Query 019038
Match_columns 347
No_of_seqs 127 out of 228
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 5E-111 1E-115 798.7 22.6 312 6-344 4-319 (319)
2 PF04080 Per1: Per1-like ; In 100.0 3E-106 6E-111 766.7 24.0 254 68-336 2-267 (267)
3 COG5237 PER1 Predicted membran 100.0 3E-91 6.6E-96 650.5 18.5 297 13-340 9-315 (319)
4 PF05875 Ceramidase: Ceramidas 97.5 0.011 2.3E-07 56.3 17.6 186 118-333 24-236 (262)
5 PF03006 HlyIII: Haemolysin-II 97.4 0.0049 1.1E-07 56.0 14.2 158 166-326 45-220 (222)
6 PF12036 DUF3522: Protein of u 97.3 0.0052 1.1E-07 56.3 12.4 86 169-267 34-130 (186)
7 TIGR01065 hlyIII channel prote 95.8 0.41 8.9E-06 44.2 14.9 151 165-329 39-198 (204)
8 PRK15087 hemolysin; Provisiona 95.3 0.86 1.9E-05 42.8 15.0 149 166-330 55-211 (219)
9 KOG0748 Predicted membrane pro 86.9 33 0.00072 33.7 17.0 156 179-340 98-275 (286)
10 COG1272 Predicted membrane pro 75.2 39 0.00084 32.3 10.9 41 166-206 59-104 (226)
11 PF13965 SID-1_RNA_chan: dsRNA 60.3 86 0.0019 33.9 11.0 31 307-337 528-561 (570)
12 PRK09867 hypothetical protein; 49.1 2.4E+02 0.0053 26.8 13.3 132 166-303 11-152 (209)
13 PF11416 Sed5p: Integral membr 46.3 10 0.00022 25.2 0.9 20 23-42 3-22 (29)
14 PF10277 Frag1: Frag1/DRAM/Sfk 45.9 2.2E+02 0.0047 25.3 12.6 91 110-207 41-133 (215)
15 PF10709 DUF2511: Protein of u 28.2 23 0.0005 29.1 0.4 14 104-117 5-18 (87)
16 PF09997 DUF2238: Predicted me 26.5 2.5E+02 0.0054 25.1 6.7 98 204-303 5-112 (143)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.6e-111 Score=798.68 Aligned_cols=312 Identities=46% Similarity=0.882 Sum_probs=283.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCChhHHHHHHHhhhcCCCCCCccccccCCCCCCCCCCCCccCcchhhhhccCCCCCCCC
Q 019038 6 LIALFLLISCTLPALYASDGDADPIYKGCVEQCEKTGCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCR 85 (347)
Q Consensus 6 ~~~~~~~~~~~~~~~~AS~GD~~p~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~ 85 (347)
+.++++++.++ ...+||+||++|+|++||++||.++|+++.+. |+.+ +..|++.|++.|||.+||+
T Consensus 4 ~~v~~ll~~c~-~~~~aS~GD~~~~y~~Cv~~Ce~~~c~~~~~~-----~~~~--------~~~~l~~r~~~wdc~s~C~ 69 (319)
T KOG2970|consen 4 WVVKFLLLKCL-VQFEASPGDRKPGYVDCVQGCEANECSNNYID-----PQTN--------MFHPLYTRLWAWDCCSDCR 69 (319)
T ss_pred eehHHHHHHHH-hhhccCCCCCchhHHHHHHHHhhccCCCCcCC-----cccc--------ccchhHHHHHhcCcchhcC
Confidence 34444444444 56889999999999999999999999986533 2223 2349999999999999999
Q ss_pred cccchHhhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHH
Q 019038 86 YHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLW 165 (347)
Q Consensus 86 Y~Cm~~~t~~r~~~g~~v~QFhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 165 (347)
|+||+.++++|.++|+|++||||||||+||+||||||||+||++||++||+|+.+ +|.+.+++++.+|+ ++|
T Consensus 70 Y~Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~ 141 (319)
T KOG2970|consen 70 YQCMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLW 141 (319)
T ss_pred ceeeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cch
Confidence 9999999999999999999999999999999999999999999999999999754 66677788888887 799
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccchhhhHhhHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHhhhccccc
Q 019038 166 HIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE-AARVMVAAPLIAFVTTHILYLNFYK 244 (347)
Q Consensus 166 ~~~~~v~m~aW~wStiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~-~~r~~~~~~~~~~~~~Hi~yL~~~~ 244 (347)
++|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||++++
T Consensus 142 ~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~ 221 (319)
T KOG2970|consen 142 LIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYN 221 (319)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999999999999999999999999999999999876 7889999999999999999999999
Q ss_pred cccCCCcCCchhhHHHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHH--HHHHHHHhHhhcCCCCCcchhhhhhhhcCch
Q 019038 245 LDHVNHIAGLNMKVCLAMGVAQLLIWAIWAG-VTRHPSRWKLWLVVV--GEGLAMLLQIYDFPPYRGFVDAHALYHAANI 321 (347)
Q Consensus 245 fdY~~~~~~YNM~~nv~~G~~~~~lw~~~~~-~~~~~~~~~~~~~v~--~~~~amsLEl~DFpP~~~~iDAHaLWHl~TI 321 (347)
||| ||||++||++|++|+++|..|++ ++++|+.|+++++.+ ++.+||+|||+||||+.|+||||||||++||
T Consensus 222 fdY-----gyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~~iDAHALWHlaTI 296 (319)
T KOG2970|consen 222 FDY-----GYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAWLIDAHALWHLATI 296 (319)
T ss_pred ccc-----ccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhhhcchHHHHHhhcC
Confidence 999 99999999999999999999994 567899999775444 5699999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhHHHhhhc
Q 019038 322 PLTYLWWSFIRDDSEFRTTALLK 344 (347)
Q Consensus 322 p~~~~wY~Fl~~D~~~~~~~~~~ 344 (347)
|++++||+|+.+|+++.|++++|
T Consensus 297 plt~~~~~Fv~~d~~~~t~~~l~ 319 (319)
T KOG2970|consen 297 PLTILWYDFVSDDYDFATGVRLK 319 (319)
T ss_pred ccHHHHHHHhhchhhhhcceecC
Confidence 99999999999999999997765
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=2.7e-106 Score=766.71 Aligned_cols=254 Identities=47% Similarity=0.850 Sum_probs=234.4
Q ss_pred CcchhhhhccCCCCCCCCcccchHhhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHh
Q 019038 68 QEPLYLRWKQWDCSSDCRYHCMLAREGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYY 147 (347)
Q Consensus 68 ~~pl~l~l~~W~C~sdC~Y~Cm~~~t~~r~~~g~~v~QFhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~G~~~~~~~~~~ 147 (347)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++|||||+||+||++|+++|++|+++++ +
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~----~ 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFR----R 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998854 3
Q ss_pred hCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCCCccchhhhHhhHHHHHHHHHHHHHHhccCc-hhHHHHHHH
Q 019038 148 KLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR-DEAARVMVA 226 (347)
Q Consensus 148 ~~~~~~~~~~~y~~~~~~~~~~~v~m~aW~wStiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~-~~~~r~~~~ 226 (347)
+.|.+.+.+++ |+++++||||||+||||||+||+++|||||||||+++|++|+|++++|+|+++ ++..+.+++
T Consensus 78 ~~~~~~p~~~~------~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYPY------YIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcCe------eehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 44444333332 57899999999999999999999999999999999999999999999999994 456778999
Q ss_pred HHHHHHHHHHhhhccccccccCCCcCCchhhHHHHHHHHHHHHHHHHHhhhcCCcc---------hHHH--HHHHHHHHH
Q 019038 227 APLIAFVTTHILYLNFYKLDHVNHIAGLNMKVCLAMGVAQLLIWAIWAGVTRHPSR---------WKLW--LVVVGEGLA 295 (347)
Q Consensus 227 ~~~~~~~~~Hi~yL~~~~fdY~~~~~~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~---------~~~~--~~v~~~~~a 295 (347)
++|+++|++||.||++++||| ||||++||++|++|+++|+.|++.++++.+ ++++ ++++++.+|
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY-----~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~la 226 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDY-----GYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILA 226 (267)
T ss_pred HHHHHHHHHHHHHcccccccc-----HhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999998754333 7777 788899999
Q ss_pred HHhHhhcCCCCCcchhhhhhhhcCchhhHHHHHHHHHhhhh
Q 019038 296 MLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDSE 336 (347)
Q Consensus 296 msLEl~DFpP~~~~iDAHaLWHl~TIp~~~~wY~Fl~~D~~ 336 (347)
|+|||+||||+++++|||||||++||||+++||+|+++|+|
T Consensus 227 m~LEl~DFpP~~~~lDAHALWHl~Tip~~~~wy~Fl~~D~~ 267 (267)
T PF04080_consen 227 MSLELFDFPPIFWLLDAHALWHLATIPPTYLWYDFLIDDAE 267 (267)
T ss_pred HHHHhhccCcccccchHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999986
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3e-91 Score=650.46 Aligned_cols=297 Identities=30% Similarity=0.417 Sum_probs=257.8
Q ss_pred HHHhhccccCCCCCCChhHHHHHHHhhhc-CCCCCCccccccCCCCCCCCCCCCccCcchhhhhccCCCCCCCCcccchH
Q 019038 13 ISCTLPALYASDGDADPIYKGCVEQCEKT-GCVGDKCFQHCNFSSDGKPIDGPWYLQEPLYLRWKQWDCSSDCRYHCMLA 91 (347)
Q Consensus 13 ~~~~~~~~~AS~GD~~p~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~W~C~sdC~Y~Cm~~ 91 (347)
++.+...+.|||||++|||++|+.+|++. .|..++ +| . ...|++.++++|||.|+|+|+|++.
T Consensus 9 ~l~~~~~vt~s~gd~~~~~~~C~~~C~en~rc~~n~--------~d-----t---n~~pL~~klf~wDc~s~cgy~C~~~ 72 (319)
T COG5237 9 LLVHCFLVTCSPGDNLDEMKYCFGKCFENSRCNLNK--------TD-----T---NMFPLVDKLFGWDCDSKCGYMCHLL 72 (319)
T ss_pred HHHHHheeecCCCCCcHHHHHHHHHHHHhcccCCCc--------CC-----c---ccccHHHHHHcCccccccchHHHHH
Confidence 33344468899999999999999999966 885432 11 1 2568999999999999999999999
Q ss_pred hhHhhhhcCCCCccccccCCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCC-CCCccchhhhhHHHHHHH
Q 019038 92 REGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLR-PDKKTYYEYTGLWHIYGI 170 (347)
Q Consensus 92 ~t~~r~~~g~~v~QFhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~G~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~ 170 (347)
.++-+.++++|+.||||||||.||+||||+||++||++|+++||.|+.++. ++.+.. +.+|.+| +.+++
T Consensus 73 ~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~~R~~~------l~wv~ 142 (319)
T COG5237 73 CLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRML----RKILRETRLGRLYY------LQWVY 142 (319)
T ss_pred HHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccccceEE------eeHHH
Confidence 999999999999999999999999999999999999999999999998743 344433 3344444 34579
Q ss_pred HHHHHHHHHhhhhccCCCccchhhhHhhHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHhhhccccccc
Q 019038 171 LAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRD----EAARVMVAAPLIAFVTTHILYLNFYKLD 246 (347)
Q Consensus 171 v~m~aW~wStiFH~RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~----~~~r~~~~~~~~~~~~~Hi~yL~~~~fd 246 (347)
+||+||+||+|||+||+++|||+|||+|+++|++|+|++.+|+.++.. +..|...+++++++|++||.||++++||
T Consensus 143 igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i~fd 222 (319)
T COG5237 143 IGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNIEFD 222 (319)
T ss_pred HHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhccce
Confidence 999999999999999999999999999999999999999999998764 3456677899999999999999999999
Q ss_pred cCCCcCCchhhHHHHHHHHHHHHHHHHHhhhcCC--cchHHH--HHHHHHHHHHHhHhhcCCCCCcchhhhhhhhcCchh
Q 019038 247 HVNHIAGLNMKVCLAMGVAQLLIWAIWAGVTRHP--SRWKLW--LVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIP 322 (347)
Q Consensus 247 Y~~~~~~YNM~~nv~~G~~~~~lw~~~~~~~~~~--~~~~~~--~~v~~~~~amsLEl~DFpP~~~~iDAHaLWHl~TIp 322 (347)
| +|||++|+++|+.|++||...+..+++. ..||-+ .+|+.+.+||||||+||||+-++||||||||++|+|
T Consensus 223 Y-----~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~pya~lIDaHAlWHL~t~~ 297 (319)
T COG5237 223 Y-----VYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFPPYAYLIDAHALWHLITCI 297 (319)
T ss_pred e-----eehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccCcHHHHhhHHHHhHhhhcc
Confidence 9 9999999999999999999999876543 223332 456688899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhHHH
Q 019038 323 LTYLWWSFIRDDSEFRTT 340 (347)
Q Consensus 323 ~~~~wY~Fl~~D~~~~~~ 340 (347)
++.+.|.|..+|..|..+
T Consensus 298 ~t~~ly~F~~~d~~y~~n 315 (319)
T COG5237 298 STPFLYLFWSGDVYYHGN 315 (319)
T ss_pred chHHHHHhhhcceeeecc
Confidence 999999999999988765
No 4
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.46 E-value=0.011 Score=56.30 Aligned_cols=186 Identities=16% Similarity=0.078 Sum_probs=96.3
Q ss_pred ccchHHHHHHHhhHHHHHhhhHHHHHHHHhhCCCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCCCccchhhhHh
Q 019038 118 IQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSS 197 (347)
Q Consensus 118 iQEp~Sv~FSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~m~aW~wStiFH~RD~~~TEklDYf~ 197 (347)
+=||.=++-++.=+++-..|+.+. ++ .+.+. .+ . ..+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~---~~~~~-~~---~---l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RR---RGLER-RF---A---LLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hh---ccccc-hh---H---HHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 568998887777777777776552 12 11111 11 1 2223333344 889999998889999999777
Q ss_pred hHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH----HHHHHHhhhccccccccCCCcCCchhhHHHHHHHHHHHHHHHH
Q 019038 198 AVALLGFNFILAILRAFSVRDEAARVMVAAPLI----AFVTTHILYLNFYKLDHVNHIAGLNMKVCLAMGVAQLLIWAIW 273 (347)
Q Consensus 198 A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~----~~~~~Hi~yL~~~~fdY~~~~~~YNM~~nv~~G~~~~~lw~~~ 273 (347)
-.-..+..++....|.. .++..|......+. +..+.|.. ..+... | ++.+|.....+.+.-
T Consensus 89 Ml~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~t~~~~~---~~~p~~-------~---~~~f~~~~~~~~~~~ 153 (262)
T PF05875_consen 89 MLWATLLFLYIVLTRRY--SSPRYRLALPLLLFIYAVVVTVLYFV---LDNPVF-------H---QIAFASLVLLVILRS 153 (262)
T ss_pred HHHHHHHHHHHHhcccc--cCchhhHHHHHHHHHHHHHHHHHHhh---hccchh-------h---hhhHHHHHHHHHHHH
Confidence 54333333433333333 11112222222211 12223332 112111 1 223333333322211
Q ss_pred H--hhh------cCCcchHHH-HHHHHHHHHHHhHhhcC--------------CCCCcchhhhhhhhcCchhhHHHHHHH
Q 019038 274 A--GVT------RHPSRWKLW-LVVVGEGLAMLLQIYDF--------------PPYRGFVDAHALYHAANIPLTYLWWSF 330 (347)
Q Consensus 274 ~--~~~------~~~~~~~~~-~~v~~~~~amsLEl~DF--------------pP~~~~iDAHaLWHl~TIp~~~~wY~F 330 (347)
. .+. +++...++. ..++...+|..+-..|- .|+..++--|++||+.|---+++...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 154 IYLIRRRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVF 233 (262)
T ss_pred HHHHHHhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 111 122223333 34445677888888886 355567789999999998888887776
Q ss_pred HHh
Q 019038 331 IRD 333 (347)
Q Consensus 331 l~~ 333 (347)
.+-
T Consensus 234 ~~~ 236 (262)
T PF05875_consen 234 VAY 236 (262)
T ss_pred HHH
Confidence 543
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.41 E-value=0.0049 Score=56.03 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhhhhc-------cCCCccchhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHH-HHHHHHHHh
Q 019038 166 HIYGILAMNSWFWSAVFHS-------RDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAP-LIAFVTTHI 237 (347)
Q Consensus 166 ~~~~~v~m~aW~wStiFH~-------RD~~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~-~~~~~~~Hi 237 (347)
.+|.+-.+.-.+.||++|+ +.-..-.|+||.+-...+..+..-...-.+.-++.......... ++++....
T Consensus 45 ~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~- 123 (222)
T PF03006_consen 45 LIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIV- 123 (222)
T ss_pred HHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHH-
Confidence 4566777777899999999 34567789999997666655543333222311122212111111 11111111
Q ss_pred hhccccccccCCCcCCchhhHHHHHHHHHHHHHHHHHhhhc---CCc-chHHHHHHHHHHHHHHhHhhcCCCCC--cchh
Q 019038 238 LYLNFYKLDHVNHIAGLNMKVCLAMGVAQLLIWAIWAGVTR---HPS-RWKLWLVVVGEGLAMLLQIYDFPPYR--GFVD 311 (347)
Q Consensus 238 ~yL~~~~fdY~~~~~~YNM~~nv~~G~~~~~lw~~~~~~~~---~~~-~~~~~~~v~~~~~amsLEl~DFpP~~--~~iD 311 (347)
..+ ...++. +....--+.+-+++|....+.......... .|. ........++-.+|+.+-..++|.-+ +-+|
T Consensus 124 ~~~-~~~~~~-~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD 201 (222)
T PF03006_consen 124 LSL-FPCFSS-PRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFD 201 (222)
T ss_pred hhc-chhhcC-CccceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcC
Confidence 111 112221 000023334445555555444443121111 111 11122233455778889999987632 3344
Q ss_pred ----hhhhhhcCchhhHHH
Q 019038 312 ----AHALYHAANIPLTYL 326 (347)
Q Consensus 312 ----AHaLWHl~TIp~~~~ 326 (347)
+|.+||+.++--++.
T Consensus 202 ~~g~sHqi~Hi~v~~~~~~ 220 (222)
T PF03006_consen 202 IWGHSHQIWHIFVVLAALC 220 (222)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 999999988754443
No 6
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=97.25 E-value=0.0052 Score=56.34 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhccC-CC----cc----chhhhHhhHHHHHHHHHHHHHHhccCchhHHH--HHHHHHHHHHHHHHh
Q 019038 169 GILAMNSWFWSAVFHSRD-VE----LT----EKLDCSSAVALLGFNFILAILRAFSVRDEAAR--VMVAAPLIAFVTTHI 237 (347)
Q Consensus 169 ~~v~m~aW~wStiFH~RD-~~----~T----EklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r--~~~~~~~~~~~~~Hi 237 (347)
+.++..+=++|+.+|+.| .+ ++ ++|||......++. ....++..-++++...+ .++.++++++..
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~-~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~--- 109 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLS-IWVTLCAMARLDEPLKSVLHYFGALVIAIFQ--- 109 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---
Confidence 678889999999999999 55 44 47888776543332 23333333334433222 233333333332
Q ss_pred hhccccccccCCCcCCchhhHHHHHHHHHH
Q 019038 238 LYLNFYKLDHVNHIAGLNMKVCLAMGVAQL 267 (347)
Q Consensus 238 ~yL~~~~fdY~~~~~~YNM~~nv~~G~~~~ 267 (347)
.. .+||+ .|+..-+++|++-.
T Consensus 110 -~~--~~~~~------~~~~~Pi~~~~~i~ 130 (186)
T PF12036_consen 110 -QK--DRWSL------WNTIGPILIGLLIL 130 (186)
T ss_pred -hh--Ccccc------hhhHHHHHHHHHHH
Confidence 22 47887 46666666666443
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=95.84 E-value=0.41 Score=44.20 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC-----CccchhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhh
Q 019038 165 WHIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILY 239 (347)
Q Consensus 165 ~~~~~~v~m~aW~wStiFH~RD~-----~~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hi~y 239 (347)
..+|+.-.+..-+.||+||+-+. .+-+|+||.+-..+|.-+..=...-.+ +.+....+..+..++..+.=+..
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~--~~~~~~~~~~~iw~la~~gi~~~ 116 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLAL--PGPLGWTVLWIIWGLAIGGIIYK 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888999999998773 145688999877666655443333333 22222222221111111110111
Q ss_pred -ccccccccCCCcCCchhhHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH---HHHHHHHHhHhhcCCCCCcchhhhhh
Q 019038 240 -LNFYKLDHVNHIAGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLVV---VGEGLAMLLQIYDFPPYRGFVDAHAL 315 (347)
Q Consensus 240 -L~~~~fdY~~~~~~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~v---~~~~~amsLEl~DFpP~~~~iDAHaL 315 (347)
+...+++- .-+..=+++|..-.+..-.. ...-+.. -+..++ +.-..++.+=..|+|--+ +-|.+
T Consensus 117 ~~~~~~~r~------~r~~~y~~~G~~~v~~~~~~--~~~~~~~-~~~~l~~gg~~Y~~G~~fY~~~~p~~~---~~H~i 184 (204)
T TIGR01065 117 LFFHKRPRW------LSLFLYLIMGWLVVLVIKPL--YHNLPGA-GFSLLAAGGLLYTVGAIFYALKWPIPF---TYHAI 184 (204)
T ss_pred HHccCCCch------hHHHHHHHHHHHHHHHHHHH--HHhCCHH-HHHHHHHHhHHHHcchHheeecCCCCC---CcChH
Confidence 11122222 23333444554433322111 1111211 111111 233456666667877433 12999
Q ss_pred hhcCchhhHHHHHH
Q 019038 316 YHAANIPLTYLWWS 329 (347)
Q Consensus 316 WHl~TIp~~~~wY~ 329 (347)
||+..+-=+...|-
T Consensus 185 wH~fV~~g~~~h~~ 198 (204)
T TIGR01065 185 WHLFVLGASACHFV 198 (204)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988766666553
No 8
>PRK15087 hemolysin; Provisional
Probab=95.25 E-value=0.86 Score=42.75 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhhhhccCCC----ccchhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhhcc
Q 019038 166 HIYGILAMNSWFWSAVFHSRDVE----LTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLN 241 (347)
Q Consensus 166 ~~~~~v~m~aW~wStiFH~RD~~----~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hi~yL~ 241 (347)
.+|+.-.+.--..||+||+=..+ +=+|+||.+-..+|.-+..=...-.+ +.+..+.++.+.-....+.=+..+.
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~Gi~~~~~ 132 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALLGILFKLA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56787788889999999985521 33469999866655544332222222 2333332222111111111111221
Q ss_pred -ccccccCCCcCCchhhHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH---HHHHHHHhHhhcCCCCCcchhhhhhhh
Q 019038 242 -FYKLDHVNHIAGLNMKVCLAMGVAQLLIWAIWAGVTRHPSRWKLWLVVV---GEGLAMLLQIYDFPPYRGFVDAHALYH 317 (347)
Q Consensus 242 -~~~fdY~~~~~~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~v~---~~~~amsLEl~DFpP~~~~iDAHaLWH 317 (347)
..+|+. ..+..=+++|.+-.+.-.-+ ....+.. -+..++. .-+.++.+=..|-.|+ +|++||
T Consensus 133 ~~~~~r~------l~~~~Yl~mGw~~v~~~~~l--~~~~~~~-~l~~l~~GG~~Y~~G~~fY~~~~~p~-----~H~IwH 198 (219)
T PRK15087 133 FAHRFKV------LSLVTYLAMGWLSLIVIYQL--AIKLAIG-GVTLLAVGGVVYSLGVIFYVCKRIPY-----NHAIWH 198 (219)
T ss_pred hcCCCch------HHHHHHHHHHHHHHHHHHHH--HHhCCHH-HHHHHHHHhHHHHhhHHHHccCCCCC-----chhHHH
Confidence 223433 34455556665544432222 1122221 1111111 2245556656676666 799999
Q ss_pred cCchhhHHHHHHH
Q 019038 318 AANIPLTYLWWSF 330 (347)
Q Consensus 318 l~TIp~~~~wY~F 330 (347)
+..+.=+...|--
T Consensus 199 ~fVl~ga~~H~~a 211 (219)
T PRK15087 199 GFVLGGSVCHFLA 211 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9887777666643
No 9
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=86.89 E-value=33 Score=33.70 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=83.4
Q ss_pred HhhhhccCCC------ccchhhhHhhHHHHHHHHHHHHHHhccCchhHHHHHHH-HHHHHHHHHHhhhccc-cccccCCC
Q 019038 179 SAVFHSRDVE------LTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVA-APLIAFVTTHILYLNF-YKLDHVNH 250 (347)
Q Consensus 179 StiFH~RD~~------~TEklDYf~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~-~~~~~~~~~Hi~yL~~-~~fdY~~~ 250 (347)
|+++|+=-.- .==||||.+-.+++.-+....+.-.|.-... .|.+.. +.++...++ .+... .++. ..
T Consensus 98 S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~-~~~iy~~~~~~lgi~~--~~~~l~~~~~--~~ 172 (286)
T KOG0748|consen 98 SSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPF-FRLIYLPIILVLGLLA--IFVSLSDKFR--TP 172 (286)
T ss_pred HHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHH--heeechhhhC--Cc
Confidence 9999985444 2236899997776666665544444432222 222221 111111111 11111 1220 00
Q ss_pred cCCchhhHHHHHHHHHHHH-HHHHHhhh---cCCc-chH---HHHHHHHHHHHHHhHhhcCCCCC--cchhh----hhhh
Q 019038 251 IAGLNMKVCLAMGVAQLLI-WAIWAGVT---RHPS-RWK---LWLVVVGEGLAMLLQIYDFPPYR--GFVDA----HALY 316 (347)
Q Consensus 251 ~~~YNM~~nv~~G~~~~~l-w~~~~~~~---~~~~-~~~---~~~~v~~~~~amsLEl~DFpP~~--~~iDA----HaLW 316 (347)
. --+-|++++++....-+ =+.+.... +.+. ... ...-.++.++|..+=....|--+ +.+|- |-+|
T Consensus 173 ~-~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQif 251 (286)
T KOG0748|consen 173 K-RRPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIF 251 (286)
T ss_pred c-chhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHH
Confidence 0 23667777766542211 11111111 1011 111 11233455677788888888733 46665 9999
Q ss_pred hcCchhhHHHHHHHHHhhhhhHHH
Q 019038 317 HAANIPLTYLWWSFIRDDSEFRTT 340 (347)
Q Consensus 317 Hl~TIp~~~~wY~Fl~~D~~~~~~ 340 (347)
|...+--++.+++=...|.+.+-+
T Consensus 252 Hv~vv~~a~~~~~a~~~~~~~~~~ 275 (286)
T KOG0748|consen 252 HVLVVLAALFHLEAVLLDYEWRHS 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 10
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=75.15 E-value=39 Score=32.28 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhccCC-----CccchhhhHhhHHHHHHHH
Q 019038 166 HIYGILAMNSWFWSAVFHSRDV-----ELTEKLDCSSAVALLGFNF 206 (347)
Q Consensus 166 ~~~~~v~m~aW~wStiFH~RD~-----~~TEklDYf~A~a~vl~~l 206 (347)
.+|+.--+..-..||++|+=-. .+=+|+||.+-..+|.-+-
T Consensus 59 ~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAgSy 104 (226)
T COG1272 59 SIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAGSY 104 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHHHHHhh
Confidence 4566666667899999997443 4668999998766555443
No 11
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=60.26 E-value=86 Score=33.85 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred CcchhhhhhhhcCchh---hHHHHHHHHHhhhhh
Q 019038 307 RGFVDAHALYHAANIP---LTYLWWSFIRDDSEF 337 (347)
Q Consensus 307 ~~~iDAHaLWHl~TIp---~~~~wY~Fl~~D~~~ 337 (347)
.+..|.|-+||..... .+++.-.++-||.+.
T Consensus 528 ~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~ 561 (570)
T PF13965_consen 528 LGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDN 561 (570)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4778999999997643 334444555555543
No 12
>PRK09867 hypothetical protein; Provisional
Probab=49.07 E-value=2.4e+02 Score=26.81 Aligned_cols=132 Identities=9% Similarity=0.058 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccchhhhHh--hHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhhcccc
Q 019038 166 HIYGILAMNSWFWSAVFHSRDVELTEKLDCSS--AVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFY 243 (347)
Q Consensus 166 ~~~~~v~m~aW~wStiFH~RD~~~TEklDYf~--A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hi~yL~~~ 243 (347)
.+.+++-...|+||+|= -.|+.+.+- +.++++..+.....|.|++.+...-.++.-.++..+.+|-.|=...
T Consensus 11 ~~~~~~~~~v~i~s~I~------P~dr~~W~lE~~p~~i~~~~L~~t~rrf~ls~~~Y~li~i~~~lh~iGahYTYA~VP 84 (209)
T PRK09867 11 NTGALALTLILIYTGIS------AHDKLTWLMEVTPVIIVVPLLLATARRYPLTPLLYTLIFFHAIILMVGGQYTYAKVP 84 (209)
T ss_pred HHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHhcceeehhcCC
Confidence 34566777889999963 223444443 4566777777778899998876544444445555666676655222
Q ss_pred ccccCC-----CcCCchhhHHHHHHHHHHHHHHHHHhhhcC--CcchHH-HHHHHHHHHHHHhHhhcC
Q 019038 244 KLDHVN-----HIAGLNMKVCLAMGVAQLLIWAIWAGVTRH--PSRWKL-WLVVVGEGLAMLLQIYDF 303 (347)
Q Consensus 244 ~fdY~~-----~~~~YNM~~nv~~G~~~~~lw~~~~~~~~~--~~~~~~-~~~v~~~~~amsLEl~DF 303 (347)
=+|.++ .|..|.--++.+.|++-...---...+++. +.+|.. ..+.+.+..|+.-|++..
T Consensus 85 ~~~w~~d~fg~~RN~yDRlgHF~~Gf~~a~~~rEil~r~~~~~~~~w~~fl~~~~~laiSA~YEliEW 152 (209)
T PRK09867 85 VGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEW 152 (209)
T ss_pred hhHHHHHHhCcccccchhHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123222 667788899999998743332212122121 122222 113334556666787653
No 13
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=46.33 E-value=10 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCCCChhHHHHHHHhhhcC
Q 019038 23 SDGDADPIYKGCVEQCEKTG 42 (347)
Q Consensus 23 S~GD~~p~f~~Cv~~C~~~~ 42 (347)
|.-||--|||.||....+.+
T Consensus 3 ~IqdRT~EFqqcV~s~~k~n 22 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRN 22 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH-
T ss_pred chhHhhHHHHHHHHHHHHHH
Confidence 34589999999999998765
No 14
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=45.87 E-value=2.2e+02 Score=25.28 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCccccccccchHHHHHHHhhHHHHHhhhHHHHHHHHhh-C-CCCCCCccchhhhhHHHHHHHHHHHHHHHHhhhhccCC
Q 019038 110 WPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYK-L-PLRPDKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDV 187 (347)
Q Consensus 110 WPF~Rv~GiQEp~Sv~FSllNl~~h~~G~~~~~~~~~~~-~-~~~~~~~~~y~~~~~~~~~~~v~m~aW~wStiFH~RD~ 187 (347)
||+.-=.|.++|-+-+|+++-.+.-.-..- ....+++ . +..++.+.. ....-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLL--IVYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHH--HHHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 999999999999999999876654432211 1112222 1 111111111 222345678888888899999988887
Q ss_pred CccchhhhHhhHHHHHHHHH
Q 019038 188 ELTEKLDCSSAVALLGFNFI 207 (347)
Q Consensus 188 ~~TEklDYf~A~a~vl~~l~ 207 (347)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 4555666544444433
No 15
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.19 E-value=23 Score=29.12 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.0
Q ss_pred ccccccCCcccccc
Q 019038 104 VKYHGKWPFRRVYG 117 (347)
Q Consensus 104 ~QFhGKWPF~Rv~G 117 (347)
.||-+||||.|==|
T Consensus 5 ~~fG~~Wpft~eev 18 (87)
T PF10709_consen 5 FEFGDKWPFTVEEV 18 (87)
T ss_pred HHccCCCCceeeeE
Confidence 47889999998543
No 16
>PF09997 DUF2238: Predicted membrane protein (DUF2238); InterPro: IPR014509 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins, with several transmembrane segments.
Probab=26.54 E-value=2.5e+02 Score=25.10 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhhhcccccc-ccC----C-CcCCchhhHHHHHHHHHHHHHHHHHhhh
Q 019038 204 FNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKL-DHV----N-HIAGLNMKVCLAMGVAQLLIWAIWAGVT 277 (347)
Q Consensus 204 ~~l~~~~~R~f~l~~~~~r~~~~~~~~~~~~~Hi~yL~~~~f-dY~----~-~~~~YNM~~nv~~G~~~~~lw~~~~~~~ 277 (347)
..+.....|.|++.+.....++.-.++-.+..|-.|= .+.+ |++ + .|..|.--+..+.|++-...--=+..++
T Consensus 5 ~~~L~~t~rrf~ls~~~y~li~~~~~lh~iG~hYtYa-~VP~~~wl~~~fg~~RN~yDRl~Hf~~G~~~a~~~rE~l~r~ 83 (143)
T PF09997_consen 5 LIILIWTYRRFPLSNLAYWLIFLFLVLHMIGGHYTYA-EVPYFDWLKDLFGWQRNHYDRLVHFAQGFLPALPARELLIRK 83 (143)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCccccc-cCCHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3344556788888665443333333444555664443 2222 212 1 4567788899999988555544333332
Q ss_pred cCCcchHHH--H--HHHHHHHHHHhHhhcC
Q 019038 278 RHPSRWKLW--L--VVVGEGLAMLLQIYDF 303 (347)
Q Consensus 278 ~~~~~~~~~--~--~v~~~~~amsLEl~DF 303 (347)
.+.+.+.+ + +.+.+..++.-|++.+
T Consensus 84 -~~~~~~~~~~~l~v~~~laiSa~YEliEw 112 (143)
T PF09997_consen 84 -WPLRGGGWLFFLAVCVILAISAFYELIEW 112 (143)
T ss_pred -ccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222122 2 3334556677798864
Done!