Consensus 52 S~~EAa~ry~I-s~~ei~~W~r~y 74 (101)
T 2oa4_A 52 TLAEAKQTYGL-SDEEFNSWVSAL 74 (101)
T ss_dssp CHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-CHHHHHHHHHHH
Confidence 47899999999 689999999998
No 9
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=19.74 E-value=25 Score=26.23 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=10.6
Q ss_pred ceeccccCCCCCC
Q 019034 218 WWFGGGTDLTPAY 230 (347)
Q Consensus 218 wWFGGG~DLTP~Y 230 (347)
.-||||-|||=.=
T Consensus 12 ~~~~~~~~~~~tg 24 (60)
T 1pzr_A 12 QRFGGGEDLLMSG 24 (60)
T ss_dssp HHHHCCCSSCCCC
T ss_pred HHhcCCchHHhcC
Confidence 3699999999764
No 10
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=16.62 E-value=18 Score=31.67 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=24.6
Q ss_pred cceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHHHHHHccc
Q 019034 277 LGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRG 333 (347)
Q Consensus 277 IGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~er~wQl~RRG 333 (347)
|||.|--+|...+.++.-.|.+.+. .|-|+++.||+-|.|
T Consensus 88 ~gg~~~RdLT~~Eq~EL~~y~~k~~-----------------a~eer~e~~~~~~~~ 127 (149)
T 1f32_A 88 IDQKYVRDLTAKDHAEVQTFREKIA-----------------AFEEQQENQPPSSGM 127 (149)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHHHH-----------------HHHHC----------
T ss_pred ECCEeeccCCHHHHHHHHHHHHHHH-----------------HHHHHHhccchhhcC
Confidence 6899999999888888999999988 233556777776654
Done!