Query 019035
Match_columns 347
No_of_seqs 231 out of 1229
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 7.2E-52 1.6E-56 391.0 12.3 238 72-347 33-292 (294)
2 COG2119 Predicted membrane pro 100.0 3E-47 6.5E-52 344.6 20.4 183 132-347 2-186 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 2.5E-24 5.5E-29 171.2 7.5 76 264-339 1-78 (78)
4 PF01169 UPF0016: Uncharacteri 99.8 3.7E-21 8E-26 153.1 8.2 75 134-214 1-78 (78)
5 COG2119 Predicted membrane pro 99.7 5.8E-18 1.3E-22 154.2 9.4 85 262-346 2-86 (190)
6 KOG2881 Predicted membrane pro 99.6 1.7E-16 3.7E-21 151.3 7.0 88 259-346 64-151 (294)
7 COG4280 Predicted membrane pro 97.9 4.7E-05 1E-09 71.5 9.0 173 153-343 23-196 (236)
8 PRK11469 hypothetical protein; 97.9 0.00094 2E-08 61.3 16.7 137 175-346 48-185 (188)
9 PF01810 LysE: LysE type trans 97.6 0.0048 1E-07 54.6 16.8 176 151-346 11-191 (191)
10 TIGR02840 spore_YtaF putative 97.6 0.0031 6.8E-08 58.4 15.5 45 173-223 39-84 (206)
11 COG1971 Predicted membrane pro 97.4 0.0042 9.2E-08 57.7 14.1 42 305-347 147-188 (190)
12 PF03741 TerC: Integral membra 97.2 0.035 7.7E-07 50.8 16.8 164 147-345 12-183 (183)
13 COG1280 RhtB Putative threonin 96.8 0.27 5.8E-06 45.4 19.1 181 147-346 20-207 (208)
14 TIGR00949 2A76 The Resistance 96.5 0.24 5.2E-06 43.8 16.5 65 152-220 7-75 (185)
15 TIGR03718 R_switched_Alx integ 96.3 0.058 1.3E-06 53.4 12.0 183 137-346 64-270 (302)
16 PRK09304 arginine exporter pro 96.1 1.1 2.3E-05 41.1 19.1 68 150-221 22-91 (207)
17 COG0861 TerC Membrane protein 96.0 0.13 2.9E-06 49.7 12.9 190 133-346 15-212 (254)
18 TIGR03716 R_switched_YkoY inte 95.7 0.57 1.2E-05 44.3 15.3 158 147-346 9-174 (215)
19 PF03596 Cad: Cadmium resistan 95.7 0.06 1.3E-06 50.0 8.5 152 163-345 25-181 (191)
20 TIGR03717 R_switched_YjbE inte 95.5 0.79 1.7E-05 41.8 15.2 153 147-345 14-175 (176)
21 PRK10229 threonine efflux syst 95.4 2 4.3E-05 38.9 19.5 70 147-220 19-92 (206)
22 PRK10520 rhtB homoserine/homos 95.3 1.9 4.1E-05 39.0 17.1 71 146-220 19-93 (205)
23 PRK10958 leucine export protei 95.2 2.5 5.4E-05 38.9 18.1 69 149-221 26-98 (212)
24 TIGR00145 FTR1 family protein. 95.0 2.1 4.6E-05 42.0 17.3 159 163-344 38-200 (283)
25 PRK10323 cysteine/O-acetylseri 94.2 4.2 9.1E-05 36.9 18.1 71 146-220 19-93 (195)
26 TIGR02840 spore_YtaF putative 94.2 0.09 1.9E-06 48.8 5.4 53 295-347 31-83 (206)
27 PF01914 MarC: MarC family int 94.1 0.85 1.8E-05 42.3 11.6 64 283-346 129-198 (203)
28 COG0730 Predicted permeases [G 93.8 5.7 0.00012 37.1 17.3 44 303-346 211-254 (258)
29 PRK10019 nickel/cobalt efflux 93.7 6.2 0.00014 38.8 17.3 72 268-346 197-273 (279)
30 COG4280 Predicted membrane pro 93.2 0.27 5.9E-06 46.7 6.8 79 261-344 3-83 (236)
31 PF03239 FTR1: Iron permease F 92.8 1.9 4.1E-05 42.2 12.4 169 163-344 35-215 (306)
32 PRK10995 inner membrane protei 92.6 2.5 5.5E-05 39.5 12.4 37 310-346 173-212 (221)
33 PRK00293 dipZ thiol:disulfide 89.7 16 0.00034 39.0 16.2 153 167-345 216-381 (571)
34 PRK10621 hypothetical protein; 89.4 19 0.00042 34.0 16.7 47 301-347 209-255 (266)
35 TIGR00948 2a75 L-lysine export 89.2 15 0.00033 32.4 16.5 65 153-221 11-77 (177)
36 PRK11469 hypothetical protein; 88.7 0.92 2E-05 41.8 5.5 42 305-347 48-89 (188)
37 PRK11111 hypothetical protein; 88.6 5.5 0.00012 37.5 10.7 47 300-346 155-204 (214)
38 COG4300 CadD Predicted permeas 88.2 2.9 6.2E-05 39.4 8.4 41 305-345 148-193 (205)
39 TIGR00427 membrane protein, Ma 81.8 25 0.00054 32.7 11.5 48 299-346 150-200 (201)
40 COG2095 MarC Multiple antibiot 80.8 25 0.00054 33.1 11.1 167 145-346 20-195 (203)
41 PF02659 DUF204: Domain of unk 75.4 8.1 0.00018 29.3 5.2 37 302-339 31-67 (67)
42 COG1971 Predicted membrane pro 72.0 8.6 0.00019 36.1 5.5 43 304-347 47-89 (190)
43 PF13386 DsbD_2: Cytochrome C 71.8 78 0.0017 28.6 14.4 27 314-341 173-199 (199)
44 PRK10739 putative antibiotic t 70.4 85 0.0019 29.3 11.7 46 301-346 142-190 (197)
45 PF01925 TauE: Sulfite exporte 69.1 17 0.00036 33.0 6.7 45 297-341 195-239 (240)
46 COG1283 NptA Na+/phosphate sym 63.9 53 0.0011 35.4 10.0 90 203-311 9-103 (533)
47 PF02683 DsbD: Cytochrome C bi 61.2 1.3E+02 0.0028 27.4 14.9 46 166-218 47-92 (211)
48 TIGR00704 NaPi_cotrn_rel Na/Pi 58.7 95 0.0021 31.0 10.2 124 203-345 6-148 (307)
49 PF02535 Zip: ZIP Zinc transpo 57.9 1.1E+02 0.0024 28.8 10.3 53 135-188 201-253 (317)
50 PF03741 TerC: Integral membra 57.5 34 0.00074 31.4 6.5 51 161-219 132-182 (183)
51 KOG2325 Predicted transporter/ 56.0 67 0.0015 34.2 9.1 79 263-341 267-350 (488)
52 TIGR00779 cad cadmium resistan 55.7 39 0.00084 31.8 6.6 55 290-345 21-75 (193)
53 COG0730 Predicted permeases [G 54.7 54 0.0012 30.6 7.5 53 293-345 68-120 (258)
54 PF01810 LysE: LysE type trans 54.1 38 0.00083 29.8 6.1 55 292-346 25-81 (191)
55 TIGR00779 cad cadmium resistan 51.9 20 0.00044 33.7 4.1 52 160-217 21-72 (193)
56 PF03596 Cad: Cadmium resistan 49.7 90 0.002 29.2 8.0 53 292-345 24-76 (191)
57 TIGR03716 R_switched_YkoY inte 49.3 69 0.0015 30.5 7.3 53 161-221 122-174 (215)
58 PF02659 DUF204: Domain of unk 48.9 74 0.0016 24.0 6.1 35 174-214 33-67 (67)
59 PRK10621 hypothetical protein; 48.8 54 0.0012 31.0 6.6 49 296-344 75-123 (266)
60 COG0861 TerC Membrane protein 48.4 77 0.0017 30.9 7.6 53 161-221 160-212 (254)
61 PF01925 TauE: Sulfite exporte 45.5 42 0.00091 30.4 5.1 44 302-345 67-110 (240)
62 PRK00259 intracellular septati 45.2 63 0.0014 29.8 6.2 46 297-344 22-67 (179)
63 PF11700 ATG22: Vacuole efflux 44.1 4E+02 0.0086 27.8 12.9 19 130-148 77-95 (477)
64 TIGR00949 2A76 The Resistance 41.8 81 0.0018 27.7 6.2 53 292-344 20-74 (185)
65 TIGR03717 R_switched_YjbE inte 41.5 1.1E+02 0.0023 28.1 7.0 49 163-219 126-174 (176)
66 PRK10229 threonine efflux syst 41.0 2E+02 0.0043 25.9 8.7 66 280-345 22-92 (206)
67 TIGR00704 NaPi_cotrn_rel Na/Pi 40.0 3.2E+02 0.0069 27.3 10.6 119 202-338 130-255 (307)
68 PRK00293 dipZ thiol:disulfide 38.5 80 0.0017 33.8 6.6 21 51-71 61-81 (571)
69 PRK10019 nickel/cobalt efflux 37.8 1E+02 0.0023 30.5 6.8 23 324-346 87-109 (279)
70 KOG1397 Ca2+/H+ antiporter VCX 34.8 98 0.0021 32.6 6.2 42 144-185 134-180 (441)
71 COG2215 ABC-type uncharacteriz 33.4 1.2E+02 0.0027 30.5 6.5 69 278-346 75-152 (303)
72 TIGR00948 2a75 L-lysine export 31.7 1.8E+02 0.0039 25.6 6.7 61 285-345 13-76 (177)
73 COG4300 CadD Predicted permeas 30.1 1.9E+02 0.0041 27.6 6.7 55 290-345 33-87 (205)
74 TIGR00997 ispZ intracellular s 29.8 1.5E+02 0.0032 27.6 6.0 46 297-344 22-67 (178)
75 PF01595 DUF21: Domain of unkn 28.3 3.9E+02 0.0084 23.1 8.5 41 298-338 86-130 (183)
76 PF06072 Herpes_US9: Alphaherp 28.1 70 0.0015 25.1 3.0 32 158-189 24-57 (60)
77 PF03699 UPF0182: Uncharacteri 28.1 9.4E+02 0.02 27.4 14.8 51 296-346 160-222 (774)
78 TIGR03718 R_switched_Alx integ 27.7 1.4E+02 0.0031 29.9 5.9 57 157-221 214-270 (302)
79 COG2917 Intracellular septatio 27.3 1.6E+02 0.0035 27.7 5.8 46 297-344 22-67 (180)
80 PF02683 DsbD: Cytochrome C bi 26.6 2.2E+02 0.0047 25.9 6.5 44 298-343 49-92 (211)
81 PF05360 YiaAB: yiaA/B two hel 26.6 2.7E+02 0.0059 20.7 6.1 47 298-344 2-48 (53)
82 PRK10995 inner membrane protei 26.3 2E+02 0.0043 27.0 6.3 36 310-345 57-94 (221)
83 COG2814 AraJ Arabinose efflux 26.0 7.6E+02 0.016 25.6 12.5 37 152-188 66-102 (394)
84 KOG3415 Putative Rab5-interact 26.0 3.5E+02 0.0075 24.1 7.2 16 144-159 33-48 (129)
85 PF14007 YtpI: YtpI-like prote 25.9 1.8E+02 0.0038 24.3 5.2 24 323-346 54-77 (89)
86 COG2814 AraJ Arabinose efflux 23.7 8.4E+02 0.018 25.3 15.7 36 303-338 251-286 (394)
87 PF03239 FTR1: Iron permease F 22.9 4E+02 0.0087 26.2 8.0 34 163-196 165-198 (306)
88 PF02535 Zip: ZIP Zinc transpo 21.5 4.7E+02 0.01 24.6 8.0 51 292-343 228-285 (317)
89 PF04474 DUF554: Protein of un 21.3 7.5E+02 0.016 23.9 15.1 83 259-343 97-202 (226)
90 PF11295 DUF3096: Protein of u 20.7 2.9E+02 0.0062 20.1 4.7 34 310-345 3-36 (39)
91 PRK10520 rhtB homoserine/homos 20.7 2.8E+02 0.006 25.0 6.0 64 282-345 25-93 (205)
92 PLN02953 phosphatidate cytidyl 20.7 1.1E+02 0.0024 31.9 3.8 31 83-113 84-114 (403)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.2e-52 Score=390.96 Aligned_cols=238 Identities=44% Similarity=0.703 Sum_probs=188.5
Q ss_pred CCcccccccccCCCcccccCCCCCCChhhHHHHHhhhcccchhhhhhcCCchhHHHHHHHhhHHHHHHHHHhhhcCchhH
Q 019035 72 GSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTF 151 (347)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~sF~lIflAEiGDKTQ 151 (347)
.+++.+.+...+..++.+.+++..+.++... ++. ++|+.||++||++|+|||||
T Consensus 33 ~~V~~~~~~v~~l~~~~~a~~~~~d~~~~~~---------------------s~~-----~~f~~SiSmI~vsEiGDKTF 86 (294)
T KOG2881|consen 33 VDVKLSLIAVVTLITLAEAHKSNADISSTAS---------------------SFL-----QGFTASISMIFVSEIGDKTF 86 (294)
T ss_pred hhccCCccceeeccchhhcCccccccccchH---------------------HHH-----HHHHHhhheeeeeeccchHH
Confidence 3444555444555566666666655433322 222 48999999999999999999
Q ss_pred HHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCcccc
Q 019035 152 FIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVK 230 (347)
Q Consensus 152 lia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~ 230 (347)
|+|++|||||+|..||.|++.|+++||+||+++|+..+. +|..| |++++.++|++||+||+||+|.+++++.+
T Consensus 87 fiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~------T~~~~t~LF~iFGlkmL~eg~~~~~~~~~ 160 (294)
T KOG2881|consen 87 FIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKY------TYYLATALFLIFGLKMLKEGWEMSPSEGQ 160 (294)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH------HHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 999999999999999999999999999999999999876 56555 38999999999999999999999765431
Q ss_pred CCCCCcchhhhHHH----HHHHHH----------------HHhhccCCC-hhHHHHHHHHHHHHhhcCChhHHHHHHHhc
Q 019035 231 SGDKNGRELDELAE----AEELVK----------------EKLSKRLSN-PLEIIWKSFSLVFFAEWGDRSMLATIALGA 289 (347)
Q Consensus 231 ~gd~~~~e~~E~~E----aee~~~----------------~k~s~~~~~-~~~~fl~sF~liFLAE~GDKTQLaTiaLAa 289 (347)
+|.+|.++ .++..+ ++..++... ..++|+++|.++|++||||||||+|++||+
T Consensus 161 ------eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA 234 (294)
T KOG2881|consen 161 ------EELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAA 234 (294)
T ss_pred ------hhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 12121111 000000 000011111 125899999999999999999999999999
Q ss_pred ccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 290 AQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 290 ~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
+.+|+.|++|+++||.+||++||++|++++++|++|++.+++|++|++||+..+++.|
T Consensus 235 ~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~ 292 (294)
T KOG2881|consen 235 DENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGF 292 (294)
T ss_pred ccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998765
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3e-47 Score=344.56 Aligned_cols=183 Identities=36% Similarity=0.591 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHhhhcCchhHHHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHH
Q 019035 132 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLL 210 (347)
Q Consensus 132 ~~f~~sF~lIflAEiGDKTQlia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lF 210 (347)
++|+.|.++|+++|+|||||+++++||+||+|++||.|+..|++.||++++++|++... +|+++. +|..+.+|
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~------~~~~~~~F 75 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPL------AWASGVLF 75 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHH------HHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999998876 688886 68999999
Q ss_pred HHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcc
Q 019035 211 MFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAA 290 (347)
Q Consensus 211 l~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~ 290 (347)
+.||+|+++ +++++ ++ | .+ ..+++.+|.++|+++|++||||||||+|++||++
T Consensus 76 lafav~~l~-----edk~~---~~---e------~~----------~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~ 128 (190)
T COG2119 76 LAFAVWMLI-----EDKED---DE---E------AQ----------AASPRGVFVTTFITFFLAELGDKTQIATIALAAD 128 (190)
T ss_pred HHHHHHHhc-----ccccc---cc---c------cc----------ccccccHHHHHHHHHHHHHhccHHHHHHHHHhhc
Confidence 999996653 22211 11 0 00 0134668999999999999999999999999999
Q ss_pred cC-CceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 291 QS-PWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 291 ~~-p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
|+ ||.||+|+++||++|++++|++|+++++|+|+|+++.++|++|++||+..+|+.|
T Consensus 129 ~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~ 186 (190)
T COG2119 129 YHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186 (190)
T ss_pred CCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 6999999999999999999999999999999999999999999999999999864
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.90 E-value=2.5e-24 Score=171.16 Aligned_cols=76 Identities=47% Similarity=0.772 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHhccc--CCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 019035 264 IWKSFSLVFFAEWGDRSMLATIALGAAQ--SPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFA 339 (347)
Q Consensus 264 fl~sF~liFLAE~GDKTQLaTiaLAa~~--~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FG 339 (347)
|+++|.++|++|||||||++|++||++| +|+.|++|+++|++++|+++|++|+++.+++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999999999997
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.84 E-value=3.7e-21 Score=153.07 Aligned_cols=75 Identities=37% Similarity=0.644 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhcCchhHHHHHHHHccc--CchhHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhhcccchhHHHHHHHH
Q 019035 134 FTAAFSLIFVSEIGDKTFFIAALLAMQY--EKVLVLLGSMAALALMTVLSVVIGIIFH-SVPSQFQTTLPIGEYAAVTLL 210 (347)
Q Consensus 134 f~~sF~lIflAEiGDKTQlia~lLA~Ry--~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~-~lP~~~~~~l~~~~~~aa~lF 210 (347)
|+++|.++|++|+|||||++++.||+|| ++++|++|+.+|++++|++++++|+++. ++|++++ ++.++++|
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i------~~~~~~lF 74 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYI------KWVAGALF 74 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHH
Confidence 6789999999999999999999999999 4556999999999999999999999885 6999988 68999999
Q ss_pred HHHH
Q 019035 211 MFFG 214 (347)
Q Consensus 211 l~FG 214 (347)
++||
T Consensus 75 l~fG 78 (78)
T PF01169_consen 75 LLFG 78 (78)
T ss_pred HHHC
Confidence 9886
No 5
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=5.8e-18 Score=154.25 Aligned_cols=85 Identities=31% Similarity=0.449 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 019035 262 EIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVA 341 (347)
Q Consensus 262 ~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~ 341 (347)
+.+..+.++++++|+|||||+.++.||+||+|++|+.|+..|++.+|.+++++|++.+..+|+++.++.++++|++||+|
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~ 81 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVW 81 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 019035 342 TFFGV 346 (347)
Q Consensus 342 tL~~~ 346 (347)
++++.
T Consensus 82 ~l~ed 86 (190)
T COG2119 82 MLIED 86 (190)
T ss_pred Hhccc
Confidence 99863
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=1.7e-16 Score=151.29 Aligned_cols=88 Identities=27% Similarity=0.356 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 019035 259 NPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVF 338 (347)
Q Consensus 259 ~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~F 338 (347)
+....|..+++++|++|+||||.+.++.||+||+...||.|++.|++++|.+++++|+...+.+|.++.+++++++|++|
T Consensus 64 s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iF 143 (294)
T KOG2881|consen 64 SFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIF 143 (294)
T ss_pred HHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 019035 339 AVATFFGV 346 (347)
Q Consensus 339 Gv~tL~~~ 346 (347)
|+++++++
T Consensus 144 GlkmL~eg 151 (294)
T KOG2881|consen 144 GLKMLKEG 151 (294)
T ss_pred HHHHHHHh
Confidence 99999987
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.93 E-value=4.7e-05 Score=71.46 Aligned_cols=173 Identities=27% Similarity=0.352 Sum_probs=114.3
Q ss_pred HHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCC
Q 019035 153 IAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSG 232 (347)
Q Consensus 153 ia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~g 232 (347)
+++.-..-|+.+.-+.|+.+++++.-.++..+|..+..+|-+++ ++.++++++.||.+-+|.+-.-..+..+-+
T Consensus 23 Ia~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~lvPln~l------qiv~gvLLllFG~rw~Rsavrr~ag~rkg~ 96 (236)
T COG4280 23 IAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLYLVPLNYL------QIVSGVLLLLFGYRWIRSAVRRFAGIRKGG 96 (236)
T ss_pred HHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccceeeeechHH------HHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 33444445556668999999999999999999999998998887 788999999999988776532211111112
Q ss_pred CCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhccc-CCceeehHHHHHHHHHHHHH
Q 019035 233 DKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQ-SPWGVASGAIAGHLLATSFA 311 (347)
Q Consensus 233 d~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~-~p~~V~~Ga~lal~l~t~lA 311 (347)
+||. .||. .+.++++.. .+ +-.++.+|-.+.+ | |=.-.++.++|.+.+ .+..-..|+..|..+.-.++
T Consensus 97 ~ee~--leE~-----~~ldq~e~g-~~-~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~ 165 (236)
T COG4280 97 GEEK--LEEG-----IVLDQEEEG-FS-KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLT 165 (236)
T ss_pred chhh--Hhhh-----hhccccccc-ch-hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111 010111111 01 2234555544332 1 223345566676665 45677889999999999999
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Q 019035 312 VLGGAFLANYISEKLVGYIGGVLFLVFAVATF 343 (347)
Q Consensus 312 V~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL 343 (347)
.++-+.++ |+|+..+++.+|.+...||.+=+
T Consensus 166 ~~lh~pla-rvpe~~lKfvag~lL~sfGtfWl 196 (236)
T COG4280 166 AILHSPLA-RVPEPHLKFVAGALLFSFGTFWL 196 (236)
T ss_pred HHhccHHh-hCCchhHHHHHHHHHHHhhHHHh
Confidence 88888885 69999999999999999987644
No 8
>PRK11469 hypothetical protein; Provisional
Probab=97.89 E-value=0.00094 Score=61.27 Aligned_cols=137 Identities=16% Similarity=0.302 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhh
Q 019035 175 ALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLS 254 (347)
Q Consensus 175 ~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s 254 (347)
.+|+.++-.+|+.+....+.+ +||++..++++.|++|+||.|.-. ++ + ++ +.+
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~------~~~i~~~lL~~lG~~mi~e~~~~~--~~----~--~~-----~~~-------- 100 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEW------NHWIAFVLLIFLGGRMIIEGFRGA--DD----E--DE-----EPR-------- 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcc--cc----c--cc-----ccc--------
Confidence 677788888888776533333 378999999999999999987411 11 0 00 000
Q ss_pred ccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcc-cCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 019035 255 KRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAA-QSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGV 333 (347)
Q Consensus 255 ~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~-~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agv 333 (347)
++ .+.++.+..+..+-. ..--+-+.++.. .+++...+-.-+-.++++..++.+|+.+.+++ .++..+++|+
T Consensus 101 ~~-~~~~~~l~LaiAtSi------DAlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~lgG~ 172 (188)
T PRK11469 101 RR-HGFWLLVTTAIATSL------DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEILGGL 172 (188)
T ss_pred cC-CCHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 00 012222222211110 000011112221 23333333333445566777777888777654 4678999999
Q ss_pred HHHHHHHHHHHhc
Q 019035 334 LFLVFAVATFFGV 346 (347)
Q Consensus 334 lFl~FGv~tL~~~ 346 (347)
+.++.|++++++.
T Consensus 173 iLI~iGi~il~~h 185 (188)
T PRK11469 173 VLIGIGVQILWTH 185 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 9
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.65 E-value=0.0048 Score=54.64 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=93.9
Q ss_pred HHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCC
Q 019035 151 FFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGIIF-HSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPS 226 (347)
Q Consensus 151 Qlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l-~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~ 226 (347)
.+.++--+++++++. +.+|...+-.+...+++..-..+ ...|.-.. +-+++++..++++|.+++++....
T Consensus 11 ~~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~----~l~~~G~~~L~~lg~~~~~~~~~~-- 84 (191)
T PF01810_consen 11 NLLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFM----ILKLLGALYLLYLGYKLLRSKFSS-- 84 (191)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHhcccCc--
Confidence 455666777888654 67788888888877776665554 33443221 236788888899999887642211
Q ss_pred ccccCCCCCcchhhhHHHHHHHHHHHhhccCCChh-HHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHH
Q 019035 227 KEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPL-EIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHL 305 (347)
Q Consensus 227 ~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~-~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~ 305 (347)
+. ++ +++ .+..+......+..--...||. -.++.++...|+.+--+.+|.....+. +++|+...+.
T Consensus 85 -~~---~~-~~~-~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~w~~ 151 (191)
T PF01810_consen 85 -KS---ST-QSE-AKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILG-------IFLGSLLWFL 151 (191)
T ss_pred -ch---hh-hhh-hccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHH-------HHHHHHHHHH
Confidence 10 00 000 0000000000000000011232 246667777777764445555544432 3444444444
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 306 LATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 306 l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
+....+....+.+.++- .+++++++|++|+++|++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 152 LLALLGSRLRRKFSSRR-IRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444444444433221 23899999999999999999864
No 10
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=97.60 E-value=0.0031 Score=58.44 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035 173 ALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD 223 (347)
Q Consensus 173 Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~ 223 (347)
...+|+.++..+|+.+.. +|.++- +|+++++++++|++|+++.+.
T Consensus 39 ~~~~~~~lg~~~G~~~~~~i~~~~~------~~ig~~iLi~iG~~mi~~~~~ 84 (206)
T TIGR02840 39 ISGLFIFISMLLGKFLAKFLPPKVT------EILGAFILIAIGIWIIYNAFR 84 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhH------HHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999998764 776543 789999999999999999875
No 11
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.45 E-value=0.0042 Score=57.72 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 305 ~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
++.+.++...|+.+.+. =.++...++|++.+++|++.+++.+
T Consensus 147 ~il~~~G~~IG~~~g~~-~g~~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 147 LILSALGAIIGRKLGKF-LGKYAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555666666543 4578899999999999999999864
No 12
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.17 E-value=0.035 Score=50.80 Aligned_cols=164 Identities=16% Similarity=0.300 Sum_probs=100.3
Q ss_pred CchhHHHHHHHHc---ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035 147 GDKTFFIAALLAM---QYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD 223 (347)
Q Consensus 147 GDKTQlia~lLA~---Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~ 223 (347)
+|+=.+++++... +++++..+.|...|+++-.++-.....+++.. .++ +++.++.+++.+.|++++-.
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~--~~i------~~igG~~Ll~~a~k~~~~~~- 82 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIF--PWI------LLIGGLFLLYIAIKLLHEER- 82 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcc-
Confidence 5666666655443 34456689999999977766666665565543 222 46677777777777765321
Q ss_pred CCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChh-----HHHHHHHhcccCCceeeh
Q 019035 224 LPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRS-----MLATIALGAAQSPWGVAS 298 (347)
Q Consensus 224 L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKT-----QLaTiaLAa~~~p~~V~~ 298 (347)
+ +|+++ ++.++.+ +..+.....++.+...+ |+=|=. =++.++++ .+++.++.
T Consensus 83 -----~--~d~~~---~~~~~~~--------~~~~~~~~~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~ 139 (183)
T PF03741_consen 83 -----D--EDPEN---AEVEEEK--------KFFPVSKSSLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVIT 139 (183)
T ss_pred -----c--cccch---hhhhhhh--------ccccchhHHHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHH
Confidence 1 11100 1111101 00111122345554443 444543 34555554 78899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 299 GAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 299 Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
|.+++...+-..+-.+.+++.++ .++++.++.+-...|+.++.+
T Consensus 140 g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 140 GNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999998654 577888888888888887653
No 13
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=96.78 E-value=0.27 Score=45.36 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=89.0
Q ss_pred CchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHH-HhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhh
Q 019035 147 GDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVI-GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAW 222 (347)
Q Consensus 147 GDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~-G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w 222 (347)
..=..+.++.-+++++++. +.+|..++..+...+++.. +.++..-|.-.. +-+++.+.-++++|+++++...
T Consensus 20 PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~----~lk~~GaaYL~ylg~~~~ra~~ 95 (208)
T COG1280 20 PGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFT----VLKLAGAAYLLYLGWKALRAGG 95 (208)
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhccc
Confidence 4455566677778887654 6778888887776666553 445544443322 1257888888899998876532
Q ss_pred cCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCCh-hHHHHHHHHHHHHhhcCC--hhHHHHHHHhcccCCceeehH
Q 019035 223 DLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNP-LEIIWKSFSLVFFAEWGD--RSMLATIALGAAQSPWGVASG 299 (347)
Q Consensus 223 ~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~-~~~fl~sF~liFLAE~GD--KTQLaTiaLAa~~~p~~V~~G 299 (347)
...++ + +++..+........ +..--...|| .-.|+.++.--|+..-.+ ..|+..+.+... ++.
T Consensus 96 ~~~~~------~-~~~~~~~~~~~~f~-~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~------~~~ 161 (208)
T COG1280 96 AALAE------E-AAGAPSSSRRKAFR-RGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFI------LVG 161 (208)
T ss_pred ccccc------c-ccccccchhHHHHH-HHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH------HHH
Confidence 11111 0 00000000000000 0000011222 234555665555543332 344444333210 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 300 AIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 300 a~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
..-.......+...++++.+.--.|++++..|++|+.+|++++++.
T Consensus 162 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 162 -FVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred -HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0111111111223334443322378999999999999999998763
No 14
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=96.55 E-value=0.24 Score=43.78 Aligned_cols=65 Identities=17% Similarity=0.374 Sum_probs=41.7
Q ss_pred HHHHHHHcccCchh---HHHHHHHHHHHHHHHHHH-HHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035 152 FIAALLAMQYEKVL---VLLGSMAALALMTVLSVV-IGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD 220 (347)
Q Consensus 152 lia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~-~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~ 220 (347)
++++--+.+++++. +.+|..++..+...+++. ++.++...|.-.. +-++++++.++++|.+++++
T Consensus 7 ~~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~----~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 7 FVVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFT----VIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHc
Confidence 34455555665433 677889998888777766 4445655554322 22567777788899987653
No 15
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=96.27 E-value=0.058 Score=53.40 Aligned_cols=183 Identities=16% Similarity=0.260 Sum_probs=105.7
Q ss_pred HHHHHHhhhc---CchhHHHHHHHHc-----ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHH
Q 019035 137 AFSLIFVSEI---GDKTFFIAALLAM-----QYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVT 208 (347)
Q Consensus 137 sF~lIflAEi---GDKTQlia~lLA~-----Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~ 208 (347)
.|....+-|. +|+=+..+++++. +++++..+.|+..|+++=.++-...-.+++.+| |+ .++.++
T Consensus 64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~--wi------~~ifG~ 135 (302)
T TIGR03718 64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFH--WV------LYIFGA 135 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HH------HHHHHH
Confidence 4555555554 8999999998875 455566899999998766555444434554443 22 456666
Q ss_pred HHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHH-------hhccC----CC--hhHHHHHHHHHHHHhh
Q 019035 209 LLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEK-------LSKRL----SN--PLEIIWKSFSLVFFAE 275 (347)
Q Consensus 209 lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k-------~s~~~----~~--~~~~fl~sF~liFLAE 275 (347)
.+++-|.|++++ +++ |+ ++|.+ ..-...++. +..++ .+ ...+++ ..+..-|
T Consensus 136 fLi~~a~k~~~~------~~~---~~-~~~~~---~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~---~vli~Ie 199 (302)
T TIGR03718 136 FLLYTGIKMLFE------GDE---ED-DPENN---PLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLF---LVLVLVE 199 (302)
T ss_pred HHHHHHHHHHhh------ccc---cc-Ccccc---HHHHHHHhhcCCCccccCCceeeeecCceecCcHH---HHHHHHH
Confidence 666667766542 111 01 00000 000000000 00000 00 011233 3344456
Q ss_pred cCChhHH---HHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 276 WGDRSML---ATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 276 ~GDKTQL---aTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
.=|-.+= ...++|..++|+.|+.+.+.|.+..-.+.-++.+++.++ .++++.++++-...|+.++.+.
T Consensus 200 ~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 200 TTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence 6665442 233445567899999999988887777776777777543 5788888888889999988764
No 16
>PRK09304 arginine exporter protein; Provisional
Probab=96.12 E-value=1.1 Score=41.06 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=42.4
Q ss_pred hHHHHHHHHcccCchh-HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 150 TFFIAALLAMQYEKVL-VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 150 TQlia~lLA~Ry~~~~-Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
..+.++--+.++++.. ...|...+..+...+++..-. ++...|.-.. +-+++++.-++++|.+++|..
T Consensus 22 ~~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~----~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 22 QNAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLA----LVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 3444444556655433 677888888777766554443 5555565432 225777777888999888753
No 17
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.13 Score=49.67 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhhhc---CchhHHHHHHHH---cccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHH
Q 019035 133 GFTAAFSLIFVSEI---GDKTFFIAALLA---MQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAA 206 (347)
Q Consensus 133 ~f~~sF~lIflAEi---GDKTQlia~lLA---~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~a 206 (347)
....++...++-|. +|+=.+++++.. -+++++..+.|...|+++=.++-. .|.++-.++.... +..
T Consensus 15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~-~~s~Ll~l~~~l~-------~~f 86 (254)
T COG0861 15 AAWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLA-SISWLLTLTQPLL-------YIF 86 (254)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH-------HHH
Confidence 33456767777776 899888877532 344456689999999877665544 4444333332211 233
Q ss_pred HHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhh--cCChhHHHH
Q 019035 207 VTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAE--WGDRSMLAT 284 (347)
Q Consensus 207 a~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE--~GDKTQLaT 284 (347)
+..++.-+++++++.-.... ++..|.-|..|.++... + .++ ....+||.+...+-++- +.=-|=++.
T Consensus 87 g~~L~~~~~~ll~~~~~~~~-------k~~~~~~~~~~~~~~~~-~-~~~--~~~~~f~~ai~~I~i~D~vFSlDSV~Aa 155 (254)
T COG0861 87 GLYLLWRDIKLLLGGLFLLF-------KATKELHERLEGEEFFV-N-GKL--KKATPFWGAIIQIELADLVFSLDSVIAA 155 (254)
T ss_pred HHHHHHHHHHHHhcchhHHH-------HHHHHHhhhhccccccc-c-ccc--cccCcHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45555556665543111100 00001111111111000 0 000 01234566655554432 122344566
Q ss_pred HHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 285 IALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 285 iaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
++++ .+|+.|+.|.+.|...+-..+=.+.+++-++ .++.+.+..+-+..|+.++.++
T Consensus 156 ~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 156 VGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhh
Confidence 6555 6789999999999999999998888888654 4677777777788888887765
No 18
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=95.69 E-value=0.57 Score=44.33 Aligned_cols=158 Identities=18% Similarity=0.284 Sum_probs=95.1
Q ss_pred CchhHHHHHHHH---cccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035 147 GDKTFFIAALLA---MQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD 223 (347)
Q Consensus 147 GDKTQlia~lLA---~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~ 223 (347)
+|+-.+++++.. .+++++..+.|...|.++=-++-.....+++ +| ++ +++.++.+++.+.|++++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~--~l------~~iGG~~Ll~~~~k~l~~--- 76 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FW--WI------KAIGALYLLYLAIKHFRK--- 76 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HH------HHHHHHHHHHHHHHHHHh---
Confidence 455555555433 3345566899999999877666655555554 33 33 456666666667766642
Q ss_pred CCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhH-----HHHHHHhcccCCceeeh
Q 019035 224 LPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSM-----LATIALGAAQSPWGVAS 298 (347)
Q Consensus 224 L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQ-----LaTiaLAa~~~p~~V~~ 298 (347)
+++ +++ + ++ ++ + .++ -+.|+.+.. .-|.=|=.+ ++.+++ ..+++.++.
T Consensus 77 ---~~~--~~~-~---~~----~~---~--~~~----~~~f~~av~---~I~~~DlvFSlDSV~A~~gi--t~~~~ii~~ 129 (215)
T TIGR03716 77 ---KKK--GKE-D---EE----AE---K--KKA----HSGFWRTVL---KVELMDIAFSVDSILAAVAL--SGQFWVVFL 129 (215)
T ss_pred ---ccc--ccc-c---cc----cc---c--ccc----cchHHHHHH---HHHHHHHHHHhhhHHHHHHh--ccChHHHHH
Confidence 111 000 0 00 00 0 011 012444433 334444433 344443 478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 299 GAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 299 Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
|.+++...+-..+-.+.+++.++ .++++.++.+-...|+.++.++
T Consensus 130 g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 130 GGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888654 5677888888888898888753
No 19
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=95.65 E-value=0.06 Score=50.00 Aligned_cols=152 Identities=13% Similarity=0.178 Sum_probs=85.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhH
Q 019035 163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDEL 242 (347)
Q Consensus 163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~ 242 (347)
++.|++|=.+++.+.-+.|...+..+..+|++|+. -.-+.+=+++|+|.+ |.-+ + || +++
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiL------GlLGliPI~lGi~~l---~~~~---~---~~-e~~---- 84 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWIL------GLLGLIPIYLGIKAL---FSGE---D---DD-EEE---- 84 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHHHHHHH---HcCC---C---cc-ccc----
Confidence 45699999999999999999999888889998862 123445556787643 3211 1 11 000
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhc
Q 019035 243 AEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYI 322 (347)
Q Consensus 243 ~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~I 322 (347)
.++..+ .++.++ .+++. ..+.+|-=||+==+=+=.+|+.. +.-+.-..+-..++.++-+++++.+++.=
T Consensus 85 --~~~~~~---~~~~~~---~i~~V-a~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p 153 (191)
T PF03596_consen 85 --AEEKLN---SPKSNS---LILTV-AAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIP 153 (191)
T ss_pred --cccccc---cccccc---hhHHh-hhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 011000 111111 12322 22323335554222222222211 11222344455667777888888886532
Q ss_pred -----cHHHHHHHHHHHHHHHHHHHHHh
Q 019035 323 -----SEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 323 -----p~~~i~~~agvlFl~FGv~tL~~ 345 (347)
=+|+=+++.-++|+..|++.++|
T Consensus 154 ~i~~~leryg~~l~p~v~I~LGi~Il~e 181 (191)
T PF03596_consen 154 IIAEFLERYGRWLVPIVYIGLGIYILIE 181 (191)
T ss_pred HHHHHHHHhcccHHHHHHHHhCceeeEe
Confidence 26777899999999999998775
No 20
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=95.54 E-value=0.79 Score=41.83 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=94.6
Q ss_pred CchhHHHHHHHHcccC----chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhh
Q 019035 147 GDKTFFIAALLAMQYE----KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAW 222 (347)
Q Consensus 147 GDKTQlia~lLA~Ry~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w 222 (347)
+|+=.++++. +.+.+ ++..+.|...|+++..+.......+++ + .+. +++.++++++.|++|+++
T Consensus 14 ~DN~~vi~~~-t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~--~~~------~iaGGllLl~ia~~ml~~-- 81 (176)
T TIGR03717 14 GDNAVVIALA-ARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-I--PFL------KLIGGLLLLWIGWKLLLE-- 81 (176)
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--HHH------HHHHHHHHHHHHHHHHhc--
Confidence 6787777773 44433 344788999999888877766666665 3 222 577888888888888652
Q ss_pred cCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhH-----HHHHHHhcccCCceee
Q 019035 223 DLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSM-----LATIALGAAQSPWGVA 297 (347)
Q Consensus 223 ~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQ-----LaTiaLAa~~~p~~V~ 297 (347)
+.+ ++ + . + .++ ..+|+.+...+ |+=|=.+ ++.++ .++.+.+.++
T Consensus 82 ----~~~---~~---~-~-----~-------~~~----~~~~~~~v~~I---~~~D~~fS~DsV~a~~~-~~~~~~~li~ 130 (176)
T TIGR03717 82 ----EEE---EQ---G-G-----D-------VKG----STTLWAAIKTI---VIADAVMSLDNVLAVAG-AAHGHLGLLI 130 (176)
T ss_pred ----ccc---cc---c-c-----c-------ccc----cCcHHHHHHHH---HHHHHHHHHHHHHHHHH-HhcCCchHHH
Confidence 100 00 0 0 0 001 11234443333 3334333 22223 2345788899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 298 SGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 298 ~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
.|.+++..++-..+-.+.+++.++ .++++.++..-...|+.++++
T Consensus 131 ~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 131 FGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence 999999988888888888877554 577778887777888887653
No 21
>PRK10229 threonine efflux system; Provisional
Probab=95.41 E-value=2 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=47.1
Q ss_pred CchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035 147 GDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD 220 (347)
Q Consensus 147 GDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~ 220 (347)
..=..+.++--+.+|+++. ..+|...|..+...+++..-. ++...|.-.. +-++++++.++++|.+++|+
T Consensus 19 PGP~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~----~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 19 PGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHT----IIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred CCchhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3346777777888887654 467888888887776655544 4555554321 22577788888899988765
No 22
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.35 E-value=1.9 Score=39.03 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=47.5
Q ss_pred cCchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035 146 IGDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD 220 (347)
Q Consensus 146 iGDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~ 220 (347)
-..=..+.++--+++++++. ..+|...+..+...+++..-. ++...|.... +-+++++.-++++|.+++|.
T Consensus 19 sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~----~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 19 SPGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFE----VLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred CCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhC
Confidence 34555666777777777554 567999998888776654444 5555554432 22677888888899988764
No 23
>PRK10958 leucine export protein LeuE; Provisional
Probab=95.20 E-value=2.5 Score=38.88 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=43.8
Q ss_pred hhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHH-HHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 149 KTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVV-IGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 149 KTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~-~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
=..+..+--+.+++++. ..+|..++..+...+++. ++.++...|.-.. +-++++++-++++|.+++|+.
T Consensus 26 P~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~----~l~~~G~~yL~~la~~~~~~~ 98 (212)
T PRK10958 26 PNSLYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFN----VVKYLGAAYLLYLGVKMLRAA 98 (212)
T ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence 33444555666666543 577888888777666664 4445555554332 226777888888999888753
No 24
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=94.98 E-value=2.1 Score=41.96 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchh----hcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcch
Q 019035 163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQF----QTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRE 238 (347)
Q Consensus 163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~----~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e 238 (347)
+++|+.|+.+|+++.-++++++-.....++... ... +.-++|+++....+++|.+..-.+++ +
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg--~~~lvAv~~l~~m~~Wm~~~~~~~~~-----------~ 104 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEG--IFGVIAVVMLSYMGLWMLRMQRKWRV-----------K 104 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 568999999999988888887777655554322 211 11245666666667766543211110 1
Q ss_pred hhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHh
Q 019035 239 LDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFL 318 (347)
Q Consensus 239 ~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l 318 (347)
.+ . ..++..+++ .+.+..++.+|+.++ =| |=-|=+--.+++...+...+..|.++|+++..+++.++=+.-
T Consensus 105 i~---~---~~~~al~~~-~~~~al~~l~flaV~-RE-G~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~~g~li~~~~ 175 (283)
T TIGR00145 105 IE---R---QLVQALKRK-RSGWAIALIAFIAVV-RE-GLETVLFLAGFQQGSHATAYIGPAVAGLIVAVVVGVLLYRGG 175 (283)
T ss_pred HH---H---HHHHHHhcC-cchhHHHHHHHHHHH-Hh-hhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 111111111 134555666665443 00 111111111111112222233358888887777777765554
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 319 ANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 319 ~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
.|+|.+..-.+.+++-++++..++-
T Consensus 176 -~~i~l~~FF~~t~~lL~llAagl~~ 200 (283)
T TIGR00145 176 -SRLSLKIFFILSSSLLLFIAAGLLG 200 (283)
T ss_pred -hhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988888887777776654
No 25
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=94.20 E-value=4.2 Score=36.87 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=46.8
Q ss_pred cCchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHhh-hhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035 146 IGDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGII-FHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD 220 (347)
Q Consensus 146 iGDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~~-l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~ 220 (347)
...=+.++.+.-+++++++. ..+|...+..+...+++..... +...|.-.. +-+++++.-++++|.|++|.
T Consensus 19 sPGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~----vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 19 TPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVH----LLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 45556667777777777543 6889999999987666644433 344454332 22567777778889988763
No 26
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=94.16 E-value=0.09 Score=48.85 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=44.8
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 295 GVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 295 ~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
...+-..+-+.+++.++.++|+.+.+++|.++-+++++++++++|+++++++|
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556899999999999999999999999999999999999999864
No 27
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=94.07 E-value=0.85 Score=42.34 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHhcccCC---ceeehHHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 283 ATIALGAAQSP---WGVASGAIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 283 aTiaLAa~~~p---~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
+++.++++++. ..+.+++++...+.+.+.-..++++.+++. .+.+.++.|++-..+|+-+++++
T Consensus 129 ~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~G 198 (203)
T PF01914_consen 129 TVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSG 198 (203)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555442 345566666777777777778888887775 45778889999999999887764
No 28
>COG0730 Predicted permeases [General function prediction only]
Probab=93.84 E-value=5.7 Score=37.09 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 303 GHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 303 al~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
.+.+.+.++...|.++.+++|++.++.+-+.+.++.++.++++.
T Consensus 211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~ 254 (258)
T COG0730 211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999999999988764
No 29
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=93.65 E-value=6.2 Score=38.85 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=53.0
Q ss_pred HHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhc--cHHHHH---HHHHHHHHHHHHHH
Q 019035 268 FSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYI--SEKLVG---YIGGVLFLVFAVAT 342 (347)
Q Consensus 268 F~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~I--p~~~i~---~~agvlFl~FGv~t 342 (347)
+++.|..-+|+=+.=...+++. -+|.++.+.+...+++...+...++. ..++++ ++++++=+++|+++
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~ 269 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYM 269 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777766655555543 36888888888888877677666666 456667 99999999999999
Q ss_pred HHhc
Q 019035 343 FFGV 346 (347)
Q Consensus 343 L~~~ 346 (347)
.|+.
T Consensus 270 ~~~~ 273 (279)
T PRK10019 270 GVHG 273 (279)
T ss_pred HHHH
Confidence 8864
No 30
>COG4280 Predicted membrane protein [Function unknown]
Probab=93.18 E-value=0.27 Score=46.74 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhhcCChhHHHHHHHhcc--cCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 019035 261 LEIIWKSFSLVFFAEWGDRSMLATIALGAA--QSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVF 338 (347)
Q Consensus 261 ~~~fl~sF~liFLAE~GDKTQLaTiaLAa~--~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~F 338 (347)
++.|+.+|...++ | -+-..+++.+-. |++..-+.|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.|
T Consensus 3 wsi~lAAl~sSlv-E---lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllF 77 (236)
T COG4280 3 WSIFLAALGSSLV-E---LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLF 77 (236)
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHH
Confidence 3455555544332 2 345567777663 5778899999999999999999999999 5799999999999999999
Q ss_pred HHHHHH
Q 019035 339 AVATFF 344 (347)
Q Consensus 339 Gv~tL~ 344 (347)
|-.-..
T Consensus 78 G~rw~R 83 (236)
T COG4280 78 GYRWIR 83 (236)
T ss_pred HHHHHH
Confidence 965444
No 31
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=92.83 E-value=1.9 Score=42.23 Aligned_cols=169 Identities=22% Similarity=0.207 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCch-------hhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCC
Q 019035 163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQ-------FQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKN 235 (347)
Q Consensus 163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~-------~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~ 235 (347)
+++|+.|+.+|++....+++.+-.+...++.. .... .....+.++.....++|.+..-.+..+-+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~eg--~~~liA~~li~~m~~wm~~~~~~~~~~~~------ 106 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELFEG--AISLIAVALITWMVFWMRRHGRKMKGEWE------ 106 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhchhHH------
Confidence 47899999999999888888887766555541 1100 00123444444445555442111111100
Q ss_pred cchhhhHHH-HHHHHH--HHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccC--CceeehHHHHHHHHHHHH
Q 019035 236 GRELDELAE-AEELVK--EKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQS--PWGVASGAIAGHLLATSF 310 (347)
Q Consensus 236 ~~e~~E~~E-aee~~~--~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~--p~~V~~Ga~lal~l~t~l 310 (347)
++.+...+ .++..+ ++. .+..+.+..|+.+|+.+ +=| |=-|=+--.++.+..+ ...+..|+.+|.++..++
T Consensus 107 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~ 182 (306)
T PF03239_consen 107 -DKLAKALSSGSEDARASQKD-EGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVL 182 (306)
T ss_pred -HHHHHHHhhccchhhhhhhc-cccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 00000000 000000 011 11123455666666443 222 4445555555555433 577889999999999899
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 311 AVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 311 AV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
+.++-+.. .++|.+..-.+.+++-++.+..++.
T Consensus 183 ~~~~~~~~-~~i~~~~~f~~~~~~ll~~aa~L~~ 215 (306)
T PF03239_consen 183 GWLLYRGL-IRISLRSFFIITGVLLLLIAAGLLG 215 (306)
T ss_pred HHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 88887765 5689988888887766666655554
No 32
>PRK10995 inner membrane protein; Provisional
Probab=92.57 E-value=2.5 Score=39.54 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 310 FAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 310 lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
+....+..+.+++. .+.++++.|++...+|+.+++++
T Consensus 173 l~l~~a~~l~~~LG~~gl~ii~Ri~GliL~aiavq~i~~G 212 (221)
T PRK10995 173 GSLRSSGAIMRLLGKGGIEAISRLMGFLLVCMGVQFIING 212 (221)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333555556664 45778899999999999998765
No 33
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=89.70 E-value=16 Score=39.02 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCC-CccccCCCCCcchhhhHHH
Q 019035 167 LLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLP-SKEVKSGDKNGRELDELAE 244 (347)
Q Consensus 167 f~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~-~~~~~~gd~~~~e~~E~~E 244 (347)
.+|.++.+.+..+++..+|..++. +-..++ .+..+++|+++|+.|+ +.+.++ +..- .+ .
T Consensus 216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~------~~~~~~l~v~lgL~~~-G~~~l~lp~~~----------~~--~ 276 (571)
T PRK00293 216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYV------LIGLSILFVLLALSMF-GLFTLQLPSSL----------QT--R 276 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHh-cceeccCcHHH----------HH--H
Confidence 568888888888888888876542 211122 3466778888898775 333332 1000 00 0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChh---HHHHHHHhcc-cCCce---eehHHHHHHHHHH-HHHHHHHH
Q 019035 245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRS---MLATIALGAA-QSPWG---VASGAIAGHLLAT-SFAVLGGA 316 (347)
Q Consensus 245 aee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKT---QLaTiaLAa~-~~p~~---V~~Ga~lal~l~t-~lAV~~G~ 316 (347)
... ..++ .+..+..++|+..++..++ ++--+ -.+.+++++. .+++. ++..-.+|+.+-= +++...++
T Consensus 277 ~~~-~~~~--~~~~~~~gaf~~G~l~~l~--~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~ 351 (571)
T PRK00293 277 LTL-LSNR--QQGGSLGGVFVMGAISGLI--CSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNK 351 (571)
T ss_pred hhh-hhhc--ccCCchHhHHHHHHHHHHH--hCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0000 1112344566655544444 22333 2233444443 33321 2233333342222 22333333
Q ss_pred HhhhhccH---HHHHHHHHHHHHHHHHHHHHh
Q 019035 317 FLANYISE---KLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 317 ~l~~~Ip~---~~i~~~agvlFl~FGv~tL~~ 345 (347)
++. + +- +.++.+.|++.+++|+|+++.
T Consensus 352 ~lp-k-~g~wm~~~k~~~G~~ll~~~~~ll~~ 381 (571)
T PRK00293 352 LLP-K-SGPWMNQVKTAFGFVLLALPVFLLER 381 (571)
T ss_pred hcc-c-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2 22 357889999999999998874
No 34
>PRK10621 hypothetical protein; Provisional
Probab=89.44 E-value=19 Score=34.03 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 301 IAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 301 ~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
.+.+...+.++...|..+.+++|++.++.+...+-++.|+.++++.|
T Consensus 209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~ 255 (266)
T PRK10621 209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH 255 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 34466778899999999999999999999999999999999988764
No 35
>TIGR00948 2a75 L-lysine exporter.
Probab=89.23 E-value=15 Score=32.45 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=42.5
Q ss_pred HHHHHHcccCchh-HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 153 IAALLAMQYEKVL-VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 153 ia~lLA~Ry~~~~-Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
..+-.++++++-. ..+|...+..+...++++.-. ++...|.-.. .-++++++-++++|.+++|+.
T Consensus 11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~----~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLA----VLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555543 788999998888776665554 4455554432 225677777788999998764
No 36
>PRK11469 hypothetical protein; Provisional
Probab=88.67 E-value=0.92 Score=41.79 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 305 ~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
.+++.++-..|+.+.+++|+ +-|++++++.++.|+||++|++
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999998777 6699999999999999999874
No 37
>PRK11111 hypothetical protein; Provisional
Probab=88.64 E-value=5.5 Score=37.54 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 300 AIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 300 a~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
+.+...+.+.+....+.++.+++. .+.+.++.|++-..+|+-++.++
T Consensus 155 ai~~~~~~~~l~l~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~G 204 (214)
T PRK11111 155 AIALFALCCWLLFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTG 204 (214)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555666666664 56788899999999999887764
No 38
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=88.20 E-value=2.9 Score=39.41 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhhcc-----HHHHHHHHHHHHHHHHHHHHHh
Q 019035 305 LLATSFAVLGGAFLANYIS-----EKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 305 ~l~t~lAV~~G~~l~~~Ip-----~~~i~~~agvlFl~FGv~tL~~ 345 (347)
.++-.+=+..++.+++.=| +|+-|++-+++++..|++.+++
T Consensus 148 ~v~I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~LGlfIl~E 193 (205)
T COG4300 148 LVMIYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYE 193 (205)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhheeEEe
Confidence 3444555677888876433 6888999999999999998775
No 39
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=81.83 E-value=25 Score=32.73 Aligned_cols=48 Identities=25% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 299 GAIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 299 Ga~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
.+++...+.+.+.-..++++.+++. .+.+.++.|++-..+|+-+++++
T Consensus 150 ~ai~~~~~~~~~~l~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 150 LAIALVALITWLLFRYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444455556666666777777774 56778999999999999988775
No 40
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=80.75 E-value=25 Score=33.11 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=90.5
Q ss_pred hcCchhHHHHHHHHc--ccCchhHHHHHHHHHHHHHHHHHHHHh-hhhc--CCchhhcccchhHHHHHHHHHHHHHHHhh
Q 019035 145 EIGDKTFFIAALLAM--QYEKVLVLLGSMAALALMTVLSVVIGI-IFHS--VPSQFQTTLPIGEYAAVTLLMFFGLKSIK 219 (347)
Q Consensus 145 EiGDKTQlia~lLA~--Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~-~l~~--lP~~~~~~l~~~~~~aa~lFl~FGl~~l~ 219 (347)
=+|-=.+|+++.=-. +.+++.++-.+..|+.++-.. .++|. ++.. ++..-. +++++++.+..|++|+.
T Consensus 20 P~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~~ill~f-~~~G~~il~~fgIsi~a~------rIAGGilLf~ia~~ml~ 92 (203)
T COG2095 20 PIGNLPVFISLTKGLSPEERNRVALRASIIALLILLVF-LLLGEGILRFFGISIDAF------RIAGGILLFLIALRMLF 92 (203)
T ss_pred CCchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhHH------HHhhhHHHHHHHHHHhc
Confidence 344444555443211 112233566777777666554 45555 4442 554443 56788888888998875
Q ss_pred hhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccC-Cceeeh
Q 019035 220 DAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQS-PWGVAS 298 (347)
Q Consensus 220 ~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~-p~~V~~ 298 (347)
+- .+.. +++.|.++ |+ +. .--..--| -=-|.-|-=+++.++.+++ ...+.+
T Consensus 93 ~~----~~~~----~~~~e~~~--~~-~i----aivPLA~P-------------liaGPg~Ist~i~~~~~~~~~~~~~~ 144 (203)
T COG2095 93 GP----TSRP----KKKREEGQ--ED-SI----AIVPLAIP-------------LIAGPGTIATVIVLSSQYGNSKLAVV 144 (203)
T ss_pred CC----cCcC----CCCcccCc--cC-Ce----eeecccCc-------------cccCcHHHHHHHHHHhccCcccHHHH
Confidence 31 1111 10100000 00 00 00000001 0125555556667777654 345666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc---cHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 299 GAIAGHLLATSFAVLGGAFLANYI---SEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 299 Ga~lal~l~t~lAV~~G~~l~~~I---p~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
++++...+.+.+.-.....+.+++ ..+.+.++-|++-..+|+-+..++
T Consensus 145 ~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~G 195 (203)
T COG2095 145 LAILLASLLTYLILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDG 195 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777777777777766 466788899999999998887653
No 41
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=75.43 E-value=8.1 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 019035 302 AGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFA 339 (347)
Q Consensus 302 lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FG 339 (347)
+-..+++.++..+|+.+.+++ .++.+++++++++++|
T Consensus 31 ~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 31 IFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 345778889999999998855 5779999999998876
No 42
>COG1971 Predicted membrane protein [Function unknown]
Probab=72.00 E-value=8.6 Score=36.13 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035 304 HLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347 (347)
Q Consensus 304 l~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f 347 (347)
++++..++-+.|+++++ ....+=|++++++.++.|++|++++|
T Consensus 47 ~~i~pliG~~~g~~~s~-~i~~~~~wigf~lL~~lG~~mI~e~f 89 (190)
T COG1971 47 QAIMPLIGWFIGKFLST-FIAEWAHWIGFVLLIILGLKMIIEGF 89 (190)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666653 34678899999999999999999976
No 43
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=71.83 E-value=78 Score=28.65 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=18.4
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 019035 314 GGAFLANYISEKLVGYIGGVLFLVFAVA 341 (347)
Q Consensus 314 ~G~~l~~~Ip~~~i~~~agvlFl~FGv~ 341 (347)
.+.++.++...++.+ +++++++++|+|
T Consensus 173 ~~~~l~~~~~~~~~r-~~g~~~i~~G~~ 199 (199)
T PF13386_consen 173 LAGKLSRRLRRRLLR-LAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHC
Confidence 344455555555555 889999999975
No 44
>PRK10739 putative antibiotic transporter; Provisional
Probab=70.39 E-value=85 Score=29.28 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 301 IAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 301 ~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
.+...+.+.+.-..+..+.+++. .+.+.++.|++-..+|+-++.++
T Consensus 142 i~~~~~~~~l~l~~s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~G 190 (197)
T PRK10739 142 LLIAWGGTFVILLQSSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDG 190 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555666666664 56788899999999999887764
No 45
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=69.07 E-value=17 Score=33.01 Aligned_cols=45 Identities=22% Similarity=0.073 Sum_probs=38.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 019035 297 ASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVA 341 (347)
Q Consensus 297 ~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~ 341 (347)
.+...+.+...+.++..+|+++.+++|+++++.+..++.++.|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445556688889999999999999999999999999998888875
No 46
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=63.92 E-value=53 Score=35.40 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHH
Q 019035 203 EYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSML 282 (347)
Q Consensus 203 ~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQL 282 (347)
+++.++.++.||+++++|+...-- | +. .++.-.+..++|+..++..+.++-+--=-+-|-+
T Consensus 9 ~l~g~v~l~L~g~~~m~~Gv~~~~-----G-------------~~-lr~~L~~~t~np~~gvl~Gi~~T~llQSStatt~ 69 (533)
T COG1283 9 NLLGAVALLLFGIKMVGDGVQRAA-----G-------------DR-LRKILARFTSNPILGVLAGIVATALLQSSTATTV 69 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----H-------------HH-HHHHHHHhcCCcHHHHHHHHHHHHHHHhcchHHH
Confidence 667788888899999987643211 0 00 0111122235788889999999999888999999
Q ss_pred HHHHHhccc-----CCceeehHHHHHHHHHHHHH
Q 019035 283 ATIALGAAQ-----SPWGVASGAIAGHLLATSFA 311 (347)
Q Consensus 283 aTiaLAa~~-----~p~~V~~Ga~lal~l~t~lA 311 (347)
.|+.+.++. ...+|.+|+=+|..+.+-+-
T Consensus 70 lt~gfV~aGl~sl~~Ai~vilGANIGTt~Ta~iv 103 (533)
T COG1283 70 LTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIV 103 (533)
T ss_pred HHHHHHhccccchhhhhhheeccchhHHHHHHHH
Confidence 999999863 24678888888877665443
No 47
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=61.23 E-value=1.3e+02 Score=27.38 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHh
Q 019035 166 VLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSI 218 (347)
Q Consensus 166 Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l 218 (347)
...|..+.+.+.......+|+.++... .+. .++.+++++++|+.++
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~~~~-~~~------~~i~g~~~i~~Gl~~l 92 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFGQIS-PWL------YIIAGVLLILFGLSLL 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHH
Confidence 345888888888888888887765322 122 4577788888898665
No 48
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=58.68 E-value=95 Score=30.96 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHH
Q 019035 203 EYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSML 282 (347)
Q Consensus 203 ~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQL 282 (347)
+.+++..++++|++++++....-. + + .-++.. ++. ..+++..++..+.+..+--=---|-.
T Consensus 6 ~llgGlgl~l~Gl~~~~~~l~~~~-----g--------~--~~~~~l-~~~---t~~~~~a~l~G~~~Tal~QSSsa~t~ 66 (307)
T TIGR00704 6 HLLSAVAFLLWGMHIVRTGVMRVF-----G--------A--RLRTVL-SRS---TEKKPLAFLAGIGVTAIVQSSNATTV 66 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----h--------h--HHHHHH-HHH---cCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888999999887642110 0 0 001111 111 13456556655555555444444445
Q ss_pred HHHHHhccc-----CCceeehHHHHHHHHHHHHHHH-----------HH--HHhhhhc-cHHHHHHHHHHHHHHHHHHHH
Q 019035 283 ATIALGAAQ-----SPWGVASGAIAGHLLATSFAVL-----------GG--AFLANYI-SEKLVGYIGGVLFLVFAVATF 343 (347)
Q Consensus 283 aTiaLAa~~-----~p~~V~~Ga~lal~l~t~lAV~-----------~G--~~l~~~I-p~~~i~~~agvlFl~FGv~tL 343 (347)
.++.|+... .-..|.+|+-+|-.+...+..+ .| .++.++- ..++-+.+.|.-++++|+..+
T Consensus 67 i~i~lv~~G~l~~~~al~iilGANiGTt~t~~l~s~~~~~~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m 146 (307)
T TIGR00704 67 LVISFVAAGVLSLAPAIVIILGANVGTTLTARILAFDLSILSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELI 146 (307)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666542 2345666766666555544432 12 1222111 123334556666666776655
Q ss_pred Hh
Q 019035 344 FG 345 (347)
Q Consensus 344 ~~ 345 (347)
-+
T Consensus 147 ~~ 148 (307)
T TIGR00704 147 SQ 148 (307)
T ss_pred HH
Confidence 43
No 49
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=57.88 E-value=1.1e+02 Score=28.78 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhcCchhHHHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 019035 135 TAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIF 188 (347)
Q Consensus 135 ~~sF~lIflAEiGDKTQlia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l 188 (347)
+..+..|.+=++-+-==+...+..+..++++.+. ....+.+++-+++++|.++
T Consensus 201 ~~~~~ai~~Hk~~e~~~~~~~l~~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~ 253 (317)
T PF02535_consen 201 WSLFIAIILHKIPEGFALGSILVKAGFSKRKALL-LLLLFSLSTPIGALIGIAI 253 (317)
T ss_pred HHHHHHHHHhHhHHHhhhhhhhhhhccccchhhH-HHHHHHHHHHHHHHHHHHh
Confidence 4445555554444332233334445555666555 7788899999999999988
No 50
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=57.48 E-value=34 Score=31.43 Aligned_cols=51 Identities=27% Similarity=0.501 Sum_probs=41.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhh
Q 019035 161 YEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIK 219 (347)
Q Consensus 161 y~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~ 219 (347)
.+...++.|.+.+...|-..+-.+.+++.+.|.- ++.++.+..+.|++|+.
T Consensus 132 ~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~p~l--------~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 132 DDFFIVITGNIISILLMRFLSFLLAKLLERFPYL--------KYLAAAILGFIGVKLIL 182 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Confidence 3445589999999999999999999999877632 56788888888998864
No 51
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=55.97 E-value=67 Score=34.17 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhc-CChhHHHHHHHhcccCCceeehHHH----HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Q 019035 263 IIWKSFSLVFFAEW-GDRSMLATIALGAAQSPWGVASGAI----AGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLV 337 (347)
Q Consensus 263 ~fl~sF~liFLAE~-GDKTQLaTiaLAa~~~p~~V~~Ga~----lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~ 337 (347)
-+++.|...|.++- ++-+|..++.+-.-.+--.|+-++. .|.+.+...-.+..-.+.+..+.+.+.+...+.|..
T Consensus 267 c~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~ 346 (488)
T KOG2325|consen 267 CIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLS 346 (488)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHh
Confidence 45567777777777 9999999988866432233444333 333333333333333443334555555555566655
Q ss_pred HHHH
Q 019035 338 FAVA 341 (347)
Q Consensus 338 FGv~ 341 (347)
+-+.
T Consensus 347 ~~i~ 350 (488)
T KOG2325|consen 347 YYIF 350 (488)
T ss_pred hhee
Confidence 5433
No 52
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=55.73 E-value=39 Score=31.83 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=45.3
Q ss_pred ccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 290 AQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 290 ~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
+++++.+.+|-.+|..+--..++.++..+ ..+|++|+--.-|++=+.+|++-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhc
Confidence 56889999999999988877777765554 68999999777888888999987663
No 53
>COG0730 Predicted permeases [General function prediction only]
Probab=54.72 E-value=54 Score=30.57 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=44.7
Q ss_pred CceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 293 PWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 293 p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
...+-.-...-+.....++..+|.++..++|.++.+..-+++.++.+++++++
T Consensus 68 ~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~ 120 (258)
T COG0730 68 RGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLG 120 (258)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466666777777778999999999999999999999999999999998875
No 54
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=54.11 E-value=38 Score=29.82 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=45.3
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 292 SPWGVASGAIAGHLLATSFAVLGGAFLANYIS--EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 292 ~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip--~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
+-..+.+|..++-.+...+++++-..+.+..| ..++++++++.++.+|..++.+.
T Consensus 25 ~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~ 81 (191)
T PF01810_consen 25 AGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSK 81 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678899999999999999988888766444 56889999999999999988754
No 55
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=51.93 E-value=20 Score=33.68 Aligned_cols=52 Identities=12% Similarity=0.267 Sum_probs=35.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHH
Q 019035 160 QYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKS 217 (347)
Q Consensus 160 Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~ 217 (347)
|++++.|.+|=.+++.+.-+.|...+..+..+|++|+. -.-+.+=+++|+|.
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP~~wIl------GlLGliPI~lGi~~ 72 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIPEKWVL------GLLGLIPIYLGIKV 72 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCCHHHHH------hHHhHHHHHHHHHH
Confidence 56677799999999988888888766555578998761 12233335667743
No 56
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=49.69 E-value=90 Score=29.20 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=46.2
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 292 SPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 292 ~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
+++.|++|-.+|..+.-..+..++..+. .+|+.|+--+-|++=+.+|++.+++
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999998888888888764 8999999888899999999997764
No 57
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=49.29 E-value=69 Score=30.46 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=43.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 161 YEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 161 y~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
.+...++.|...+...|-..+-.+.+++.+.|.- ++.+.....+.|++|+.+.
T Consensus 122 ~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~p~L--------~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 122 GQFWVVFLGGIIGILIMRFAATIFVKLLERFPEL--------ETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 3455689999999999999999999988776532 5677888888899998765
No 58
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=48.85 E-value=74 Score=24.00 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHH
Q 019035 174 LALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFG 214 (347)
Q Consensus 174 l~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FG 214 (347)
..+|+.++..+|+.+.+...++ .+|++++++.++|
T Consensus 33 ~~~~~~~G~~~G~~~~~~~~~~------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRRLGRFIGSY------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC
Confidence 3677788888888775543343 3678888777654
No 59
>PRK10621 hypothetical protein; Provisional
Probab=48.83 E-value=54 Score=31.03 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 296 VASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 296 V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
|=.-...-+.+...+++..|.++.+++|+++++.+-+++.++.++++++
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~ 123 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLL 123 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667778888999999999999999999888888888887764
No 60
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=48.44 E-value=77 Score=30.87 Aligned_cols=53 Identities=19% Similarity=0.422 Sum_probs=43.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 161 YEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 161 y~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
-+...++.|.+.|..+|-..+-.+.+++.+.|.- .+++.+..++.|++|+.+.
T Consensus 160 ~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l--------~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 160 GHPFVMVTAVIFAILVMRFAAFLLARLLERHPTL--------KYLALVILLFIGVKLILEG 212 (254)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHH--------HHHHHHHHHHHHHHHHHhh
Confidence 3455689999999999999999999999877642 4677888888899998654
No 61
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=45.52 E-value=42 Score=30.39 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 302 AGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 302 lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
.-+.+...+++..|.++..++|+++++..-++.-++++++++++
T Consensus 67 ~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~ 110 (240)
T PF01925_consen 67 LPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK 110 (240)
T ss_pred hhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666777788888888888888888888888888887653
No 62
>PRK00259 intracellular septation protein A; Reviewed
Probab=45.20 E-value=63 Score=29.83 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=37.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 297 ASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 297 ~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
+.-++.+.++++.+++....+..+++|.. ++++.++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHH
Confidence 55677788889999999999998877654 88888888899988886
No 63
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=44.11 E-value=4e+02 Score=27.83 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.4
Q ss_pred HHhhHHHHHHHHHhhhcCc
Q 019035 130 AKSGFTAAFSLIFVSEIGD 148 (347)
Q Consensus 130 ~~~~f~~sF~lIflAEiGD 148 (347)
+-+.++.++.+.++.=+.|
T Consensus 77 sis~l~~all~P~lGa~aD 95 (477)
T PF11700_consen 77 SISGLLQALLAPFLGAIAD 95 (477)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3478899999999999999
No 64
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=41.83 E-value=81 Score=27.73 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHHH
Q 019035 292 SPWGVASGAIAGHLLATSFAVLGGAFLANYISE--KLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 292 ~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~--~~i~~~agvlFl~FGv~tL~ 344 (347)
+-+.+.+|..+|..+...+++++-..+.+..|. ..+++++++..+.+|..++.
T Consensus 20 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 20 AGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988888876666666674 67788877777889987765
No 65
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=41.55 E-value=1.1e+02 Score=28.07 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhh
Q 019035 163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIK 219 (347)
Q Consensus 163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~ 219 (347)
-..++.|...+..+|-..|-.+.+++.+.|.- ++.+.....+.|+||+.
T Consensus 126 ~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l--------~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 126 LGLLIFGLLLSIPIIVWGSTLILKLMDRFPWI--------IYIGAALLGYVAGEMIV 174 (176)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhc
Confidence 34489999999999999999999888776532 56778888888999874
No 66
>PRK10229 threonine efflux system; Provisional
Probab=41.01 E-value=2e+02 Score=25.90 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=47.2
Q ss_pred hHHHHHHHhccc---CCceeehHHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHHHh
Q 019035 280 SMLATIALGAAQ---SPWGVASGAIAGHLLATSFAVLGGAFLANYISE--KLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 280 TQLaTiaLAa~~---~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~--~~i~~~agvlFl~FGv~tL~~ 345 (347)
..+.++.-+.++ +-....+|...|..+...+++++-..+.+..|. ..+++++++-.+.+|..++.+
T Consensus 22 ~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 22 DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666665 345678899999999888888887777777773 466776666666788777664
No 67
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=40.03 E-value=3.2e+02 Score=27.32 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhH
Q 019035 202 GEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSM 281 (347)
Q Consensus 202 ~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQ 281 (347)
++.+.+..++|+|+.+++++-.--.+ ++...+ .. ++.. .+++-.++..+.++.+.-==--+=
T Consensus 130 G~~l~G~gllf~gl~~m~~~~~pl~~--------~~~~~~------~~-~~l~---~~~~~~~l~G~~lT~ivQSSsA~i 191 (307)
T TIGR00704 130 GRSGIGLGLIFLALELISQLVTPLTQ--------ANGVQV------IF-ASLT---GSILLDLLIGAVLTIISHSSSAAV 191 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--------ChhHHH------HH-HHhc---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999888765321100 001111 00 0111 244544555544444432111122
Q ss_pred HHHHHHhccc-----CCceeehHHHHHHHHHHHHHHHHHHHhhhhccHH--HHHHHHHHHHHHH
Q 019035 282 LATIALGAAQ-----SPWGVASGAIAGHLLATSFAVLGGAFLANYISEK--LVGYIGGVLFLVF 338 (347)
Q Consensus 282 LaTiaLAa~~-----~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~--~i~~~agvlFl~F 338 (347)
..++.|+... ...++.+|+-+|-.+...++...+..-++|+..- ..+.++.++|+.|
T Consensus 192 ~i~~~la~~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr~Alahllfn~~g~ll~lp~ 255 (307)
T TIGR00704 192 LITATLTAAGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARRVALGHVLFNVVGSLIILPF 255 (307)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444442 2356788888888888888888877777776443 3466666666554
No 68
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=38.51 E-value=80 Score=33.77 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=11.1
Q ss_pred ccccceeeeeccccccCCCCC
Q 019035 51 LSHGKFIVQASNIGVGSGGHE 71 (347)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~ 71 (347)
.-|+++.+..++..+|.=.+.
T Consensus 61 LY~~~i~~~~~~~~l~~~~~P 81 (571)
T PRK00293 61 LYRKQIKITPEPADLGEPQLP 81 (571)
T ss_pred EEeeeEEEEeCCcccCCcCCC
Confidence 344566666566655543443
No 69
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=37.79 E-value=1e+02 Score=30.45 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 324 EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 324 ~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
..++..+++++-+++|+|++|..
T Consensus 87 ~~~le~~S~~lii~lGl~ll~r~ 109 (279)
T PRK10019 87 EPWLQLISAVIIISTAFWMFWRT 109 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999864
No 70
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=34.84 E-value=98 Score=32.55 Aligned_cols=42 Identities=36% Similarity=0.500 Sum_probs=24.8
Q ss_pred hhcCchhHHHHHHHHcccCchhH----HHHHHH-HHHHHHHHHHHHH
Q 019035 144 SEIGDKTFFIAALLAMQYEKVLV----LLGSMA-ALALMTVLSVVIG 185 (347)
Q Consensus 144 AEiGDKTQlia~lLA~Ry~~~~V----f~Ga~~-Al~l~t~LaV~~G 185 (347)
|-.|.-|-++..++|-|.++-.| .+|+++ .++++-+++-..|
T Consensus 134 AtfGnaiElii~ilALk~g~~riVq~SlLGSILsnlLLvlG~s~~~G 180 (441)
T KOG1397|consen 134 ATFGNAIELIIYILALKNGKVRIVQGSLLGSILSNLLLVLGLSLFCG 180 (441)
T ss_pred hhhccHHHHHHHHHHhhcCceEEEehhhHHHHHHHHHHHhhHHHhhc
Confidence 45688888888999988876432 444433 3344444443333
No 71
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.44 E-value=1.2e+02 Score=30.54 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=45.9
Q ss_pred ChhHHHHHHHhcccC-CceeehHHHHHH--------HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 278 DRSMLATIALGAAQS-PWGVASGAIAGH--------LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 278 DKTQLaTiaLAa~~~-p~~V~~Ga~lal--------~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
-|+-++|-..+.+-+ +..+.++..+++ ++.-...|+-+..+.-..++.+++.++.++-+.+|+|++|..
T Consensus 75 gKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~~r~ 152 (303)
T COG2215 75 GKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLLWRT 152 (303)
T ss_pred chHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777766665533 334555444332 222334445556666677899999999999999999999864
No 72
>TIGR00948 2a75 L-lysine exporter.
Probab=31.67 E-value=1.8e+02 Score=25.61 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=42.3
Q ss_pred HHHhccc-CCceeehHHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHHHh
Q 019035 285 IALGAAQ-SPWGVASGAIAGHLLATSFAVLGGAFLANYISE--KLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 285 iaLAa~~-~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~--~~i~~~agvlFl~FGv~tL~~ 345 (347)
+.-++++ +-+...+|..+|..+...+++++-..+.+..|. ..+++++++-.+.+|..++.+
T Consensus 13 i~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 13 LRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433 345678899999998888888887777665553 466777777667788877764
No 73
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=30.08 E-value=1.9e+02 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=43.7
Q ss_pred ccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 290 AQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 290 ~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
+.+.+.+++|=.+|.+..-+.+.. +.+..+++|++++--.-|++=+..|++.++.
T Consensus 33 ~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~ 87 (205)
T COG4300 33 RKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLIL 87 (205)
T ss_pred cCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhc
Confidence 446788999999988766555544 4446688999999999999999999998774
No 74
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=29.77 E-value=1.5e+02 Score=27.56 Aligned_cols=46 Identities=24% Similarity=0.169 Sum_probs=36.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 297 ASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 297 ~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
+.=++.++++++++++....+..++++ .++++++++=++||..|++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~--~m~~is~~lv~vFGglTl~ 67 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVE--KMQWISFVLIVVFGGLTLI 67 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHHHHHH
Confidence 344567778888899988888887664 5678888888899988876
No 75
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=28.33 E-value=3.9e+02 Score=23.06 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhc----cHHHHHHHHHHHHHHH
Q 019035 298 SGAIAGHLLATSFAVLGGAFLANYI----SEKLVGYIGGVLFLVF 338 (347)
Q Consensus 298 ~Ga~lal~l~t~lAV~~G~~l~~~I----p~~~i~~~agvlFl~F 338 (347)
.+..++.++++.+.+++|..+++.+ |+++....+..+-++.
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~ 130 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLM 130 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777777888888888887766655 7777777776655443
No 76
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=28.13 E-value=70 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred HcccCchh--HHHHHHHHHHHHHHHHHHHHhhhh
Q 019035 158 AMQYEKVL--VLLGSMAALALMTVLSVVIGIIFH 189 (347)
Q Consensus 158 A~Ry~~~~--Vf~Ga~~Al~l~t~LaV~~G~~l~ 189 (347)
+.|++|+. +-++...+.+++.++|..+|.++.
T Consensus 24 ~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 24 ASRRRRRRCRLAVAIVFAVVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555443 567778888899999999998764
No 77
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.06 E-value=9.4e+02 Score=27.38 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhhhhcc------------HHHHHHHHHHHHHHHHHHHHHhc
Q 019035 296 VASGAIAGHLLATSFAVLGGAFLANYIS------------EKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 296 V~~Ga~lal~l~t~lAV~~G~~l~~~Ip------------~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
.+.+..++.++.+++++++-+++...+. .+.+..++|++|++.|+...++-
T Consensus 160 ~l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~~~l~~a~~y~L~r 222 (774)
T PF03699_consen 160 FLQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLALFFLLKAVGYWLDR 222 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888777777654442 45778889999999888766553
No 78
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=27.70 E-value=1.4e+02 Score=29.94 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035 157 LAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221 (347)
Q Consensus 157 LA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~ 221 (347)
.|.-.++..|+.+-+.|.+.+-.+--++..++.+.|- -++.++....+.|+||+.+.
T Consensus 214 ~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~--------L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 214 FAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHY--------LKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 3334466778888888888777777777777766542 25788888889999998654
No 79
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=27.32 E-value=1.6e+02 Score=27.66 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=37.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 297 ASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 297 ~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
+-.++..++++|++++....+.-+++ ..++++++++-++||..|++
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv--~km~l~s~~~v~vFG~lTl~ 67 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKV--EKMQLISGVVVVVFGGLTLI 67 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhchhHhh
Confidence 44566677888999999998887765 45788899999999999886
No 80
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=26.58 E-value=2.2e+02 Score=25.95 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Q 019035 298 SGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATF 343 (347)
Q Consensus 298 ~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL 343 (347)
.|..+.+.+.......+|+.+.+ -.+++..+.|++++++|+.++
T Consensus 49 ~G~~~~~~~lG~~~~~~g~~~~~--~~~~~~~i~g~~~i~~Gl~~l 92 (211)
T PF02683_consen 49 LGFALVFALLGLGAGALGSFFGQ--ISPWLYIIAGVLLILFGLSLL 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666666653 245778888888888888765
No 81
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=26.55 E-value=2.7e+02 Score=20.71 Aligned_cols=47 Identities=23% Similarity=0.157 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035 298 SGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344 (347)
Q Consensus 298 ~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~ 344 (347)
.+.....+........+|-+-+..-+-..--+..+.+|.+++..++-
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~tl~ 48 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFTLQ 48 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556667777778888888766555555678889999999988764
No 82
>PRK10995 inner membrane protein; Provisional
Probab=26.33 E-value=2e+02 Score=26.98 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhc--cHHHHHHHHHHHHHHHHHHHHHh
Q 019035 310 FAVLGGAFLANYI--SEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 310 lAV~~G~~l~~~I--p~~~i~~~agvlFl~FGv~tL~~ 345 (347)
+..++|+.+.+.+ +....++.+|++.+.+|+.|+++
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~ 94 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFP 94 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666665654 78899999999999999999864
No 83
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=25.97 E-value=7.6e+02 Score=25.64 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 019035 152 FIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIF 188 (347)
Q Consensus 152 lia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l 188 (347)
.....+..|++||.++++.+.-+++-|+++++...+.
T Consensus 66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~ 102 (394)
T COG2814 66 PLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA 102 (394)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4556788999999999999999999999999887653
No 84
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=3.5e+02 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.0
Q ss_pred hhcCchhHHHHHHHHc
Q 019035 144 SEIGDKTFFIAALLAM 159 (347)
Q Consensus 144 AEiGDKTQlia~lLA~ 159 (347)
||+.||-||.-.+.=.
T Consensus 33 a~W~DKdellDViyW~ 48 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWI 48 (129)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 7999999998876533
No 85
>PF14007 YtpI: YtpI-like protein
Probab=25.88 E-value=1.8e+02 Score=24.30 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Q 019035 323 SEKLVGYIGGVLFLVFAVATFFGV 346 (347)
Q Consensus 323 p~~~i~~~agvlFl~FGv~tL~~~ 346 (347)
...+++++-|++|+++|+..++.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G 77 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAG 77 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHH
Confidence 678889999999999999888754
No 86
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=23.68 E-value=8.4e+02 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 019035 303 GHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVF 338 (347)
Q Consensus 303 al~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~F 338 (347)
...+.-+++.++|.++..|+..|..+......++++
T Consensus 251 ~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l~ 286 (394)
T COG2814 251 LVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLL 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence 344455566666666666665554444444333333
No 87
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=22.94 E-value=4e+02 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh
Q 019035 163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQ 196 (347)
Q Consensus 163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~ 196 (347)
...+..|+..+.++..+++.++-+...++|.+..
T Consensus 165 ~~~~~~g~~~G~~~a~~~~~~~~~~~~~i~~~~~ 198 (306)
T PF03239_consen 165 AASILLGAILGIAAAVVLGWLLYRGLIRISLRSF 198 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 4668888888888877788777766666776543
No 88
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.49 E-value=4.7e+02 Score=24.60 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=34.2
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHh-------hhhccHHHHHHHHHHHHHHHHHHHH
Q 019035 292 SPWGVASGAIAGHLLATSFAVLGGAFL-------ANYISEKLVGYIGGVLFLVFAVATF 343 (347)
Q Consensus 292 ~p~~V~~Ga~lal~l~t~lAV~~G~~l-------~~~Ip~~~i~~~agvlFl~FGv~tL 343 (347)
+.+..++ ..+...+++-+++++|.++ ....-..++.-+++..|+..++..+
T Consensus 228 ~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~el 285 (317)
T PF02535_consen 228 SKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVEL 285 (317)
T ss_pred ccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343444 7777888888999999888 2333445666677777777776643
No 89
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=21.30 E-value=7.5e+02 Score=23.88 Aligned_cols=83 Identities=28% Similarity=0.358 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHHHhh-----------cCChhHH---------HHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHh
Q 019035 259 NPLEIIWKSFSLVFFAE-----------WGDRSML---------ATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFL 318 (347)
Q Consensus 259 ~~~~~fl~sF~liFLAE-----------~GDKTQL---------aTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l 318 (347)
+..+.|.++.+++=+.- -||-|.+ +++.||+.+.+ .|..-+.-=++.-..+. ++++++
T Consensus 97 ~f~~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG~-gV~~saipv~iyQg~l~-llA~~l 174 (226)
T PF04474_consen 97 SFAEGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLGI-GVAFSAIPVFIYQGSLT-LLAGFL 174 (226)
T ss_pred cHHHHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34566666655443333 3898876 45788888763 34444333333333333 566677
Q ss_pred hhhccHHHH---HHHHHHHHHHHHHHHH
Q 019035 319 ANYISEKLV---GYIGGVLFLVFAVATF 343 (347)
Q Consensus 319 ~~~Ip~~~i---~~~agvlFl~FGv~tL 343 (347)
...+++..+ ..++|++-+..|+-++
T Consensus 175 ~~~ls~~~i~~~savGGili~~iGlnll 202 (226)
T PF04474_consen 175 APLLSPAMINEISAVGGILILAIGLNLL 202 (226)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777877765 5677788888887655
No 90
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=20.74 E-value=2.9e+02 Score=20.05 Aligned_cols=34 Identities=26% Similarity=0.667 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035 310 FAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 310 lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~ 345 (347)
+|.+.|-.+ .+-+|+++++.|+-.++.|+.-+..
T Consensus 3 ~aliaGiLi--Li~PrllnyiVaiyLI~~G~lgL~~ 36 (39)
T PF11295_consen 3 LALIAGILI--LIMPRLLNYIVAIYLIVIGLLGLFG 36 (39)
T ss_pred HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466667666 4578999999999999999987653
No 91
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=20.69 E-value=2.8e+02 Score=25.03 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=43.5
Q ss_pred HHHHHHhccc---CCceeehHHHHHHHHHHHHHHHHHHHhhhhccH--HHHHHHHHHHHHHHHHHHHHh
Q 019035 282 LATIALGAAQ---SPWGVASGAIAGHLLATSFAVLGGAFLANYISE--KLVGYIGGVLFLVFAVATFFG 345 (347)
Q Consensus 282 LaTiaLAa~~---~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~--~~i~~~agvlFl~FGv~tL~~ 345 (347)
+.++.-+.++ +-+...+|..+|..+...+++++-..+.+..|. ..++++++.-.+.+|+.++..
T Consensus 25 ~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 25 INTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444443 345677899999999988888777666565554 356777777667788887753
No 92
>PLN02953 phosphatidate cytidylyltransferase
Probab=20.68 E-value=1.1e+02 Score=31.92 Aligned_cols=31 Identities=6% Similarity=-0.265 Sum_probs=21.9
Q ss_pred CCCcccccCCCCCCChhhHHHHHhhhcccch
Q 019035 83 GNSSEIQKAPSRILYPVSIALVLLGCGLVFS 113 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (347)
|.++.++|++++.+.++-+...+...+++..
T Consensus 84 ~~~~~~~~~~~~~~l~~RIiSglvl~~l~l~ 114 (403)
T PLN02953 84 DLQNVEDKQKKASQLKKRVIFGIGIGLPVGC 114 (403)
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHh
Confidence 4556677999998888888777655555444
Done!