Query 019039
Match_columns 347
No_of_seqs 152 out of 1296
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 3.5E-78 7.6E-83 563.9 32.9 342 3-347 4-346 (375)
2 PTZ00466 actin-like protein; P 100.0 6.6E-77 1.4E-81 555.8 33.9 340 3-347 11-351 (380)
3 PTZ00281 actin; Provisional 100.0 8.6E-77 1.9E-81 556.0 32.6 342 3-347 5-347 (376)
4 KOG0677 Actin-related protein 100.0 9.1E-78 2E-82 503.2 21.6 347 1-347 1-358 (389)
5 KOG0676 Actin and related prot 100.0 1.1E-76 2.5E-81 536.4 24.7 337 3-347 6-343 (372)
6 PTZ00004 actin-2; Provisional 100.0 2.7E-74 5.9E-79 539.9 33.2 342 3-347 5-349 (378)
7 KOG0679 Actin-related protein 100.0 1.4E-72 3.1E-77 495.6 25.4 339 3-347 10-396 (426)
8 PTZ00280 Actin-related protein 100.0 9.9E-71 2.1E-75 522.1 33.0 346 1-347 1-381 (414)
9 PF00022 Actin: Actin; InterP 100.0 1E-68 2.2E-73 507.4 25.2 338 2-347 2-364 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 5.2E-67 1.1E-71 492.0 33.3 339 5-347 2-344 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.7E-65 3.6E-70 481.3 32.8 340 6-347 1-344 (371)
12 COG5277 Actin and related prot 100.0 4E-61 8.6E-66 450.9 28.6 340 5-347 7-415 (444)
13 KOG0680 Actin-related protein 100.0 3.3E-59 7.3E-64 401.9 24.6 332 2-346 1-369 (400)
14 KOG0681 Actin-related protein 100.0 4.3E-48 9.3E-53 353.3 22.7 337 2-346 21-610 (645)
15 KOG0678 Actin-related protein 100.0 9.6E-49 2.1E-53 337.8 15.3 346 1-347 1-381 (415)
16 PRK13930 rod shape-determining 100.0 2.5E-37 5.5E-42 286.6 20.8 285 6-319 10-305 (335)
17 PRK13927 rod shape-determining 100.0 7.8E-37 1.7E-41 283.1 18.0 284 5-319 6-301 (334)
18 PRK13929 rod-share determining 100.0 1.2E-34 2.6E-39 267.6 21.2 287 1-319 1-303 (335)
19 TIGR00904 mreB cell shape dete 100.0 1E-34 2.2E-39 268.6 20.3 289 6-319 4-304 (333)
20 KOG0797 Actin-related protein 100.0 1.6E-31 3.5E-36 243.2 20.0 278 64-347 177-586 (618)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.9E-30 8.5E-35 232.9 21.5 293 5-334 2-308 (326)
22 PRK13928 rod shape-determining 100.0 6.6E-30 1.4E-34 236.6 20.0 286 5-320 4-301 (336)
23 COG1077 MreB Actin-like ATPase 99.9 7E-25 1.5E-29 191.8 15.7 289 4-319 6-308 (342)
24 TIGR02529 EutJ ethanolamine ut 99.8 1.6E-18 3.5E-23 152.3 15.8 208 70-345 29-237 (239)
25 PRK15080 ethanolamine utilizat 99.7 6.4E-16 1.4E-20 138.2 21.2 220 5-320 25-247 (267)
26 CHL00094 dnaK heat shock prote 99.7 4.9E-15 1.1E-19 147.6 19.3 215 80-320 113-354 (621)
27 PLN03184 chloroplast Hsp70; Pr 99.6 8.6E-15 1.9E-19 146.6 19.6 216 79-320 149-391 (673)
28 PRK01433 hscA chaperone protei 99.6 1.2E-14 2.6E-19 143.3 19.0 183 101-319 141-333 (595)
29 TIGR01991 HscA Fe-S protein as 99.6 1.6E-14 3.5E-19 143.2 19.8 191 101-320 129-338 (599)
30 PRK13411 molecular chaperone D 99.6 7E-15 1.5E-19 147.0 16.8 195 101-319 133-352 (653)
31 PTZ00009 heat shock 70 kDa pro 99.6 8.7E-15 1.9E-19 146.4 17.5 191 101-319 140-357 (653)
32 PTZ00186 heat shock 70 kDa pre 99.6 1E-14 2.2E-19 145.1 17.6 196 101-320 160-379 (657)
33 PTZ00400 DnaK-type molecular c 99.6 8.8E-15 1.9E-19 146.4 16.9 196 101-320 174-393 (663)
34 PRK00290 dnaK molecular chaper 99.6 1.2E-14 2.6E-19 145.2 17.4 194 101-320 133-352 (627)
35 PRK05183 hscA chaperone protei 99.6 4.7E-14 1E-18 140.2 18.8 190 101-320 149-354 (616)
36 TIGR02350 prok_dnaK chaperone 99.6 2.1E-14 4.6E-19 142.9 16.2 194 102-319 131-349 (595)
37 PRK13410 molecular chaperone D 99.6 4.4E-14 9.5E-19 141.1 17.2 192 102-319 136-353 (668)
38 PRK11678 putative chaperone; P 99.5 3.4E-13 7.3E-18 128.7 14.8 89 101-191 149-260 (450)
39 TIGR01174 ftsA cell division p 99.4 7.8E-12 1.7E-16 117.5 18.4 175 113-320 156-340 (371)
40 PRK09472 ftsA cell division pr 99.4 1.8E-11 3.8E-16 116.7 19.7 178 113-320 164-354 (420)
41 PF00012 HSP70: Hsp70 protein; 99.4 3.5E-12 7.5E-17 127.7 12.0 193 102-319 136-353 (602)
42 COG0443 DnaK Molecular chapero 99.4 1.6E-11 3.4E-16 120.7 16.2 185 4-197 5-223 (579)
43 COG0849 ftsA Cell division ATP 99.3 1.4E-10 3E-15 108.5 16.1 174 115-320 165-346 (418)
44 TIGR01175 pilM type IV pilus a 99.1 3.2E-08 6.9E-13 92.4 21.4 157 112-320 140-308 (348)
45 PRK13917 plasmid segregation p 99.0 2.3E-08 5E-13 92.8 18.0 188 5-197 3-233 (344)
46 COG4820 EutJ Ethanolamine util 98.9 3E-10 6.4E-15 93.4 2.3 186 71-319 62-251 (277)
47 TIGR03739 PRTRC_D PRTRC system 98.9 4.4E-08 9.6E-13 90.2 16.3 185 9-197 2-215 (320)
48 PF11104 PilM_2: Type IV pilus 98.9 7.2E-08 1.6E-12 89.6 17.0 187 79-320 86-300 (340)
49 KOG0104 Molecular chaperones G 98.9 5.8E-08 1.3E-12 94.1 14.7 95 101-196 158-275 (902)
50 KOG0101 Molecular chaperones H 98.8 9E-08 2E-12 92.7 14.5 192 101-319 143-359 (620)
51 KOG0100 Molecular chaperones G 98.8 1.3E-07 2.9E-12 85.7 13.7 188 102-319 173-387 (663)
52 COG4972 PilM Tfp pilus assembl 98.4 4E-05 8.7E-10 68.4 18.4 119 151-320 195-313 (354)
53 PF06406 StbA: StbA protein; 98.3 9.1E-06 2E-10 74.7 11.9 184 6-197 2-213 (318)
54 KOG0103 Molecular chaperones H 98.3 3.5E-05 7.6E-10 74.8 16.0 96 100-197 136-247 (727)
55 KOG0102 Molecular chaperones m 98.1 0.00011 2.4E-09 69.6 15.3 198 102-323 161-381 (640)
56 PRK10719 eutA reactivating fac 97.8 0.00017 3.8E-09 68.1 9.6 118 68-189 53-184 (475)
57 TIGR00241 CoA_E_activ CoA-subs 97.5 0.01 2.2E-07 52.6 17.3 117 79-216 33-150 (248)
58 PF06277 EutA: Ethanolamine ut 97.3 0.0039 8.5E-08 59.1 12.7 129 69-201 51-204 (473)
59 TIGR03286 methan_mark_15 putat 96.4 0.056 1.2E-06 50.7 12.2 27 293-319 354-380 (404)
60 TIGR03123 one_C_unchar_1 proba 95.9 0.048 1E-06 49.8 9.0 29 146-174 125-153 (318)
61 PF08841 DDR: Diol dehydratase 95.9 0.032 6.9E-07 49.2 7.3 94 113-216 93-191 (332)
62 TIGR03192 benz_CoA_bzdQ benzoy 95.7 0.1 2.2E-06 47.0 9.7 28 293-320 238-265 (293)
63 TIGR03706 exo_poly_only exopol 95.5 0.05 1.1E-06 49.6 7.5 86 102-191 73-165 (300)
64 COG1548 Predicted transcriptio 95.5 0.052 1.1E-06 47.2 7.0 23 148-170 129-151 (330)
65 TIGR02261 benz_CoA_red_D benzo 95.4 0.24 5.2E-06 43.9 10.9 47 296-345 213-259 (262)
66 PRK11031 guanosine pentaphosph 95.0 0.15 3.3E-06 49.9 9.4 76 113-190 89-171 (496)
67 PRK10854 exopolyphosphatase; P 93.8 0.17 3.8E-06 49.7 7.0 75 113-189 94-175 (513)
68 PRK03011 butyrate kinase; Prov 93.6 1.9 4.1E-05 40.4 13.1 27 148-175 175-201 (358)
69 COG4819 EutA Ethanolamine util 93.3 0.8 1.7E-05 41.6 9.5 115 69-186 53-180 (473)
70 PF01869 BcrAD_BadFG: BadF/Bad 92.6 0.41 9E-06 42.8 7.1 46 298-346 224-269 (271)
71 COG0248 GppA Exopolyphosphatas 92.1 0.47 1E-05 46.2 7.0 71 118-190 91-168 (492)
72 PF14450 FtsA: Cell division p 91.6 1 2.2E-05 34.9 7.3 57 152-219 2-69 (120)
73 PF01968 Hydantoinase_A: Hydan 91.3 0.21 4.6E-06 45.3 3.6 35 140-174 67-102 (290)
74 COG1521 Pantothenate kinase ty 90.4 1.6 3.4E-05 38.6 8.0 18 6-23 2-19 (251)
75 PRK13321 pantothenate kinase; 89.2 3.1 6.8E-05 36.9 9.2 19 6-24 2-20 (256)
76 PF02541 Ppx-GppA: Ppx/GppA ph 89.0 0.94 2E-05 40.9 5.9 73 115-190 71-151 (285)
77 TIGR02707 butyr_kinase butyrat 89.0 20 0.00043 33.5 15.6 25 150-175 175-199 (351)
78 PF07318 DUF1464: Protein of u 88.9 2.5 5.4E-05 38.9 8.3 26 298-323 264-289 (343)
79 PRK13324 pantothenate kinase; 88.9 5.5 0.00012 35.5 10.4 18 6-23 2-19 (258)
80 TIGR00671 baf pantothenate kin 87.1 5.4 0.00012 35.1 9.3 18 7-24 2-19 (243)
81 PF03309 Pan_kinase: Type III 86.6 1.4 3.1E-05 37.7 5.2 18 7-24 2-19 (206)
82 PRK13318 pantothenate kinase; 85.9 5.2 0.00011 35.6 8.6 18 6-23 2-19 (258)
83 COG1924 Activator of 2-hydroxy 82.8 18 0.00038 33.8 10.5 23 298-320 346-368 (396)
84 PRK13326 pantothenate kinase; 82.5 11 0.00024 33.6 9.1 20 5-24 7-26 (262)
85 PRK13320 pantothenate kinase; 79.0 37 0.00081 29.9 11.2 18 6-23 4-21 (244)
86 PRK09557 fructokinase; Reviewe 73.3 71 0.0015 28.8 17.3 53 120-174 88-147 (301)
87 TIGR00744 ROK_glcA_fam ROK fam 72.2 31 0.00068 31.4 9.4 53 120-174 89-148 (318)
88 PRK13317 pantothenate kinase; 71.4 36 0.00077 30.7 9.2 27 293-319 221-248 (277)
89 TIGR02259 benz_CoA_red_A benzo 70.9 3 6.5E-05 39.2 2.2 50 294-346 381-430 (432)
90 COG2441 Predicted butyrate kin 69.5 6.4 0.00014 35.0 3.8 48 149-196 163-214 (374)
91 PF03702 UPF0075: Uncharacteri 64.0 3.7 8.1E-05 38.4 1.4 25 296-320 286-310 (364)
92 PF08735 DUF1786: Putative pyr 63.6 24 0.00052 31.2 6.2 60 134-194 145-213 (254)
93 KOG2708 Predicted metalloprote 61.3 25 0.00053 30.5 5.7 112 84-198 54-172 (336)
94 KOG1794 N-Acetylglucosamine ki 61.1 60 0.0013 29.4 8.2 91 81-172 47-143 (336)
95 TIGR01319 glmL_fam conserved h 61.0 10 0.00022 36.5 3.8 72 101-172 174-272 (463)
96 COG0145 HyuA N-methylhydantoin 59.4 10 0.00022 38.7 3.6 33 142-174 269-303 (674)
97 TIGR03367 queuosine_QueD queuo 59.1 13 0.00028 27.2 3.3 50 73-129 42-91 (92)
98 PRK09585 anmK anhydro-N-acetyl 57.1 3.3 7.1E-05 38.8 -0.2 23 297-319 289-311 (365)
99 smart00842 FtsA Cell division 56.3 44 0.00095 27.9 6.6 36 71-109 36-75 (187)
100 cd08627 PI-PLCc_gamma1 Catalyt 54.9 21 0.00045 31.0 4.3 45 81-131 74-118 (229)
101 cd08630 PI-PLCc_delta3 Catalyt 52.0 24 0.00051 31.3 4.3 45 81-131 74-118 (258)
102 cd08626 PI-PLCc_beta4 Catalyti 51.3 24 0.00053 31.2 4.2 45 81-131 76-120 (257)
103 cd08632 PI-PLCc_eta1 Catalytic 51.2 25 0.00055 31.0 4.3 45 81-131 74-118 (253)
104 cd08631 PI-PLCc_delta4 Catalyt 50.6 25 0.00054 31.2 4.2 44 81-130 74-117 (258)
105 cd08595 PI-PLCc_zeta Catalytic 50.6 25 0.00055 31.1 4.2 44 81-130 74-117 (257)
106 cd08596 PI-PLCc_epsilon Cataly 50.5 26 0.00055 31.0 4.3 44 81-130 74-117 (254)
107 cd08594 PI-PLCc_eta Catalytic 50.5 26 0.00057 30.4 4.2 44 81-130 74-117 (227)
108 cd08629 PI-PLCc_delta1 Catalyt 50.1 26 0.00056 31.1 4.2 44 81-130 74-117 (258)
109 cd08593 PI-PLCc_delta Catalyti 49.1 27 0.00058 31.0 4.2 44 81-130 74-117 (257)
110 cd08633 PI-PLCc_eta2 Catalytic 48.7 29 0.00062 30.7 4.3 45 81-131 74-118 (254)
111 cd08591 PI-PLCc_beta Catalytic 48.6 28 0.00061 30.8 4.2 45 81-131 76-120 (257)
112 cd08592 PI-PLCc_gamma Catalyti 48.3 29 0.00063 30.2 4.2 44 81-130 74-117 (229)
113 cd08598 PI-PLC1c_yeast Catalyt 48.3 29 0.00062 30.3 4.2 44 81-130 74-117 (231)
114 PF13941 MutL: MutL protein 46.8 24 0.00051 34.2 3.8 76 100-175 177-274 (457)
115 PRK14101 bifunctional glucokin 46.1 39 0.00084 34.4 5.5 24 122-145 99-122 (638)
116 cd08558 PI-PLCc_eukaryota Cata 45.2 34 0.00075 29.7 4.2 45 81-131 74-118 (226)
117 cd08597 PI-PLCc_PRIP_metazoa C 44.0 35 0.00075 30.4 4.1 44 81-130 74-117 (260)
118 cd08628 PI-PLCc_gamma2 Catalyt 40.3 45 0.00099 29.5 4.2 44 81-130 74-117 (254)
119 cd08623 PI-PLCc_beta1 Catalyti 40.1 45 0.00098 29.6 4.2 45 81-131 76-121 (258)
120 cd08624 PI-PLCc_beta2 Catalyti 38.9 48 0.001 29.5 4.1 44 81-130 76-120 (261)
121 COG4012 Uncharacterized protei 35.4 1.7E+02 0.0038 26.1 6.9 24 149-172 227-250 (342)
122 cd08625 PI-PLCc_beta3 Catalyti 35.0 54 0.0012 29.1 3.9 44 81-130 76-120 (258)
123 cd08599 PI-PLCc_plant Catalyti 34.7 69 0.0015 27.9 4.4 44 81-130 74-117 (228)
124 COG1070 XylB Sugar (pentulose 33.1 36 0.00079 33.5 2.8 24 1-24 1-24 (502)
125 TIGR00039 6PTHBS 6-pyruvoyl te 32.4 64 0.0014 25.0 3.6 52 73-129 44-95 (124)
126 PF14824 Sirohm_synth_M: Siroh 32.3 19 0.00042 20.4 0.4 22 298-321 8-29 (30)
127 KOG2960 Protein involved in th 31.5 32 0.00068 29.6 1.8 54 289-346 70-123 (328)
128 PLN02952 phosphoinositide phos 28.7 80 0.0017 31.8 4.3 44 81-130 196-239 (599)
129 PLN02230 phosphoinositide phos 28.2 82 0.0018 31.7 4.3 44 81-130 187-230 (598)
130 PLN02222 phosphoinositide phos 28.0 79 0.0017 31.7 4.1 44 81-130 176-219 (581)
131 PF13941 MutL: MutL protein 27.9 45 0.00099 32.3 2.4 24 6-29 2-27 (457)
132 smart00732 YqgFc Likely ribonu 27.1 1.8E+02 0.0038 20.9 5.1 45 151-195 3-48 (99)
133 PF00370 FGGY_N: FGGY family o 26.9 51 0.0011 28.7 2.4 18 6-23 2-19 (245)
134 PRK13310 N-acetyl-D-glucosamin 26.8 4.7E+02 0.01 23.4 10.7 128 6-175 2-148 (303)
135 PRK00976 hypothetical protein; 26.2 1E+02 0.0022 28.4 4.3 33 140-173 140-172 (326)
136 PLN02228 Phosphoinositide phos 26.1 94 0.002 31.1 4.3 45 81-131 179-223 (567)
137 PLN02223 phosphoinositide phos 25.6 96 0.0021 30.7 4.2 45 81-130 179-223 (537)
138 PRK00047 glpK glycerol kinase; 25.4 64 0.0014 31.6 3.1 25 295-319 404-428 (498)
139 TIGR03590 PseG pseudaminic aci 25.2 1.2E+02 0.0026 27.2 4.5 34 296-329 171-204 (279)
140 PRK13333 pantothenate kinase; 24.7 86 0.0019 26.9 3.3 29 138-169 75-103 (206)
141 PF01968 Hydantoinase_A: Hydan 23.3 46 0.001 30.1 1.5 26 4-29 77-102 (290)
142 KOG0169 Phosphoinositide-speci 23.1 1.1E+02 0.0024 31.3 4.2 44 81-130 361-404 (746)
143 KOG1386 Nucleoside phosphatase 22.8 2.9E+02 0.0063 27.0 6.6 137 7-164 12-177 (501)
144 PRK13331 pantothenate kinase; 22.0 88 0.0019 27.7 2.9 21 4-24 7-27 (251)
145 PRK09417 mogA molybdenum cofac 21.0 87 0.0019 26.5 2.6 21 298-318 70-107 (193)
146 PRK13311 N-acetyl-D-glucosamin 20.8 5.7E+02 0.012 22.3 10.8 55 119-175 87-148 (256)
147 PF02685 Glucokinase: Glucokin 20.3 62 0.0014 29.7 1.7 21 126-146 88-108 (316)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.5e-78 Score=563.92 Aligned_cols=342 Identities=36% Similarity=0.657 Sum_probs=311.1
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
..++||||+||.++|+|||||+.|++++||.+|+++...... ....+++++|+++...++.+.+++|+++|.|.|||.
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~ 81 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIF--STFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDD 81 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccc--cccccceEEChhhhccccCcEEcccCcCCEEcCHHH
Confidence 356999999999999999999999999999999887542111 112347889999888788899999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
+|.+|+|+|.+.|+++++++|++++|++++++..|++++|++||.|++|++++.++++|++|++|++||||||+|++.|+
T Consensus 82 ~e~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~ 161 (375)
T PTZ00452 82 IEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTH 161 (375)
T ss_pred HHHHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcce
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
|+||+||+++++++.++++||+++|++|.++|.++++.+....+.+.++++||++||++.|+.++.............|+
T Consensus 162 v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~ 241 (375)
T PTZ00452 162 CVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK 241 (375)
T ss_pred EEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE
Confidence 99999999999999999999999999999999998877766667889999999999999998777553333344567899
Q ss_pred CCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcC
Q 019039 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFAS 322 (347)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 322 (347)
||||+.+.++.|||.+||+||+|++.+.+..||+++|.++|.+||+|+|+.|++||||+||+|++|||.+||++||+++.
T Consensus 242 LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~ 321 (375)
T PTZ00452 242 LPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV 321 (375)
T ss_pred CCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeeeeecCCccccccccccccC
Q 019039 323 HD-IPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 323 ~~-~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|. .++++.. ...+.|++|+|||++
T Consensus 322 p~~~~v~v~~-~~~r~~~aW~GgSil 346 (375)
T PTZ00452 322 PSQLKIQVAA-PPDRRFSAWIGGSIQ 346 (375)
T ss_pred CCCceeEEec-CCCcceeEEECchhh
Confidence 84 5666543 468999999999986
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=6.6e-77 Score=555.79 Aligned_cols=340 Identities=41% Similarity=0.751 Sum_probs=309.2
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
+..+||||+||+++|+|||||+.|++++||.+|+++...... +...+++++|+++...++.+.+++|+++|.|.|||.
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~--~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~ 88 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMA--GAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWND 88 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccc--cCCCCCeEECchhhhhCcCceeCccccCCeECCHHH
Confidence 456899999999999999999999999999999987543211 122347899999887788888999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
+|.+|+|+| +.|+++++++|++++|++++++..|++++|++||.|++|++++.++++||+|++|.+||+|||+|++.|+
T Consensus 89 ~e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~ 167 (380)
T PTZ00466 89 MENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCH 167 (380)
T ss_pred HHHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceE
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
|+||+||+++.+++.++++||++++++|.++|.+++..+....+.+.++++||++||++.|+.++.... ........|+
T Consensus 168 v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~-~~~~~~~~y~ 246 (380)
T PTZ00466 168 CVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSS-EKALTTLPYI 246 (380)
T ss_pred EEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhc-cccccceeEE
Confidence 999999999999999999999999999999999988777767788999999999999999987765432 2233457899
Q ss_pred CCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcC
Q 019039 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFAS 322 (347)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 322 (347)
||||+.+.++.|||.+||.||+|+..+.+..+|+++|.++|.+||.|+|+.|++||+|+||+|++|||.+||++||+++.
T Consensus 247 LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~ 326 (380)
T PTZ00466 247 LPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFA 326 (380)
T ss_pred CCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeeeeecCCccccccccccccC
Q 019039 323 HD-IPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 323 ~~-~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|. .++++. ....+.|++|+|||++
T Consensus 327 p~~~~v~v~-~~~~r~~~aW~GgSil 351 (380)
T PTZ00466 327 PKDITIRIS-APPERKFSTFIGGSIL 351 (380)
T ss_pred CCCceEEEe-cCCCCceeEEECchhh
Confidence 84 456644 4568899999999985
No 3
>PTZ00281 actin; Provisional
Probab=100.00 E-value=8.6e-77 Score=556.05 Aligned_cols=342 Identities=44% Similarity=0.818 Sum_probs=311.8
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
+.++||||+||+++|+|||||+.|++++||.+++++...... +.+.+++++|+++...+..+.+++|+++|.|.|||.
T Consensus 5 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~ 82 (376)
T PTZ00281 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMV--GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 82 (376)
T ss_pred cCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCccccc--CcccCCeEECchhhccccCcEEeccCcCCEEcCHHH
Confidence 456999999999999999999999999999999876543211 123457889999877778889999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
++.+|+|+|.+.|+++++++|++++||+++++..|++++|++||.|++|++++.++++|++|++|++||||||+|++.|+
T Consensus 83 ~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (376)
T PTZ00281 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSH 162 (376)
T ss_pred HHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
|+||+||+++.++++++++||++++++|.++|.++++.+....+.+.++++||++|||+.++..+.+...........|.
T Consensus 163 v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~ 242 (376)
T PTZ00281 163 TVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYE 242 (376)
T ss_pred EEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEE
Confidence 99999999999999999999999999999999998877766677889999999999999988777654433445567899
Q ss_pred CCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcC
Q 019039 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFAS 322 (347)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 322 (347)
||||+.+.++.|||.+||.||+|+..+.+..+|+++|.++|.+||.|+|+.|++||||+||+|++|||.+||++||+++.
T Consensus 243 LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~ 322 (376)
T PTZ00281 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALA 322 (376)
T ss_pred CCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCeeeeecCCccccccccccccC
Q 019039 323 HD-IPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 323 ~~-~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|. .++++.. ...+.|++|+|||++
T Consensus 323 p~~~~v~v~~-~~~r~~~aW~Ggsil 347 (376)
T PTZ00281 323 PSTMKIKIIA-PPERKYSVWIGGSIL 347 (376)
T ss_pred CCCcceEEec-CCCCceeEEECcccc
Confidence 85 4666554 347899999999985
No 4
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=9.1e-78 Score=503.24 Aligned_cols=347 Identities=64% Similarity=1.088 Sum_probs=331.9
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecH
Q 019039 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNW 80 (347)
Q Consensus 1 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~ 80 (347)
|+..++||+|+||.+.|+||||+..|.++||+.+|+|.-+...+.++...+++.+|+++.+.|+.+++.||+++|.+.||
T Consensus 1 Md~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnw 80 (389)
T KOG0677|consen 1 MDSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNW 80 (389)
T ss_pred CCCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccCh
Confidence 88899999999999999999999999999999999998888777777778899999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCc
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGV 160 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~ 160 (347)
|+++.+|+|.|.++|+++|.+..+++|||+++|.+.|++++|++||++++.++|+.-++++++||.|..||+|||.|.+.
T Consensus 81 ddM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGV 160 (389)
T KOG0677|consen 81 DDMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGV 160 (389)
T ss_pred HHHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceee
Q 019039 161 THVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240 (347)
Q Consensus 161 t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (347)
|+|+||++|+.++|-.++++++|+++|+||.++|..+|+.+++..+.+.++++||++||++.|.+.+.+.+.+++....+
T Consensus 161 THi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~ 240 (389)
T KOG0677|consen 161 THIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVES 240 (389)
T ss_pred eEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 241 YTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 241 ~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
|+||||+.|.++.|||.+||.||+|.+++.+.+++++++..+|+..++|.|..++++|+|+||+++.||+..||++||++
T Consensus 241 YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkq 320 (389)
T KOG0677|consen 241 YTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQ 320 (389)
T ss_pred eecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC----------CCeee-eecCCccccccccccccC
Q 019039 321 ASHD----------IPLCF-LRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 321 ~~~~----------~~~~~-~~~~~~~~~s~w~G~~~~ 347 (347)
++-+ -++|+ .+.++.+....|+|+-||
T Consensus 321 lyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVL 358 (389)
T KOG0677|consen 321 LYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVL 358 (389)
T ss_pred HHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHH
Confidence 8621 12344 467788899999998764
No 5
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.1e-76 Score=536.35 Aligned_cols=337 Identities=47% Similarity=0.850 Sum_probs=311.2
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
..++||+|+|+..+|+|||||+.|+.++||.++++++..... +...++.++|+++...+ .+.||+++|.|.|||+
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~--~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMA--GMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCceecceeccccccccccc--cccccccccchhhhccc---cccCccccccccchHH
Confidence 357999999999999999999999999999999877654332 45567889999988777 7799999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
++.+|.|+|++.|+++|+++||++|||+++|+..||+++|++||.|++|++++..++++ |++|++||+|||+|++.|+
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999776666 9999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
++||+||+++++++.++++||+++|+++...|.++|+.+....+.++++++||++||++.|++++.......+....+|.
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999888888889999999999999999999999877444566677799
Q ss_pred CCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcC
Q 019039 243 LPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFAS 322 (347)
Q Consensus 243 lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~ 322 (347)
+|||+.+.++++||.+||.||+|+..+.+..+|++++.++|.+||+|+|+.|++||+|+||++++|||.+||++||..+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCeeeeecCCccccccccccccC
Q 019039 323 H-DIPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 323 ~-~~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
| ..++++. .++++.||+|+||||+
T Consensus 319 P~~~~ikv~-~pp~r~~s~WlGgSIl 343 (372)
T KOG0676|consen 319 PSTIKIKVI-APPERKYSAWLGGSIL 343 (372)
T ss_pred CCCcceEEe-cCcccccceecCceeE
Confidence 8 4565543 4467779999999986
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=2.7e-74 Score=539.89 Aligned_cols=342 Identities=46% Similarity=0.816 Sum_probs=309.1
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWED 82 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 82 (347)
+.++||||+||.++|+||||++.|++++||++++++.+.... +...+.+++|+++...++.+.+++|+++|+|.|||.
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~ 82 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMV--GMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDD 82 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEeccccccc--CcCCCceEECchhhcccccceEcccCcCCEEcCHHH
Confidence 667999999999999999999999999999999877542211 122347889998877677788999999999999999
Q ss_pred HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceE
Q 019039 83 MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTH 162 (347)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~ 162 (347)
++.+|+|+|.+.|++++.++||+++||+++++..|++++|++||.|+++++++.++++||+|++|.+||+|||+|++.|+
T Consensus 83 ~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~ 162 (378)
T PTZ00004 83 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 162 (378)
T ss_pred HHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccC-ccceeee
Q 019039 163 VVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET-TILVKNY 241 (347)
Q Consensus 163 v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~-~~~~~~~ 241 (347)
|+||+||+++.+++.++++||++++++|.++|.+++..+....+.+.++++||++||++.|+.++.+..... ......|
T Consensus 163 v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y 242 (378)
T PTZ00004 163 TVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESY 242 (378)
T ss_pred EEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEE
Confidence 999999999999999999999999999999999988877666678899999999999999988775432222 2236789
Q ss_pred eCCCCceEEeCCccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 242 TLPDGRVIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 242 ~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
.||||+.+.++.+||.+||.||+|+..+.+ ..+|+++|.++|.+||+|+|+.|++||+|+||+|++|||.+||++||++
T Consensus 243 ~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~ 322 (378)
T PTZ00004 243 ELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTT 322 (378)
T ss_pred ECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHH
Confidence 999999999999999999999999998888 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CeeeeecCCccccccccccccC
Q 019039 321 ASHDI-PLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 321 ~~~~~-~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
+.|.. ++++. ....+.|++|+|||++
T Consensus 323 ~~p~~~~~~v~-~~~~~~~~aW~Ggsil 349 (378)
T PTZ00004 323 LAPSTMKIKVV-APPERKYSVWIGGSIL 349 (378)
T ss_pred hCCCCccEEEe-cCCCCceeEEECcccc
Confidence 99864 55543 3467999999999985
No 7
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.4e-72 Score=495.62 Aligned_cols=339 Identities=29% Similarity=0.499 Sum_probs=293.2
Q ss_pred CCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEecccccc-ccCCceeeccccCCeeecHH
Q 019039 3 NRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALD-LRHQLDVSYPVNNGIVQNWE 81 (347)
Q Consensus 3 ~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~p~~~g~i~~~~ 81 (347)
|.++||||+||+++|+||||++.|++++||.+|........ ....+.+++++++.. .|+.+++..|+++|++.|||
T Consensus 10 Ev~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d---~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD 86 (426)
T KOG0679|consen 10 EVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD---AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWD 86 (426)
T ss_pred ccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc---cccccceEeechhccCCCCCCeeccchhcCCcccHH
Confidence 67899999999999999999999999999999964222111 122345788887654 67889999999999999999
Q ss_pred HHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCce
Q 019039 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (347)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (347)
.++.+|+|.|.++|+.+|.+||++++||++++++.|++++|++||+++||++|++.+++|++||.|+.|+||||+|+++|
T Consensus 87 ~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~ 166 (426)
T KOG0679|consen 87 LFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHT 166 (426)
T ss_pred HHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCC---------------------------------hHH
Q 019039 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTA---------------------------------DFE 208 (347)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~---------------------------------~~~ 208 (347)
+|+||+||++++.++++.++||++++..++++|...++++.... ...
T Consensus 167 svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~ 246 (426)
T KOG0679|consen 167 SVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQR 246 (426)
T ss_pred eeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876653211 122
Q ss_pred HHHHHHHhccccccchHHHHhhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCC------------CCCCCHH
Q 019039 209 TVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELID------------VEGDGMA 276 (347)
Q Consensus 209 ~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~------------~~~~~l~ 276 (347)
.+++.|+.++.++-..-.+. ......+++|++|||....++.+||++||.||+|+... ....|++
T Consensus 247 v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~ 323 (426)
T KOG0679|consen 247 VYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLP 323 (426)
T ss_pred HHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCch
Confidence 44455555555542222121 11336788999999999999999999999999998652 2457899
Q ss_pred HHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeec--CCccccccccccccC
Q 019039 277 DMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRN--LGLHVYSLFLSVFVL 347 (347)
Q Consensus 277 ~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~--~~~~~~s~w~G~~~~ 347 (347)
+++..||..||+|+|..|+.|||+|||+|+|+||.+||++||..++|..++++..+ .-+++|++|+|||||
T Consensus 324 ~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSIL 396 (426)
T KOG0679|consen 324 HLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSIL 396 (426)
T ss_pred HHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999888654 467999999999986
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=9.9e-71 Score=522.09 Aligned_cols=346 Identities=37% Similarity=0.629 Sum_probs=302.2
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhh-hhhccCCceEeccccccccCCceeeccccCCeeec
Q 019039 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEES-LMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQN 79 (347)
Q Consensus 1 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~ 79 (347)
|+..++||||+||.++||||||++.|++++||++++++...... .......++++|+++...+..+.+++|+++|.|.|
T Consensus 1 ~~~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~d 80 (414)
T PTZ00280 1 ASTLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVED 80 (414)
T ss_pred CCCCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCC
Confidence 66778999999999999999999999999999999876532100 00111236889999888777889999999999999
Q ss_pred HHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhC----------CCc
Q 019039 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ----------GLL 149 (347)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~----------g~~ 149 (347)
||.++.+|+|+|.+.|++++.++|++++||+++++..|++++|++||.|++|++++..+++||+|++ |.+
T Consensus 81 wd~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 9999999999998999999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHh
Q 019039 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQ 229 (347)
Q Consensus 150 tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~ 229 (347)
+|+|||+|++.|+|+||+||+++.++++++++||++++++|.++|.+++..+....+.+.++++||++||++.|+.++.+
T Consensus 161 tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~ 240 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFE 240 (414)
T ss_pred eEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999887776556688999999999999998877654
Q ss_pred hccc-CccceeeeeCCC---Cc--eEEeCCccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHhhhcceEEec
Q 019039 230 LGLE-TTILVKNYTLPD---GR--VIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIVLSG 302 (347)
Q Consensus 230 ~~~~-~~~~~~~~~lpd---g~--~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~G 302 (347)
.... .......|.+|| |+ .+.++.+||.+||.||+|+.++.+ ..+|+++|.++|++||+|+|+.|++||+|+|
T Consensus 241 ~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~G 320 (414)
T PTZ00280 241 KYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSG 320 (414)
T ss_pred HhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeC
Confidence 3221 122345688887 33 799999999999999999987655 4599999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHhhcCC-----------------CCCeeeeecCCccccccccccccC
Q 019039 303 GSTMYPGLPSRYYVELFFASH-----------------DIPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 303 G~s~i~G~~erl~~eL~~~~~-----------------~~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|+|++|||.+||++||+++.| ..++++. ..+.+.|++|+|||++
T Consensus 321 G~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~W~GgSil 381 (414)
T PTZ00280 321 GSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVV-SHPRQRYAVWYGGSML 381 (414)
T ss_pred CcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEe-cCCccceeEEEChhhc
Confidence 999999999999999999864 2344443 3346889999999985
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1e-68 Score=507.38 Aligned_cols=338 Identities=39% Similarity=0.697 Sum_probs=289.5
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHH
Q 019039 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWE 81 (347)
Q Consensus 2 ~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 81 (347)
++.++||||+|+.+||+|||||+.|+.++||.++++...... .++++|++.........+.+|+++|.+.||+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~ 74 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSS-------NDYYVGDEALSPRSNLELRSPIENGVIVDWD 74 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSS-------SSCEETHHHHHTGTGEEEEESEETTEESSHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccc-------eeEEeecccccchhheeeeeecccccccccc
Confidence 578899999999999999999999999999999987654321 2678898865567778899999999999999
Q ss_pred HHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCce
Q 019039 82 DMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (347)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (347)
.++.+|+|+|.+.|+.++.++||++++|+++++..|+++++++||+|++|+++++++++||+|++|.+||||||+|++.|
T Consensus 75 ~~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t 154 (393)
T PF00022_consen 75 ALEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSST 154 (393)
T ss_dssp HHHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-E
T ss_pred ccccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeee
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCC-----------------CCCChHHHHHHHHHhccccccch
Q 019039 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSM-----------------NRTADFETVRQIKEKLCYISYDY 224 (347)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----------------~~~~~~~~~~~iK~~~~~v~~~~ 224 (347)
+|+||+||+++.++++++++||++++++|.++|.+++..+ ....+...++++|+++|+++.+.
T Consensus 155 ~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~ 234 (393)
T PF00022_consen 155 SVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDP 234 (393)
T ss_dssp EEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSH
T ss_pred eeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccc
Confidence 9999999999999999999999999999999999974332 12235778999999999999887
Q ss_pred HHHHhhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCC-------CHHHHHHHHHHhCCHHHHHhhhcc
Q 019039 225 KREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGD-------GMADMVFRCIQEMDIDNRMMLYQH 297 (347)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~-------~l~~~i~~~i~~~~~d~r~~l~~n 297 (347)
.... ...........|.||||+.+.++.+|+.+||.||+|+..+.+.. +|+++|.+++++||+|+|+.|++|
T Consensus 235 ~~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~n 313 (393)
T PF00022_consen 235 DEEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSN 313 (393)
T ss_dssp HHHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTT
T ss_pred cccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccc
Confidence 7511 11123556778999999999999999999999999998888766 999999999999999999999999
Q ss_pred eEEecCCCCCCChHHHHHHHHhhcCC-CCCeeeeecCCccccccccccccC
Q 019039 298 IVLSGGSTMYPGLPSRYYVELFFASH-DIPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 298 Ivl~GG~s~i~G~~erl~~eL~~~~~-~~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
|+||||+|++|||.+||++||..+.| ..++++......+.+++|+||+++
T Consensus 314 Ivl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsil 364 (393)
T PF00022_consen 314 IVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSIL 364 (393)
T ss_dssp EEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHH
T ss_pred eEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceee
Confidence 99999999999999999999999775 467776554448999999999974
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=5.2e-67 Score=492.04 Aligned_cols=339 Identities=51% Similarity=0.903 Sum_probs=304.9
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHHHH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~l~ 84 (347)
++||||+||++||+||+|++.|++++||++++++...... ...+.+++|+++...++...+++|+++|++.||+.++
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~---~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e 78 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMV---GDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDME 78 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEeccccccc---CCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHH
Confidence 5899999999999999999999999999999876442110 1234678999987767767899999999999999999
Q ss_pred HHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceEEE
Q 019039 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (347)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~ 164 (347)
.+|+++|.+.|+.+++++|+++++|.++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 79 ~i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 158 (373)
T smart00268 79 KIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVV 158 (373)
T ss_pred HHHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEE
Confidence 99999998799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhccc---Cccceeee
Q 019039 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE---TTILVKNY 241 (347)
Q Consensus 165 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~---~~~~~~~~ 241 (347)
||+||+++.++++++++||++++++|.++|++++..++...+.+.++++|+++|+++.++.++.+.... .......|
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (373)
T smart00268 159 PVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTY 238 (373)
T ss_pred EEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeE
Confidence 999999999999999999999999999999987666666667889999999999999888776554322 24456789
Q ss_pred eCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhc
Q 019039 242 TLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFA 321 (347)
Q Consensus 242 ~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~ 321 (347)
.+|||+.+.++.+|+.++|.||+|+..+.+..+|+++|.+++++||.|+|+.+++||+||||+|++|||.+||++||.++
T Consensus 239 ~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~ 318 (373)
T smart00268 239 ELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQL 318 (373)
T ss_pred ECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeeeeecCCccccccccccccC
Q 019039 322 SHD-IPLCFLRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 322 ~~~-~~~~~~~~~~~~~~s~w~G~~~~ 347 (347)
.|. .++++. ....+.+++|.||+++
T Consensus 319 ~p~~~~v~v~-~~~~~~~~~W~G~sil 344 (373)
T smart00268 319 APKKLKVKVI-APPERKYSVWLGGSIL 344 (373)
T ss_pred CCCCceeEEe-cCCCCccceEeCcccc
Confidence 984 455543 3456789999999975
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.7e-65 Score=481.33 Aligned_cols=340 Identities=50% Similarity=0.853 Sum_probs=303.2
Q ss_pred eEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccC-CceeeccccCCeeecHHHHH
Q 019039 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRH-QLDVSYPVNNGIVQNWEDMG 84 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~p~~~g~i~~~~~l~ 84 (347)
+||||+||.++|+||+|++.|++++||++++++...... +.....+++|+++....+ ...+++|+++|++.||+.++
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~--~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e 78 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMV--GAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDME 78 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCccccc--ccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHH
Confidence 689999999999999999999999999999876543111 122357889998876554 48899999999999999999
Q ss_pred HHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCceEEE
Q 019039 85 QVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVV 164 (347)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~ 164 (347)
.+|+|+|.+.+..+++++++++++|+++++..|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 158 (371)
T cd00012 79 KIWDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVV 158 (371)
T ss_pred HHHHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEE
Confidence 99999998888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhh-cccCccceeeeeC
Q 019039 165 PVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL-GLETTILVKNYTL 243 (347)
Q Consensus 165 pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~-~~~~~~~~~~~~l 243 (347)
||+||+++.+++.++++||+++++++.++|+.++..+....+...++++|+++|+++.++..+... ..........|.+
T Consensus 159 pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~l 238 (371)
T cd00012 159 PVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYEL 238 (371)
T ss_pred EEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEEC
Confidence 999999999999999999999999999999998876666678899999999999999888766421 1223445678999
Q ss_pred CCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCC
Q 019039 244 PDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASH 323 (347)
Q Consensus 244 pdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~ 323 (347)
|||+.+.++.+||.+||.||+|+..+....+|+++|.++++.||.|.|+.+++||+||||+|++|||.+||++||..+.|
T Consensus 239 pd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~ 318 (371)
T cd00012 239 PDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAP 318 (371)
T ss_pred CCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999998
Q ss_pred CCCe-ee-eecCCccccccccccccC
Q 019039 324 DIPL-CF-LRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 324 ~~~~-~~-~~~~~~~~~s~w~G~~~~ 347 (347)
..+. ++ ......+.+++|+||+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~aw~G~si~ 344 (371)
T cd00012 319 PSKDTKVKVIAPPERKYSVWLGGSIL 344 (371)
T ss_pred cccceEEEEccCCCccccEEeCchhh
Confidence 7321 12 234567899999999985
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=4e-61 Score=450.85 Aligned_cols=340 Identities=44% Similarity=0.760 Sum_probs=299.4
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecC-cchhhhhhhccCCceEeccccccccC--CceeeccccCCeeecHH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPM-LRYEESLMEQELKDTIVGAAALDLRH--QLDVSYPVNNGIVQNWE 81 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~p~~~g~i~~~~ 81 (347)
++||||+||.++|+||+|++.|++++|+.+++.+ +..... ....++.++|+++...++ ..++++|+++|.|.||+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~--~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~ 84 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVME--DTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWD 84 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccc--cccccccccCchhhhccCCccceeecccccCccCCcH
Confidence 3499999999999999999999999999999875 211111 233457788888876555 78899999999999999
Q ss_pred HHHHHHHHHccc--ccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCc--eEEEEecC
Q 019039 82 DMGQVWDHAFFS--ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL--TGLVIDSG 157 (347)
Q Consensus 82 ~l~~~~~~~~~~--~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~--tglVVDiG 157 (347)
.++.+|+|+|.+ .+...+.++|++++||.+++...|+++++++||++++|++++..+++|++|+.|.. +|+|||+|
T Consensus 85 ~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G 164 (444)
T COG5277 85 AMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSG 164 (444)
T ss_pred HHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcC
Confidence 999999999988 68888999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhh-----cCCCCCCC---ChHHHHHHHHHhcc-------cccc
Q 019039 158 DGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSR-----RGYSMNRT---ADFETVRQIKEKLC-------YISY 222 (347)
Q Consensus 158 ~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~iK~~~~-------~v~~ 222 (347)
++.|+|+||+||.++.++++++++||++++.+|.++|.. +++.+... .+.++++.+|++.| |+..
T Consensus 165 ~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~ 244 (444)
T COG5277 165 DSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSL 244 (444)
T ss_pred CCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhh
Confidence 999999999999999999999999999999999999999 56666555 67899999999999 8877
Q ss_pred chHHHHhhccc----------------CccceeeeeCCCCceEEeCCc-cccccccccCCC--CCCCCCCC---------
Q 019039 223 DYKREYQLGLE----------------TTILVKNYTLPDGRVIKVGTE-RFQAPEALFTPE--LIDVEGDG--------- 274 (347)
Q Consensus 223 ~~~~~~~~~~~----------------~~~~~~~~~lpdg~~i~i~~~-~~~~~E~lF~p~--~~~~~~~~--------- 274 (347)
+..++.+...+ .......+.+||++.+.++.+ ||.+||.+|+|. ..+.+..+
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~ 324 (444)
T COG5277 245 DAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQEL 324 (444)
T ss_pred cchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhh
Confidence 66544332211 233466788999999999999 999999999999 77666555
Q ss_pred ------------------HHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCCC-CCeeeeecCCc
Q 019039 275 ------------------MADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASHD-IPLCFLRNLGL 335 (347)
Q Consensus 275 ------------------l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~-~~~~~~~~~~~ 335 (347)
|++++.++|..||.+.|+.|++||+||||+|++|||.+||++||+.+.|. ..+.+.+.. .
T Consensus 325 ~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~-~ 403 (444)
T COG5277 325 VAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP-D 403 (444)
T ss_pred hhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC-c
Confidence 99999999999999999999999999999999999999999999999997 555654444 9
Q ss_pred cccccccccccC
Q 019039 336 HVYSLFLSVFVL 347 (347)
Q Consensus 336 ~~~s~w~G~~~~ 347 (347)
+.+.+|+|||++
T Consensus 404 ~~~~~W~GaSil 415 (444)
T COG5277 404 PSLDAWLGASIL 415 (444)
T ss_pred hhhccccchhhh
Confidence 999999999985
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=3.3e-59 Score=401.90 Aligned_cols=332 Identities=27% Similarity=0.461 Sum_probs=289.2
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEecccccccc--CCceeeccccCCeeec
Q 019039 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR--HQLDVSYPVNNGIVQN 79 (347)
Q Consensus 2 ~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~p~~~g~i~~ 79 (347)
|+..+||+|+|++++|+|+++++.|. .+|+++.+.+.. .++.++|++..+.+ +.+.+++|+++|.+++
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~---------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvn 70 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG---------RRRSFLANEIDECKDISSLFYRRPHERGYLVN 70 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc---------cchhhhhhhhhhccCccceEEeehhhcceeEe
Confidence 34679999999999999999999997 569998775432 34578887766544 4577889999999999
Q ss_pred HHHHHHHHHHHcccc-cCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhC---C--------
Q 019039 80 WEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ---G-------- 147 (347)
Q Consensus 80 ~~~l~~~~~~~~~~~-l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~---g-------- 147 (347)
|+....+|+++|.+. ++.+.+++.+++|||.++-++..+...|++||.|++.+++=...+.++++-. +
T Consensus 71 W~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~ 150 (400)
T KOG0680|consen 71 WDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTS 150 (400)
T ss_pred ehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccc
Confidence 999999999999533 2355679999999999999999999999999999999999999999998862 1
Q ss_pred CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHH
Q 019039 148 LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKRE 227 (347)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 227 (347)
...+||||.|++.|+|+|+.+|.+..++++++++||+.+|++|++.+..+. ++.+.+...++++||..|||++|+.++
T Consensus 151 ~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~--lNvmdET~vVNeiKEdvcfVSqnF~~~ 228 (400)
T KOG0680|consen 151 SECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRH--LNVMDETYVVNEIKEDVCFVSQNFKED 228 (400)
T ss_pred cceEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhh--hcccchhhhhhhhhhheEEechhhHHH
Confidence 126899999999999999999999999999999999999999999999886 444567889999999999999999988
Q ss_pred HhhcccC---ccceeeeeCCC-------------------CceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHh
Q 019039 228 YQLGLET---TILVKNYTLPD-------------------GRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQE 285 (347)
Q Consensus 228 ~~~~~~~---~~~~~~~~lpd-------------------g~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~ 285 (347)
.+.+... ......|.||| .+.|.+.+|||.+||+||+|++++.+++||+++|.+|+..
T Consensus 229 m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~ 308 (400)
T KOG0680|consen 229 MDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSM 308 (400)
T ss_pred HHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHh
Confidence 8776543 23456788876 3568899999999999999999999999999999999999
Q ss_pred CCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCC-CCCeeeeecCCcccccccccccc
Q 019039 286 MDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASH-DIPLCFLRNLGLHVYSLFLSVFV 346 (347)
Q Consensus 286 ~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~-~~~~~~~~~~~~~~~s~w~G~~~ 346 (347)
||.++|+.|+.||+++||++++|||.+||..||+.+.| ++.++.. .+..+..-+|-||+-
T Consensus 309 ~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~-~p~dp~~~~W~~g~~ 369 (400)
T KOG0680|consen 309 LPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVS-VPEDPITFAWEGGSE 369 (400)
T ss_pred CHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEe-cCCCcceeeehhccc
Confidence 99999999999999999999999999999999999999 6666644 347788889999874
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=4.3e-48 Score=353.30 Aligned_cols=337 Identities=28% Similarity=0.431 Sum_probs=271.9
Q ss_pred CCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccC-CceeeccccCCeeecH
Q 019039 2 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRH-QLDVSYPVNNGIVQNW 80 (347)
Q Consensus 2 ~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~p~~~g~i~~~ 80 (347)
....|||||+||+.+||||+|+..|+.+|++++.+++++...+ .-.++|++...... ....+.|+++.+|+||
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~------s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNw 94 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGA------SVTLVGNDILNFQGVRSSPRSPFDRNVVTNW 94 (645)
T ss_pred cCCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccccc------ccccccchhhhhhhhhccCCCCCcCCccccH
Confidence 3467999999999999999999999999999999988764332 12356665433221 2345779999999999
Q ss_pred HHHHHHHHHHcccccCCCCC--CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhh-CC---CceEEEE
Q 019039 81 EDMGQVWDHAFFSELKIDPP--ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYA-QG---LLTGLVI 154 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~--~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~-~g---~~tglVV 154 (347)
+.+|.+++|+| .+|+.+.. +||+++||+..+|...|+.+.|+|||.+|+|+|.+.-+++.|+|. .+ ..+|+||
T Consensus 95 el~E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~lii 173 (645)
T KOG0681|consen 95 ELMEQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLII 173 (645)
T ss_pred HHHHHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEE
Confidence 99999999999 89999874 899999999999999999999999999999999999999999993 23 3469999
Q ss_pred ecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhh----
Q 019039 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL---- 230 (347)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~---- 230 (347)
++|+++|+|+||.||..+...++++++||.+...||.+++..+.+.+....+...++.++..+||++.|+.++...
T Consensus 174 s~g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~ 253 (645)
T KOG0681|consen 174 SMGHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEM 253 (645)
T ss_pred ecCCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999887655444555666666666666666554322100
Q ss_pred ------------------------------------------------cc------------------------------
Q 019039 231 ------------------------------------------------GL------------------------------ 232 (347)
Q Consensus 231 ------------------------------------------------~~------------------------------ 232 (347)
++
T Consensus 254 d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~ 333 (645)
T KOG0681|consen 254 DYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKF 333 (645)
T ss_pred hhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhc
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 019039 233 -------------------------------------------------------------------------------- 232 (347)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (347)
T Consensus 334 ~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e 413 (645)
T KOG0681|consen 334 PLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQE 413 (645)
T ss_pred hhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -------------------------c---Cc--cc------------------------------------eeeeeCC--
Q 019039 233 -------------------------E---TT--IL------------------------------------VKNYTLP-- 244 (347)
Q Consensus 233 -------------------------~---~~--~~------------------------------------~~~~~lp-- 244 (347)
. .. .+ +..|+--
T Consensus 414 ~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~ 493 (645)
T KOG0681|consen 414 LKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVE 493 (645)
T ss_pred hhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccc
Confidence 0 00 00 0000000
Q ss_pred ---C------------CceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCC
Q 019039 245 ---D------------GRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPG 309 (347)
Q Consensus 245 ---d------------g~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G 309 (347)
| ...+.++.|++++||++|+|+++|.++.||.+++..++++.|.|.+..+.+||+||||.|.+||
T Consensus 494 ~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pG 573 (645)
T KOG0681|consen 494 GTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPG 573 (645)
T ss_pred cccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcC
Confidence 0 0135578899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCC-CeeeeecCCcccccccccccc
Q 019039 310 LPSRYYVELFFASHDI-PLCFLRNLGLHVYSLFLSVFV 346 (347)
Q Consensus 310 ~~erl~~eL~~~~~~~-~~~~~~~~~~~~~s~w~G~~~ 346 (347)
+.+||..||..+.|-- ++. +.....+...+|.||+.
T Consensus 574 mkeRi~kElt~mrP~gS~i~-V~rasdP~LDAW~GA~~ 610 (645)
T KOG0681|consen 574 MKERIKKELTSMRPVGSSIN-VVRASDPVLDAWRGASA 610 (645)
T ss_pred HHHHHHHHhheecccCCceE-EEecCCcchhhhhhhHH
Confidence 9999999999999843 433 55667788999999974
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=9.6e-49 Score=337.82 Aligned_cols=346 Identities=37% Similarity=0.591 Sum_probs=286.5
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhh------hhhccCCceEeccccccccCCceeeccccC
Q 019039 1 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEES------LMEQELKDTIVGAAALDLRHQLDVSYPVNN 74 (347)
Q Consensus 1 ~~~~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~ 74 (347)
|.++.++|+|+|+.++|.||+|...|++++|++++......... ..+....++++|+++.. .+.+.+.||+++
T Consensus 1 ~~~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRh 79 (415)
T KOG0678|consen 1 MAGNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRH 79 (415)
T ss_pred CCCCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceec
Confidence 55667799999999999999999999999999987532111000 01233458899999887 557889999999
Q ss_pred CeeecHHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCC-------
Q 019039 75 GIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG------- 147 (347)
Q Consensus 75 g~i~~~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g------- 147 (347)
|.+.|||.+|++|...+.+.|..+|++|-.+++||+.+++++|+.++|++||.|++|.+|+.-++++|+-++-
T Consensus 80 g~ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~e 159 (415)
T KOG0678|consen 80 GQVEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGE 159 (415)
T ss_pred cccccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred -CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHH
Q 019039 148 -LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKR 226 (347)
Q Consensus 148 -~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~ 226 (347)
.-||+|+|.|.+.|+|+||.+|+++-++++..++.|+++|-.+.+++++++..++.....+.++.+|+++||+.+|+.+
T Consensus 160 r~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivk 239 (415)
T KOG0678|consen 160 RFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVK 239 (415)
T ss_pred heeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHH
Confidence 4689999999999999999999999999999999999999999999999988888788899999999999999999887
Q ss_pred HHhhcccCc-cceeeee---CCCC--ceEEeCCccccccccccCCCCCCCC-CCCHHHHHHHHHHhCCHHHHHhhhcceE
Q 019039 227 EYQLGLETT-ILVKNYT---LPDG--RVIKVGTERFQAPEALFTPELIDVE-GDGMADMVFRCIQEMDIDNRMMLYQHIV 299 (347)
Q Consensus 227 ~~~~~~~~~-~~~~~~~---lpdg--~~i~i~~~~~~~~E~lF~p~~~~~~-~~~l~~~i~~~i~~~~~d~r~~l~~nIv 299 (347)
+..+..... .--+.|. .-.| ..++++-+||..||++|+|...+.+ -.++++++...|+.||+|.|+.||+||+
T Consensus 240 ef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~niv 319 (415)
T KOG0678|consen 240 EFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIV 319 (415)
T ss_pred HHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHh
Confidence 754422111 0011111 1112 2467788999999999999977655 4568999999999999999999999999
Q ss_pred EecCCCCCCChHHHHHHHHhhcCC----------CCCee---e-eecCCccccccccccccC
Q 019039 300 LSGGSTMYPGLPSRYYVELFFASH----------DIPLC---F-LRNLGLHVYSLFLSVFVL 347 (347)
Q Consensus 300 l~GG~s~i~G~~erl~~eL~~~~~----------~~~~~---~-~~~~~~~~~s~w~G~~~~ 347 (347)
+.||.+.+++|..|++++++.+.- ..+.+ + +-.-..++++.|.|+|+|
T Consensus 320 lsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~l 381 (415)
T KOG0678|consen 320 LSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKL 381 (415)
T ss_pred hccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccc
Confidence 999999999999999999987641 11111 1 112244789999999875
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.5e-37 Score=286.61 Aligned_cols=285 Identities=20% Similarity=0.208 Sum_probs=224.4
Q ss_pred eEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeecHH
Q 019039 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~~ 81 (347)
.++||+||.++|+|++|+. +....||+++..... .+.+++|+++... .....+.+|+++|.+.||+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~---------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 79 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT---------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFE 79 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC---------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHH
Confidence 4999999999999999776 466789999865321 1257899998754 3457889999999999999
Q ss_pred HHHHHHHHHcccccCCCC-CCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEe
Q 019039 82 DMGQVWDHAFFSELKIDP-PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (347)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~-~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 155 (347)
.++.+|++++.+.+...+ ...+++++.|...+...|+.+.+ +||.+|++.++++++|+||+|++|. .+++|||
T Consensus 80 ~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvD 158 (335)
T PRK13930 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 158 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEE
Confidence 999999999954444323 36789999999988887777766 7999999999999999999999987 5689999
Q ss_pred cCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCc
Q 019039 156 SGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETT 235 (347)
Q Consensus 156 iG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~ 235 (347)
+|+++|+++++.+|.++.. ...++||+++|+.+.+++.++. .+ ..+.+.++++|+++|++..+...+. . ...
T Consensus 159 iG~gttdvs~v~~g~~~~~--~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~~~~~~-~--~~~ 230 (335)
T PRK13930 159 IGGGTTEVAVISLGGIVYS--ESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPLDEEES-M--EVR 230 (335)
T ss_pred eCCCeEEEEEEEeCCEEee--cCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCCCCCce-E--EEE
Confidence 9999999999999988763 5689999999999999987651 12 2356789999999998876532210 0 000
Q ss_pred cceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcc-eEEecCCCCCCChHHHH
Q 019039 236 ILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGLPSRY 314 (347)
Q Consensus 236 ~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~erl 314 (347)
.....+.+|+ .+.++.+++. |.+|+|- .++.+.|.+++++++.+.+..+..| |+|+||+|++|||.+||
T Consensus 231 ~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l 300 (335)
T PRK13930 231 GRDLVTGLPK--TIEISSEEVR--EALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLL 300 (335)
T ss_pred CccCCCCCCe--eEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHH
Confidence 0111223333 4556666553 6777752 3688999999999999999999987 99999999999999999
Q ss_pred HHHHh
Q 019039 315 YVELF 319 (347)
Q Consensus 315 ~~eL~ 319 (347)
++++.
T Consensus 301 ~~~~~ 305 (335)
T PRK13930 301 SEETG 305 (335)
T ss_pred HHHHC
Confidence 99986
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.8e-37 Score=283.08 Aligned_cols=284 Identities=18% Similarity=0.206 Sum_probs=220.3
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeecH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (347)
..|+||+||.++|+|++|++. .+.+||+++.+... .+.+++|+++... .....+.+|+++|.+.||
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~---------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~ 75 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT---------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADF 75 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC---------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCH
Confidence 469999999999999999876 57899999986431 1256899998764 356788999999999999
Q ss_pred HHHHHHHHHHcccccCCCCCCC-eEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEE
Q 019039 81 EDMGQVWDHAFFSELKIDPPEC-KILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~-~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVV 154 (347)
+.++.+|++++.+.++. +..+ .++++.| ......++++++.+||.++++.++++++|+||+|++|. .+++||
T Consensus 76 ~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvv 153 (334)
T PRK13927 76 DVTEKMLKYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVV 153 (334)
T ss_pred HHHHHHHHHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEE
Confidence 99999999999777666 5555 4666666 55566777888999999999999999999999999987 457999
Q ss_pred ecCCCceEEEEe-ecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhccc
Q 019039 155 DSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE 233 (347)
Q Consensus 155 DiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~ 233 (347)
|+|+++|+++++ .+|....+. .++||+++|++|.+++.++. .+ ..+.+.++++|+++|++..+.... .. .
T Consensus 154 DiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~~~~~~-~~--~ 224 (334)
T PRK13927 154 DIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYPGDEVL-EM--E 224 (334)
T ss_pred EeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCCCCCCc-eE--E
Confidence 999999999999 777665544 57999999999999987542 11 235678999999999876432101 00 0
Q ss_pred CccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcc-eEEecCCCCCCChHH
Q 019039 234 TTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGLPS 312 (347)
Q Consensus 234 ~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~~e 312 (347)
.......+.+|+ .+.++.++|. |.+|+|- .++.+.|.+++++++.+.+..++++ |+||||+|++|||.+
T Consensus 225 ~~~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~ 294 (334)
T PRK13927 225 VRGRDLVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDK 294 (334)
T ss_pred EeCcccCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHH
Confidence 000001122332 4566666664 6777652 3689999999999999988888875 999999999999999
Q ss_pred HHHHHHh
Q 019039 313 RYYVELF 319 (347)
Q Consensus 313 rl~~eL~ 319 (347)
||++++.
T Consensus 295 ~l~~~~~ 301 (334)
T PRK13927 295 LLSEETG 301 (334)
T ss_pred HHHHHHC
Confidence 9999985
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.2e-34 Score=267.64 Aligned_cols=287 Identities=15% Similarity=0.232 Sum_probs=221.9
Q ss_pred CCCCCeEEEeCCCceEEEeecCCCCCC-cccccceeecCcchhhhhhhccCCceEecccccccc----CCceeeccccCC
Q 019039 1 MDNRNVVVCDNGTGYVKCGFAGENFPN-SVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLR----HQLDVSYPVNNG 75 (347)
Q Consensus 1 ~~~~~~vViD~Gs~~ik~G~ag~~~P~-~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g 75 (347)
|-....+-||+||.++++ |... .+. ...||+++..... ..-+.+|++|.+.. ....+.+|+++|
T Consensus 1 ~~~~~~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~---------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G 69 (335)
T PRK13929 1 MFQSTEIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTET---------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDG 69 (335)
T ss_pred CCCCCeEEEEcccccEEE-EECC-CcEEecCCcEEEEECCC---------CeEEEeCHHHHHhhhcCCCcEEEEecCCCC
Confidence 334557999999999998 4322 233 3468888764221 11357999987643 567788999999
Q ss_pred eeecHHHHHHHHHHHccc---ccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCC-----
Q 019039 76 IVQNWEDMGQVWDHAFFS---ELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG----- 147 (347)
Q Consensus 76 ~i~~~~~l~~~~~~~~~~---~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g----- 147 (347)
.|.|||..+.+|++++.+ .++..+..+++++++|+..+..+|+.+.+ +|+.+|++.++++++|+||++++|
T Consensus 70 ~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~ 148 (335)
T PRK13929 70 VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDE 148 (335)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCC
Confidence 999999999999999963 56665656789999999999999999999 899999999999999999999997
Q ss_pred CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHH
Q 019039 148 LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKRE 227 (347)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 227 (347)
..+++|||+|+++|+++++..|..+.. ...++||+++|++|.+.+.+. +.+ ..+...++++|+++|++..+...+
T Consensus 149 ~~~~lvvDiG~gtt~v~vi~~~~~~~~--~~~~~GG~~id~~l~~~l~~~-~~~--~~~~~~AE~iK~~l~~~~~~~~~~ 223 (335)
T PRK13929 149 PVANVVVDIGGGTTEVAIISFGGVVSC--HSIRIGGDQLDEDIVSFVRKK-YNL--LIGERTAEQVKMEIGYALIEHEPE 223 (335)
T ss_pred CceEEEEEeCCCeEEEEEEEeCCEEEe--cCcCCHHHHHHHHHHHHHHHH-hCc--CcCHHHHHHHHHHHcCCCCCCCCc
Confidence 467899999999999999944443332 246899999999999998753 222 234678999999999876543211
Q ss_pred HhhcccCccceeeeeCCCCceEEeCCcccc--ccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-ceEEecCC
Q 019039 228 YQLGLETTILVKNYTLPDGRVIKVGTERFQ--APEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGS 304 (347)
Q Consensus 228 ~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~--~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~ 304 (347)
... .......+.+| ..+.++.+++. +.|.+|+ +.+.|.+++++++.+++..+.+ +|+||||+
T Consensus 224 ~~~---v~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~ 288 (335)
T PRK13929 224 TME---VRGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGG 288 (335)
T ss_pred eEE---EeCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchh
Confidence 000 00001112333 35777777775 5777776 9999999999999999989998 69999999
Q ss_pred CCCCChHHHHHHHHh
Q 019039 305 TMYPGLPSRYYVELF 319 (347)
Q Consensus 305 s~i~G~~erl~~eL~ 319 (347)
|++|||.+||++++.
T Consensus 289 s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 289 ALLNGIKEWLSEEIV 303 (335)
T ss_pred hhhhhHHHHHHHHHC
Confidence 999999999999996
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1e-34 Score=268.60 Aligned_cols=289 Identities=18% Similarity=0.160 Sum_probs=220.6
Q ss_pred eEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeecHH
Q 019039 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNWE 81 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~~ 81 (347)
.+-||+||.++++-..+. .-....||+++...... +...+-+.+|+++... .....+.+|+++|.+.||+
T Consensus 4 ~~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~-----~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~ 77 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD-----AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFE 77 (333)
T ss_pred eeEEecCcceEEEEECCC-CEEEecCCEEEEecCCC-----CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHH
Confidence 489999999999955433 23456788887653211 0011246799998764 3578889999999999999
Q ss_pred HHHHHHHHHcccccCCCCCC-CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEe
Q 019039 82 DMGQVWDHAFFSELKIDPPE-CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVID 155 (347)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~-~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVD 155 (347)
.++.+|+|++.+.+...... .++++++|..++...|+. ++.+||.++++.++++++|+||+|++|. .+++|||
T Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvD 156 (333)
T TIGR00904 78 VTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVD 156 (333)
T ss_pred HHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEE
Confidence 99999999997666542222 369999999999988877 6668999999999999999999999997 6789999
Q ss_pred cCCCceEEEEe-ecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccC
Q 019039 156 SGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (347)
Q Consensus 156 iG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~ 234 (347)
+|+++|+++++ ++|...... .++||+++|+.|.+++.++. ....+.+.++++|+++|++..+...+... ..
T Consensus 157 iG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~---~~~~~~~~ae~lK~~l~~~~~~~~~~~~~--~~ 228 (333)
T TIGR00904 157 IGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTY---NLLIGEQTAERIKIEIGSAYPLNDEPRKM--EV 228 (333)
T ss_pred cCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHhccccccccccce--ee
Confidence 99999999999 777666543 48999999999999887541 22345788999999999876542221111 00
Q ss_pred ccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-ceEEecCCCCCCChHHH
Q 019039 235 TILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGSTMYPGLPSR 313 (347)
Q Consensus 235 ~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~er 313 (347)
......+.+|++. .++.+ .+.|.+|+|- .++.+.|.+++++++.+.+..+++ +|+||||+|++|||.+|
T Consensus 229 ~~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~ 298 (333)
T TIGR00904 229 RGRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKL 298 (333)
T ss_pred cCccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHH
Confidence 1112234566654 44433 4668888862 368899999999999999999986 79999999999999999
Q ss_pred HHHHHh
Q 019039 314 YYVELF 319 (347)
Q Consensus 314 l~~eL~ 319 (347)
|++++.
T Consensus 299 l~~~~~ 304 (333)
T TIGR00904 299 LSKETG 304 (333)
T ss_pred HHHHHC
Confidence 999995
No 20
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=243.22 Aligned_cols=278 Identities=22% Similarity=0.323 Sum_probs=208.7
Q ss_pred CCceeeccccCCeeec----------HHHHHHHHHHHcccccCCCCC---CCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 64 HQLDVSYPVNNGIVQN----------WEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 64 ~~~~~~~p~~~g~i~~----------~~~l~~~~~~~~~~~l~~~~~---~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
..+.+++|+++|.+.- .+.++++|+|++.+.|++.++ ++.++++.|...-+..-+.++.++|-++++
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3678899999998753 267899999999999999764 789999999999999999999999999999
Q ss_pred CeEeeehhhhHhhhhCCCceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCC-----CCCCC
Q 019039 131 AGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYS-----MNRTA 205 (347)
Q Consensus 131 ~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----~~~~~ 205 (347)
.++.++.+++|++|++|.++++|||||+..|+|++|-||..++++...+++||+++++.|..+|.+.+.. +....
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654 44678
Q ss_pred hHHHHHHHHHhccccccchHHHHhh---cccCccceeeeeCCCCceEEeCCccccccccccCCCCCC-------------
Q 019039 206 DFETVRQIKEKLCYISYDYKREYQL---GLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELID------------- 269 (347)
Q Consensus 206 ~~~~~~~iK~~~~~v~~~~~~~~~~---~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~------------- 269 (347)
++.+++++|+++|....+.-..+.. .+.+......|+ ..++.|...+|-.||.|.++.
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kyt------fk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~ 410 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYT------FKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFP 410 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeee------eeccchhhccchhhhhhhhhhccccccccccccC
Confidence 9999999999999876421111000 000010011111 111112222222222221110
Q ss_pred --------------------------------------------------------------------------------
Q 019039 270 -------------------------------------------------------------------------------- 269 (347)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (347)
T Consensus 411 q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~ 490 (618)
T KOG0797|consen 411 QPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIM 490 (618)
T ss_pred CCCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhh
Confidence
Q ss_pred ------CCC----CCHHHHHHHHHHhC-CHHHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCCC-----CCeeeeecC
Q 019039 270 ------VEG----DGMADMVFRCIQEM-DIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASHD-----IPLCFLRNL 333 (347)
Q Consensus 270 ------~~~----~~l~~~i~~~i~~~-~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~-----~~~~~~~~~ 333 (347)
... ..+.+.|..+|..+ ..|.++.+++.|.++||+..+||+.+-|++.+....|. ..+.+++.+
T Consensus 491 n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~p 570 (618)
T KOG0797|consen 491 NKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPP 570 (618)
T ss_pred cccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCC
Confidence 001 13445577777665 55889999999999999999999999999999875543 123444444
Q ss_pred --CccccccccccccC
Q 019039 334 --GLHVYSLFLSVFVL 347 (347)
Q Consensus 334 --~~~~~s~w~G~~~~ 347 (347)
-.+++-+|=||.|+
T Consensus 571 rdMdp~~VaWKGaaIl 586 (618)
T KOG0797|consen 571 RDMDPQFVAWKGAAIL 586 (618)
T ss_pred cCCCchheEecchhhh
Confidence 67899999999885
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=3.9e-30 Score=232.86 Aligned_cols=293 Identities=17% Similarity=0.215 Sum_probs=209.5
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeecH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (347)
.-+-||+||.+|++ |..+..=....||.++...... +-..+|+++.+. .....+.+|+++|+|.|+
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~---------~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~ 71 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTG---------KILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADY 71 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT-----------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCCC---------eEEEEhHHHHHHhhcCCCccEEEccccCCcccCH
Confidence 46889999999999 5444444456799988654321 244589988763 467889999999999999
Q ss_pred HHHHHHHHHHcccccCC-CCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEE
Q 019039 81 EDMGQVWDHAFFSELKI-DPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVI 154 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~-~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVV 154 (347)
+..+.+++|++++..+. ......++++.|...+.-.|+.+.+.+ ...|+..++++++|++|++++|. ...+||
T Consensus 72 ~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miV 150 (326)
T PF06723_consen 72 EAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIV 150 (326)
T ss_dssp HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEE
Confidence 99999999999766664 334566999999999999988888887 56999999999999999999985 356999
Q ss_pred ecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccC
Q 019039 155 DSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLET 234 (347)
Q Consensus 155 DiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~ 234 (347)
|+|+++|.++.+..|..+.+ +.+++||+++++.+.+.++++. +-......++++|++++++....+..
T Consensus 151 DIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~y---~l~Ig~~tAE~iK~~~g~~~~~~~~~------- 218 (326)
T PF06723_consen 151 DIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREKY---NLLIGERTAEKIKIEIGSASPPEEEE------- 218 (326)
T ss_dssp EE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHHH---SEE--HHHHHHHHHHH-BSS--HHHH-------
T ss_pred EECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHhh---CcccCHHHHHHHHHhcceeeccCCCc-------
Confidence 99999999999999988775 5689999999999999998873 23467899999999998876432222
Q ss_pred ccceeeeeCCCCce--EEeC-CccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcc-eEEecCCCCCCCh
Q 019039 235 TILVKNYTLPDGRV--IKVG-TERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPGL 310 (347)
Q Consensus 235 ~~~~~~~~lpdg~~--i~i~-~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G~ 310 (347)
...-.-..+-+|.. +.++ .+...+.+..++ .+.+.|.++++++|+++..++.+| |+||||+|+++||
T Consensus 219 ~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl 289 (326)
T PF06723_consen 219 SMEVRGRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGL 289 (326)
T ss_dssp EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTH
T ss_pred eEEEECccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccH
Confidence 11111222334432 3343 244445555555 499999999999999999998865 9999999999999
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCC
Q 019039 311 PSRYYVELFFASHDIPLCFLRNLG 334 (347)
Q Consensus 311 ~erl~~eL~~~~~~~~~~~~~~~~ 334 (347)
.++|++++. .++...+++.
T Consensus 290 ~~~i~~~~~-----~pV~va~~P~ 308 (326)
T PF06723_consen 290 DEYISEETG-----VPVRVADDPL 308 (326)
T ss_dssp HHHHHHHHS-----S-EEE-SSTT
T ss_pred HHHHHHHHC-----CCEEEcCCHH
Confidence 999999994 5555544443
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=6.6e-30 Score=236.62 Aligned_cols=286 Identities=18% Similarity=0.182 Sum_probs=209.6
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeecH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQNW 80 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~~ 80 (347)
..+-||+||.++++-..++ .-.+..||.+...... ..-+.+|+++... .....+.+|+++|.|.||
T Consensus 4 ~~~gIDlGt~~~~i~~~~~-~~v~~~psvv~~~~~~---------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~ 73 (336)
T PRK13928 4 RDIGIDLGTANVLVYVKGK-GIVLNEPSVVAIDKNT---------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADY 73 (336)
T ss_pred ceeEEEcccccEEEEECCC-CEEEccCCEEEEECCC---------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecH
Confidence 3589999999999965533 3334578887754221 1134789987654 245677899999999999
Q ss_pred HHHHHHHHHHcccccCCC-CCCCe-EEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEE
Q 019039 81 EDMGQVWDHAFFSELKID-PPECK-ILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLV 153 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~-~~~~~-v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglV 153 (347)
+..+.+|+|++ +.+... ...+| +++++|...+ ..+++.++.+|+.+|++.+.++++|+||++++|. ..++|
T Consensus 74 ~~~~~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~-~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lV 151 (336)
T PRK13928 74 DVTEKMLKYFI-NKACGKRFFSKPRIMICIPTGIT-SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMV 151 (336)
T ss_pred HHHHHHHHHHH-HHHhccCCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEE
Confidence 99999999999 444333 44566 8888865554 5677888888999999999999999999999987 67899
Q ss_pred EecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhccc
Q 019039 154 IDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLE 233 (347)
Q Consensus 154 VDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~ 233 (347)
||+|+++|+++++..|..+.+. ..++||+++|+.+.+.+..+. .+ ......++++|++++.+..+...+ .. .
T Consensus 152 vDiGggttdvsvv~~g~~~~~~--~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~~~~~~~-~~--~ 223 (336)
T PRK13928 152 VDIGGGTTDIAVLSLGGIVTSS--SIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAFPGAREE-EM--E 223 (336)
T ss_pred EEeCCCeEEEEEEEeCCEEEeC--CcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccccccCCc-EE--E
Confidence 9999999999999999776643 689999999999999987542 11 134567999999988764331100 00 0
Q ss_pred CccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhc-ceEEecCCCCCCChHH
Q 019039 234 TTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQ-HIVLSGGSTMYPGLPS 312 (347)
Q Consensus 234 ~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~-nIvl~GG~s~i~G~~e 312 (347)
.......+.+|+ .+.++.+++. |.++.+ ...+.+.|.+++.+++.+++..... +|+||||+|++||+.+
T Consensus 224 v~g~~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e 293 (336)
T PRK13928 224 IRGRDLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDK 293 (336)
T ss_pred EecccccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHH
Confidence 000001112232 2555555543 444442 1258889999999999888888887 7999999999999999
Q ss_pred HHHHHHhh
Q 019039 313 RYYVELFF 320 (347)
Q Consensus 313 rl~~eL~~ 320 (347)
+|++++..
T Consensus 294 ~l~~~~~~ 301 (336)
T PRK13928 294 LLAEETKV 301 (336)
T ss_pred HHHHHHCC
Confidence 99999963
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.93 E-value=7e-25 Score=191.79 Aligned_cols=289 Identities=19% Similarity=0.190 Sum_probs=210.3
Q ss_pred CCeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccc----cCCceeeccccCCeeec
Q 019039 4 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDL----RHQLDVSYPVNNGIVQN 79 (347)
Q Consensus 4 ~~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~~ 79 (347)
++.+-||+||.+|++ |.-+..--...||+++...... ...-..+|+++... .++....+|+++|+|.|
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~-------~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd 77 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGK-------TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIAD 77 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecCC-------CceEEEehHHHHHHhccCCCCceEEeecCCcEeec
Confidence 468999999999999 5544444456788887654311 11245689998763 46678889999999999
Q ss_pred HHHHHHHHHHHcccccCCCC--CCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEE
Q 019039 80 WEDMGQVWDHAFFSELKIDP--PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGL 152 (347)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tgl 152 (347)
++..+.+++|..++..+-.. ..-.++++.|...+.-.|+.+-+.+ +..+...++++++|.+|++++|. +...
T Consensus 78 ~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~m 156 (342)
T COG1077 78 FEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSM 156 (342)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCE
Confidence 99999999999855443332 2334677777777777766666654 77899999999999999999985 4479
Q ss_pred EEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcc
Q 019039 153 VIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGL 232 (347)
Q Consensus 153 VVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~ 232 (347)
|||+|+++|.|..+..|-.+... +..+||+.+++.+.+.++++ ++..+....++++|.+..++.++...+. ...
T Consensus 157 vvDIGgGTTevaVISlggiv~~~--Sirv~GD~~De~Ii~yvr~~---~nl~IGe~taE~iK~eiG~a~~~~~~~~-~~~ 230 (342)
T COG1077 157 VVDIGGGTTEVAVISLGGIVSSS--SVRVGGDKMDEAIIVYVRKK---YNLLIGERTAEKIKIEIGSAYPEEEDEE-LEM 230 (342)
T ss_pred EEEeCCCceeEEEEEecCEEEEe--eEEEecchhhHHHHHHHHHH---hCeeecHHHHHHHHHHhcccccccCCcc-cee
Confidence 99999999999999888777653 46799999999999999887 3334567789999999988775322210 000
Q ss_pred cCccceeeeeCCCCceEEeCCcc--ccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcc-eEEecCCCCCCC
Q 019039 233 ETTILVKNYTLPDGRVIKVGTER--FQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQH-IVLSGGSTMYPG 309 (347)
Q Consensus 233 ~~~~~~~~~~lpdg~~i~i~~~~--~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~n-Ivl~GG~s~i~G 309 (347)
+........-+|. .+.++.+. -..-|.+. .|.+.+...+.+||+++-.+...+ |+++||+|++.|
T Consensus 231 eV~Grdl~~GlPk--~i~i~s~ev~eal~~~v~----------~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrg 298 (342)
T COG1077 231 EVRGRDLVTGLPK--TITINSEEIAEALEEPLN----------GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRG 298 (342)
T ss_pred eEEeeecccCCCe--eEEEcHHHHHHHHHHHHH----------HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcC
Confidence 0011111111222 23333322 12223333 488999999999999999999999 999999999999
Q ss_pred hHHHHHHHHh
Q 019039 310 LPSRYYVELF 319 (347)
Q Consensus 310 ~~erl~~eL~ 319 (347)
+.+.|.+|..
T Consensus 299 lD~~i~~et~ 308 (342)
T COG1077 299 LDRLLSEETG 308 (342)
T ss_pred chHhHHhccC
Confidence 9999998864
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.80 E-value=1.6e-18 Score=152.26 Aligned_cols=208 Identities=17% Similarity=0.226 Sum_probs=151.7
Q ss_pred ccccCCeeecHHHHHHHHHHHcccc-cCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC
Q 019039 70 YPVNNGIVQNWEDMGQVWDHAFFSE-LKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL 148 (347)
Q Consensus 70 ~p~~~g~i~~~~~l~~~~~~~~~~~-l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~ 148 (347)
.|+.+|.|.|++..+.+++++.... -....+-..++++.|...+..+|+.+.+ +++..|+..+.+..+|++++.+++.
T Consensus 29 ~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~-a~~~aGl~~~~li~ep~Aaa~~~~~ 107 (239)
T TIGR02529 29 DVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVN-VIESAGIEVLHVLDEPTAAAAVLQI 107 (239)
T ss_pred ccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHH-HHHHcCCceEEEeehHHHHHHHhcC
Confidence 4899999999999999999998421 1122234679999998888888876654 4577899999999999999999888
Q ss_pred ceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHH
Q 019039 149 LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREY 228 (347)
Q Consensus 149 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 228 (347)
...+|||+|+++|+++-+.+|.++. ....++||+++|+.+.+.+. .+.+.++++|..... ..+.
T Consensus 108 ~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~-----~~~~ 171 (239)
T TIGR02529 108 KNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD-----EEEI 171 (239)
T ss_pred CCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-----HHHH
Confidence 8889999999999999999998776 35678999999999876653 357888999876431 0110
Q ss_pred hhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCC
Q 019039 229 QLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYP 308 (347)
Q Consensus 229 ~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~ 308 (347)
+...+.+.+ .+.+.+.+++++.+. ..|+||||+|++|
T Consensus 172 ---------------------------~~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a~ip 208 (239)
T TIGR02529 172 ---------------------------FPVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGACSFS 208 (239)
T ss_pred ---------------------------HHHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchhcch
Confidence 011111111 355555566654443 4799999999999
Q ss_pred ChHHHHHHHHhhcCCCCCeeeeecCCccccccccccc
Q 019039 309 GLPSRYYVELFFASHDIPLCFLRNLGLHVYSLFLSVF 345 (347)
Q Consensus 309 G~~erl~~eL~~~~~~~~~~~~~~~~~~~~s~w~G~~ 345 (347)
|+.++|++.+... +. ....+.+..-+|+-
T Consensus 209 gl~e~l~~~lg~~-----v~---~~~~P~~~va~Gaa 237 (239)
T TIGR02529 209 GFADVFEKQLGLN-----VI---KPQHPLYVTPLGIA 237 (239)
T ss_pred hHHHHHHHHhCCC-----cc---cCCCCCeehhheee
Confidence 9999999998541 11 12455566666654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.73 E-value=6.4e-16 Score=138.15 Aligned_cols=220 Identities=19% Similarity=0.213 Sum_probs=157.1
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHHHH
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 84 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~l~ 84 (347)
-.++||+||..+|+=.+ +..+. .++ +++ ....+++.|.+.|++...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~-----~~~-------------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQ-----PVA-------------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCC-----EEE-------------------EEe---------ccccccCCCEEeeHHHHH
Confidence 46899999999997543 33222 111 111 123488999999999999
Q ss_pred HHHHHHcc---cccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCCCce
Q 019039 85 QVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVT 161 (347)
Q Consensus 85 ~~~~~~~~---~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t 161 (347)
..++++.. +.++.+ -..++++.|...+...|..+. .+.+..|++-..++.++.+++.+.+...++|||+|+++|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 99998874 233443 356777888887777777666 667889999999999999999988877889999999999
Q ss_pred EEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeee
Q 019039 162 HVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (347)
Q Consensus 162 ~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (347)
+++-+.+|.++.. ...++||+++|+.+.+.+. .+.+.++++|.+... .++
T Consensus 148 ~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~---------i~~~eAE~lK~~~~~-----~~~-------------- 197 (267)
T PRK15080 148 GISILKDGKVVYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEQYKRDPKH-----HKE-------------- 197 (267)
T ss_pred EEEEEECCeEEEE--ecccCchHHHHHHHHHHhC---------CCHHHHHHHHhccCC-----HHH--------------
Confidence 9999999987764 4679999999999987763 346788888865420 000
Q ss_pred eCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 242 TLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 242 ~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
...+.+.+++ .+.+.+.+.+++. -.+.|+||||+|++||+.+.+++.+..
T Consensus 198 -------------~~~ii~~~~~---------~i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 198 -------------IFPVVKPVVE---------KMASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred -------------HHHHHHHHHH---------HHHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 0001111111 2344444444432 336899999999999999999999953
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.66 E-value=4.9e-15 Score=147.64 Aligned_cols=215 Identities=18% Similarity=0.138 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHcc---cccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceE
Q 019039 80 WEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTG 151 (347)
Q Consensus 80 ~~~l~~~~~~~~~---~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tg 151 (347)
.+....+++++.. ..++. .-..++++.|.+.+..+|+.+.+. .+..|+..+.++++|.||++++|. ..-
T Consensus 113 eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~v 189 (621)
T CHL00094 113 EEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNETI 189 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCEE
Confidence 3444555555542 22322 235688899999988888777665 578899999999999999999875 357
Q ss_pred EEEecCCCceEEEEeecCee---cccceeEecccHHHHHHHHHHHHhhc-----CCCCCCCC-----hHHHHHHHHHhcc
Q 019039 152 LVIDSGDGVTHVVPVVDGYS---FPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLC 218 (347)
Q Consensus 152 lVVDiG~~~t~v~pv~dG~~---~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~iK~~~~ 218 (347)
+|+|+|+++++|+.+..+.. +..+....++||+++++.|.+++.++ +..+.... -...++++|+.++
T Consensus 190 lV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS 269 (621)
T CHL00094 190 LVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELS 269 (621)
T ss_pred EEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988854422 22223457899999999998877543 22221100 1123455555543
Q ss_pred ccccchHHHHhhcccCccceeeeeCC--CC---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHH
Q 019039 219 YISYDYKREYQLGLETTILVKNYTLP--DG---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRM 292 (347)
Q Consensus 219 ~v~~~~~~~~~~~~~~~~~~~~~~lp--dg---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~ 292 (347)
... .......+... +| ....+..++| ...+.+++ .+.+.|.+++.+.. +..
T Consensus 270 ~~~------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~--~~~ 326 (621)
T CHL00094 270 NLT------------QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDAK--LDK 326 (621)
T ss_pred CCC------------ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcC--CCh
Confidence 111 00000011000 11 1233444444 23333433 34455566665432 222
Q ss_pred hhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 293 MLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 293 ~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
.-...|+|+||+|++|++.+.|++.+..
T Consensus 327 ~~i~~ViLvGGssriP~v~~~l~~~fg~ 354 (621)
T CHL00094 327 SDIDEVVLVGGSTRIPAIQELVKKLLGK 354 (621)
T ss_pred hhCcEEEEECCccCChHHHHHHHHHhCC
Confidence 3347899999999999999999988753
No 27
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.65 E-value=8.6e-15 Score=146.57 Aligned_cols=216 Identities=18% Similarity=0.137 Sum_probs=133.5
Q ss_pred cHHHHHHHHHHHcc---cccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ce
Q 019039 79 NWEDMGQVWDHAFF---SELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LT 150 (347)
Q Consensus 79 ~~~~l~~~~~~~~~---~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~t 150 (347)
-.+....+|+++.. ..++ ..-..++++.|.+++..+|+.+.+ +.+..|++.+.++++|.||++++|. ..
T Consensus 149 peei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~ 225 (673)
T PLN03184 149 AEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNET 225 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCCE
Confidence 33444556665542 2333 223679999999999888877655 5588899999999999999998864 35
Q ss_pred EEEEecCCCceEEEEeecCee---cccceeEecccHHHHHHHHHHHHhhcC---CCCCCCCh-------HHHHHHHHHhc
Q 019039 151 GLVIDSGDGVTHVVPVVDGYS---FPHLTKRMNVAGRHITSYLVDLLSRRG---YSMNRTAD-------FETVRQIKEKL 217 (347)
Q Consensus 151 glVVDiG~~~t~v~pv~dG~~---~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~~~-------~~~~~~iK~~~ 217 (347)
-+|+|+|+++++|+.+.-+.. +..+.....+||+++++.|.+++.++- .......+ ...+++.|+.+
T Consensus 226 vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~L 305 (673)
T PLN03184 226 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIEL 305 (673)
T ss_pred EEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 799999999999887743321 222233578999999999988875431 11111111 22344455444
Q ss_pred cccccchHHHHhhcccCccceeeeeC--CCC---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHH
Q 019039 218 CYISYDYKREYQLGLETTILVKNYTL--PDG---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNR 291 (347)
Q Consensus 218 ~~v~~~~~~~~~~~~~~~~~~~~~~l--pdg---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r 291 (347)
+... .......+.. .+| ..+.+..+.| ...+.+++ .+.+.|.+++.....+.
T Consensus 306 S~~~------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a~~~~- 363 (673)
T PLN03184 306 SSLT------------QTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDAKLSF- 363 (673)
T ss_pred CCCC------------cceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCh-
Confidence 3211 0000111111 112 1234555544 23444444 35566666666544322
Q ss_pred HhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 292 MMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 292 ~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
.-...|+|+||+|++|.+.++|++.+..
T Consensus 364 -~dId~ViLvGGssriP~V~~~i~~~fg~ 391 (673)
T PLN03184 364 -KDIDEVILVGGSTRIPAVQELVKKLTGK 391 (673)
T ss_pred -hHccEEEEECCccccHHHHHHHHHHhCC
Confidence 2237899999999999999999988753
No 28
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.64 E-value=1.2e-14 Score=143.31 Aligned_cols=183 Identities=18% Similarity=0.257 Sum_probs=125.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCe-ec
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGY-SF 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~-~~ 172 (347)
-..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|. -+
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999998887777766 678899999999999999999875 3469999999999988774 442 22
Q ss_pred ccceeEecccHHHHHHHHHHHHhhcCCCCCCC-ChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCCCCceEEe
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRRGYSMNRT-ADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKV 251 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i 251 (347)
..+.....+||+++++.|.+.+..+- ..... .....+++.|+.++.-. .+. ...+.+
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------------------~~~---~~~~~i 277 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------------------SFN---NDNISI 277 (595)
T ss_pred EEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc------------------ccc---cceEEE
Confidence 22223568999999999999887652 11111 12234555665543211 011 114566
Q ss_pred CCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHh
Q 019039 252 GTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELF 319 (347)
Q Consensus 252 ~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~ 319 (347)
+.+.| .+.+.+|+ .+.+.+.+++.+.. ..-.+.|+|+||+|++|.+.+.|++.+.
T Consensus 278 tr~efe~l~~~l~~---------~~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~ 333 (595)
T PRK01433 278 NKQTLEQLILPLVE---------RTINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFK 333 (595)
T ss_pred cHHHHHHHHHHHHH---------HHHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhC
Confidence 65555 34444555 35566666666554 1224789999999999999999998774
No 29
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.64 E-value=1.6e-14 Score=143.15 Aligned_cols=191 Identities=19% Similarity=0.181 Sum_probs=124.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCee-c
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (347)
-..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|.. +
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 35799999999999888887666 588999999999999999988763 4579999999999998774 3321 2
Q ss_pred ccceeEecccHHHHHHHHHHHHhhc-CCCCCCCChHHH-------HHHHHHhccccccchHHHHhhcccCccceeeeeCC
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRR-GYSMNRTADFET-------VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP 244 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-~~~~~~~~~~~~-------~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 244 (347)
..+.....+||+++++.|.+.+.++ +... ..+... ++++|+.++.- ......+..
T Consensus 208 la~~gd~~lGG~d~D~~l~~~l~~~~~~~~--~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~- 270 (599)
T TIGR01991 208 LATGGDSALGGDDFDHALAKWILKQLGISA--DLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL- 270 (599)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-
Confidence 2223346899999999999988654 2221 122222 33333333210 111112222
Q ss_pred CCc--eEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 245 DGR--VIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 245 dg~--~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
+|. .+.++.+.| .+.+.+++ .+.+.|.+++.+... ...-...|+|+||+|++|++.+++++.+..
T Consensus 271 ~g~~~~~~itr~efe~l~~~ll~---------~i~~~i~~~L~~a~~--~~~~id~ViLvGGssriP~V~~~l~~~f~~ 338 (599)
T TIGR01991 271 DGKDFKGKLTRDEFEALIQPLVQ---------KTLSICRRALRDAGL--SVEEIKGVVLVGGSTRMPLVRRAVAELFGQ 338 (599)
T ss_pred CCcEEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--ChhhCCEEEEECCcCCChHHHHHHHHHhCC
Confidence 232 344554444 23444444 355666666655322 223347899999999999999999988753
No 30
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.63 E-value=7e-15 Score=147.00 Aligned_cols=195 Identities=17% Similarity=0.201 Sum_probs=124.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC------ceEEEEecCCCceEEEEee--cCe-e
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGY-S 171 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~-~ 171 (347)
-..++++.|.+++..+|+.+.+ +.+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|. .
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 3569999999999888887766 4578899999999999999998875 3469999999999987663 232 2
Q ss_pred cccceeEecccHHHHHHHHHHHHhhc-----CCCCCCCC-----hHHHHHHHHHhccccccchHHHHhhcccCccceeee
Q 019039 172 FPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTA-----DFETVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (347)
Q Consensus 172 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (347)
+..+.....+||+++++.|.+++.++ +..+.... -...+++.|+.++.-. .......+
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~------------~~~i~i~~ 279 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML------------TTSINLPF 279 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEee
Confidence 22333456899999999998877543 22221110 0123444444433110 00001111
Q ss_pred eCCC-----CceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHH
Q 019039 242 TLPD-----GRVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYY 315 (347)
Q Consensus 242 ~lpd-----g~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~ 315 (347)
...| ...+.++.+.| ...+.+|+ .+.+.+.+++.+.. +...-...|+|+||+|++|.++++|+
T Consensus 280 ~~~d~~~~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~ 348 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKFEELTKDLVE---------ATIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQ 348 (653)
T ss_pred eccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHH
Confidence 1111 12345555544 23344444 35566666666543 22334578999999999999999999
Q ss_pred HHHh
Q 019039 316 VELF 319 (347)
Q Consensus 316 ~eL~ 319 (347)
+.+.
T Consensus 349 ~~f~ 352 (653)
T PRK13411 349 KFFG 352 (653)
T ss_pred HHcC
Confidence 8875
No 31
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.63 E-value=8.7e-15 Score=146.41 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=125.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-------ceEEEEecCCCceEEEEee--cCee
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPVV--DGYS 171 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~~ 171 (347)
-..++++.|.+++..+|+.+.+ +.+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 3579999999999888777665 5588899999999999999998864 4679999999999987764 4432
Q ss_pred -cccceeEecccHHHHHHHHHHHHhhcC----CCCCCCCh-------HHHHHHHHHhccccccchHHHHhhcccCcccee
Q 019039 172 -FPHLTKRMNVAGRHITSYLVDLLSRRG----YSMNRTAD-------FETVRQIKEKLCYISYDYKREYQLGLETTILVK 239 (347)
Q Consensus 172 -~~~~~~~~~~GG~~l~~~l~~~l~~~~----~~~~~~~~-------~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~ 239 (347)
+..+.....+||+++++.|.+++.+.- .......+ ...++++|+.++. ....
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~----------------~~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSS----------------STQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCC----------------CceE
Confidence 222233468999999999988775421 01111111 1234444444331 1111
Q ss_pred eeeC---CCC--ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHH
Q 019039 240 NYTL---PDG--RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSR 313 (347)
Q Consensus 240 ~~~l---pdg--~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~er 313 (347)
.+.+ -++ ..+.+..+.| ...+.+|+ .+.+.|.+++.+...+ ..-...|+|+||+|++|.+.++
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 2222 123 2345555555 24444554 3556677777655432 2234789999999999999999
Q ss_pred HHHHHh
Q 019039 314 YYVELF 319 (347)
Q Consensus 314 l~~eL~ 319 (347)
|++.+.
T Consensus 352 i~~~f~ 357 (653)
T PTZ00009 352 IKDFFN 357 (653)
T ss_pred HHHHhC
Confidence 998874
No 32
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.63 E-value=1e-14 Score=145.12 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=125.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCee-c
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (347)
-..++++.|.+++..+|+.+.+ ..+..|+..+.++++|.||++++|. ..-+|+|+|+++++|+-+. +|.. +
T Consensus 160 v~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 3568999999998888877655 4578899999999999999999874 4579999999999998875 5533 2
Q ss_pred ccceeEecccHHHHHHHHHHHHhhcC---CCCCCCChH-------HHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRRG---YSMNRTADF-------ETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~~~~-------~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
..+.....+||+++++.|.+.+.++- +.+....+. ..+++.|+.++... .......+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~------------~~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAM------------ETEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCC------------ceEEEEeee
Confidence 33334579999999999988775421 111111111 23455554443211 000111111
Q ss_pred CC--CC---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHH
Q 019039 243 LP--DG---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYV 316 (347)
Q Consensus 243 lp--dg---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~ 316 (347)
.. || ..+.++.+.| .+.+.+|+ .+.+.+.+++.+... ...-...|+|+||+|++|++++.+++
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~--~~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGV--ELKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--ChhhCCEEEEECCcccChHHHHHHHH
Confidence 11 22 2355655555 34444544 355556666654332 22334779999999999999999998
Q ss_pred HHhh
Q 019039 317 ELFF 320 (347)
Q Consensus 317 eL~~ 320 (347)
.+..
T Consensus 376 ~fg~ 379 (657)
T PTZ00186 376 FFQK 379 (657)
T ss_pred HhCC
Confidence 8754
No 33
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.63 E-value=8.8e-15 Score=146.40 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=126.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCee-c
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (347)
-..++++.|.+++..+|+.+.+ +.+..|++.+.++++|.||++++|. ..-+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 4679999999999888887765 4578899999999999999999875 3579999999999998774 4533 2
Q ss_pred ccceeEecccHHHHHHHHHHHHhhcC---CCCCCCChH-------HHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRRG---YSMNRTADF-------ETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~~~~-------~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
..+.....+||+++|+.|.+.+..+- ..++...+. ..++.+|+.++.-. .......+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~------------~~~i~i~~~ 320 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT------------QTEINLPFI 320 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC------------ceEEEEEee
Confidence 22334568999999999988876431 111111111 23444555443110 000011111
Q ss_pred CCC--C---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHH
Q 019039 243 LPD--G---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYV 316 (347)
Q Consensus 243 lpd--g---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~ 316 (347)
..| | ..+.++.+.| ...+.+|. .+.+.+.+++.+... ...-...|+|+||+|++|+++++|++
T Consensus 321 ~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~ 389 (663)
T PTZ00400 321 TADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAGV--KKDELNDVILVGGMTRMPKVSETVKK 389 (663)
T ss_pred ccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--CHHHCcEEEEECCccCChHHHHHHHH
Confidence 111 1 1345555544 24444444 356666677665432 22335789999999999999999998
Q ss_pred HHhh
Q 019039 317 ELFF 320 (347)
Q Consensus 317 eL~~ 320 (347)
.+..
T Consensus 390 ~f~~ 393 (663)
T PTZ00400 390 IFGK 393 (663)
T ss_pred HhCC
Confidence 8753
No 34
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.62 E-value=1.2e-14 Score=145.18 Aligned_cols=194 Identities=19% Similarity=0.222 Sum_probs=124.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEeecC---eec
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDG---YSF 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG---~~~ 172 (347)
-..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++++.+.-+ +.+
T Consensus 133 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v 211 (627)
T PRK00290 133 VTEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEV 211 (627)
T ss_pred CceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEE
Confidence 35689999999998888877654 577899999999999999998864 558999999999998877443 112
Q ss_pred ccceeEecccHHHHHHHHHHHHhhc-----CCCCCCCChH-------HHHHHHHHhccccccchHHHHhhcccCccceee
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTADF-------ETVRQIKEKLCYISYDYKREYQLGLETTILVKN 240 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~-------~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (347)
..+....++||+++++.|.+++.++ +.++. .+. ..++++|+.++.-. .......
T Consensus 212 la~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~--~~~~~~~rL~~~ae~aK~~LS~~~------------~~~i~i~ 277 (627)
T PRK00290 212 LSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLR--KDKMALQRLKEAAEKAKIELSSAQ------------QTEINLP 277 (627)
T ss_pred EEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcc--cCHHHHHHHHHHHHHHHHHcCCCC------------eEEEEEe
Confidence 2223356899999999998877543 22221 111 23444554443110 0000111
Q ss_pred eeCCC--C---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHH
Q 019039 241 YTLPD--G---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRY 314 (347)
Q Consensus 241 ~~lpd--g---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl 314 (347)
+...| | ..+.++.+.| ...+.+++ .+.+.|.+++.+.... ..-...|+|+||+|++|.+.++|
T Consensus 278 ~~~~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a~~~--~~~id~ViLvGGssriP~v~~~l 346 (627)
T PRK00290 278 FITADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDAGLS--VSDIDEVILVGGSTRMPAVQELV 346 (627)
T ss_pred ecccCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--hhhCcEEEEECCcCCChHHHHHH
Confidence 11111 1 2344555544 23344444 3556666666654322 22347899999999999999999
Q ss_pred HHHHhh
Q 019039 315 YVELFF 320 (347)
Q Consensus 315 ~~eL~~ 320 (347)
++.+..
T Consensus 347 ~~~fg~ 352 (627)
T PRK00290 347 KEFFGK 352 (627)
T ss_pred HHHhCC
Confidence 988743
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.60 E-value=4.7e-14 Score=140.18 Aligned_cols=190 Identities=16% Similarity=0.101 Sum_probs=120.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCee-c
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (347)
-..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||++++|. ..-+|+|+|+++++|+.+. +|.. +
T Consensus 149 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 35789999999998888777554 688999999999999999988764 3469999999999988774 3321 2
Q ss_pred ccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHH-------HHHHHHhccccccchHHHHhhcccCccceeeeeCCC
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFET-------VRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPD 245 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~-------~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd 245 (347)
..+.....+||+++++.|.+.+.++. ......+... ++..|+.++. .....+.+++
T Consensus 228 lat~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~~L~~~ae~aK~~LS~----------------~~~~~i~i~~ 290 (616)
T PRK05183 228 LATGGDSALGGDDFDHLLADWILEQA-GLSPRLDPEDQRLLLDAARAAKEALSD----------------ADSVEVSVAL 290 (616)
T ss_pred EEecCCCCcCHHHHHHHHHHHHHHHc-CCCcCCCHHHHHHHHHHHHHHHHhcCC----------------CceEEEEEec
Confidence 22334578999999999998886542 1111122222 3333333321 1111222222
Q ss_pred CceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 246 GRVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 246 g~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
-. -.++.+.| .+.+.++. .+.+.+.+++.+... ...-...|+|+||+|++|.+.++|++.+..
T Consensus 291 ~~-~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~ 354 (616)
T PRK05183 291 WQ-GEITREQFNALIAPLVK---------RTLLACRRALRDAGV--EADEVKEVVMVGGSTRVPLVREAVGEFFGR 354 (616)
T ss_pred CC-CeEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--CcccCCEEEEECCcccChHHHHHHHHHhcc
Confidence 11 11433333 23333333 355555565554321 122347799999999999999999987753
No 36
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.60 E-value=2.1e-14 Score=142.87 Aligned_cols=194 Identities=17% Similarity=0.188 Sum_probs=122.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC------ceEEEEecCCCceEEEEeec--Ce-ec
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVVD--GY-SF 172 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~d--G~-~~ 172 (347)
..++++.|.+++..+|+.+.+ +.+..|++.+.++++|.||++++|. .+-+|+|+|+++++++.+.- |. .+
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 568999999999998888766 4577899999999999999998764 35699999999999887742 31 12
Q ss_pred ccceeEecccHHHHHHHHHHHHhhcC---CCCCCCChH-------HHHHHHHHhccccccchHHHHhhcccCccceeeee
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRRG---YSMNRTADF-------ETVRQIKEKLCYISYDYKREYQLGLETTILVKNYT 242 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~~~~-------~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (347)
..+.....+||+++|+.|.+++..+- +.+....+. ..++++|+.++... .......+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~------------~~~i~i~~~ 277 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL------------STEINLPFI 277 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC------------ceEEEeeec
Confidence 22233568999999999988775321 111111111 23445555443110 000011111
Q ss_pred CCC--C---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHH
Q 019039 243 LPD--G---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYV 316 (347)
Q Consensus 243 lpd--g---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~ 316 (347)
..| | ..+.++.+.| ...+.+++ .+.+.+.+++.+... ...-...|+|+||+|++|++.+.+++
T Consensus 278 ~~~~~g~~~~~~~itr~~fe~l~~~l~~---------~~~~~i~~~l~~a~~--~~~~i~~V~LvGGssriP~v~~~i~~ 346 (595)
T TIGR02350 278 TADASGPKHLEMTLTRAKFEELTADLVE---------RTKEPVRQALKDAGL--SASDIDEVILVGGSTRIPAVQELVKD 346 (595)
T ss_pred ccCCCCCeeEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--CHhHCcEEEEECCcccChHHHHHHHH
Confidence 111 1 2344555544 23444444 456666666665432 22334789999999999999999998
Q ss_pred HHh
Q 019039 317 ELF 319 (347)
Q Consensus 317 eL~ 319 (347)
.+.
T Consensus 347 ~f~ 349 (595)
T TIGR02350 347 FFG 349 (595)
T ss_pred HhC
Confidence 775
No 37
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.59 E-value=4.4e-14 Score=141.11 Aligned_cols=192 Identities=20% Similarity=0.219 Sum_probs=122.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEee--cCe-ecc
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVV--DGY-SFP 173 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~--dG~-~~~ 173 (347)
..++++.|.+++..+|+.+.+. .+..|++.+.++++|.||++++|. .+-+|+|+|+++++|+.+. +|. .+.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 5699999999999988876655 488899999999999999999875 4579999999999988775 332 222
Q ss_pred cceeEecccHHHHHHHHHHHHhhc-----CCCCCCCChHH-------HHHHHHHhccccccchHHHHhhcccCccceeee
Q 019039 174 HLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTADFE-------TVRQIKEKLCYISYDYKREYQLGLETTILVKNY 241 (347)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~~-------~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (347)
.+.....+||+++++.|.+.+..+ +..+. .+.. .++++|+.++... .......+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~--~~~~a~~rL~~~aEkaK~~LS~~~------------~~~i~i~~ 280 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLR--RDRQALQRLTEAAEKAKIELSGVS------------VTDISLPF 280 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcc--cCHHHHHHHHHHHHHHHHhcCCCC------------ceEEEEee
Confidence 233456899999999998777543 22211 1111 3344444432111 00001111
Q ss_pred eCC--CC---ceEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHH
Q 019039 242 TLP--DG---RVIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYY 315 (347)
Q Consensus 242 ~lp--dg---~~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~ 315 (347)
... +| ....+..+.| ..++.+++ .+.+.|.+++.+.. +...-...|+|+||+|++|.+.+.++
T Consensus 281 ~~~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~ag--~~~~dId~VvLVGGssRiP~V~~~l~ 349 (668)
T PRK13410 281 ITATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDAG--LSPEDIDEVVLVGGSTRMPMVQQLVR 349 (668)
T ss_pred eecCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcC--CChhhCcEEEEECCccccHHHHHHHH
Confidence 111 11 1234554444 23444444 35566666665432 22233468999999999999999999
Q ss_pred HHHh
Q 019039 316 VELF 319 (347)
Q Consensus 316 ~eL~ 319 (347)
+.+.
T Consensus 350 ~~fg 353 (668)
T PRK13410 350 TLIP 353 (668)
T ss_pred HHcC
Confidence 8765
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.50 E-value=3.4e-13 Score=128.68 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=67.9
Q ss_pred CCeEEEEcCCCCC-----HHHHHH--HHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEeec
Q 019039 101 ECKILLTDPPLNP-----AKNREK--MVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVD 168 (347)
Q Consensus 101 ~~~v~l~e~~~~~-----~~~r~~--l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~d 168 (347)
-..++++.|.... ..+|+. .+.-..+..|++.+.++++|.+|++++|. ..-+|+|+|+++++++-|--
T Consensus 149 v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~ 228 (450)
T PRK11678 149 ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLM 228 (450)
T ss_pred CCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEe
Confidence 3568899998765 556543 35667789999999999999999999873 45799999999998887742
Q ss_pred C-----------eecccceeEecccHHHHHHHHH
Q 019039 169 G-----------YSFPHLTKRMNVAGRHITSYLV 191 (347)
Q Consensus 169 G-----------~~~~~~~~~~~~GG~~l~~~l~ 191 (347)
+ .++-++ . ..+||+++|+.|.
T Consensus 229 ~~~~~~~~~r~~~vla~~-G-~~lGG~DfD~~L~ 260 (450)
T PRK11678 229 GPSWRGRADRSASLLGHS-G-QRIGGNDLDIALA 260 (450)
T ss_pred cCcccccCCcceeEEecC-C-CCCChHHHHHHHH
Confidence 2 122222 1 3699999999986
No 39
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.43 E-value=7.8e-12 Score=117.54 Aligned_cols=175 Identities=20% Similarity=0.202 Sum_probs=114.2
Q ss_pred CHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEeecCeecccceeEecccHHHHH
Q 019039 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (347)
Q Consensus 113 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (347)
+++..+.+.+ +++..|+.-..+..+|+++++++.. ...+|||+|+++|+++.+.+|.... ....++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 3444444444 4578899999999999999988643 2469999999999999999998665 356899999999
Q ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCC---CCceEEeCCccc-ccccccc
Q 019039 188 SYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP---DGRVIKVGTERF-QAPEALF 263 (347)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp---dg~~i~i~~~~~-~~~E~lF 263 (347)
+.+.+.+. ...+.++++|.+++....+... ....+.++ ++....++.+.+ .+.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLEG----------PDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCCC----------CCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99887653 3578899999988765322100 00111221 122233332211 1112222
Q ss_pred CCCCCCCCCCCHHHHHH-HHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 264 TPELIDVEGDGMADMVF-RCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 264 ~p~~~~~~~~~l~~~i~-~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
+ .+.+.+. +.+++.+.+ ..+-+.|+||||+|++||+.+++++.+..
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 2 2444554 555544332 23323499999999999999999999865
No 40
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.42 E-value=1.8e-11 Score=116.70 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=116.4
Q ss_pred CHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-----ceEEEEecCCCceEEEEeecCeecccceeEecccHHHHH
Q 019039 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (347)
Q Consensus 113 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (347)
+....+.+.+ +++..|+.-..++.+|++++++... ...+|||+|+++|+++-+.+|.++.. ...++||+++|
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHH
Confidence 3444555555 6688999999999999999998753 34699999999999999999987753 56899999999
Q ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCC--CC-ceEEeCCccccccccccC
Q 019039 188 SYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP--DG-RVIKVGTERFQAPEALFT 264 (347)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp--dg-~~i~i~~~~~~~~E~lF~ 264 (347)
+.+...+. ...+.++++|.++.....+... ....+.+| ++ ....++... ..+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~----------~~~~i~v~~~~~~~~~~i~~~~--l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIVG----------KDESVEVPSVGGRPPRSLQRQT--LAEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccCC----------CCceeEecCCCCCCCeEEcHHH--HHHHHHH
Confidence 99987664 3578999999886643322110 01112222 11 111221111 1111110
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCHHHHH-----hhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 265 PELIDVEGDGMADMVFRCIQEMDIDNRM-----MLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 265 p~~~~~~~~~l~~~i~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
....|-+.|.+++..++.+++. .+.+.|+||||+|++||+.+.+++.+..
T Consensus 300 ------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~ 354 (420)
T PRK09472 300 ------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT 354 (420)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC
Confidence 0002334555666656555543 3456699999999999999999988863
No 41
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.37 E-value=3.5e-12 Score=127.66 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=120.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC------ceEEEEecCCCceEEEEee--cCee-c
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVPVV--DGYS-F 172 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~pv~--dG~~-~ 172 (347)
..++++.|..++..+|+.+.+.+ +..|++.+.++++|.||+++++. .+-+|+|+|+++++++.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999998888777765 67888889999999999987753 4679999999999888774 4432 2
Q ss_pred ccceeEecccHHHHHHHHHHHHhhc-----CCCCCCCChH-------HHHHHHHHhccccccchHHHHhhcccCcc-cee
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTADF-------ETVRQIKEKLCYISYDYKREYQLGLETTI-LVK 239 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~-------~~~~~iK~~~~~v~~~~~~~~~~~~~~~~-~~~ 239 (347)
........+||+++++.|.+.+.++ +.+.. .+. ..++.+|+.++.-. .... ...
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~--~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~~~~~~ 281 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLR--ENPRAMARLLEAAEKAKEQLSSND-----------NTEITISI 281 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GT--CSHHHHHHHHHHHHHHHHHTTTSS-----------SSEEEEEE
T ss_pred cccccccccccceecceeecccccccccccccccc--cccccccccccccccccccccccc-----------cccccccc
Confidence 2333457899999999999888643 22211 111 12334444432210 0000 011
Q ss_pred eeeCCCCc--eEEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHH
Q 019039 240 NYTLPDGR--VIKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYV 316 (347)
Q Consensus 240 ~~~lpdg~--~i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~ 316 (347)
.....+|. .+.+..+.| ...+.+++ .+.++|.+++...... ..-...|+|+||+|++|.+.+.|++
T Consensus 282 ~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~l~~ 350 (602)
T PF00012_consen 282 ESLYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGLK--KEDIDSVLLVGGSSRIPYVQEALKE 350 (602)
T ss_dssp EEEETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHH
T ss_pred ccccccccccccccccceeccccccccc---------cccccccccccccccc--ccccceeEEecCcccchhhhhhhhh
Confidence 11112243 344554444 34444555 3667777777655432 2334679999999999999999988
Q ss_pred HHh
Q 019039 317 ELF 319 (347)
Q Consensus 317 eL~ 319 (347)
.+.
T Consensus 351 ~f~ 353 (602)
T PF00012_consen 351 LFG 353 (602)
T ss_dssp HTT
T ss_pred ccc
Confidence 875
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-11 Score=120.73 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=120.4
Q ss_pred CCeEEEeCCCceEEEeecCCC-CCCcccccceeecCcchhhhhhhccCC-ceEeccccccc--c----CCceeeccccCC
Q 019039 4 RNVVVCDNGTGYVKCGFAGEN-FPNSVFPCVVGRPMLRYEESLMEQELK-DTIVGAAALDL--R----HQLDVSYPVNNG 75 (347)
Q Consensus 4 ~~~vViD~Gs~~ik~G~ag~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~--~----~~~~~~~p~~~g 75 (347)
..+|-||+||+++-+.+.... .|. ++++..+.+..++... .... +.++|..+... . ....+.+-+-.+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~---f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~ 80 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVA---FSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRG 80 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEE---ECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCC
Confidence 368999999999999998655 454 4455555544444321 1112 57788766541 1 112223333221
Q ss_pred ------------eeecHHHHHHHHHHHcccccCC------CCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeeh
Q 019039 76 ------------IVQNWEDMGQVWDHAFFSELKI------DPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQI 137 (347)
Q Consensus 76 ------------~i~~~~~l~~~~~~~~~~~l~~------~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~ 137 (347)
.... .+++..+++ .+|+- ...-..++++.|.+++..+|+.+.+ ..+..|++.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~---~eeisa~~L-~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~-A~~iaGl~vlrlin 155 (579)
T COG0443 81 SNGLKISVEVDGKKYT---PEEISAMIL-TKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKD-AARIAGLNVLRLIN 155 (579)
T ss_pred CCCCcceeeeCCeeeC---HHHHHHHHH-HHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHH-HHHHcCCCeEEEec
Confidence 1122 223333333 22221 2234779999999998888665555 45779999999999
Q ss_pred hhhHhhhhCCC-----ceEEEEecCCCceEEEEeec--C-eecccceeEecccHHHHHHHHHHHHhhc
Q 019039 138 QAVLTLYAQGL-----LTGLVIDSGDGVTHVVPVVD--G-YSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (347)
Q Consensus 138 ~~~~a~~~~g~-----~tglVVDiG~~~t~v~pv~d--G-~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (347)
+|.||+|++|. ..-+|+|+|+++++++-|-= | +.+..+.....+||+++++.|...+..+
T Consensus 156 EPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 156 EPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred chHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 99999999985 45699999999999888854 3 2334445578999999999998777543
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.28 E-value=1.4e-10 Score=108.49 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=110.9
Q ss_pred HHHHHHHhhcccccCCCeEeeehhhhHhhhhCC-----CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHH
Q 019039 115 KNREKMVETMFEKYNFAGVFIQIQAVLTLYAQG-----LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSY 189 (347)
Q Consensus 115 ~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~ 189 (347)
..-+.+. .++|+.++.-..++-+|++++.+.= ....++||+|+++|+|+.+.+|.+.... ..|+||+++|+.
T Consensus 165 ~~~~Nl~-k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~--~ipvgG~~vT~D 241 (418)
T COG0849 165 NILENLE-KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTG--VIPVGGDHVTKD 241 (418)
T ss_pred HHHHHHH-HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEe--eEeeCccHHHHH
Confidence 3333333 3458888888888889999988763 3568999999999999999999887754 589999999999
Q ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCC--CCce-EEeCCccccccccccCCC
Q 019039 190 LVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP--DGRV-IKVGTERFQAPEALFTPE 266 (347)
Q Consensus 190 l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp--dg~~-i~i~~~~~~~~E~lF~p~ 266 (347)
+...|. .+.+.+|++|.++.....+.. .....+..| ++.. ..+.. ....++.-.
T Consensus 242 Ia~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t~--~~ls~II~a-- 298 (418)
T COG0849 242 IAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVTR--SELSEIIEA-- 298 (418)
T ss_pred HHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhhH--HHHHHHHHh--
Confidence 999886 468999999998765443221 111122221 1111 11110 000000000
Q ss_pred CCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 267 LIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 267 ~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
...-+-+++...+++.-.. ..+.+.|+||||++++||+.|--++-+..
T Consensus 299 ----R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~ 346 (418)
T COG0849 299 ----RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR 346 (418)
T ss_pred ----hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC
Confidence 0001223333444433222 56678899999999999999877766653
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.07 E-value=3.2e-08 Score=92.35 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhC----------C-Cc-eEEEEecCCCceEEEEeecCeecccceeEe
Q 019039 112 NPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ----------G-LL-TGLVIDSGDGVTHVVPVVDGYSFPHLTKRM 179 (347)
Q Consensus 112 ~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-tglVVDiG~~~t~v~pv~dG~~~~~~~~~~ 179 (347)
.+++..+.+.++ |+..|+.-..+..++++.+-+. . .. +.++||+|+++|+++.+.+|.++.. +..
T Consensus 140 ~~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i 216 (348)
T TIGR01175 140 TRKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REV 216 (348)
T ss_pred ecHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEe
Confidence 356666666666 6778877666666666654322 1 22 4899999999999999999988774 578
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCCCCceEEeCCcccccc
Q 019039 180 NVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAP 259 (347)
Q Consensus 180 ~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~ 259 (347)
++||+++++.+.+.+. .+.+.++++|.+..+... ...+ +.
T Consensus 217 ~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~~~-~~~~------------------------------~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLPLL-YDPE------------------------------VL 256 (348)
T ss_pred echHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCCCc-hhHH------------------------------HH
Confidence 9999999999976553 357788888876432110 0000 00
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 260 EALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 260 E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
+..++ .+..-|.+++.-.-........+.|+||||++.++||.+.|++++.-
T Consensus 257 ~~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~ 308 (348)
T TIGR01175 257 RRFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGL 308 (348)
T ss_pred HHHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCC
Confidence 00011 13333444443221111122357799999999999999999999974
No 45
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.02 E-value=2.3e-08 Score=92.78 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=108.3
Q ss_pred CeEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhh-----------hccCCc---eEeccccccccCCceeec
Q 019039 5 NVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLM-----------EQELKD---TIVGAAALDLRHQLDVSY 70 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~-----------~~~~~~---~~~g~~~~~~~~~~~~~~ 70 (347)
.++-||+|-.++|.-+. . ....+|+.++..........+ .-.... |++|+++........-.+
T Consensus 3 ~v~~iDiG~g~tK~~~~-~--~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~~ 79 (344)
T PRK13917 3 YVMALDFGNGFVKGKIN-D--EKFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDTY 79 (344)
T ss_pred eEEEEeccCCeEEEEec-C--CCEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCcc
Confidence 58899999999999654 2 123557766533211100000 001123 778877533211000001
Q ss_pred cccCCeeecHHHHHHHHHHHcccccCCC--CCCCeEEE-E-cCCCC-CHHHHHHHHhhcccc-----------cCCCeEe
Q 019039 71 PVNNGIVQNWEDMGQVWDHAFFSELKID--PPECKILL-T-DPPLN-PAKNREKMVETMFEK-----------YNFAGVF 134 (347)
Q Consensus 71 p~~~g~i~~~~~l~~~~~~~~~~~l~~~--~~~~~v~l-~-e~~~~-~~~~r~~l~e~lfe~-----------~~~~~v~ 134 (347)
-.+ +.. .-+....++..++...+... .....++| | -|... ....++++.+.+-.. ..+..+.
T Consensus 80 ~~~-~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~ 157 (344)
T PRK13917 80 STN-DRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVK 157 (344)
T ss_pred ccc-ccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEE
Confidence 111 122 23456677666653222221 12233333 3 33322 122234555443211 4567899
Q ss_pred eehhhhHhhhhCCC-------------ceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhc
Q 019039 135 IQIQAVLTLYAQGL-------------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (347)
Q Consensus 135 ~~~~~~~a~~~~g~-------------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (347)
+.++++.|++.... ..-+|||+|+.+|+++.+.++.+.......++.|+..+.+.+.+.+..+
T Consensus 158 V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 158 VVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 99999999875422 2459999999999999999999988877779999999999999999544
No 46
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.95 E-value=3e-10 Score=93.36 Aligned_cols=186 Identities=22% Similarity=0.265 Sum_probs=123.1
Q ss_pred cccCCeeecHHH----HHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhC
Q 019039 71 PVNNGIVQNWED----MGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ 146 (347)
Q Consensus 71 p~~~g~i~~~~~----l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~ 146 (347)
.+++|.+.|+-. ++++.+.+ .++|++..... --..||...... .++.--..|..|...++.+++|.++++-.
T Consensus 62 vVRDGiVvdf~eaveiVrrlkd~l-Ek~lGi~~tha--~taiPPGt~~~~-~ri~iNViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 62 VVRDGIVVDFFEAVEIVRRLKDTL-EKQLGIRFTHA--ATAIPPGTEQGD-PRISINVIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhccceEEehhhHHHHHHHHHHHH-HHhhCeEeeec--cccCCCCccCCC-ceEEEEeecccCceeeeecCCchhHHHHh
Confidence 456788877733 33344433 36676643211 111233321111 12222346889999999999999999999
Q ss_pred CCceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHH
Q 019039 147 GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKR 226 (347)
Q Consensus 147 g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~ 226 (347)
+...|.|||+|+++|-|.-+-+|.++..+ .-+.||.+++-.|.-. + .++.+.+++.|...--
T Consensus 138 ~l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLvlAG~---y------gi~~EeAE~~Kr~~k~------- 199 (277)
T COG4820 138 QLDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLVLAGN---Y------GISLEEAEQYKRGHKK------- 199 (277)
T ss_pred ccCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEEEecc---c------CcCHhHHHHhhhcccc-------
Confidence 99999999999999999999999999865 6799999887544321 1 2467888888754210
Q ss_pred HHhhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCC
Q 019039 227 EYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTM 306 (347)
Q Consensus 227 ~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~ 306 (347)
. .|.|......++ .+++++.+-|+..++ ..+.|+||++.
T Consensus 200 ~-------------------------~Eif~~v~PV~e---------KMAeIv~~hie~~~i-------~dl~lvGGac~ 238 (277)
T COG4820 200 G-------------------------EEIFPVVKPVYE---------KMAEIVARHIEGQGI-------TDLWLVGGACM 238 (277)
T ss_pred c-------------------------hhcccchhHHHH---------HHHHHHHHHhccCCC-------cceEEeccccc
Confidence 0 011111111111 466777777776665 34899999999
Q ss_pred CCChHHHHHHHHh
Q 019039 307 YPGLPSRYYVELF 319 (347)
Q Consensus 307 i~G~~erl~~eL~ 319 (347)
.||+.+-++++|.
T Consensus 239 ~~g~e~~Fe~~l~ 251 (277)
T COG4820 239 QPGVEELFEKQLA 251 (277)
T ss_pred CccHHHHHHHHhc
Confidence 9999999999994
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.93 E-value=4.4e-08 Score=90.18 Aligned_cols=185 Identities=13% Similarity=-0.012 Sum_probs=114.1
Q ss_pred EeCCCceEEEeecC-CCCC-CcccccceeecCcchhhhhh----------hccCCceEeccccccccCCceeeccccCCe
Q 019039 9 CDNGTGYVKCGFAG-ENFP-NSVFPCVVGRPMLRYEESLM----------EQELKDTIVGAAALDLRHQLDVSYPVNNGI 76 (347)
Q Consensus 9 iD~Gs~~ik~G~ag-~~~P-~~~~ps~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~ 76 (347)
||+|-.++|+-+.+ +..+ +..|||.++........... ......|++|+.+..... ....+-+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 79999999986642 2222 34788876543221110000 123457788877632211 01111122212
Q ss_pred eecHHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccc--------cCCCeEeeehhhhHhhhhC--
Q 019039 77 VQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEK--------YNFAGVFIQIQAVLTLYAQ-- 146 (347)
Q Consensus 77 i~~~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~--------~~~~~v~~~~~~~~a~~~~-- 146 (347)
. .-+....++.+++. ..+.+ ....+++--|...-...++.+.+.+-.. ..+..+.+.++++.|.+..
T Consensus 81 ~-~~~~~~~L~~~Al~-~~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 T-ETPEYMALLRGALA-LSKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred c-CCHHHHHHHHHHHH-HhcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 1 12456677777763 23322 1223444445444455677777765432 5678899999999887753
Q ss_pred -------CCceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhc
Q 019039 147 -------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRR 197 (347)
Q Consensus 147 -------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (347)
...+.+|||+|+.+|+++.+-++.+........+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234569999999999999888888877776778999999999999999755
No 48
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.91 E-value=7.2e-08 Score=89.61 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHcccccCCCCCC-----------------CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehh--h
Q 019039 79 NWEDMGQVWDHAFFSELKIDPPE-----------------CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQ--A 139 (347)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~-----------------~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~--~ 139 (347)
+.+.++..+++=..+++..+.++ ..|+++ ..+++.-+..+++ |+..|..-..+--+ +
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~---Aa~k~~v~~~~~~-~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLV---AAPKEIVESYVEL-FEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEE---EEEHHHHHHHHHH-HHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEE---EEcHHHHHHHHHH-HHHcCCceEEEeehHHH
Confidence 45667777777766666544322 223332 1233444444443 56666654433333 3
Q ss_pred hHhhhhC---------CCceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHH
Q 019039 140 VLTLYAQ---------GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETV 210 (347)
Q Consensus 140 ~~a~~~~---------g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 210 (347)
++-+|.. ...+-++||+|+..|.++-+.+|.++.. +..++||+++++.+.+.+. .+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~---------i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG---------IDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT-----------HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC---------CCHHHH
Confidence 3333322 1134589999999999999999998864 6789999999999987753 356777
Q ss_pred HHHHHhccccccchHHHHhhcccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHH
Q 019039 211 RQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDN 290 (347)
Q Consensus 211 ~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~ 290 (347)
+++|..... ..+...+ +.+.+++ .|..-|.+++.-.-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~---------~l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLE---------ELAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHhcC
Confidence 777765321 1110000 0011111 24455555554332233
Q ss_pred HHhhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 291 RMMLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 291 r~~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
...-.+.|+||||+|.++|+.+.|+++|.-
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 344557899999999999999999999964
No 49
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.8e-08 Score=94.07 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC----------ceEEEEecCCCceEEEEeecCe
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL----------LTGLVIDSGDGVTHVVPVVDGY 170 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~tglVVDiG~~~t~v~pv~dG~ 170 (347)
-..+++|.|++..+..|+.+++.. +-.|...++++++..+++..+|. +.-++.|+|+++|+++-|.--.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 456999999999999999998875 56788899999999999998874 3459999999999988874211
Q ss_pred ec--------c-----cceeEecccHHHHHHHHHHHHhh
Q 019039 171 SF--------P-----HLTKRMNVAGRHITSYLVDLLSR 196 (347)
Q Consensus 171 ~~--------~-----~~~~~~~~GG~~l~~~l~~~l~~ 196 (347)
+- + ...-...+||..+++.|+++|..
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 11 1 11123578999999999998865
No 50
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=9e-08 Score=92.66 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=115.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC-------ceEEEEecCCCceEEEEee--cCe-
Q 019039 101 ECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL-------LTGLVIDSGDGVTHVVPVV--DGY- 170 (347)
Q Consensus 101 ~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~tglVVDiG~~~t~v~pv~--dG~- 170 (347)
-..+++|.|...+..+|+.+-+. -.-.|++.+.++++|.+|+.++|. .+-+|.|+|+++.+|.++. +|.
T Consensus 143 v~~aviTVPa~F~~~Qr~at~~A-~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~ 221 (620)
T KOG0101|consen 143 VKKAVVTVPAYFNDSQRAATKDA-ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIF 221 (620)
T ss_pred eeeEEEEecCCcCHHHHHHHHHH-HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchh
Confidence 35788999988887777665554 456778999999999999999874 3459999999998888774 342
Q ss_pred ecccceeEecccHHHHHHHHHHHHhhc-----CCCCCCCChHH-------HHHHHHHhccccccchHHHHhhcccCccce
Q 019039 171 SFPHLTKRMNVAGRHITSYLVDLLSRR-----GYSMNRTADFE-------TVRQIKEKLCYISYDYKREYQLGLETTILV 238 (347)
Q Consensus 171 ~~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~~-------~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~ 238 (347)
.+.......++||.++++.|...+... +.++ ..+.. .+++.|+.+.-.. +..-
T Consensus 222 ~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~--~~n~r~l~rLR~a~E~aKr~LS~~~-------------~~~i 286 (620)
T KOG0101|consen 222 EVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDI--GGNARALRRLRTACERAKRTLSSST-------------QASI 286 (620)
T ss_pred hhhhhcccccccchhhhHHHHHHHHHHHHHhhcccc--ccchHHHHHHHHHHHHHHhhhcccc-------------ccee
Confidence 334445568999999988887766432 2111 11222 2333343331110 0000
Q ss_pred eeeeCCCCce--EEeCCccc-cccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHHH
Q 019039 239 KNYTLPDGRV--IKVGTERF-QAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRYY 315 (347)
Q Consensus 239 ~~~~lpdg~~--i~i~~~~~-~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl~ 315 (347)
..-.|-+|.. ..+...|| ..+.-||. ...+.+..+++..- +-+....-|||+||++.+|.+..-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~---------~~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFR---------STLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHH---------HHHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 0001223322 22333444 23344554 23444445554332 22333466999999999999888887
Q ss_pred HHHh
Q 019039 316 VELF 319 (347)
Q Consensus 316 ~eL~ 319 (347)
+=+.
T Consensus 356 d~f~ 359 (620)
T KOG0101|consen 356 DFFN 359 (620)
T ss_pred HHhc
Confidence 6654
No 51
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-07 Score=85.71 Aligned_cols=188 Identities=18% Similarity=0.184 Sum_probs=109.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC------ceEEEEecCCCceEEEE--eecCe-ec
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------LTGLVIDSGDGVTHVVP--VVDGY-SF 172 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~tglVVDiG~~~t~v~p--v~dG~-~~ 172 (347)
...+++.|.+.+..+|+..-.. =--.|...+.++++|.+|+.++|. .+-||.|+|+++.+|.- |-+|. -+
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 4567788888887877765443 334566778899999999998875 56799999999966654 45552 22
Q ss_pred ccceeEecccHHHHHHHHHHHHhh-----cCCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCCCCc
Q 019039 173 PHLTKRMNVAGRHITSYLVDLLSR-----RGYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLPDGR 247 (347)
Q Consensus 173 ~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~ 247 (347)
........+||.++++.+.+.+.+ +|.++ +.+...+.+++++.-... . ..++.....
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv--~kdnkA~~KLrRe~EkAK--------R-aLSsqhq~r------- 313 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDV--RKDNKAVQKLRREVEKAK--------R-ALSSQHQVR------- 313 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCcc--chhhHHHHHHHHHHHHHH--------h-hhccccceE-------
Confidence 333346789999998887666532 23332 345566666665431110 0 001111111
Q ss_pred eEEeCCccccccccccCCCCCCCC-------C--CCHH----HHHHHHHHhCCHHHHHhhhcceEEecCCCCCCChHHHH
Q 019039 248 VIKVGTERFQAPEALFTPELIDVE-------G--DGMA----DMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRY 314 (347)
Q Consensus 248 ~i~i~~~~~~~~E~lF~p~~~~~~-------~--~~l~----~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~~erl 314 (347)
|.| |.||+..+++.. + +.|- .-+.+++. +.++++.-..-|||+||+++||-..+.|
T Consensus 314 -iEI--------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~--Ds~lkKsdideiVLVGGsTrIPKvQqll 382 (663)
T KOG0100|consen 314 -IEI--------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLE--DSDLKKSDIDEIVLVGGSTRIPKVQQLL 382 (663)
T ss_pred -Eee--------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHh--hcCcccccCceEEEecCcccChhHHHHH
Confidence 111 344443322210 0 0011 11222222 4456666667899999999999877777
Q ss_pred HHHHh
Q 019039 315 YVELF 319 (347)
Q Consensus 315 ~~eL~ 319 (347)
+.=+.
T Consensus 383 k~fF~ 387 (663)
T KOG0100|consen 383 KDFFN 387 (663)
T ss_pred HHHhC
Confidence 65553
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.42 E-value=4e-05 Score=68.45 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=77.2
Q ss_pred EEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHhccccccchHHHHhh
Q 019039 151 GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEKLCYISYDYKREYQL 230 (347)
Q Consensus 151 glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 230 (347)
.+|+|+|+..|.+.-+++|+++.. +..++||+.+++.+.+... .+.+.++++|.... .+.|+..+.-.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~---------L~~~~a~~~k~~~~-~P~~y~~~vl~ 262 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS---------LTEEKAEEIKRGGT-LPTDYGSEVLR 262 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC---------CChhHhHHHHhCCC-CCCchhHHHHH
Confidence 469999999999999999999985 6789999999999877654 23556666665432 11122211000
Q ss_pred cccCccceeeeeCCCCceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHHhhhcceEEecCCCCCCCh
Q 019039 231 GLETTILVKNYTLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGL 310 (347)
Q Consensus 231 ~~~~~~~~~~~~lpdg~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIvl~GG~s~i~G~ 310 (347)
. |. ..|.+-|.++|+-.-..--..-...|+|+||++.+.|+
T Consensus 263 ------------------------------~-f~--------~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL 303 (354)
T COG4972 263 ------------------------------P-FL--------GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGL 303 (354)
T ss_pred ------------------------------H-HH--------HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhH
Confidence 0 00 02444455555421000011123679999999999999
Q ss_pred HHHHHHHHhh
Q 019039 311 PSRYYVELFF 320 (347)
Q Consensus 311 ~erl~~eL~~ 320 (347)
.+-+++.|.-
T Consensus 304 ~~~i~qrl~~ 313 (354)
T COG4972 304 AAAIQQRLSI 313 (354)
T ss_pred HHHHHHHhCC
Confidence 9999999864
No 53
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.29 E-value=9.1e-06 Score=74.74 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=91.7
Q ss_pred eEEEeCCCceEEEeecCCCC-CCcccccceeecCcchhhh---h--hhccCCceEeccccccccCCceeeccccCCeeec
Q 019039 6 VVVCDNGTGYVKCGFAGENF-PNSVFPCVVGRPMLRYEES---L--MEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQN 79 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~~-P~~~~ps~~~~~~~~~~~~---~--~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~ 79 (347)
-|.||-|+.++|+.+..+.. -+.+.|+........+... . -..+..++.+++......+.....||+.
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s------ 75 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKIKTSISPNSFRSGWKVSFMGDSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYS------ 75 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-EEEEEEE--EESS----S-SSS---EEESSSSEEEESTTBTTTTSS-HGGGGGS------
T ss_pred eEEEecCCCceeEEEecCCeEEEEeccccccccccccccCCCceeEEEECCEEEEEcCCCCccccccccccccc------
Confidence 47899999999999884332 1223344332222111100 0 0011223333332222111112222222
Q ss_pred HHHHHHHHHHHcccccCCCCCCCeEEEEcCC---CCC--HHHHHHHHh---hcc--------cccCCCeEeeehhhhHhh
Q 019039 80 WEDMGQVWDHAFFSELKIDPPECKILLTDPP---LNP--AKNREKMVE---TMF--------EKYNFAGVFIQIQAVLTL 143 (347)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~---~~~--~~~r~~l~e---~lf--------e~~~~~~v~~~~~~~~a~ 143 (347)
+.-.-...|++ ..-+..+.+-.+++.-|. +.. +..++.+.+ -+. +.+.+..+.+.|++++|.
T Consensus 76 -~~n~~av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~ 153 (318)
T PF06406_consen 76 -DLNLVAVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAV 153 (318)
T ss_dssp -HHHHHHHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHH
T ss_pred -hhhHHHHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHH
Confidence 11123456666 445666666667777662 221 111222321 121 245577999999999998
Q ss_pred hhC-----CCceEEEEecCCCceEEEEeecCeecccc-eeEecccHHHHHHHHHHHHhhc
Q 019039 144 YAQ-----GLLTGLVIDSGDGVTHVVPVVDGYSFPHL-TKRMNVAGRHITSYLVDLLSRR 197 (347)
Q Consensus 144 ~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~~-~~~~~~GG~~l~~~l~~~l~~~ 197 (347)
|.. ...+-+|||+|+.+|+++.|.++....+. ....++|-..+.+.+.+.|...
T Consensus 154 ~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 154 FDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp HHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred HHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 874 24678999999999999999876554433 3356889999999999988763
No 54
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.5e-05 Score=74.80 Aligned_cols=96 Identities=15% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCC------------ceEEEEecCCCceEEEEee
Q 019039 100 PECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGL------------LTGLVIDSGDGVTHVVPVV 167 (347)
Q Consensus 100 ~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~------------~tglVVDiG~~~t~v~pv~ 167 (347)
.-.+++|..|.+.+..+|..+++.. ...|+.-+.++++..+++.++|. .+-+-||+||+.++++...
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4567999999999999999999886 66788899999999999998874 3468899999997776654
Q ss_pred --cCe--ecccceeEecccHHHHHHHHHHHHhhc
Q 019039 168 --DGY--SFPHLTKRMNVAGRHITSYLVDLLSRR 197 (347)
Q Consensus 168 --dG~--~~~~~~~~~~~GG~~l~~~l~~~l~~~ 197 (347)
.|. ++.+ ...-.+||+++++.|.+.+...
T Consensus 215 F~kG~lkvl~t-a~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 215 FTKGKLKVLAT-AFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eccCcceeeee-ecccccccchHHHHHHHHHHHH
Confidence 342 2333 2345899999999999888654
No 55
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00011 Score=69.59 Aligned_cols=198 Identities=18% Similarity=0.199 Sum_probs=116.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCc-----eEEEEecCCCceEEE--EeecCeec-c
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLL-----TGLVIDSGDGVTHVV--PVVDGYSF-P 173 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~-----tglVVDiG~~~t~v~--pv~dG~~~-~ 173 (347)
...+++.|.++...+|+.. .-+..-++...+..+++|.+|+.++|.. +-.|.|+|+++..|. -+.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRqaT-kdag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQAT-KDAGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHh-HhhhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 4578888888877776654 4445667777888899999999999864 348999999986554 45677433 3
Q ss_pred cceeEecccHHHHHHHHHHHHhhc---CCCCCCCChHHHHHHHHHhccccccchHHHHhhcccCccceeeeeCC----CC
Q 019039 174 HLTKRMNVAGRHITSYLVDLLSRR---GYSMNRTADFETVRQIKEKLCYISYDYKREYQLGLETTILVKNYTLP----DG 246 (347)
Q Consensus 174 ~~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----dg 246 (347)
..-....+||++++.++..++-.. +..+....+...++.+++.. |+.+...++.......+| |.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa---------EkaKielSs~~~tei~lp~iTada 310 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA---------EKAKIELSSRQQTEINLPFITADA 310 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH---------HhhhhhhhhcccceeccceeeccC
Confidence 333467899999999998887432 22233334556666666532 111111111111122222 21
Q ss_pred ---ceEEeCCccccccccccCCCCCCCCCCCHHHHHHHHHHhCCHHHHH-----hhhcceEEecCCCCCCChHHHHHHHH
Q 019039 247 ---RVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRM-----MLYQHIVLSGGSTMYPGLPSRYYVEL 318 (347)
Q Consensus 247 ---~~i~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~r~-----~l~~nIvl~GG~s~i~G~~erl~~eL 318 (347)
+.+.+.-.|-. |. .-+..+|.+.|.-|-.++|. .=.+-|+|+||.+.+|-..+.+. |+
T Consensus 311 ~gpkh~~i~~tr~e-----fe--------~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~-e~ 376 (640)
T KOG0102|consen 311 SGPKHLNIELTRGE-----FE--------ELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVK-EL 376 (640)
T ss_pred CCCeeEEEeecHHH-----HH--------HhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHH-HH
Confidence 23333222211 11 12445666666555444442 33356999999999998877776 44
Q ss_pred hhcCC
Q 019039 319 FFASH 323 (347)
Q Consensus 319 ~~~~~ 323 (347)
-..-|
T Consensus 377 fgk~p 381 (640)
T KOG0102|consen 377 FGKGP 381 (640)
T ss_pred hCCCC
Confidence 33334
No 56
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.75 E-value=0.00017 Score=68.07 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=71.5
Q ss_pred eeccccCCeeecHHHHHHHHHHHcccccCCCCC---CCeEEEEcCCCCCHHHHHHHHhhc---ccccCCCeEeeehhhhH
Q 019039 68 VSYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETM---FEKYNFAGVFIQIQAVL 141 (347)
Q Consensus 68 ~~~p~~~g~i~~~~~l~~~~~~~~~~~l~~~~~---~~~v~l~e~~~~~~~~r~~l~e~l---fe~~~~~~v~~~~~~~~ 141 (347)
+..|+......|-+.++++.+.-| +.-++.++ ....+++-. ....+.-++.++.+ ...|=|...-+--+.++
T Consensus 53 ~fTPl~~~~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~-~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iv 130 (475)
T PRK10719 53 YFTPLLKQGEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGE-TARKENAREVVMALSGSAGDFVVATAGPDLESII 130 (475)
T ss_pred eecCCCCCccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEec-hhHHHHHHHHHHHhcccccceeeeccCccHHHhh
Confidence 345887777779999999999998 77777765 233444433 33233333333321 01111111111112222
Q ss_pred hhhhCC--------CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHH
Q 019039 142 TLYAQG--------LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSY 189 (347)
Q Consensus 142 a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~ 189 (347)
+.+++| ....++||+|+++|+++.+.+|.++.. ...++||+++++.
T Consensus 131 a~~ASg~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 131 AGKGAGAQTLSEERNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred hHHHhhHHHhhhhccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 233332 245699999999999999999998775 4589999977654
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.52 E-value=0.01 Score=52.57 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecCC
Q 019039 79 NWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGD 158 (347)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~ 158 (347)
.|+.+.+.++.++ +..+.++.+-.-+.+..... .+.- |-. ....-+...+..+.+-... ...|||+|+
T Consensus 33 ~~~~~~~~l~~~~-~~~~~~~~~i~~i~~Tg~~~------~~v~--~~~--~~~~ei~~~~~g~~~~~~~-~~~vidiGg 100 (248)
T TIGR00241 33 VIEETARAILEAL-KEAGIGLEPIDKIVATGYGR------HKVG--FAD--KIVTEISCHGKGANYLAPE-ARGVIDIGG 100 (248)
T ss_pred CHHHHHHHHHHHH-HHcCCChhheeEEEEECCCc------cccc--ccC--CceEEhhHHHHHHHHHCCC-CCEEEEecC
Confidence 4777777777777 56665544333222222111 1110 111 1111122222223333333 345999999
Q ss_pred CceEEEEeecCeeccc-ceeEecccHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 019039 159 GVTHVVPVVDGYSFPH-LTKRMNVAGRHITSYLVDLLSRRGYSMNRTADFETVRQIKEK 216 (347)
Q Consensus 159 ~~t~v~pv~dG~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iK~~ 216 (347)
+.|.++-+.+|.+..- ....+.-|+-.+.+.+.+.|. .+.+.+++++.+
T Consensus 101 qd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---------~~~~e~~~~~~~ 150 (248)
T TIGR00241 101 QDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG---------VSVEELGSLAEK 150 (248)
T ss_pred CeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC---------CCHHHHHHHHhc
Confidence 9999999999987621 123467788878877776664 234555555543
No 58
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.34 E-value=0.0039 Score=59.10 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=85.7
Q ss_pred eccccCCeeecHHHHHHHHHHHcccccCCCCC---CCeEEEEcCCCCCHHHHHHHHhhcccccC---CCeEeeehhhhHh
Q 019039 69 SYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVETMFEKYN---FAGVFIQIQAVLT 142 (347)
Q Consensus 69 ~~p~~~g~i~~~~~l~~~~~~~~~~~l~~~~~---~~~v~l~e~~~~~~~~r~~l~e~lfe~~~---~~~v~~~~~~~~a 142 (347)
..|+......|-++++++.+.-| +.-++.++ .-.|++|--..- ++.=+.+.+.|-+..| |..-----++++|
T Consensus 51 fTPl~~~~~ID~~al~~iv~~eY-~~Agi~p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiA 128 (473)
T PF06277_consen 51 FTPLLSQTEIDAEALKEIVEEEY-RKAGITPEDIDTGAVIITGETAR-KENAREVLHALSGFAGDFVVATAGPDLESIIA 128 (473)
T ss_pred ccCCCCCCccCHHHHHHHHHHHH-HHcCCCHHHCccccEEEecchhh-hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHh
Confidence 45888877779999999999998 78888765 356777755333 2333344444433332 1111122366777
Q ss_pred hhhCCC--------ceEEEEecCCCceEEEEeecCeecccceeEecccHH-----------HHHHHHHHHHhhcCCCC
Q 019039 143 LYAQGL--------LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGR-----------HITSYLVDLLSRRGYSM 201 (347)
Q Consensus 143 ~~~~g~--------~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~-----------~l~~~l~~~l~~~~~~~ 201 (347)
..++|. .+-+=+|+|+++|.++-+-+|.++-.+. +++||+ .+..-+..++...+..+
T Consensus 129 gkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 129 GKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred ccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 777762 4456689999999999999999998654 789997 34455566666665543
No 59
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.43 E-value=0.056 Score=50.67 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred hhhcceEEecCCCCCCChHHHHHHHHh
Q 019039 293 MLYQHIVLSGGSTMYPGLPSRYYVELF 319 (347)
Q Consensus 293 ~l~~nIvl~GG~s~i~G~~erl~~eL~ 319 (347)
.+-+.|+++||.++.+|+.+.|++.|.
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~Lg 380 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLLG 380 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHhC
Confidence 344569999999999999999999995
No 60
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=95.95 E-value=0.048 Score=49.79 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=26.0
Q ss_pred CCCceEEEEecCCCceEEEEeecCeeccc
Q 019039 146 QGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
....++|.+|+|+.+|+|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 45788999999999999999999998764
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.92 E-value=0.032 Score=49.19 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=66.6
Q ss_pred CHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCce-----EEEEecCCCceEEEEeecCeecccceeEecccHHHHH
Q 019039 113 PAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLT-----GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHIT 187 (347)
Q Consensus 113 ~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~t-----glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~ 187 (347)
.+-.-+.+++.+=+.++++.-.-.-++-+|..++-.+- -.|+|+|+++|+..-+-....+.. ..+.=.|+.+|
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~--iHlAGAG~mVT 170 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA--IHLAGAGNMVT 170 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE--EEEE-SHHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE--EEecCCchhhH
Confidence 34455788899999999999888999999998875433 378999999999887754433332 23455679999
Q ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHh
Q 019039 188 SYLVDLLSRRGYSMNRTADFETVRQIKEK 216 (347)
Q Consensus 188 ~~l~~~l~~~~~~~~~~~~~~~~~~iK~~ 216 (347)
..+..-|-- .+++++++||+.
T Consensus 171 mlI~sELGl--------~d~~lAE~IKky 191 (332)
T PF08841_consen 171 MLINSELGL--------EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHCT---------S-HHHHHHHHHS
T ss_pred HHHHHhhCC--------CCHHHHHHhhhc
Confidence 888776642 278999999975
No 62
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.65 E-value=0.1 Score=46.99 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.7
Q ss_pred hhhcceEEecCCCCCCChHHHHHHHHhh
Q 019039 293 MLYQHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 293 ~l~~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
.+-..|+++||.+..+|+.+.|+++|..
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~ 265 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI 265 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC
Confidence 4556799999999999999999999964
No 63
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.52 E-value=0.05 Score=49.64 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=54.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcccccCCCeEeeeh---hhhHhhhh----CCCceEEEEecCCCceEEEEeecCeeccc
Q 019039 102 CKILLTDPPLNPAKNREKMVETMFEKYNFAGVFIQI---QAVLTLYA----QGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 102 ~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~---~~~~a~~~----~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
..++-|.. +-.-..++.+++.+.+..|++ +-+++ ++.+...+ ....+++++|+|+++|.++-+.++.+..
T Consensus 73 i~~vaTsa-~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~- 149 (300)
T TIGR03706 73 VRAVATAA-LRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE- 149 (300)
T ss_pred EEEEEcHH-HHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE-
Confidence 33444433 333356677777777766653 23333 33332222 1234579999999999999988887654
Q ss_pred ceeEecccHHHHHHHHH
Q 019039 175 LTKRMNVAGRHITSYLV 191 (347)
Q Consensus 175 ~~~~~~~GG~~l~~~l~ 191 (347)
...+++|.-.+++.+.
T Consensus 150 -~~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 150 -GVSLPLGCVRLTEQFF 165 (300)
T ss_pred -EEEEccceEEhHHhhC
Confidence 3578999988877653
No 64
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=95.51 E-value=0.052 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred CceEEEEecCCCceEEEEeecCe
Q 019039 148 LLTGLVIDSGDGVTHVVPVVDGY 170 (347)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~ 170 (347)
..+++.||+|..+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999996
No 65
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.36 E-value=0.24 Score=43.95 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=31.2
Q ss_pred cceEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeecCCccccccccccc
Q 019039 296 QHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRNLGLHVYSLFLSVF 345 (347)
Q Consensus 296 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~~~~~~~s~w~G~~ 345 (347)
++|+++||.+.-+|+.+.|+++|.... ..+. .+.++.++|.--+||-
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~--~~~~-v~~~~~~q~~gAlGAA 259 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAK--MAVA-AENHPDAIYAGAIGAA 259 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCC--cceE-ecCCCcchHHHHHHHH
Confidence 469999999999999999999996431 1111 2223345555555543
No 66
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=94.98 E-value=0.15 Score=49.90 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=49.7
Q ss_pred CHHHHHHHHhhcccccCCC--eEeeehhhhHhhhhC-----CCceEEEEecCCCceEEEEeecCeecccceeEecccHHH
Q 019039 113 PAKNREKMVETMFEKYNFA--GVFIQIQAVLTLYAQ-----GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRH 185 (347)
Q Consensus 113 ~~~~r~~l~e~lfe~~~~~--~v~~~~~~~~a~~~~-----g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 185 (347)
.-..++.+++.+.+..|++ -+.=..++-++.++. ...+++|+|+|+++|.++-+-+|.+... ..+++|.-.
T Consensus 89 eA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vr 166 (496)
T PRK11031 89 LAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATSL--FSLSMGCVT 166 (496)
T ss_pred cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceeee--eEEeccchH
Confidence 3355667777777766664 233333333333322 1235899999999999999988876653 578999987
Q ss_pred HHHHH
Q 019039 186 ITSYL 190 (347)
Q Consensus 186 l~~~l 190 (347)
+++.+
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 76554
No 67
>PRK10854 exopolyphosphatase; Provisional
Probab=93.83 E-value=0.17 Score=49.74 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=47.6
Q ss_pred CHHHHHHHHhhcccccCCCe--EeeehhhhHhhhhCC-----CceEEEEecCCCceEEEEeecCeecccceeEecccHHH
Q 019039 113 PAKNREKMVETMFEKYNFAG--VFIQIQAVLTLYAQG-----LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRH 185 (347)
Q Consensus 113 ~~~~r~~l~e~lfe~~~~~~--v~~~~~~~~a~~~~g-----~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~ 185 (347)
.-..++.+++.+.+..|++- +.=..++-+...+.- ..+++|||+|+++|.++-+-+|.+... ...++|.-.
T Consensus 94 eA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vr 171 (513)
T PRK10854 94 QALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVS 171 (513)
T ss_pred cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeEe--EEEecceee
Confidence 33556677777777667642 222233333333221 245899999999999999988875543 345888766
Q ss_pred HHHH
Q 019039 186 ITSY 189 (347)
Q Consensus 186 l~~~ 189 (347)
+++.
T Consensus 172 l~e~ 175 (513)
T PRK10854 172 FAQL 175 (513)
T ss_pred HHhh
Confidence 6653
No 68
>PRK03011 butyrate kinase; Provisional
Probab=93.59 E-value=1.9 Score=40.36 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=22.6
Q ss_pred CceEEEEecCCCceEEEEeecCeecccc
Q 019039 148 LLTGLVIDSGDGVTHVVPVVDGYSFPHL 175 (347)
Q Consensus 148 ~~tglVVDiG~~~t~v~pv~dG~~~~~~ 175 (347)
..+.+++.+|.+. .+..+.+|+++..+
T Consensus 175 ~~n~I~~hLGtGi-g~gai~~Gk~idgs 201 (358)
T PRK03011 175 ELNLIVAHLGGGI-SVGAHRKGRVIDVN 201 (358)
T ss_pred cCcEEEEEeCCCc-eeeEEECCEEEecC
Confidence 4588999999987 78899999998754
No 69
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.33 E-value=0.8 Score=41.57 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred eccccCCeeecHHHHHHHHHHHcccccCCCCC---CCeEEEEcCCCCCHHHHHHHHhh--cccccCCCeEeeehhhhHhh
Q 019039 69 SYPVNNGIVQNWEDMGQVWDHAFFSELKIDPP---ECKILLTDPPLNPAKNREKMVET--MFEKYNFAGVFIQIQAVLTL 143 (347)
Q Consensus 69 ~~p~~~g~i~~~~~l~~~~~~~~~~~l~~~~~---~~~v~l~e~~~~~~~~r~~l~e~--lfe~~~~~~v~~~~~~~~a~ 143 (347)
..|+...--.|.++++.+...=| ..-++.|+ .-.|++|-...-.+..|..+.-+ +.-.|=+...--.-+++.|-
T Consensus 53 FTPv~~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAG 131 (473)
T COG4819 53 FTPVDKQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAG 131 (473)
T ss_pred eeeecccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhcc
Confidence 34665433446778888777666 56666665 45677776555444444433221 11222222222222333333
Q ss_pred hhCC-------Cce-EEEEecCCCceEEEEeecCeecccceeEecccHHHH
Q 019039 144 YAQG-------LLT-GLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHI 186 (347)
Q Consensus 144 ~~~g-------~~t-glVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l 186 (347)
-++| +.+ -+=+|+|+++|...-+-.|++.-.+. +++||+.+
T Consensus 132 kGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLi 180 (473)
T COG4819 132 KGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLI 180 (473)
T ss_pred CCccccchhhhhceEEEEEeccCCccceeeeccccccccee--eecCcEEE
Confidence 3333 233 35689999999999998998887654 78999743
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.65 E-value=0.41 Score=42.83 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=31.8
Q ss_pred eEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeecCCcccccccccccc
Q 019039 298 IVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRNLGLHVYSLFLSVFV 346 (347)
Q Consensus 298 Ivl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~~~~~~~s~w~G~~~ 346 (347)
|+++||......+.+.|++.|++..+..++. ....+.+...+||-+
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~a~GAal 269 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKVPII---IPVEPQYDPAYGAAL 269 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCCTCE---CECCGSSHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCCceE---ECCCCCccHHHHHHH
Confidence 9999999988778888877777766665433 233466777777643
No 71
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.09 E-value=0.47 Score=46.18 Aligned_cols=71 Identities=17% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHhhcccccCCCe--EeeehhhhHhhhhC----C-CceEEEEecCCCceEEEEeecCeecccceeEecccHHHHHHHH
Q 019039 118 EKMVETMFEKYNFAG--VFIQIQAVLTLYAQ----G-LLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYL 190 (347)
Q Consensus 118 ~~l~e~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l~~~l 190 (347)
+...+.+-+.+|++- +.=-.++-++.++. + ...++|+|+|+++|.++-+-+..+.. ...+++|.-.+++.+
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRLTERF 168 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeecceEEeehhh
Confidence 344444445555542 22233444444332 3 67899999999999998887655444 245778865544443
No 72
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=91.59 E-value=1 Score=34.87 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=40.5
Q ss_pred EEEecCCCceEEEEeecCeecccceeEeccc--------HHHHH--HHHHHHHhhcCCCCCCCChHHHHHHH-HHhccc
Q 019039 152 LVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA--------GRHIT--SYLVDLLSRRGYSMNRTADFETVRQI-KEKLCY 219 (347)
Q Consensus 152 lVVDiG~~~t~v~pv~dG~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-K~~~~~ 219 (347)
++||+|+++|.++-..++.... ..-+++| |..++ +.+.+-++. ..+.+|++ |.++..
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~ 69 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGS 69 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeE
Confidence 6899999999999998876655 4568999 99999 888888864 36677777 766543
No 73
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.31 E-value=0.21 Score=45.27 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=24.3
Q ss_pred hHhhh-hCCCceEEEEecCCCceEEEEeecCeeccc
Q 019039 140 VLTLY-AQGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 140 ~~a~~-~~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
..+++ ..|..++++||+|+.+|+|.+|.||.+...
T Consensus 67 ~ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 67 IGAAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHHHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 34445 568889999999999999999999998643
No 74
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=90.39 E-value=1.6 Score=38.56 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.8
Q ss_pred eEEEeCCCceEEEeecCC
Q 019039 6 VVVCDNGTGYVKCGFAGE 23 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~ 23 (347)
-+.||+|-++++.|...+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 478999999999998864
No 75
>PRK13321 pantothenate kinase; Reviewed
Probab=89.23 E-value=3.1 Score=36.92 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.2
Q ss_pred eEEEeCCCceEEEeecCCC
Q 019039 6 VVVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~ 24 (347)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999998643
No 76
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=89.05 E-value=0.94 Score=40.90 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHHHhhcccccCCCeEeeeh---hhhHhh----hhC-CCceEEEEecCCCceEEEEeecCeecccceeEecccHHHH
Q 019039 115 KNREKMVETMFEKYNFAGVFIQI---QAVLTL----YAQ-GLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHI 186 (347)
Q Consensus 115 ~~r~~l~e~lfe~~~~~~v~~~~---~~~~a~----~~~-g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~GG~~l 186 (347)
..++.+++.+.+..|++-- +++ ++.++. .+. ...+++|+|+|+++|.++.+.+|.+... ..+|+|.-.+
T Consensus 71 ~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl 147 (285)
T PF02541_consen 71 KNSDEFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVRL 147 (285)
T ss_dssp TTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHHH
T ss_pred cCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHHH
Confidence 4556777777777776432 222 222221 222 6788999999999999999999987764 5789999888
Q ss_pred HHHH
Q 019039 187 TSYL 190 (347)
Q Consensus 187 ~~~l 190 (347)
++.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 77
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=89.03 E-value=20 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.6
Q ss_pred eEEEEecCCCceEEEEeecCeecccc
Q 019039 150 TGLVIDSGDGVTHVVPVVDGYSFPHL 175 (347)
Q Consensus 150 tglVVDiG~~~t~v~pv~dG~~~~~~ 175 (347)
+-+++.+|.+.. ++.|.||+++..+
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs 199 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVN 199 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcC
Confidence 789999999875 9999999988654
No 78
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=88.91 E-value=2.5 Score=38.93 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred eEEecCCCCCCChHHHHHHHHhhcCC
Q 019039 298 IVLSGGSTMYPGLPSRYYVELFFASH 323 (347)
Q Consensus 298 Ivl~GG~s~i~G~~erl~~eL~~~~~ 323 (347)
|+|+|-.+.+|-|.+.+.+.|....+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~ 289 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFP 289 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988877
No 79
>PRK13324 pantothenate kinase; Reviewed
Probab=88.86 E-value=5.5 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.7
Q ss_pred eEEEeCCCceEEEeecCC
Q 019039 6 VVVCDNGTGYVKCGFAGE 23 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~ 23 (347)
.+.||+|-++||.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 588999999999998753
No 80
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=87.14 E-value=5.4 Score=35.13 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.4
Q ss_pred EEEeCCCceEEEeecCCC
Q 019039 7 VVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 7 vViD~Gs~~ik~G~ag~~ 24 (347)
++||+|-+++++|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987553
No 81
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=86.59 E-value=1.4 Score=37.73 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=14.9
Q ss_pred EEEeCCCceEEEeecCCC
Q 019039 7 VVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 7 vViD~Gs~~ik~G~ag~~ 24 (347)
++||+|-+.+|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998554
No 82
>PRK13318 pantothenate kinase; Reviewed
Probab=85.92 E-value=5.2 Score=35.56 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.7
Q ss_pred eEEEeCCCceEEEeecCC
Q 019039 6 VVVCDNGTGYVKCGFAGE 23 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~ 23 (347)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 578999999999998853
No 83
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=82.82 E-value=18 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=21.6
Q ss_pred eEEecCCCCCCChHHHHHHHHhh
Q 019039 298 IVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 298 Ivl~GG~s~i~G~~erl~~eL~~ 320 (347)
||++||.+...++.+-|++.|..
T Consensus 346 iv~~GGva~n~av~~ale~~lg~ 368 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLGR 368 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhCC
Confidence 99999999999999999999973
No 84
>PRK13326 pantothenate kinase; Reviewed
Probab=82.54 E-value=11 Score=33.59 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.4
Q ss_pred CeEEEeCCCceEEEeecCCC
Q 019039 5 NVVVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 5 ~~vViD~Gs~~ik~G~ag~~ 24 (347)
..++||+|-+++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 46899999999999998764
No 85
>PRK13320 pantothenate kinase; Reviewed
Probab=79.05 E-value=37 Score=29.89 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=16.2
Q ss_pred eEEEeCCCceEEEeecCC
Q 019039 6 VVVCDNGTGYVKCGFAGE 23 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~ 23 (347)
.+.||+|-+++|.|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 789999999999998754
No 86
>PRK09557 fructokinase; Reviewed
Probab=73.29 E-value=71 Score=28.84 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHhhcccccCCCeEeeehhhhHhhhhC-------CCceEEEEecCCCceEEEEeecCeeccc
Q 019039 120 MVETMFEKYNFAGVFIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 120 l~e~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
+.+.+-+.+++| +++.+++-+++++- +..+.+.+.+|.+ .-..-|.+|.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEEECCEEEec
Confidence 444555567887 77889888887653 3466678888855 45666778887764
No 87
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=72.19 E-value=31 Score=31.39 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred HHhhcccccCCCeEeeehhhhHhhhh-------CCCceEEEEecCCCceEEEEeecCeeccc
Q 019039 120 MVETMFEKYNFAGVFIQIQAVLTLYA-------QGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 120 l~e~lfe~~~~~~v~~~~~~~~a~~~-------~g~~tglVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
+.+.+=+.+++| +++.+++-+++++ .+..+.++|.+|.+. -...|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 455555677887 8899999888773 246789999999886 6777789988764
No 88
>PRK13317 pantothenate kinase; Provisional
Probab=71.40 E-value=36 Score=30.65 Aligned_cols=27 Identities=22% Similarity=-0.012 Sum_probs=23.1
Q ss_pred hhhcceEEec-CCCCCCChHHHHHHHHh
Q 019039 293 MLYQHIVLSG-GSTMYPGLPSRYYVELF 319 (347)
Q Consensus 293 ~l~~nIvl~G-G~s~i~G~~erl~~eL~ 319 (347)
.-.++|+++| |.+..|++.++|.+.++
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~ 248 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTK 248 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHh
Confidence 3447899999 79999999999998775
No 89
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=70.90 E-value=3 Score=39.22 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=36.3
Q ss_pred hhcceEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeecCCcccccccccccc
Q 019039 294 LYQHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRNLGLHVYSLFLSVFV 346 (347)
Q Consensus 294 l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~~~~~~~s~w~G~~~ 346 (347)
+-..|+++||.++-+||.+.|++.|....++.++.+ ++.++|.--+||.+
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~V---p~~pq~~GALGAAL 430 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINI---DPDSIYTGALGASE 430 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCCeEec---CCCccHHHHHHHHH
Confidence 456899999999999999999999976655444332 34455666666644
No 90
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=69.53 E-value=6.4 Score=35.01 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=36.3
Q ss_pred ceEEEEecCCCceEEEEeecCeecccceeEe----cccHHHHHHHHHHHHhh
Q 019039 149 LTGLVIDSGDGVTHVVPVVDGYSFPHLTKRM----NVAGRHITSYLVDLLSR 196 (347)
Q Consensus 149 ~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~----~~GG~~l~~~l~~~l~~ 196 (347)
.+-+.|.+|...|.++.|.+|+.+..-..+. .+||-.++..+.-.|..
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~ 214 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALAN 214 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHH
Confidence 3458899999999999999999886544333 67777777777766653
No 91
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=64.01 E-value=3.7 Score=38.41 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=20.4
Q ss_pred cceEEecCCCCCCChHHHHHHHHhh
Q 019039 296 QHIVLSGGSTMYPGLPSRYYVELFF 320 (347)
Q Consensus 296 ~nIvl~GG~s~i~G~~erl~~eL~~ 320 (347)
..|++|||++.-+-|.+||++.|..
T Consensus 286 ~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 286 DEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred ceEEEECCCcCCHHHHHHHHhhCCC
Confidence 5799999999999999999988854
No 92
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=63.59 E-value=24 Score=31.19 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=40.4
Q ss_pred eeehhhhHhhhhC-------CCceEEEEecCCCceEEEEeecCeecc--cceeEecccHHHHHHHHHHHH
Q 019039 134 FIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFP--HLTKRMNVAGRHITSYLVDLL 194 (347)
Q Consensus 134 ~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~--~~~~~~~~GG~~l~~~l~~~l 194 (347)
+++++..+|.++. .....+|||+|.+.|-...|.+|++.- ... +..+....+.+++.++-
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHH-T~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIYGVFEHH-TGMLTPEKLEEYLERLR 213 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEEEEEecc-cCCCCHHHHHHHHHHHH
Confidence 6778777777765 346789999999999999998887652 111 12344455555555443
No 93
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=61.35 E-value=25 Score=30.52 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=57.2
Q ss_pred HHHHHHHcccccCCCCCCCeEEE-EcC-----CCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhCCCceEEEEecC
Q 019039 84 GQVWDHAFFSELKIDPPECKILL-TDP-----PLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSG 157 (347)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~~~v~l-~e~-----~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG 157 (347)
-.+++..| +.-++++.+-.++. |-- |+..-..-.+.+..+..+-=++.=..+-.--+.-+-.|.++.+|+=+.
T Consensus 54 l~Lv~~al-~ea~v~~~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigHIEMGR~iTgA~nPvvLYvS 132 (336)
T KOG2708|consen 54 LGLVKQAL-EEAGVTSDDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGHIEMGREITGAQNPVVLYVS 132 (336)
T ss_pred HHHHHHHH-HHcCCChhhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhhhhhcceeccCCCCEEEEEe
Confidence 34555555 45556666555443 222 233334444555554332211110111111122233467888999999
Q ss_pred CCceEEEEeecCee-cccceeEecccHHHHHHHHHHHHhhcC
Q 019039 158 DGVTHVVPVVDGYS-FPHLTKRMNVAGRHITSYLVDLLSRRG 198 (347)
Q Consensus 158 ~~~t~v~pv~dG~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~ 198 (347)
++.|.|+++.+.+- +.. .++++.--.+-..+...|+-.+
T Consensus 133 GGNTQvIAYse~rYrIFG--ETlDIAvGNClDRFAR~lklsN 172 (336)
T KOG2708|consen 133 GGNTQVIAYSEKRYRIFG--ETLDIAVGNCLDRFARVLKLSN 172 (336)
T ss_pred CCceEEEEEccceeeeec--ceehhhhhhhHHHHHHHhcCCC
Confidence 99999999988742 222 2344443345556666666543
No 94
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=61.07 E-value=60 Score=29.37 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcccccCCCCCC--CeEEEEcCCCCCHHHHHHHHhhcccccC--CCeEeeehhhhHhhhhC--CCceEEEE
Q 019039 81 EDMGQVWDHAFFSELKIDPPE--CKILLTDPPLNPAKNREKMVETMFEKYN--FAGVFIQIQAVLTLYAQ--GLLTGLVI 154 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~--~~v~l~e~~~~~~~~r~~l~e~lfe~~~--~~~v~~~~~~~~a~~~~--g~~tglVV 154 (347)
+.++++.+.++ ++-+++.+. +.|.+.-+-...++..+++.+.+-.+|. +..+++.+++..++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45778888887 677777664 7788888877788888888888777664 34589999999999877 55899999
Q ss_pred ecCCCceEEEEeecCeec
Q 019039 155 DSGDGVTHVVPVVDGYSF 172 (347)
Q Consensus 155 DiG~~~t~v~pv~dG~~~ 172 (347)
=-|.++..-.-.-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999998877777788544
No 95
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=60.99 E-value=10 Score=36.46 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=46.8
Q ss_pred CCeEEEEcCC------CCCHHHHHHHHhhccccc-CCC---------eEeeehhhhHhh-----hhCC------CceEEE
Q 019039 101 ECKILLTDPP------LNPAKNREKMVETMFEKY-NFA---------GVFIQIQAVLTL-----YAQG------LLTGLV 153 (347)
Q Consensus 101 ~~~v~l~e~~------~~~~~~r~~l~e~lfe~~-~~~---------~v~~~~~~~~a~-----~~~g------~~tglV 153 (347)
+.++.++++. .+....|+.+.+++.++. +.| .--+++.|.+.. ++-+ ...-++
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~ 253 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFIL 253 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEE
Confidence 3456677664 356788999999986554 222 223444443322 2223 245699
Q ss_pred EecCCCceEEEEeecCeec
Q 019039 154 IDSGDGVTHVVPVVDGYSF 172 (347)
Q Consensus 154 VDiG~~~t~v~pv~dG~~~ 172 (347)
||+|+.+|+|-.+.+|.+-
T Consensus 254 VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 254 IDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEcCccccchhhccCCCcc
Confidence 9999999999999999655
No 96
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.43 E-value=10 Score=38.67 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.9
Q ss_pred hhhhCCCce--EEEEecCCCceEEEEeecCeeccc
Q 019039 142 TLYAQGLLT--GLVIDSGDGVTHVVPVVDGYSFPH 174 (347)
Q Consensus 142 a~~~~g~~t--glVVDiG~~~t~v~pv~dG~~~~~ 174 (347)
|+|-+|..+ .+++|+|+.+|++.-+.+|.+...
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 445557777 999999999999999998877644
No 97
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=59.08 E-value=13 Score=27.23 Aligned_cols=50 Identities=14% Similarity=0.363 Sum_probs=34.8
Q ss_pred cCCeeecHHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccC
Q 019039 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (347)
Q Consensus 73 ~~g~i~~~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~ 129 (347)
+.|++.|+..+++.++.+. +. -++..+.-.+++. ...-|.+++.+++.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~-----lDh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DR-----LDHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-Hh-----CCCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4799999999999998866 33 2444554444453 2355889999888763
No 98
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=57.14 E-value=3.3 Score=38.78 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred ceEEecCCCCCCChHHHHHHHHh
Q 019039 297 HIVLSGGSTMYPGLPSRYYVELF 319 (347)
Q Consensus 297 nIvl~GG~s~i~G~~erl~~eL~ 319 (347)
.|++|||++.-|-+.+||++.|.
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhcC
Confidence 59999999999999999999883
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=56.32 E-value=44 Score=27.87 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=25.1
Q ss_pred cccCCeeecHHHHHHHHHHHccccc----CCCCCCCeEEEEcC
Q 019039 71 PVNNGIVQNWEDMGQVWDHAFFSEL----KIDPPECKILLTDP 109 (347)
Q Consensus 71 p~~~g~i~~~~~l~~~~~~~~~~~l----~~~~~~~~v~l~e~ 109 (347)
.+++|.|.|.+.+.+.++.++ +.+ +.+. ..|.+..+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai-~~ae~~~~~~i--~~V~v~i~ 75 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV-EEAERMAGVKI--DSVYVGIS 75 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH-HHHHHHhCCcc--cEEEEEEc
Confidence 478999999999988888888 444 4432 34555444
No 100
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=54.90 E-value=21 Score=31.00 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+--...+.++++++++++-|.||=.
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 56677777777 3678999999999999999999999999888753
No 101
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=52.04 E-value=24 Score=31.32 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+-....+.++++++++++-|.||=.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 56777777777 3578999999999999999999999998888753
No 102
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=51.28 E-value=24 Score=31.23 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+--..++.++++++++++-|.||=.
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 56777778888 3578999999999999999999999998888753
No 103
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=51.21 E-value=25 Score=30.99 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+--...+.++++++++++-|.||=.
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 56677777777 3678999999999999999999999998887743
No 104
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=50.62 E-value=25 Score=31.18 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+-....+.++++++++++-|.||=
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 55677777777 357899999999999999999999999888774
No 105
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=50.57 E-value=25 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+-...++.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56777777777 368899999999999999999999999888875
No 106
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=50.55 E-value=26 Score=31.03 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--...+.++++++++++-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 56677777777 357899999999999999999999999888774
No 107
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=50.48 E-value=26 Score=30.38 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+-....+.++++++++++-|.||=
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 56677777777 357899999999899999999999999888764
No 108
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=50.12 E-value=26 Score=31.06 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+-...++.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56677777777 357899999999999999999999999888875
No 109
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=49.11 E-value=27 Score=31.00 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+-....+.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56777777777 357899999999999999999999999888875
No 110
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=48.66 E-value=29 Score=30.67 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+-....+.++++++++++-|.||=.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 56677777777 3578999999999999999999999998887743
No 111
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=48.60 E-value=28 Score=30.83 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
+.++.|=+++| ..++.||||+--..++.++++++++++-|.||=.
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 56677777777 3678999999999999999999999998888743
No 112
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=48.28 E-value=29 Score=30.19 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--..++.++++.+++++-|.||=
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 56677777777 467899999998899999999999999888875
No 113
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=48.27 E-value=29 Score=30.27 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--..++.++++.+++++-|.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 56777777777 357899999988889999999999999888875
No 114
>PF13941 MutL: MutL protein
Probab=46.84 E-value=24 Score=34.20 Aligned_cols=76 Identities=24% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCCeEEEEcCC------CCCHHHHHHHHhhccccc-CCC---------eEeeehhhhHhh-----hhC-CCceEEEEecC
Q 019039 100 PECKILLTDPP------LNPAKNREKMVETMFEKY-NFA---------GVFIQIQAVLTL-----YAQ-GLLTGLVIDSG 157 (347)
Q Consensus 100 ~~~~v~l~e~~------~~~~~~r~~l~e~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~tglVVDiG 157 (347)
...+++++++. .+....|+.+.+++.++. +.| .--+++.|-+.+ ++- +...-+|||+|
T Consensus 177 ~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIG 256 (457)
T PF13941_consen 177 AGKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIG 256 (457)
T ss_pred CCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEcc
Confidence 35678888865 345677888888876543 222 223444444433 344 66778999999
Q ss_pred CCceEEEEeecCeecccc
Q 019039 158 DGVTHVVPVVDGYSFPHL 175 (347)
Q Consensus 158 ~~~t~v~pv~dG~~~~~~ 175 (347)
+.+|+|--+.+|.+....
T Consensus 257 GATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 257 GATTDVHSVAEGSPEIPG 274 (457)
T ss_pred CcccchhhhccCCccccc
Confidence 999999999977666544
No 115
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=46.15 E-value=39 Score=34.39 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=20.2
Q ss_pred hhcccccCCCeEeeehhhhHhhhh
Q 019039 122 ETMFEKYNFAGVFIQIQAVLTLYA 145 (347)
Q Consensus 122 e~lfe~~~~~~v~~~~~~~~a~~~ 145 (347)
+.+-+.|++|.+.+.++.-|++|+
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 445556899999999999999999
No 116
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=45.22 E-value=34 Score=29.69 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|-+++| ..++.||||+--...+.++++++++++-+.||-.
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAF------VTSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhc------ccCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 56777778887 3578999999999999999999999998888753
No 117
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=43.97 E-value=35 Score=30.35 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--..++.++++++++++-|.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 56777777777 357899999998899999999999999888875
No 118
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=40.29 E-value=45 Score=29.50 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--..++.++++.+++++-+.||=
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 55677777777 357899999999999999999999998887775
No 119
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=40.05 E-value=45 Score=29.57 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCC-CHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~-~~~~r~~l~e~lfe~~~~~ 131 (347)
|.++.|=+++| ..++.||||+--... +.++++++++++-|.||=.
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 56677777777 367899999988777 5899999999998888753
No 120
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=38.85 E-value=48 Score=29.49 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCC-CHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~-~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+--... +.++++++++++-|.||=
T Consensus 76 dv~~~I~~~AF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAF------KTSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 56677777777 357899999977777 789999999999888875
No 121
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.37 E-value=1.7e+02 Score=26.09 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.7
Q ss_pred ceEEEEecCCCceEEEEeecCeec
Q 019039 149 LTGLVIDSGDGVTHVVPVVDGYSF 172 (347)
Q Consensus 149 ~tglVVDiG~~~t~v~pv~dG~~~ 172 (347)
.-+||||+|.+.|...-|-+++..
T Consensus 227 ~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEE
Confidence 457999999999998888777543
No 122
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=35.02 E-value=54 Score=29.12 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCC-CHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLN-PAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~-~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|=+++| ..++.||||+--... +.++++.+++++-|.||-
T Consensus 76 dv~~~I~~~aF------~~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAF------KTSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 56677777777 357899999987777 689999999999877765
No 123
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=34.69 E-value=69 Score=27.90 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..++.||||+.-...+.++++++++++-+.||-
T Consensus 74 dvl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lGd 117 (228)
T cd08599 74 DCIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLGD 117 (228)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 45666666666 357899999988888999999999999999883
No 124
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=33.08 E-value=36 Score=33.46 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCCCCeEEEeCCCceEEEeecCCC
Q 019039 1 MDNRNVVVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 1 ~~~~~~vViD~Gs~~ik~G~ag~~ 24 (347)
|+.+-.++||+||+++|+.....+
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCC
Confidence 566679999999999999987665
No 125
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=32.40 E-value=64 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=33.2
Q ss_pred cCCeeecHHHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccC
Q 019039 73 NNGIVQNWEDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYN 129 (347)
Q Consensus 73 ~~g~i~~~~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~ 129 (347)
..|++.|+..++++++.++.+.| ++..+.-.+++.....-+.++..+++.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999988774223 34444433321112245788888877654
No 126
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=32.30 E-value=19 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=16.7
Q ss_pred eEEecCCCCCCChHHHHHHHHhhc
Q 019039 298 IVLSGGSTMYPGLPSRYYVELFFA 321 (347)
Q Consensus 298 Ivl~GG~s~i~G~~erl~~eL~~~ 321 (347)
.|=|||.| |-|..+|.++|.+.
T Consensus 8 ~ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 8 AISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEEESSS---HHHHHHHHHHHHHH
T ss_pred EEECCCCC--hHHHHHHHHHHHHh
Confidence 45578887 88999999998753
No 127
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=31.48 E-value=32 Score=29.64 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHhhhcceEEecCCCCCCChHHHHHHHHhhcCCCCCeeeeecCCcccccccccccc
Q 019039 289 DNRMMLYQHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCFLRNLGLHVYSLFLSVFV 346 (347)
Q Consensus 289 d~r~~l~~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~~~~~~~~~~s~w~G~~~ 346 (347)
|+-+..-+.|+++|.+| .|+..- -++....|+.++.+.+..-.+.=.+|+|+-+
T Consensus 70 DldkyAesDvviVGAGS--aGLsAA--Y~I~~~rPdlkvaIIE~SVaPGGGaWLGGQL 123 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGS--AGLSAA--YVIAKNRPDLKVAIIESSVAPGGGAWLGGQL 123 (328)
T ss_pred HHHhhhccceEEECCCc--ccccee--eeeeccCCCceEEEEEeeecCCCcccccchh
Confidence 44555567799999877 455432 2456677999988888777778889999854
No 128
>PLN02952 phosphoinositide phospholipase C
Probab=28.75 E-value=80 Score=31.77 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
|.++.|-+++| ..+..||||+--..++.++++++++++-+.||=
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 56777777777 357899999999999999999999999888875
No 129
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.21 E-value=82 Score=31.69 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
+.++.|-+++| ..++.||||+--...+.+++.++++++-+.||=
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 56777777777 367899999998899999999999999888775
No 130
>PLN02222 phosphoinositide phospholipase C 2
Probab=27.96 E-value=79 Score=31.69 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
+.++.|-+++| ..++.||||+--...+.+++.++++++-|.||=
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 55677777777 367899999999899999999999999888875
No 131
>PF13941 MutL: MutL protein
Probab=27.92 E-value=45 Score=32.29 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred eEEEeCCCceEEEeecC--CCCCCcc
Q 019039 6 VVVCDNGTGYVKCGFAG--ENFPNSV 29 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag--~~~P~~~ 29 (347)
.+++|+||.+||+-... ++.++++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE
Confidence 68999999999998876 5566543
No 132
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=27.11 E-value=1.8e+02 Score=20.88 Aligned_cols=45 Identities=20% Similarity=0.065 Sum_probs=25.3
Q ss_pred EEEEecCCCceEEEEe-ecCeecccceeEecccHHHHHHHHHHHHh
Q 019039 151 GLVIDSGDGVTHVVPV-VDGYSFPHLTKRMNVAGRHITSYLVDLLS 195 (347)
Q Consensus 151 glVVDiG~~~t~v~pv-~dG~~~~~~~~~~~~GG~~l~~~l~~~l~ 195 (347)
-|-+|+|...+.+.-+ .+|..+........-+...+-+.+.+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~ 48 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIK 48 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHH
Confidence 4789999888877776 45665543222222233444444554444
No 133
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=26.85 E-value=51 Score=28.71 Aligned_cols=18 Identities=33% Similarity=0.215 Sum_probs=15.3
Q ss_pred eEEEeCCCceEEEeecCC
Q 019039 6 VVVCDNGTGYVKCGFAGE 23 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~ 23 (347)
.+.||+||.++|+....+
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 479999999999987643
No 134
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=26.78 E-value=4.7e+02 Score=23.45 Aligned_cols=128 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred eEEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHHHHH
Q 019039 6 VVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQ 85 (347)
Q Consensus 6 ~vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~l~~ 85 (347)
.+.||+|..+++++......-... ....|... .+.+.+-.
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~~-------------------------------------~~~~~~~~---~~~~~~~~ 41 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQW-------------------------------------EERVPTPR---DSYDAFLD 41 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEEE-------------------------------------EEEecCCC---cCHHHHHH
Q ss_pred HHHHHcccccCCCCCCCeEEEEcC------------CCCCHHHHHHHHhhcccccCCCeEeeehhhhHhhhhC-------
Q 019039 86 VWDHAFFSELKIDPPECKILLTDP------------PLNPAKNREKMVETMFEKYNFAGVFIQIQAVLTLYAQ------- 146 (347)
Q Consensus 86 ~~~~~~~~~l~~~~~~~~v~l~e~------------~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~~a~~~~------- 146 (347)
.+...+.+..........+-+..| +..+.-..-.+.+.+=+.+++| |++.++.-+++++-
T Consensus 42 ~i~~~i~~~~~~~~~~~~igia~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~ 120 (303)
T PRK13310 42 AVCELVAEADQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLGRD-VRLDNDANCFALSEAWDDEFT 120 (303)
T ss_pred HHHHHHHHHHhhcCCcceEEEeCCCcccCCCCEEeccCcccccCCcHHHHHHHHHCCC-eEEeccHhHHHHHHhhhcccc
Q ss_pred CCceEEEEecCCCceEEEEeecCeecccc
Q 019039 147 GLLTGLVIDSGDGVTHVVPVVDGYSFPHL 175 (347)
Q Consensus 147 g~~tglVVDiG~~~t~v~pv~dG~~~~~~ 175 (347)
+..+.+.|.+|.+. -..-|.+|.++...
T Consensus 121 ~~~~~~~l~~gtGi-G~giv~~G~l~~G~ 148 (303)
T PRK13310 121 QYPLVMGLILGTGV-GGGLVFNGKPISGR 148 (303)
T ss_pred CCCcEEEEEecCce-EEEEEECCEEeeCC
No 135
>PRK00976 hypothetical protein; Provisional
Probab=26.24 E-value=1e+02 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=27.2
Q ss_pred hHhhhhCCCceEEEEecCCCceEEEEeecCeecc
Q 019039 140 VLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFP 173 (347)
Q Consensus 140 ~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~ 173 (347)
.+|.+-.+..+-+|+|+|+ .|..+.|-+|+.+-
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 3344457889999999999 89999999998775
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=26.08 E-value=94 Score=31.06 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNFA 131 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~~ 131 (347)
+.++.|-+++| ..+..||||+--..++.++++++++++-|.||-.
T Consensus 179 ~v~~~I~~~AF------~~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~~ 223 (567)
T PLN02228 179 KCLNAIKDNAF------QVSDYPVVITLEDHLPPNLQAQVAKMLTKTFRGM 223 (567)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhHh
Confidence 56677777777 3578999999998999999999999998877743
No 137
>PLN02223 phosphoinositide phospholipase C
Probab=25.57 E-value=96 Score=30.69 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
+.++.|-+|+|. .+++.||||+--..++.+++.++++++-+.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 567777777772 234899999999999999999999999887774
No 138
>PRK00047 glpK glycerol kinase; Provisional
Probab=25.41 E-value=64 Score=31.65 Aligned_cols=25 Identities=16% Similarity=-0.011 Sum_probs=18.8
Q ss_pred hcceEEecCCCCCCChHHHHHHHHh
Q 019039 295 YQHIVLSGGSTMYPGLPSRYYVELF 319 (347)
Q Consensus 295 ~~nIvl~GG~s~i~G~~erl~~eL~ 319 (347)
.+.|.++||+++-+-+.+-+.+-+.
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvlg 428 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADILG 428 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhhC
Confidence 4669999999988877766665554
No 139
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=25.21 E-value=1.2e+02 Score=27.17 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=17.7
Q ss_pred cceEEecCCCCCCChHHHHHHHHhhcCCCCCeee
Q 019039 296 QHIVLSGGSTMYPGLPSRYYVELFFASHDIPLCF 329 (347)
Q Consensus 296 ~nIvl~GG~s~i~G~~erl~~eL~~~~~~~~~~~ 329 (347)
.+|++++|++-..++..++.+.|.+..++.++.+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~v 204 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITL 204 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEE
Confidence 3455666655555555555555554433433333
No 140
>PRK13333 pantothenate kinase; Reviewed
Probab=24.75 E-value=86 Score=26.86 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=19.3
Q ss_pred hhhHhhhhCCCceEEEEecCCCceEEEEeecC
Q 019039 138 QAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDG 169 (347)
Q Consensus 138 ~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG 169 (347)
+-++++++. ..++|||+|...|- -.+.+|
T Consensus 75 DR~~a~~aa--~~~lVIDaGTAiTi-Dvv~~g 103 (206)
T PRK13333 75 DRIAACYAI--EDGVVVDAGSAITV-DIMSNG 103 (206)
T ss_pred HHHHHhccC--CCeEEEEcCCceEE-EEEcCC
Confidence 445566654 57999999998763 344555
No 141
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.34 E-value=46 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=18.8
Q ss_pred CCeEEEeCCCceEEEeecCCCCCCcc
Q 019039 4 RNVVVCDNGTGYVKCGFAGENFPNSV 29 (347)
Q Consensus 4 ~~~vViD~Gs~~ik~G~ag~~~P~~~ 29 (347)
.+.|++|+|++++.++.-.+..|...
T Consensus 77 ~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 77 ENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred CCEEEEeCCCCEEEEEEEECCeeecc
Confidence 57899999999999999888777643
No 142
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=23.14 E-value=1.1e+02 Score=31.29 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccccCCCCCCCeEEEEcCCCCCHHHHHHHHhhcccccCC
Q 019039 81 EDMGQVWDHAFFSELKIDPPECKILLTDPPLNPAKNREKMVETMFEKYNF 130 (347)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~~~v~l~e~~~~~~~~r~~l~e~lfe~~~~ 130 (347)
+.++.|=+|+| ..+.+||||+--...++++++.+++++=+.||=
T Consensus 361 ~vl~aIk~~AF------~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd 404 (746)
T KOG0169|consen 361 DVLRAIKKYAF------VTSPYPVILTLENHCSPDQQAKMAQMLKEIFGD 404 (746)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 56777777887 467899999999999999999999998777764
No 143
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=22.79 E-value=2.9e+02 Score=27.00 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEeCCCceEEEeecCCCCCCcccccceeecCcchhhhhhhccCCceEeccccccccCCceeeccccCCeeecHHHHHHH
Q 019039 7 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMGQV 86 (347)
Q Consensus 7 vViD~Gs~~ik~G~ag~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~l~~~ 86 (347)
||||-||.-+|+ +-+..|..-+.+....... .....+.-.|-+.......-.-.+ +..+
T Consensus 12 iviDaGSSgTrl-------~Vy~w~~~~g~~~~~i~~~--~~~~~k~~PGiSsfa~nP~~a~~~------------l~pL 70 (501)
T KOG1386|consen 12 IVIDAGSSGTRL-------FVYKWPAESGNPLTGIVGQ--IYDCLKLGPGISSFADNPEGASVY------------LTPL 70 (501)
T ss_pred EEEecCCCCceE-------EEEeecccCCCcccCccch--hhcccccCCChhhhccChhhhHHH------------HHHH
Q ss_pred HHHHcccccCCCCCCCeEEEEcCCCC---CHHHHHHHHhhcccccCCCeEeeehhh--------------------hHhh
Q 019039 87 WDHAFFSELKIDPPECKILLTDPPLN---PAKNREKMVETMFEKYNFAGVFIQIQA--------------------VLTL 143 (347)
Q Consensus 87 ~~~~~~~~l~~~~~~~~v~l~e~~~~---~~~~r~~l~e~lfe~~~~~~v~~~~~~--------------------~~a~ 143 (347)
++.+-...=+-..++.||.|---..+ +....+.+++.+...+...+=+..+.. ++.-
T Consensus 71 lefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~ 150 (501)
T KOG1386|consen 71 LEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGR 150 (501)
T ss_pred HHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHh
Q ss_pred hhC------CCceEEEEecCCCceEEE
Q 019039 144 YAQ------GLLTGLVIDSGDGVTHVV 164 (347)
Q Consensus 144 ~~~------g~~tglVVDiG~~~t~v~ 164 (347)
|.. ...|-=.+|+|+++|.|+
T Consensus 151 f~~~~~~~~~~~T~G~lDlGGAS~QIt 177 (501)
T KOG1386|consen 151 FGKKNRWDSRKETFGALDLGGASTQIT 177 (501)
T ss_pred ccccCcccCCcceeeeEecCCceeEEE
No 144
>PRK13331 pantothenate kinase; Reviewed
Probab=22.01 E-value=88 Score=27.71 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.8
Q ss_pred CCeEEEeCCCceEEEeecCCC
Q 019039 4 RNVVVCDNGTGYVKCGFAGEN 24 (347)
Q Consensus 4 ~~~vViD~Gs~~ik~G~ag~~ 24 (347)
...++||+|-+++++|+..++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECC
Confidence 357999999999999998654
No 145
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=20.96 E-value=87 Score=26.51 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=14.7
Q ss_pred eEEecCCCC-----------------CCChHHHHHHHH
Q 019039 298 IVLSGGSTM-----------------YPGLPSRYYVEL 318 (347)
Q Consensus 298 Ivl~GG~s~-----------------i~G~~erl~~eL 318 (347)
|+.|||++. +|||.|-+...=
T Consensus 70 IITTGGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s 107 (193)
T PRK09417 70 VLTTGGTGPARRDVTPEATLAVADKEMPGFGEQMRQIS 107 (193)
T ss_pred EEECCCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHh
Confidence 777888763 588887776543
No 146
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=20.79 E-value=5.7e+02 Score=22.29 Aligned_cols=55 Identities=16% Similarity=0.014 Sum_probs=38.6
Q ss_pred HHHhhcccccCCCeEeeehhhhHhhhhC-------CCceEEEEecCCCceEEEEeecCeecccc
Q 019039 119 KMVETMFEKYNFAGVFIQIQAVLTLYAQ-------GLLTGLVIDSGDGVTHVVPVVDGYSFPHL 175 (347)
Q Consensus 119 ~l~e~lfe~~~~~~v~~~~~~~~a~~~~-------g~~tglVVDiG~~~t~v~pv~dG~~~~~~ 175 (347)
.+.+.+=+.+++| |++.+++-+++++- +..+.+.|-+|.+ .-...|.+|.++...
T Consensus 87 ~l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G~ 148 (256)
T PRK13311 87 PLQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSGR 148 (256)
T ss_pred ChHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecCC
Confidence 3444444556887 77899888887643 3477888889866 467778899887643
No 147
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=20.28 E-value=62 Score=29.73 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=17.4
Q ss_pred cccCCCeEeeehhhhHhhhhC
Q 019039 126 EKYNFAGVFIQIQAVLTLYAQ 146 (347)
Q Consensus 126 e~~~~~~v~~~~~~~~a~~~~ 146 (347)
..|+++.+.++++-.+.+|+.
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl 108 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGL 108 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHH
T ss_pred HHhCCceEEEEcccchheecc
Confidence 567899999999999999875
Done!