Query 019038
Match_columns 347
No_of_seqs 127 out of 228
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 09:56:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 18.2 14 0.001 27.4 0.3 9 105-113 2-10 (113)
2 d1dx5i1 g.3.11.1 (I:345-387) T 13.5 24 0.0017 22.7 0.5 8 82-89 10-17 (43)
3 d1wmta_ g.3.7.2 (A:) Istx {Sco 12.5 44 0.0032 20.7 1.6 17 32-48 11-28 (41)
4 d1uhaa1 g.3.1.1 (A:1-42) Lecti 10.1 39 0.0028 21.5 0.7 8 79-86 35-42 (42)
5 d1x5wa1 g.37.1.1 (A:8-35) Zinc 9.5 41 0.003 19.5 0.6 8 82-89 6-13 (28)
6 d1n8ma_ g.3.7.2 (A:) PI4, pota 8.4 63 0.0046 20.0 1.2 17 32-48 10-27 (38)
7 d1wpda_ g.3.7.2 (A:) Maurotoxi 7.1 71 0.0052 19.2 0.9 17 32-48 7-24 (34)
8 d1ulka2 g.3.1.1 (A:43-83) Lect 6.5 74 0.0054 20.1 0.8 10 77-86 32-41 (41)
9 d1ggla_ b.60.1.2 (A:) Cellular 6.0 52 0.0038 25.0 -0.2 19 103-121 1-19 (134)
10 d2fsja2 c.55.1.12 (A:1-164) Hy 5.6 77 0.0056 24.1 0.6 28 103-130 131-161 (164)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=18.19 E-value=14 Score=27.44 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.2
Q ss_pred cccccCCcc
Q 019038 105 KYHGKWPFR 113 (347)
Q Consensus 105 QFhGKWPF~ 113 (347)
.|.||||+.
T Consensus 2 ~~~G~~P~~ 10 (113)
T d1nyra1 2 ETKGAFPTW 10 (113)
T ss_dssp HHTTCCCTT
T ss_pred CCCCCCCcc
Confidence 589999963
No 2
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.52 E-value=24 Score=22.71 Aligned_cols=8 Identities=38% Similarity=1.443 Sum_probs=7.1
Q ss_pred CCCCcccc
Q 019038 82 SDCRYHCM 89 (347)
Q Consensus 82 sdC~Y~Cm 89 (347)
++|.||||
T Consensus 10 ~~CE~qCq 17 (43)
T d1dx5i1 10 ANCEYQCQ 17 (43)
T ss_dssp CCCSSEEE
T ss_pred CCcceeee
Confidence 68999998
No 3
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=12.48 E-value=44 Score=20.67 Aligned_cols=17 Identities=47% Similarity=1.132 Sum_probs=13.9
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 019038 32 KGCVEQCEKT-GCVGDKC 48 (347)
Q Consensus 32 ~~Cv~~C~~~-~C~~~~~ 48 (347)
.||-+.||+. +|...++
T Consensus 11 sdcyepcekkyncarakc 28 (41)
T d1wmta_ 11 SDCYEPCEKKYNCARAKC 28 (41)
T ss_dssp HHHHHHHHHTTSCCCCEE
T ss_pred ccccchHHHhhchHHHHH
Confidence 5899999977 9987653
No 4
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=10.06 E-value=39 Score=21.53 Aligned_cols=8 Identities=50% Similarity=1.410 Sum_probs=6.7
Q ss_pred CCCCCCCc
Q 019038 79 DCSSDCRY 86 (347)
Q Consensus 79 ~C~sdC~Y 86 (347)
.|.++|+|
T Consensus 35 GCqsnC~y 42 (42)
T d1uhaa1 35 GCQSQCDY 42 (42)
T ss_dssp TCCBCTTT
T ss_pred cccccCCc
Confidence 68888887
No 5
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.55 E-value=41 Score=19.52 Aligned_cols=8 Identities=50% Similarity=1.410 Sum_probs=6.8
Q ss_pred CCCCcccc
Q 019038 82 SDCRYHCM 89 (347)
Q Consensus 82 sdC~Y~Cm 89 (347)
+||.|.|.
T Consensus 6 ~ecsyscs 13 (28)
T d1x5wa1 6 SECSYSCS 13 (28)
T ss_dssp SSSSCEES
T ss_pred cccccccC
Confidence 48999995
No 6
>d1n8ma_ g.3.7.2 (A:) PI4, potassium channel blocking toxin 4 {Scorpion (Pandinus imperator) [TaxId: 55084]}
Probab=8.39 E-value=63 Score=19.97 Aligned_cols=17 Identities=41% Similarity=1.189 Sum_probs=13.6
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 019038 32 KGCVEQCEKT-GCVGDKC 48 (347)
Q Consensus 32 ~~Cv~~C~~~-~C~~~~~ 48 (347)
+||-..|+++ +|.++++
T Consensus 10 kdCy~PC~k~TGc~nakC 27 (38)
T d1n8ma_ 10 RDCYRPCQKRTGCPNAKC 27 (38)
T ss_dssp HHHHHHHHHHHSSCCEEE
T ss_pred chhcchHHHhcCCCchHH
Confidence 6899999954 9998763
No 7
>d1wpda_ g.3.7.2 (A:) Maurotoxin {Scorpion (Scorpio maurus) [TaxId: 53956]}
Probab=7.11 E-value=71 Score=19.25 Aligned_cols=17 Identities=53% Similarity=1.140 Sum_probs=13.1
Q ss_pred HHHHHHhhh-cCCCCCCc
Q 019038 32 KGCVEQCEK-TGCVGDKC 48 (347)
Q Consensus 32 ~~Cv~~C~~-~~C~~~~~ 48 (347)
+||-..|.+ ++|+.+++
T Consensus 7 kdcy~pcrkqtgcp~~kc 24 (34)
T d1wpda_ 7 KDCYAPCRKQTGCPYGKC 24 (34)
T ss_dssp SSCHHHHHHHHCSSCBCC
T ss_pred ccccchhhhccCCCcchh
Confidence 478888984 59998764
No 8
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=6.48 E-value=74 Score=20.07 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=8.3
Q ss_pred cCCCCCCCCc
Q 019038 77 QWDCSSDCRY 86 (347)
Q Consensus 77 ~W~C~sdC~Y 86 (347)
+-.|.|+|+|
T Consensus 32 g~gCqs~C~y 41 (41)
T d1ulka2 32 GEGCQSQCSY 41 (41)
T ss_dssp STTCCBCTTT
T ss_pred ccccccCCCC
Confidence 5679999988
No 9
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.96 E-value=52 Score=24.97 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=13.5
Q ss_pred CccccccCCccccccccch
Q 019038 103 PVKYHGKWPFRRVYGIQEP 121 (347)
Q Consensus 103 v~QFhGKWPF~Rv~GiQEp 121 (347)
|+||-|||-+.+-=.+-|+
T Consensus 1 p~~f~Gtwkl~~sENfd~f 19 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDY 19 (134)
T ss_dssp CCSCCEEEEEEEEECHHHH
T ss_pred CCCcCEEEEEEeccCHHHH
Confidence 6899999998884333333
No 10
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.57 E-value=77 Score=24.07 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=22.7
Q ss_pred CccccccC---CccccccccchHHHHHHHhh
Q 019038 103 PVKYHGKW---PFRRVYGIQEPVAVALSALN 130 (347)
Q Consensus 103 v~QFhGKW---PF~Rv~GiQEp~Sv~FSllN 130 (347)
..++.|+- -+.++.-++||++++++++|
T Consensus 131 ~~~~~g~~~~i~I~~v~V~pQg~ga~~~~l~ 161 (164)
T d2fsja2 131 VTGPEGEVRQFNITRLIMRPQGVGAALYLLN 161 (164)
T ss_dssp EECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred EEeeCCeEEEEEEeEEEEecCCHHHHHHHHH
Confidence 45567775 56788999999999999887
Done!