Query 019035
Match_columns 347
No_of_seqs 231 out of 1229
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019035.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019035hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 34.8 59 0.0043 25.8 7.6 29 307-335 271-299 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 26.9 1.5E+02 0.011 24.0 12.0 16 308-323 298-313 (447)
3 d1wfta_ b.1.2.1 (A:) Host cell 12.1 43 0.0031 24.0 1.7 26 47-73 83-109 (123)
4 d2dtge1 b.1.2.1 (E:808-909) In 10.6 50 0.0037 23.0 1.6 27 44-71 65-91 (102)
5 d1c8ba_ c.56.1.2 (A:) Germinat 8.8 56 0.0041 30.0 1.5 51 10-81 181-231 (371)
6 d1wisa1 b.1.2.1 (A:8-118) Side 8.4 53 0.0038 22.6 1.0 25 47-72 77-102 (111)
7 d2d9qb2 b.1.2.1 (B:204-308) Gr 6.7 97 0.007 21.2 1.7 26 46-72 68-94 (105)
8 d1iarb2 b.1.2.1 (B:97-197) Int 6.4 1.1E+02 0.008 20.4 1.9 26 45-71 66-92 (101)
9 d1n26a3 b.1.2.1 (A:196-299) In 6.2 1E+02 0.0073 21.0 1.6 20 52-72 72-91 (104)
10 d1x5ja1 b.1.2.1 (A:8-107) Neog 6.0 1.1E+02 0.0077 20.4 1.5 21 52-73 72-92 (100)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=34.76 E-value=59 Score=25.75 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 019035 307 ATSFAVLGGAFLANYISEKLVGYIGGVLF 335 (347)
Q Consensus 307 ~t~lAV~~G~~l~~~Ip~~~i~~~agvlF 335 (347)
+..++......+.+|...+.+-.++.++.
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 299 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccchhhhHHHH
Confidence 33344444445556666665555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.92 E-value=1.5e+02 Score=24.04 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhhcc
Q 019035 308 TSFAVLGGAFLANYIS 323 (347)
Q Consensus 308 t~lAV~~G~~l~~~Ip 323 (347)
..++.+++.++.+++.
T Consensus 298 ~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 298 GIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhhhhcc
Confidence 3344444444444443
No 3
>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.14 E-value=43 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=18.4
Q ss_pred ccccc-cccceeeeeccccccCCCCCCC
Q 019035 47 SRLNL-SHGKFIVQASNIGVGSGGHEGS 73 (347)
Q Consensus 47 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (347)
..|++ -.+.|||+|.|. .|.|.|+.-
T Consensus 83 ~~L~p~t~Y~frV~A~N~-~G~Gp~S~~ 109 (123)
T d1wfta_ 83 IDYTSRPAIVFRISAKNE-KGYGPATQI 109 (123)
T ss_dssp CBCSSSCEEEEEEEEBSS-SSBCCCEEE
T ss_pred cCCCCCCEEEEEEEEecC-CcCCCCCCc
Confidence 34444 568999999995 577777653
No 4
>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.58 E-value=50 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=18.4
Q ss_pred hhhccccccccceeeeeccccccCCCCC
Q 019035 44 RELSRLNLSHGKFIVQASNIGVGSGGHE 71 (347)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (347)
-.+.-|++-.+.|||+|.|.. |.|.++
T Consensus 65 ~~~~~L~~~tY~~rV~A~n~~-G~g~~S 91 (102)
T d2dtge1 65 CRLRGLSPGNYSVRIRATSLA-GNGSWT 91 (102)
T ss_dssp CCCCSCCSSEECCCCCEEETT-BCCCCC
T ss_pred EEEeccceeeEEEEEEEEcCC-ccCCCC
Confidence 344566777788999998854 555554
No 5
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]}
Probab=8.82 E-value=56 Score=30.04 Aligned_cols=51 Identities=25% Similarity=0.473 Sum_probs=37.9
Q ss_pred ccccCCCchhhhhccCcchhhhhccccCCCcchhhhhccccccccceeeeeccccccCCCCCCCcccccccc
Q 019035 10 VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQKI 81 (347)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (347)
++.+.|+-+.-++|+|- +|...|++. .+|.+|-+|-+|+=-||.-++.++.
T Consensus 181 iVek~kPD~VIaIDALA----------------aRs~~Rln~-----TIQIsDTGI~PGSGVGN~R~~l~~e 231 (371)
T d1c8ba_ 181 VVKKVNPDFIIAIDALA----------------ARSIERVNA-----TIQISDSGIHPGSGVGNKRKEISYE 231 (371)
T ss_dssp HHHHHCCSEEEEEEEEC----------------CSSGGGSSS-----EEEEETTCBCSCSSSSCCCCBSSSC
T ss_pred HHHhcCCCEEEEechhh----------------cCchhhccc-----eEEecCCCcCCCCCcCcccccCCHH
Confidence 46678888889999998 777666653 5899999998888666655555433
No 6
>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.43 E-value=53 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=18.2
Q ss_pred cccccc-ccceeeeeccccccCCCCCC
Q 019035 47 SRLNLS-HGKFIVQASNIGVGSGGHEG 72 (347)
Q Consensus 47 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 72 (347)
..|++- .+.|||+|-|. .|.|.|+.
T Consensus 77 ~~L~p~t~Y~frV~A~N~-~G~s~~S~ 102 (111)
T d1wisa1 77 PDLNPFTCYSFRMRQVNI-VGTSPPSQ 102 (111)
T ss_dssp CSCCTTSEECCCCEEECS-SCBCCCCC
T ss_pred CCCCCCCEEEEEEEEEcC-CcCCCCcC
Confidence 345553 68999999995 58877754
No 7
>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.66 E-value=97 Score=21.18 Aligned_cols=26 Identities=12% Similarity=-0.038 Sum_probs=16.9
Q ss_pred hcccccc-ccceeeeeccccccCCCCCC
Q 019035 46 LSRLNLS-HGKFIVQASNIGVGSGGHEG 72 (347)
Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 72 (347)
+..|++- .+.|||+|.| ..|.|.++.
T Consensus 68 i~~L~p~t~Y~frVra~n-~~g~G~~S~ 94 (105)
T d2d9qb2 68 LCGLLPATAYTLQIRCIR-WPLPGHWSD 94 (105)
T ss_dssp ECSCCSCCCEEEEEEEEE-CSSCCCCCC
T ss_pred EecccCCeEEEEEEEEEe-CCCCCCCcC
Confidence 3445543 4789999988 467776653
No 8
>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.36 E-value=1.1e+02 Score=20.42 Aligned_cols=26 Identities=15% Similarity=-0.078 Sum_probs=14.3
Q ss_pred hhcccccc-ccceeeeeccccccCCCCC
Q 019035 45 ELSRLNLS-HGKFIVQASNIGVGSGGHE 71 (347)
Q Consensus 45 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 71 (347)
.++.|++- .+.|||+|.|. .|.|.++
T Consensus 66 ~i~~L~p~t~Y~~rVrA~~~-~g~g~wS 92 (101)
T d1iarb2 66 AASTLKSGISYRARVRAWAQ-AYNTTWS 92 (101)
T ss_dssp CC-----CCCEEEEEEEECG-GGTCCCC
T ss_pred EECCCCCCCEEEEEEEEEcC-CCCCCCc
Confidence 44566664 77999999985 3555443
No 9
>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.20 E-value=1e+02 Score=20.96 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=14.5
Q ss_pred cccceeeeeccccccCCCCCC
Q 019035 52 SHGKFIVQASNIGVGSGGHEG 72 (347)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (347)
..+.|||+|.|. .|.|.++.
T Consensus 72 t~Y~~rVra~n~-~g~g~wSe 91 (104)
T d1n26a3 72 LRHVVQLRAQEE-FGQGEWSE 91 (104)
T ss_dssp CCEEEEEEEEET-TTBSCCCC
T ss_pred CEEEEEEEEEeC-CCccCCcC
Confidence 467899999985 36676654
No 10
>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.96 E-value=1.1e+02 Score=20.42 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=15.5
Q ss_pred cccceeeeeccccccCCCCCCC
Q 019035 52 SHGKFIVQASNIGVGSGGHEGS 73 (347)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~ 73 (347)
-.+.|||+|.|.. |.|.|+..
T Consensus 72 t~Y~~~V~a~n~~-g~s~~S~~ 92 (100)
T d1x5ja1 72 TLYEFSVMVTKGR-RSSTWSMT 92 (100)
T ss_dssp CEECCEEEEECSS-CBCCCCCC
T ss_pred CEEEEEEEEEeCC-cCcCCCCe
Confidence 4678999999864 77776654
Done!