Query 019038
Match_columns 347
No_of_seqs 127 out of 228
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 33.2 27 0.00092 21.0 2.1 13 260-272 7-19 (23)
2 3bkd_A Transmembrane domain of 31.7 29 0.00098 21.4 2.1 13 260-272 10-22 (26)
3 2kih_A Matrix protein 2; S31N, 20.8 54 0.0019 22.4 2.1 16 259-274 13-28 (43)
4 2ljb_A M2 protein, BM2 protein 20.5 58 0.002 21.5 2.1 14 259-272 13-26 (35)
5 3ux4_A Acid-activated UREA cha 18.6 2.8E+02 0.0096 24.8 6.9 28 193-220 73-103 (195)
6 2plx_B Peptide inhibitor; heli 10.5 93 0.0032 18.9 0.9 11 30-40 16-26 (26)
7 2cmy_B Beta trypsin, veronica 8.8 1E+02 0.0036 19.7 0.8 13 29-41 20-32 (34)
8 2l2r_A Antimicrobial peptide e 8.6 1.7E+02 0.0059 19.3 1.8 16 26-41 17-32 (37)
9 1mqs_B SED5P, integral membran 7.4 1.3E+02 0.0045 21.3 0.9 21 22-42 6-26 (50)
10 2vzy_A RV0802C; transferase, G 6.9 1E+02 0.0035 25.3 0.1 33 89-121 183-215 (218)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=33.25 E-value=27 Score=21.00 Aligned_cols=13 Identities=15% Similarity=0.744 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 019038 260 LAMGVAQLLIWAI 272 (347)
Q Consensus 260 v~~G~~~~~lw~~ 272 (347)
-++|+++.++|++
T Consensus 7 ~iigIlHLiLwIl 19 (23)
T 3lbw_A 7 SIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999985
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=31.73 E-value=29 Score=21.41 Aligned_cols=13 Identities=31% Similarity=0.945 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 019038 260 LAMGVAQLLIWAI 272 (347)
Q Consensus 260 v~~G~~~~~lw~~ 272 (347)
-++|+++.++|++
T Consensus 10 ~iiGilHLiLwIl 22 (26)
T 3bkd_A 10 SIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3589999999985
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=20.82 E-value=54 Score=22.36 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019038 259 CLAMGVAQLLIWAIWA 274 (347)
Q Consensus 259 nv~~G~~~~~lw~~~~ 274 (347)
--++|+++.++|++=-
T Consensus 13 a~iiGIlHLiLwildR 28 (43)
T 2kih_A 13 ANIIGILHLILWILDR 28 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3468999999999644
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=20.49 E-value=58 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.776 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 019038 259 CLAMGVAQLLIWAI 272 (347)
Q Consensus 259 nv~~G~~~~~lw~~ 272 (347)
--++|++++++|++
T Consensus 13 A~IigiLHlilWil 26 (35)
T 2ljb_A 13 ASIIGILHFIAWTI 26 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34689999999985
No 5
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=18.59 E-value=2.8e+02 Score=24.85 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=21.1
Q ss_pred hhhHhhHHHHHHH---HHHHHHHhccCchhH
Q 019038 193 LDCSSAVALLGFN---FILAILRAFSVRDEA 220 (347)
Q Consensus 193 lDYf~A~a~vl~~---l~~~~~R~f~l~~~~ 220 (347)
.||++|+...+|+ +|.++-|.++++.+.
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rg 103 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRP 103 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 6688877778888 556888999998765
No 6
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=10.52 E-value=93 Score=18.86 Aligned_cols=11 Identities=36% Similarity=1.195 Sum_probs=8.6
Q ss_pred hHHHHHHHhhh
Q 019038 30 IYKGCVEQCEK 40 (347)
Q Consensus 30 ~f~~Cv~~C~~ 40 (347)
.-+.|++.||+
T Consensus 16 llrrcldncek 26 (26)
T 2plx_B 16 LLRRCLDNCEK 26 (26)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhcccC
Confidence 46889999973
No 7
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=8.83 E-value=1e+02 Score=19.70 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=8.1
Q ss_pred hhHHHHHHHhhhc
Q 019038 29 PIYKGCVEQCEKT 41 (347)
Q Consensus 29 p~f~~Cv~~C~~~ 41 (347)
..-+.|++.||++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 4568999999864
No 8
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=8.60 E-value=1.7e+02 Score=19.28 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.9
Q ss_pred CCChhHHHHHHHhhhc
Q 019038 26 DADPIYKGCVEQCEKT 41 (347)
Q Consensus 26 D~~p~f~~Cv~~C~~~ 41 (347)
|.--+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 5666789999999854
No 9
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=7.38 E-value=1.3e+02 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.5
Q ss_pred CCCCCCChhHHHHHHHhhhcC
Q 019038 22 ASDGDADPIYKGCVEQCEKTG 42 (347)
Q Consensus 22 AS~GD~~p~f~~Cv~~C~~~~ 42 (347)
.|.=||..||+.|++.=++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 466799999999999888654
No 10
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=6.90 E-value=1e+02 Score=25.31 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=23.0
Q ss_pred chHhhHhhhhcCCCCccccccCCccccccccch
Q 019038 89 MLAREGEREKVGDKPVKYHGKWPFRRVYGIQEP 121 (347)
Q Consensus 89 m~~~t~~r~~~g~~v~QFhGKWPF~Rv~GiQEp 121 (347)
|....++..+.....+|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444455555555678999999999999999887
Done!