Query 019035
Match_columns 347
No_of_seqs 231 out of 1229
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 31.1 2.9E+02 0.0099 24.7 12.3 37 305-341 298-336 (451)
2 2lx0_A Membrane fusion protein 10.6 2.9E+02 0.01 17.9 3.4 16 328-343 11-26 (32)
3 4gc0_A D-xylose-proton symport 9.1 5.5E+02 0.019 23.4 6.2 33 310-342 70-102 (491)
4 4hkr_A Calcium release-activat 8.9 6.6E+02 0.023 23.0 6.4 51 131-188 32-84 (214)
5 4hyg_A Putative uncharacterize 7.6 9.1E+02 0.031 23.1 7.0 18 154-171 60-77 (301)
6 1c8b_A Spore protease; novel f 6.7 1.7E+02 0.0059 28.9 1.5 50 10-80 181-230 (371)
7 1q90_G Cytochrome B6F complex 6.3 5E+02 0.017 17.7 3.2 26 296-321 5-30 (37)
8 3s98_A Interferon alpha/beta r 6.1 2.3E+02 0.0077 25.4 2.0 41 39-80 261-302 (306)
9 2j5d_A BNIP3 TM, BCL2/adenovir 5.7 5.4E+02 0.018 18.2 3.3 19 301-319 25-43 (45)
10 1vf5_G Protein PET G; photosyn 5.4 3.4E+02 0.012 18.5 2.0 27 295-321 4-30 (37)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.11 E-value=2.9e+02 Score=24.74 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhhc--cHHHHHHHHHHHHHHHHHH
Q 019035 305 LLATSFAVLGGAFLANYI--SEKLVGYIGGVLFLVFAVA 341 (347)
Q Consensus 305 ~l~t~lAV~~G~~l~~~I--p~~~i~~~agvlFl~FGv~ 341 (347)
.++..++.+...++.+|+ ..+.+..++.++....+..
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 345555555666667777 6666666655555444443
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.65 E-value=2.9e+02 Score=17.89 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019035 328 GYIGGVLFLVFAVATF 343 (347)
Q Consensus 328 ~~~agvlFl~FGv~tL 343 (347)
.+++-+-|+.||.|.+
T Consensus 11 glvalltflafgfwlf 26 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455567899999875
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=9.10 E-value=5.5e+02 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 019035 310 FAVLGGAFLANYISEKLVGYIGGVLFLVFAVAT 342 (347)
Q Consensus 310 lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~t 342 (347)
++.+++.++++|+-.|.+-.++.++|.+.++.+
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777777777766543
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.90 E-value=6.6e+02 Score=23.00 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=30.2
Q ss_pred HhhHHHHHHHHHhhhcCchhHHHHHHHHcccCchh-HHHHHHHH-HHHHHHHHHHHHhhh
Q 019035 131 KSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVL-VLLGSMAA-LALMTVLSVVIGIIF 188 (347)
Q Consensus 131 ~~~f~~sF~lIflAEiGDKTQlia~lLA~Ry~~~~-Vf~Ga~~A-l~l~t~LaV~~G~~l 188 (347)
.+++++.|.++.+.|+-=-+ ...|+..+ +..|+..+ ++..+.++..+...+
T Consensus 32 lSALLaGFAMVAmVE~ql~~-------~~~~p~~LLi~fav~Ttllv~vml~AlMIsTcI 84 (214)
T 4hkr_A 32 TSALLSGFAMVAMVEVQLDH-------DTNVPPGMLIAFAICTTLLVAVHMLALMISTCI 84 (214)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccceeeEEEEeccC-------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999995100 22455544 44444444 466788888888754
No 5
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=7.64 E-value=9.1e+02 Score=23.14 Aligned_cols=18 Identities=6% Similarity=0.034 Sum_probs=11.4
Q ss_pred HHHHHcccCchhHHHHHH
Q 019035 154 AALLAMQYEKVLVLLGSM 171 (347)
Q Consensus 154 a~lLA~Ry~~~~Vf~Ga~ 171 (347)
-++++.||+..|++-+.+
T Consensus 60 ~mL~l~k~~~~~ii~~ii 77 (301)
T 4hyg_A 60 VLLVLLRTGGRRFIAAFI 77 (301)
T ss_dssp HHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHhchHHHHHHHH
Confidence 456778888776544433
No 6
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=6.65 E-value=1.7e+02 Score=28.91 Aligned_cols=50 Identities=26% Similarity=0.493 Sum_probs=36.7
Q ss_pred ccccCCCchhhhhccCcchhhhhccccCCCcchhhhhccccccccceeeeeccccccCCCCCCCccccccc
Q 019035 10 VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQK 80 (347)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (347)
++.+.|+++.-++|+|- ||...|+. -.+|.+|-+|-+|+--||.-++..+
T Consensus 181 Iv~k~kPd~VIAIDALA----------------ars~~Rl~-----~TIQIsdTGI~PGSGVGN~R~~ls~ 230 (371)
T 1c8b_A 181 VVKKVNPDFIIAIDALA----------------ARSIERVN-----ATIQISDSGIHPGSGVGNKRKEISY 230 (371)
T ss_dssp HHHHHCCSEEEEEEEEC----------------CSSGGGSS-----SEEEEETTCBCSCSSSSCCCCBSSS
T ss_pred HHHhcCCCEEEEEchhh----------------cCcHhhcC-----CeEEECCCCCCCCcCCCccccccCH
Confidence 45677999999999987 77766654 2478999999888866665555433
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.33 E-value=5e+02 Score=17.67 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=20.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhhhh
Q 019035 296 VASGAIAGHLLATSFAVLGGAFLANY 321 (347)
Q Consensus 296 V~~Ga~lal~l~t~lAV~~G~~l~~~ 321 (347)
...|.++|++-+|..+..+-.++..+
T Consensus 5 lL~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 45799999999998888877776543
No 8
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=6.12 E-value=2.3e+02 Score=25.40 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=23.6
Q ss_pred Ccchhhhhccc-cccccceeeeeccccccCCCCCCCccccccc
Q 019035 39 PSLRCRELSRL-NLSHGKFIVQASNIGVGSGGHEGSNESENQK 80 (347)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (347)
...+|.....+ ..-.+.|||+|.| +-|.+.|+...+-+.++
T Consensus 261 ~~~~c~~~~~~~~~~~Y~~RV~A~n-~~~~s~~s~~~~~~~~~ 302 (306)
T 3s98_A 261 KTTQCVFPQNVFQKGIYLLRVQASD-GNNTSFWSEEIKFDTEI 302 (306)
T ss_dssp SSSEEEEEGGGSCSSEEEEEEEEEC-SSCBCCCCCCEEEEC--
T ss_pred CCccccCchhhcccCCEEEEEEEcc-CCCccccccccccCccc
Confidence 33456554433 3345789999999 45556666665555443
No 9
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=5.71 E-value=5.4e+02 Score=18.20 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019035 301 IAGHLLATSFAVLGGAFLA 319 (347)
Q Consensus 301 ~lal~l~t~lAV~~G~~l~ 319 (347)
..-|+++.++++++|+.++
T Consensus 25 l~shiL~~GlgIyIGkRLs 43 (45)
T 2j5d_A 25 LLSHLLAIGLGIYIGRRLT 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEeeeeec
Confidence 3456777777777777664
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=5.43 E-value=3.4e+02 Score=18.53 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred eeehHHHHHHHHHHHHHHHHHHHhhhh
Q 019035 295 GVASGAIAGHLLATSFAVLGGAFLANY 321 (347)
Q Consensus 295 ~V~~Ga~lal~l~t~lAV~~G~~l~~~ 321 (347)
+...|.++|++-+|..+..+-.++..+
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHh
Done!